EBG00000313325 - n.1346C>T


Drug resistance types
43 Sensitive 15 RR-TB 64 HR-TB 39 MDR-TB 50 Pre-XDR-TB 0 XDR-TB 118 Other
lineage Counts
lineage Count
lineage4.9 65
lineage4.6.1;lineage3.1.1 1
15
lineage4.6.1.1 4
lineage2.2.1 58
lineage3;lineage2.2 2
lineage4 15
lineage4.6.1;lineage3.1 2
lineage3 13
lineage3.1.1 2
lineage4.1.1.3 4
La1.7.1 1
lineage4.3.2 1
lineage3.1.2.1 2
lineage4.9;lineage4.3.4.1 1
La1.8.1 6
lineage4.4.1.1 3
lineage4.5 4
lineage4.9.1 2
lineage4.3.2.1 2
lineage2.2.1.1 5
lineage4.3.3 4
lineage1.2.1.2.1 2
lineage1.1.3.2 3
lineage1.1.3 1
lineage2.2.2 22
lineage4.9;lineage4.3 1
lineage4.8 10
lineage4.3.4.1 1
lineage1.1.3.1 1
lineage2.2.2;lineage2.2.1 2
lineage4.4.2 5
lineage4.1.2.1 4
lineage1.1.2 3
lineage4.1.2 5
lineage4;lineage3 1
lineage4.7 2
lineage4.2.1.1 3
lineage4.1.1.2 1
lineage2.2 24
lineage4.3.4.2.1 5
lineage4.2.1 2
La1.8.2 3
lineage4.6.1.2 2
lineage4.9;La1.8.1 1
lineage4.3.4.2 3
La1.2 4
lineage1.1.1.1 1
lineage1.1.1 1
lineage4;lineage2.2.2 1
lineage4.9;lineage2 1
lineage4.9;lineage2.2.1 1
lineage4.9;lineage4.2.1 1
spoligotype Counts
spoligotype Count
None 329
Geographic prevalence
Country level data for this variant is available for 5 isolates.
Statisctical support
Not enough data to calculate support.
Samples
ID Drug resistance Lineage Country iso2
SRR1173190 Sensitive lineage4.9 None
SRR1173269 Sensitive lineage4.9 None
SRR1173293 MDR-TB lineage4.6.1;lineage3.1.1 None
SRR1173310 MDR-TB None
SRR1173335 Sensitive lineage4.9 None
SRR1173344 Sensitive lineage4.6.1.1 None
SRR1173343 Pre-XDR-TB lineage2.2.1 None
SRR1173380 Pre-XDR-TB lineage3;lineage2.2 None
SRR1173384 Other lineage4 None
SRR1173421 RR-TB lineage4.9 None
SRR1173704 Sensitive lineage4.6.1.1 None
SRR1173508 Sensitive lineage4.9 None
SRR1173416 Other lineage4.9 None
SRR1173565 MDR-TB lineage4.6.1;lineage3.1 None
SRR1173768 Sensitive lineage4.9 None
SRR1173719 HR-TB lineage3 None
SRR1173764 Sensitive lineage4.9 None
SRR1173705 Other lineage4.9 None
SRR1173706 Other lineage4.9 None
SRR1173720 Other lineage4.9 None
SRR1173766 Sensitive lineage4.9 None
SRR1173799 MDR-TB lineage3.1.1 None
SRR1173833 Other lineage4.9 None
SRR1173800 Pre-XDR-TB lineage3;lineage2.2 None
SRR1173865 Sensitive lineage4.9 None
SRR1173832 MDR-TB lineage4.6.1;lineage3.1 None
SRR1174277 Pre-XDR-TB lineage2.2.1 None
SRR1181161 Other lineage4.9 None
SRR1180252 Other lineage4.9 None
SRR1180982 Other lineage2.2.1 None
SRR1181250 Other lineage4.9 None
SRR1183080 RR-TB lineage4.9 None
SRR1181368 Other lineage4.9 None
SRR1183958 Other lineage2.2.1 None
SRR1196582 Other lineage4.9 None
