Run ID: SRR1062864
Sample name:
Date: 02-04-2023 18:37:24
Number of reads: 109295
Percentage reads mapped: 2.53
Strain: lineage4.9;lineage2.2.1
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 0.96 |
lineage2.2 | East-Asian (Beijing) | Beijing-RD207 | RD105;RD207 | 0.06 |
lineage4.9 | Euro-American (H37Rv-like) | T1 | None | 0.98 |
lineage2.2.1 | East-Asian (Beijing) | Beijing-RD181 | RD105;RD207;RD181 | 0.06 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
fgd1 | 491742 | c.960T>C | synonymous_variant | 1.0 |
mshA | 575907 | p.Ala187Val | missense_variant | 1.0 |
rpoB | 762030 | p.Thr742Ala | missense_variant | 1.0 |
rpoC | 762894 | c.-476C>T | upstream_gene_variant | 1.0 |
rpoC | 762899 | c.-471G>C | upstream_gene_variant | 1.0 |
rpoB | 762911 | p.Ile1035Met | missense_variant | 1.0 |
rpoC | 762917 | c.-453C>G | upstream_gene_variant | 1.0 |
rpoC | 762920 | c.-450C>T | upstream_gene_variant | 1.0 |
rpoC | 762923 | c.-447C>G | upstream_gene_variant | 0.92 |
rpoC | 762929 | c.-441G>T | upstream_gene_variant | 0.92 |
rpoB | 762939 | p.Met1045Leu | missense_variant | 0.92 |
rpoB | 762942 | p.Ile1046Val | missense_variant | 0.92 |
rpoC | 762947 | c.-423C>G | upstream_gene_variant | 0.92 |
rpoC | 762971 | c.-399G>C | upstream_gene_variant | 0.86 |
rpoC | 762989 | c.-381G>T | upstream_gene_variant | 0.67 |
rpoC | 762995 | c.-375G>T | upstream_gene_variant | 0.5 |
rpoC | 762998 | c.-372G>A | upstream_gene_variant | 0.4 |
rpoC | 763031 | c.-339T>C | upstream_gene_variant | 1.0 |
rpoC | 764616 | p.Asn416Ser | missense_variant | 0.33 |
rpoC | 764623 | c.1254C>G | synonymous_variant | 0.67 |
rpoC | 764632 | c.1263T>C | synonymous_variant | 0.8 |
rpoC | 764635 | c.1266C>G | synonymous_variant | 0.71 |
rpoC | 764647 | c.1278C>T | synonymous_variant | 0.31 |
rpoC | 764650 | c.1281G>T | synonymous_variant | 1.0 |
rpoC | 764659 | p.Val431Met | missense_variant | 0.18 |
rpoC | 764665 | c.1296C>G | synonymous_variant | 1.0 |
rpoC | 764668 | c.1299C>A | synonymous_variant | 0.15 |
rpoC | 764671 | c.1302G>C | synonymous_variant | 0.18 |
rpoC | 764672 | p.Gln435Thr | missense_variant | 0.85 |
rpoC | 764677 | c.1308C>G | synonymous_variant | 0.15 |
rpoC | 764683 | c.1314G>C | synonymous_variant | 0.15 |
rpoC | 764686 | c.1317C>T | synonymous_variant | 0.69 |
rpoC | 764695 | c.1326T>C | synonymous_variant | 0.64 |
rpoC | 764706 | p.Leu446Gln | missense_variant | 0.21 |
rpoC | 764716 | c.1347G>C | synonymous_variant | 0.8 |
rpoC | 764719 | c.1350G>A | synonymous_variant | 0.33 |
rpoC | 764722 | c.1353G>C | synonymous_variant | 0.4 |
rpoC | 764902 | c.1533C>G | synonymous_variant | 1.0 |
rpoC | 764911 | c.1542A>G | synonymous_variant | 1.0 |
rpoC | 764912 | p.Met515Val | missense_variant | 1.0 |
rpoC | 764918 | p.Val517Ile | missense_variant | 1.0 |
rpoC | 764935 | c.1566T>C | synonymous_variant | 1.0 |
rpoC | 764948 | c.1579T>C | synonymous_variant | 0.89 |
rpoC | 764953 | c.1584G>C | synonymous_variant | 0.89 |