SRR1184383 Other lineage4.9 None
SRR13591377 Sensitive lineage4.1.1.3 None
SRR11972420 MDR-TB lineage2.2.1 None
SRR12882020 Other lineage3.1.1 None
SRR13199746 Other La1.7.1 None
SRR13591376 Sensitive lineage4.3.2 None
SRR12882631 Other lineage3.1.2.1 None
SRR13861449 Other lineage4.9 None
SRR13861324 Other lineage4.9 None
SRR13591410 Other lineage4.9;lineage4.3.4.1 None
SRR13861142 Other lineage4.9 None
SRR13861411 HR-TB lineage4.9 None
SRR13861725 Other lineage4.9 None
SRR13861727 Other lineage4.9 None
SRR1791940 Other La1.8.1 None
SRR17567930 Other lineage4.4.1.1 None
SRR1792140 Other La1.8.1 None
SRR19612366 Other lineage4.5 None
SRR19304064 MDR-TB lineage2.2.1 None
SRR19303775 Other lineage3 None
SRR2101505 MDR-TB lineage4.9.1 None
SRR2101628 Other lineage4.3.2.1 None
SRR2101643 Other lineage2.2.1 None
SRR2101691 Other lineage2.2.1 None
SRR2101684 Other lineage2.2.1.1 None
SRR21685367 MDR-TB lineage2.2.1 None
SRR21675949 Other lineage4.3.3 None
SRR21686601 Other lineage1.2.1.2.1 None
ERR176781 Sensitive lineage1.1.3.2 None
SRR21711124 Other lineage1.1.3 None
SRR21728339 Other lineage3 None
SAMN02360583 HR-TB lineage2.2.2 None
SAMN02419540 Other lineage2.2.1 None
ERR4814573 Other lineage1.1.3.2 None
ERR192071 Other La1.8.1 None
ERR164004 Sensitive lineage4.9;lineage4.3 None
ERR2228941 Other lineage4.8 None
SAMN02360581 HR-TB lineage2.2.1 None
ERR2229033 Other lineage4.8 None
SAMN02360556 Pre-XDR-TB lineage2.2.2 None
ERR176470 Other lineage4.3.4.1 mw
SAMN02567670 Sensitive lineage4.6.1.1 None
ERR4816454 Sensitive lineage1.1.3.1 None
ERR1034791 RR-TB None
SAMN02567685 Pre-XDR-TB lineage2.2.1 None
SAMN02360590 MDR-TB lineage2.2.2 None
SAMN02360571 HR-TB lineage2.2.2;lineage2.2.1 None
ERR2229780 Other lineage4.9 None
ERR2229781 Other lineage4.9 None
SAMN02360586 HR-TB lineage2.2.1 None
ERR2229332 RR-TB lineage4.8 None
ERR2229336 Other lineage4.8 None
ERR2229358 Other lineage4.8 None
ERR2228822 Other lineage4.9 None
ERR2228888 Other lineage4.8 None
ERR2228874 Other lineage4 None
ERR2228873 Other lineage4.8 None
ERR2228859 RR-TB lineage4 None
SAMN02360570 Pre-XDR-TB lineage2.2.1 None
SAMN02360562 Pre-XDR-TB lineage4.4.2 None
SAMN02360595 Pre-XDR-TB lineage2.2.2 None
SAMN02360591 Pre-XDR-TB lineage2.2.2 None
ERR4817817 Sensitive lineage3 None
SAMN02360574 HR-TB lineage2.2.1 None
SAMN02398710 MDR-TB lineage2.2.2 None
SAMN02360580 HR-TB lineage2.2.1 None
ERR2446433 Other lineage4.1.2.1 None
ERR245790 Sensitive None
SAMN02360577 HR-TB lineage3 None
SAMN02360563 Pre-XDR-TB lineage2.2.2 None
SRR5341390 HR-TB lineage1.1.2 None
SRR5341396 Other lineage4 None