rpoC | 764956 | c.1587T>C | synonymous_variant | 0.89 |
rpoC | 764958 | p.Glu530Ala | missense_variant | 0.89 |
rpoC | 764968 | c.1599T>C | synonymous_variant | 0.9 |
rpoC | 764995 | c.1626C>T | synonymous_variant | 0.83 |
mmpL5 | 776100 | p.Thr794Ile | missense_variant | 1.0 |
mmpL5 | 776182 | p.Asp767Asn | missense_variant | 1.0 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
Rv1258c | 1406760 | c.580_581insC | frameshift_variant | 1.0 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrs | 1472150 | n.305T>A | non_coding_transcript_exon_variant | 0.5 |
rrs | 1472153 | n.308G>A | non_coding_transcript_exon_variant | 0.56 |
rrs | 1472172 | n.327T>C | non_coding_transcript_exon_variant | 0.98 |
rrs | 1472210 | n.365A>T | non_coding_transcript_exon_variant | 0.95 |
rrs | 1472214 | n.369C>G | non_coding_transcript_exon_variant | 0.95 |
rrs | 1472223 | n.378C>G | non_coding_transcript_exon_variant | 0.52 |
rrs | 1472228 | n.383G>C | non_coding_transcript_exon_variant | 0.52 |
rrs | 1472235 | n.390G>C | non_coding_transcript_exon_variant | 0.95 |
rrs | 1472240 | n.395G>A | non_coding_transcript_exon_variant | 0.98 |
rrs | 1472242 | n.397C>T | non_coding_transcript_exon_variant | 0.95 |
rrs | 1472251 | n.406G>C | non_coding_transcript_exon_variant | 0.92 |
rrs | 1472251 | n.406G>T | non_coding_transcript_exon_variant | 0.92 |
rrs | 1472252 | n.407G>A | non_coding_transcript_exon_variant | 0.45 |
rrs | 1472253 | n.408G>T | non_coding_transcript_exon_variant | 0.47 |
rrs | 1472256 | n.411T>A | non_coding_transcript_exon_variant | 0.47 |
rrs | 1472259 | n.414C>A | non_coding_transcript_exon_variant | 0.93 |
rrs | 1472277 | n.432C>G | non_coding_transcript_exon_variant | 0.23 |
rrs | 1472279 | n.434T>A | non_coding_transcript_exon_variant | 0.4 |
rrs | 1472344 | n.499C>T | non_coding_transcript_exon_variant | 0.4 |
rrs | 1472380 | n.535G>C | non_coding_transcript_exon_variant | 0.33 |
rrs | 1472382 | n.537G>A | non_coding_transcript_exon_variant | 0.33 |
rrs | 1472389 | n.544G>A | non_coding_transcript_exon_variant | 0.43 |
rrs | 1472390 | n.545T>A | non_coding_transcript_exon_variant | 0.43 |
rrs | 1472391 | n.546C>T | non_coding_transcript_exon_variant | 0.43 |
rrs | 1472558 | n.713G>A | non_coding_transcript_exon_variant | 0.5 |
rrs | 1472569 | n.724G>A | non_coding_transcript_exon_variant | 0.29 |
rrs | 1472571 | n.726G>A | non_coding_transcript_exon_variant | 0.29 |
rrs | 1472581 | n.736A>C | non_coding_transcript_exon_variant | 0.33 |
rrs | 1472606 | n.761C>G | non_coding_transcript_exon_variant | 0.5 |
rrs | 1472616 | n.771G>A | non_coding_transcript_exon_variant | 0.5 |
rrs | 1472623 | n.778A>C | non_coding_transcript_exon_variant | 0.5 |
rrs | 1472707 | n.862A>G | non_coding_transcript_exon_variant | 0.6 |
rrs | 1472709 | n.864T>G | non_coding_transcript_exon_variant | 0.6 |
rrs | 1472714 | n.869A>T | non_coding_transcript_exon_variant | 0.6 |
rrs | 1472715 | n.870C>G | non_coding_transcript_exon_variant | 0.6 |
rrs | 1472716 | n.871C>A | non_coding_transcript_exon_variant | 0.67 |
rrs | 1472734 | n.889C>T | non_coding_transcript_exon_variant | 0.57 |
rrs | 1472741 | n.896G>A | non_coding_transcript_exon_variant | 0.57 |
rrs | 1472742 | n.897C>T | non_coding_transcript_exon_variant | 0.92 |
rrs | 1472744 | n.899A>G | non_coding_transcript_exon_variant | 0.37 |
rrs | 1472767 | n.922G>A | non_coding_transcript_exon_variant | 0.98 |
rrs | 1472781 | n.936C>T | non_coding_transcript_exon_variant | 0.96 |
rrs | 1472785 | n.940G>T | non_coding_transcript_exon_variant | 0.96 |
rrs | 1472786 | n.941C>G | non_coding_transcript_exon_variant | 0.96 |
rrs | 1472793 | n.948A>T | non_coding_transcript_exon_variant | 0.38 |
rrs | 1472814 | n.969G>A | non_coding_transcript_exon_variant | 0.93 |
rrs | 1472825 | n.980G>A | non_coding_transcript_exon_variant | 0.67 |
rrs | 1472887 | n.1042G>C | non_coding_transcript_exon_variant | 0.57 |
rrs | 1472952 | n.1107T>C | non_coding_transcript_exon_variant | 0.25 |
rrs | 1472955 | n.1110C>T | non_coding_transcript_exon_variant | 0.25 |
rrs | 1472956 | n.1111T>C | non_coding_transcript_exon_variant | 0.29 |
rrs | 1472957 | n.1112C>T | non_coding_transcript_exon_variant | 0.33 |
rrs | 1472982 | n.1137G>A | non_coding_transcript_exon_variant | 0.5 |
rrs | 1472987 | n.1142G>A | non_coding_transcript_exon_variant | 0.5 |
rrs | 1472990 | n.1145A>G | non_coding_transcript_exon_variant | 0.33 |
rrs | 1472993 | n.1148G>T | non_coding_transcript_exon_variant | 0.33 |
rrs | 1473002 | n.1157G>T | non_coding_transcript_exon_variant | 0.33 |
rrs | 1473004 | n.1159T>A | non_coding_transcript_exon_variant | 0.4 |
rrs | 1473008 | n.1163C>A | non_coding_transcript_exon_variant | 0.33 |
rrs | 1473009 | n.1164T>C | non_coding_transcript_exon_variant | 0.33 |
rrs | 1473035 | n.1190G>A | non_coding_transcript_exon_variant | 0.67 |
rrs | 1473055 | n.1210C>T | non_coding_transcript_exon_variant | 0.5 |
rrs | 1473056 | n.1211A>T | non_coding_transcript_exon_variant | 0.5 |
rrs | 1473066 | n.1221A>G | non_coding_transcript_exon_variant | 0.5 |
rrs | 1473097 | n.1252G>A | non_coding_transcript_exon_variant | 0.6 |
rrs | 1473100 | n.1255G>A | non_coding_transcript_exon_variant | 0.5 |
rrs | 1473104 | n.1259C>T | non_coding_transcript_exon_variant | 0.5 |
rrs | 1473110 | n.1265T>G | non_coding_transcript_exon_variant | 0.4 |
rrs | 1473111 | n.1266A>G | non_coding_transcript_exon_variant | 0.4 |
rrs | 1473121 | n.1276T>C | non_coding_transcript_exon_variant | 0.33 |
rrs | 1473122 | n.1277T>A | non_coding_transcript_exon_variant | 0.33 |
rrs | 1473134 | n.1289T>C | non_coding_transcript_exon_variant | 0.33 |
rrs | 1473139 | n.1294T>C | non_coding_transcript_exon_variant | 0.62 |
rrs | 1473147 | n.1302G>T | non_coding_transcript_exon_variant | 0.82 |
rrs | 1473148 | n.1303G>A | non_coding_transcript_exon_variant | 0.81 |
rrs | 1473163 | n.1318C>T | non_coding_transcript_exon_variant | 0.92 |