SRR5341375 Other lineage4.9 None
SRR5341387 Other lineage4 None
SRR5341407 Pre-XDR-TB lineage3.1.2.1 None
SRR5341312 Pre-XDR-TB lineage2.2.1 None
SRR5341425 Other lineage4 None
SAMN02360564 Pre-XDR-TB lineage2.2.1 None
ERR400540 Sensitive lineage1.1.3.2 gb
SRR5341417 Pre-XDR-TB lineage3 None
SRR5341423 Other lineage1.1.2 None
ERR108444 Other lineage4.1.2 ru
SRR5341319 Other lineage3 None
SAMN02360585 HR-TB lineage4.5 None
SAMN02360579 HR-TB lineage2.2.1.1 None
SRR5341469 Other lineage4 None
SRR5382721 Other La1.8.1 None
SRR5526841 MDR-TB lineage2.2.1.1 None
SRR6045036 Other lineage4;lineage3 None
SRR6044830 Other lineage4.9 None
SRR6046152 Other lineage4.9 None
ERR4796817 Pre-XDR-TB lineage3 in
SRR6046015 Other lineage4.9 None
SRR6045162 Sensitive lineage4.9 None
ERR2851371 Other lineage4.9 None
SRR6397406 Other lineage4.1.2.1 None
SRR6389899 Other lineage4.1.2 None
SRR6152886 HR-TB lineage3 None
SRR6153042 Other lineage4.4.1.1 None
SRR6153036 Other None
SRR6152979 Other lineage4.7 None
SRR6397642 RR-TB None
SRR6397727 Other lineage4.2.1.1 None
SRR6397770 Other lineage4.7 None
ERR2503565 Sensitive lineage4.2.1.1 fi
ERR502470 RR-TB lineage4.9 None
SRR6982088 Other lineage4.1.1.2 None
SRR6856094 Other lineage2.2.1 None
SRR6982494 Other lineage2.2.2 None
SRR6982140 Other lineage2.2 None
SRR6832507 Other lineage4.8 None
SRR6982194 Other lineage2.2.1 None
SRR6832359 Sensitive lineage2.2.1 None
SRR6832504 MDR-TB lineage2.2.1 None
SRR6982275 Other lineage2.2.1 None
ERR5087846 Other La1.8.1 None
SRR6981966 Other lineage2.2.1 None
SRR6982383 Other lineage4.3.2.1 None
SRR6855896 Other lineage4.3.4.2.1 None
SRR6982400 Other lineage2.2.1 None
ERR5162126 Sensitive lineage4.9 None
ERR502942 Sensitive lineage4.9 None
SRR7131185 Other lineage4.1.2.1 None
SRR7131047 MDR-TB lineage4.3.3 None
SRR8073606 Other La1.8.1 None
SRR7131160 Sensitive lineage3 None
SRR7645827 Other lineage4.2.1.1 None
SRR7131296 Other lineage4.3.3 None
SRR7755706 MDR-TB lineage4.2.1 None
SRR7645834 Other lineage2.2.1 None
ERR323057 Sensitive lineage4.9 None
DRR184644 HR-TB lineage2.2.1 None
SRR7851307 Other La1.8.2 None
ERR323067 Sensitive lineage4.3.4.2.1 None
ERR036215 Other lineage4.8 None
ERR036194 Other lineage4.6.1.2 None
ERR024351 MDR-TB lineage2.2.1 None
ERR1023527 RR-TB lineage4 None
ERR037235 Sensitive lineage4.9 None
ERR037234 Sensitive lineage4.9 None
ERR037529 Other lineage4.3.4.2.1 None
ERR1034722 Other lineage4.9 None
ERR1034692 Other lineage1.2.1.2.1 None
ERR1144990 Other lineage4.8 None
ERR10796619 Other lineage4.3.3 None
ERR126611 Sensitive lineage4.9.1 None
ERR3283034 Sensitive lineage4.9 None
ERR3468549 Sensitive lineage4.9 None
ERR3439235 Sensitive lineage4.9 None
ERR3439294 Other lineage4.9 None
ERR3797078 Sensitive lineage4.9 None
ERR3468754 Sensitive lineage4.9 None
ERR4188072 Other lineage4.9;La1.8.1 None
ERR3806453 Other lineage4.3.4.2 None
ERR4132447 HR-TB lineage4 None
ERR4188158 Other lineage4.9 None
ERR473337 Other lineage4.1.2 None
ERR473311 Sensitive lineage4.9 None
ERR4769424 Sensitive lineage4.9 None
ERR473340 Sensitive lineage1.1.2 None
ERR4769429 Other lineage4.9 None
ERR6362858 Pre-XDR-TB lineage2.2.2 None
ERR5865343 MDR-TB lineage2.2.1 None
ERR5987219 Pre-XDR-TB lineage2.2.2 None
ERR6201802 Other La1.2 None
ERR6201843 Other La1.2 None
ERR6338288 Other La1.2 None
ERR5863929 Pre-XDR-TB lineage2.2.1 None
ERR5864889 MDR-TB lineage2.2.1 None
ERR6140667 Other La1.8.2 None
ERR6149876 Other La1.8.2 None
ERR6198389 Other La1.2 None
ERR751414 MDR-TB lineage4 None
ERR736850 Sensitive lineage4.9 None
ERR736825 Sensitive lineage4.9 None
ERR2124091 Pre-XDR-TB lineage4.3.4.2 None
ERR036225 Other lineage4.3.4.2.1 None
ERR2124090 MDR-TB lineage2.2.1 None
ERR752012 HR-TB lineage1.1.1.1 None
ERR773804 Sensitive lineage4.9 None
ERR7801178 Other lineage4.3.4.2.1 None
ERR751865 Other lineage1.1.1 None
ERR2124088 Other lineage4.4.1.1 None
ERR970453 RR-TB lineage4.1.2 None
ERR970458 RR-TB lineage4.1.1.3 None
ERR9786844 Other lineage4.3.4.2 None
ERR970455 RR-TB lineage4.1.2 None
ERR972802 RR-TB lineage4.1.1.3 None
ERR970457 RR-TB lineage4.1.1.3 None
ERR972801 RR-TB lineage2.2.1.1 None
ERR987704 HR-TB lineage4.6.1.2 None
SRR1013530 HR-TB lineage4.9 None
ERR987733 RR-TB lineage4.6.1.1 None
SRR1013554 Pre-XDR-TB lineage2.2 None
SRR1013566 Pre-XDR-TB lineage4.4.2 None
SRR1013553 Pre-XDR-TB lineage2.2 None
SRR1013567 Pre-XDR-TB lineage2.2.2 None
SRR1013568 Pre-XDR-TB lineage2.2 None
SRR1013565 Pre-XDR-TB lineage4.4.2 None
SRR1013577 MDR-TB lineage2.2 None
SRR1013570 Pre-XDR-TB lineage2.2.1 None
SRR1013569 Pre-XDR-TB lineage2.2.1 None
SRR1013578 MDR-TB lineage2.2 None
SRR1013589 HR-TB lineage2.2.1 None
SRR1013583 HR-TB lineage2.2 None
SRR1013584 HR-TB lineage2.2 None
SRR1013590 HR-TB lineage2.2.1 None
SRR1013581 Pre-XDR-TB lineage2.2 None
SRR1013582 Pre-XDR-TB lineage2.2.1 None
SRR1013596 HR-TB lineage3 None
SRR1013595 HR-TB lineage3 None
SRR1013599 HR-TB None
SRR1013597 HR-TB lineage2.2 None
SRR1013598 HR-TB None
SRR1013601 HR-TB lineage2.2.1 None
SRR1013600 HR-TB lineage2.2.1.1 None
SRR1013602 HR-TB lineage2.2.1 None
SRR1013607 HR-TB lineage2.2 None
SRR1013604 HR-TB lineage2.2.1 None
SRR1013603 HR-TB lineage2.2.1 None