rrs | 1473164 | n.1319C>A | non_coding_transcript_exon_variant | 0.92 |
rrs | 1473164 | n.1319C>G | non_coding_transcript_exon_variant | 0.82 |
rrs | 1473172 | n.1327T>C | non_coding_transcript_exon_variant | 0.67 |
rrs | 1473173 | n.1328C>T | non_coding_transcript_exon_variant | 0.67 |
rrs | 1473177 | n.1332G>A | non_coding_transcript_exon_variant | 0.92 |
rrs | 1473191 | n.1346C>T | non_coding_transcript_exon_variant | 0.26 |
rrs | 1473192 | n.1347A>G | non_coding_transcript_exon_variant | 0.94 |
rrs | 1473204 | n.1359C>T | non_coding_transcript_exon_variant | 0.26 |
rrs | 1473205 | n.1360T>C | non_coding_transcript_exon_variant | 0.97 |
rrs | 1473206 | n.1361G>A | non_coding_transcript_exon_variant | 0.26 |
rrs | 1473226 | n.1381C>T | non_coding_transcript_exon_variant | 1.0 |
rrs | 1473248 | n.1403G>A | non_coding_transcript_exon_variant | 0.33 |
rrl | 1475753 | n.2096C>G | non_coding_transcript_exon_variant | 0.6 |
rrl | 1475775 | n.2118G>T | non_coding_transcript_exon_variant | 0.6 |
rrl | 1475783 | n.2126T>G | non_coding_transcript_exon_variant | 0.5 |
rrl | 1475787 | n.2130C>T | non_coding_transcript_exon_variant | 0.56 |
rrl | 1475791 | n.2134A>G | non_coding_transcript_exon_variant | 0.33 |
rrl | 1475803 | n.2146T>C | non_coding_transcript_exon_variant | 0.67 |
rrl | 1475804 | n.2147G>C | non_coding_transcript_exon_variant | 0.67 |
rrl | 1475816 | n.2159C>G | non_coding_transcript_exon_variant | 0.83 |
rrl | 1475817 | n.2160A>G | non_coding_transcript_exon_variant | 0.83 |
rrl | 1475877 | n.2220C>T | non_coding_transcript_exon_variant | 0.33 |
rrl | 1475881 | n.2224T>C | non_coding_transcript_exon_variant | 0.6 |
rrl | 1475896 | n.2239A>G | non_coding_transcript_exon_variant | 0.6 |
rrl | 1475897 | n.2240T>C | non_coding_transcript_exon_variant | 0.6 |
rrl | 1475898 | n.2241A>G | non_coding_transcript_exon_variant | 0.6 |
rrl | 1475899 | n.2242G>A | non_coding_transcript_exon_variant | 0.6 |
rrl | 1475916 | n.2259C>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475943 | n.2286G>A | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475952 | n.2295A>G | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475963 | n.2306G>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475970 | n.2313C>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476131 | n.2474C>T | non_coding_transcript_exon_variant | 0.75 |
rrl | 1476160 | n.2503T>C | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476200 | n.2543A>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476201 | n.2544C>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476313 | n.2656G>A | non_coding_transcript_exon_variant | 0.67 |
rrl | 1476336 | n.2679C>T | non_coding_transcript_exon_variant | 0.96 |
rrl | 1476338 | n.2681C>T | non_coding_transcript_exon_variant | 0.97 |
rrl | 1476356 | n.2699C>A | non_coding_transcript_exon_variant | 0.97 |
rrl | 1476357 | n.2700T>C | non_coding_transcript_exon_variant | 0.97 |
rrl | 1476358 | n.2701T>C | non_coding_transcript_exon_variant | 0.97 |
rrl | 1476359 | n.2702C>G | non_coding_transcript_exon_variant | 0.98 |
rrl | 1476369 | n.2712C>T | non_coding_transcript_exon_variant | 0.98 |
rrl | 1476381 | n.2724G>C | non_coding_transcript_exon_variant | 0.98 |
rrl | 1476382 | n.2725A>G | non_coding_transcript_exon_variant | 0.98 |
rrl | 1476383 | n.2726T>G | non_coding_transcript_exon_variant | 0.98 |
rrl | 1476384 | n.2727G>T | non_coding_transcript_exon_variant | 0.98 |
rrl | 1476408 | n.2751G>A | non_coding_transcript_exon_variant | 0.97 |
rrl | 1476411 | n.2754G>T | non_coding_transcript_exon_variant | 0.97 |
rrl | 1476425 | n.2768G>T | non_coding_transcript_exon_variant | 0.97 |
rrl | 1476428 | n.2771C>T | non_coding_transcript_exon_variant | 0.38 |
rrl | 1476429 | n.2772A>C | non_coding_transcript_exon_variant | 0.96 |
rrl | 1476442 | n.2785T>A | non_coding_transcript_exon_variant | 0.92 |
rrl | 1476443 | n.2786G>T | non_coding_transcript_exon_variant | 0.92 |
rrl | 1476455 | n.2798C>A | non_coding_transcript_exon_variant | 0.93 |
rrl | 1476456 | n.2799A>T | non_coding_transcript_exon_variant | 0.93 |
rrl | 1476463 | n.2806C>A | non_coding_transcript_exon_variant | 0.91 |
rrl | 1476466 | n.2809C>T | non_coding_transcript_exon_variant | 0.93 |
rrl | 1476470 | n.2813C>T | non_coding_transcript_exon_variant | 0.91 |
rrl | 1476483 | n.2826G>A | non_coding_transcript_exon_variant | 0.88 |
rrl | 1476501 | n.2844C>T | non_coding_transcript_exon_variant | 0.45 |
rrl | 1476506 | n.2849T>C | non_coding_transcript_exon_variant | 0.5 |
katG | 2154724 | p.Arg463Leu | missense_variant | 0.75 |
PPE35 | 2167926 | p.Leu896Ser | missense_variant | 1.0 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
thyA | 3073929 | c.543T>C | synonymous_variant | 0.25 |
thyA | 3073953 | c.519T>C | synonymous_variant | 0.36 |
thyA | 3073956 | c.516G>C | synonymous_variant | 0.36 |
thyA | 3073959 | c.513T>C | synonymous_variant | 0.36 |
thyA | 3073962 | p.Leu170Ile | missense_variant | 0.36 |
thyA | 3073977 | c.495A>G | synonymous_variant | 0.4 |
thyA | 3073989 | c.483T>C | synonymous_variant | 0.4 |
thyA | 3073992 | c.478_480delAGCinsTCG | synonymous_variant | 0.4 |
thyA | 3073999 | p.Arg158Lys | missense_variant | 0.44 |
thyA | 3074004 | c.468T>C | synonymous_variant | 0.44 |
thyA | 3074010 | c.462C>G | synonymous_variant | 0.44 |
ald | 3086739 | c.-81G>A | upstream_gene_variant | 1.0 |
ald | 3086788 | c.-32T>C | upstream_gene_variant | 1.0 |
fbiD | 3339538 | p.Ala141Pro | missense_variant | 0.5 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 1.0 |
Rv3236c | 3612813 | p.Thr102Ala | missense_variant | 1.0 |
embB | 4248846 | c.2336delC | frameshift_variant | 0.5 |
aftB | 4267647 | p.Asp397Gly | missense_variant | 1.0 |
ethA | 4326743 | p.Leu244Pro | missense_variant | 1.0 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |
gid | 4407927 | p.Glu92Asp | missense_variant | 1.0 |