SRR1013608 HR-TB lineage2.2 None
SRR1013610 HR-TB lineage4 None
SRR1013609 HR-TB lineage4 None
SRR1013611 HR-TB lineage4 None
SRR1013614 HR-TB lineage2.2 None
SRR1013613 HR-TB lineage2.2.1 None
SRR1013621 Pre-XDR-TB lineage2.2 None
SRR1013617 MDR-TB None
SRR1013612 HR-TB lineage4 None
SRR1013618 MDR-TB None
SRR1013622 Pre-XDR-TB lineage2.2 None
SRR1013633 MDR-TB lineage2.2 None
SRR1013630 Pre-XDR-TB lineage2.2 None
SRR1013629 Pre-XDR-TB lineage2.2 None
SRR1047993 HR-TB lineage2.2.1 None
SRR1013634 MDR-TB lineage2.2 None
SRR1048853 Pre-XDR-TB lineage4;lineage2.2.2 None
SRR1047996 MDR-TB lineage2.2.2 None
SRR1048852 Pre-XDR-TB lineage4.9 None
SRR1048867 Pre-XDR-TB lineage2.2.2 None
SRR1048865 Pre-XDR-TB lineage4.4.2 None
SRR1048866 Pre-XDR-TB lineage4.4.2 None
SRR1048870 Pre-XDR-TB lineage2.2 None
SRR1048868 Pre-XDR-TB lineage2.2.2 None
SRR1048869 Pre-XDR-TB lineage2.2.2 None
SRR1048885 MDR-TB None
SRR1048886 MDR-TB lineage2.2 None
SRR1048965 Pre-XDR-TB lineage2.2.1 None
SRR1048969 MDR-TB lineage2.2.2 None
SRR1048968 HR-TB lineage2.2.2;lineage2.2.1 None
SRR1048966 Pre-XDR-TB lineage2.2.1 None
SRR1048975 HR-TB lineage2.2.1 None
SRR1048974 HR-TB lineage2.2.1 None
SRR1048988 HR-TB lineage2.2 None
SRR1048980 HR-TB lineage3 None
SRR1048983 HR-TB None
SRR1048982 HR-TB None
SRR1048985 HR-TB lineage2.2.1 None
SRR1048986 HR-TB lineage2.2.1 None
SRR1048991 HR-TB lineage2.2.2 None
SRR1048987 HR-TB lineage2.2.1 None
SRR1048994 HR-TB lineage4.9 None
SRR1048992 HR-TB lineage2.2.2 None
SRR1048993 HR-TB lineage4.9 None
SRR1048997 HR-TB lineage2.2.1 None
SRR1048995 HR-TB lineage4.5 None
SRR1048996 HR-TB lineage4.5 None
SRR1049005 MDR-TB lineage2.2.2 None
SRR1048998 HR-TB lineage2.2.1 None
SRR1049004 MDR-TB lineage2.2.2 None
SRR1049023 HR-TB lineage2.2 None
SRR1049006 MDR-TB lineage2.2.2 None
SRR1049022 HR-TB lineage4.9;lineage2 None
SRR1049007 Pre-XDR-TB lineage2.2.2 None
SRR1049027 Pre-XDR-TB None
SRR1049026 Pre-XDR-TB None
SRR1049040 MDR-TB lineage2.2.1 None
SRR1062864 Sensitive lineage4.9;lineage2.2.1 None
SRR1049041 MDR-TB None
SRR1166181 MDR-TB lineage4 None
SRR1062869 Pre-XDR-TB lineage4.9 None
SRR11349188 MDR-TB lineage4.1.2.1 None
SRR1144744 HR-TB lineage2.2.1 None
SRR1144759 MDR-TB lineage2.2 None
SRR1062868 HR-TB lineage4.9 None
SRR10869241 Pre-XDR-TB lineage2.2.1 None
SRR1144809 HR-TB lineage2.2.1 None
SRR1159158 Other lineage2.2.1 None
SRR1162501 Other lineage2.2.1 None
SRR1173139 Sensitive lineage4.9 None
SRR1168955 MDR-TB lineage4.9;lineage4.2.1 None
SRR1172171 Pre-XDR-TB lineage4.2.1 None
SRR1172808 Other lineage4.9 None
SRR1173025 Other lineage4.9 None