EBG00000313325 - n.1346C>T
Drug resistance types
88 Sensitive
8 RR-TB
59 HR-TB
17 MDR-TB
32 Pre-XDR-TB
0 XDR-TB
96 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage2.2.1.1;lineage4 | 1 |
| lineage4.9 | 79 |
| lineage2.2.2;lineage4 | 7 |
| lineage2.2.1 | 45 |
| lineage4.3.3 | 2 |
| lineage2.2.1.1 | 6 |
| lineage2.2;lineage4 | 2 |
| lineage4.8 | 10 |
| lineage3 | 10 |
| lineage4.3.4.2.1 | 6 |
| lineage2.2.1;lineage2.2.2 | 5 |
| lineage2.2.2 | 28 |
| lineage4.2.1 | 2 |
| La1.8.2 | 3 |
| lineage4.3.2 | 1 |
| lineage3.1.1 | 2 |
| lineage4.2;lineage4.9 | 1 |
| lineage4.1.2 | 5 |
| lineage1.1.3.2 | 2 |
| lineage4.4.1.1 | 3 |
| La1.8.1 | 7 |
| La1.7.1 | 3 |
| lineage4.2.1.1 | 2 |
| La1.2 | 4 |
| lineage4.4.2 | 5 |
| lineage1.1.2 | 4 |
| lineage4.9.1 | 4 |
| lineage1.2.1.2.1 | 1 |
| lineage2;lineage4.9 | 2 |
| lineage3.1;lineage4.6.1.1 | 1 |
| lineage4.3.2.1 | 1 |
| lineage4.3.2.1;lineage4.9 | 1 |
| lineage4.6.1.1 | 4 |
| lineage3.1.1;lineage4.6.1.1 | 1 |
| lineage2.2.1;lineage3 | 1 |
| lineage4.7 | 1 |
| lineage4.3.4.2 | 3 |
| lineage4.5 | 5 |
| lineage4.1.1.3 | 3 |
| lineage4.6.1.2 | 2 |
| lineage5.1.1 | 2 |
| lineage4.3.2;lineage4.9 | 1 |
| lineage2 | 1 |
| lineage4.1.2.1 | 2 |
| lineage2.2;lineage4.9 | 1 |
| lineage4.1.1.2 | 1 |
| lineage3.1.2.1 | 2 |
| lineage2.2;lineage3 | 1 |
| lineage3;lineage4.9 | 1 |
| lineage4 | 4 |
| lineage1.2.1.2 | 1 |
| La1.2.BCG | 2 |
| lineage4.3.4.1 | 1 |
| lineage1.1.1 | 1 |
| lineage2.2.1;lineage4 | 2 |
| lineage1.1.3 | 1 |
| lineage1.1.1.1 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 300 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR1013599 | HR-TB | lineage2.2.1.1;lineage4 | None | SRR7443756 | Sensitive | lineage4.9 | None | SRR1049006 | HR-TB | lineage2.2.2;lineage4 | None | SRR6982194 | Other | lineage2.2.1 | None | SRR5341469 | HR-TB | lineage4.9 | None | SRR1048966 | MDR-TB | lineage2.2.1 | None | ERR4132447 | Other | lineage4.3.3 | None | SAMN02360579 | HR-TB | lineage2.2.1.1 | None | SRR1048985 | HR-TB | lineage2.2.1 | None | SRR1048992 | HR-TB | lineage2.2;lineage4 | None | SRR5341387 | Other | lineage4.9 | None | ERR2228873 | Other | lineage4.8 | None | SRR1048981 | HR-TB | lineage3 | None | ERR036225 | Other | lineage4.3.4.2.1 | None | SRR1048969 | HR-TB | lineage2.2.1;lineage2.2.2 | None | SRR13591410 | Other | lineage4.9 | None | SRR1048886 | HR-TB | lineage2.2.2;lineage4 | None | SRR1049007 | HR-TB | lineage2.2.2 | None | SRR1166181 | Sensitive | lineage4.2.1 | None | ERR6149876 | Other | La1.8.2 | None | ERR773804 | Sensitive | lineage4.9 | None | SRR13591376 | Sensitive | lineage4.3.2 | None | SRR1013604 | HR-TB | lineage2.2.1 | None | SRR7443724 | Sensitive | lineage4.9 | None | SRR12882020 | Other | lineage3.1.1 | None | ERR1034791 | RR-TB | lineage4.9 | None | ERR2228888 | Other | lineage4.8 | None | SAMN02360577 | HR-TB | lineage3 | None | ERR736825 | Sensitive | lineage4.9 | None | SRR1173705 | Other | lineage4.9 | None | SRR1168955 | Sensitive | lineage4.2;lineage4.9 | None | DRR184644 | HR-TB | lineage2.2.1 | None | ERR970455 | RR-TB | lineage4.1.2 | None | SRR7443739 | Sensitive | lineage4.9 | None | SRR21728339 | Other | lineage3 | None | SRR1162501 | Other | lineage2.2.1 | None | ERR245790 | Sensitive | lineage4.3.4.2.1 | None | ERR037529 | Other | lineage4.3.4.2.1 | None | ERR4796817 | Pre-XDR-TB | lineage3 | in | SAMN02360583 | HR-TB | lineage2.2.2 | None | ERR400540 | Sensitive | lineage1.1.3.2 | gb | SRR6153042 | Other | lineage4.4.1.1 | None | SRR7443725 | Sensitive | lineage4.9 | None | SRR7851307 | Other | La1.8.2 | None | SRR1013601 | HR-TB | lineage2.2.1 | None | ERR6362858 | Pre-XDR-TB | lineage2.2.2 | None | SRR1048993 | HR-TB | lineage4.9 | None | SRR1173508 | Sensitive | lineage4.9 | None | SRR1173719 | Other | lineage4.9 | None | SRR7443785 | Sensitive | lineage4.9 | None | SRR1013598 | Sensitive | lineage2.2.2;lineage4 | None | SRR1792140 | Other | La1.8.1 | None | SRR1180252 | Other | lineage4.9 | None | SRR6389899 | Other | lineage4.1.2 | None | SRR7236253 | Other | La1.7.1 | None | SRR1048994 | HR-TB | lineage4.9 | None | ERR1034722 | Other | lineage4.9 | None | SRR2101691 | Other | lineage2.2.1 | None | ERR2503565 | Sensitive | lineage4.2.1.1 | fi | ERR6198389 | Other | La1.2 | None | SRR1013596 | Sensitive | lineage3 | None | ERR2228941 | Other | lineage4.8 | None | SRR1049005 | MDR-TB | lineage2.2.2 | None | ERR4188072 | Sensitive | lineage4.9 | None | ERR164004 | Sensitive | lineage4.9 | None | SAMN02360556 | Pre-XDR-TB | lineage2.2.2 | None | SRR1181161 | Other | lineage4.9 | None | SRR1173865 | Sensitive | lineage4.9 | None | ERR6201802 | Other | La1.2 | None | SRR1013565 | Pre-XDR-TB | lineage4.4.2 | None | SRR1013568 | Pre-XDR-TB | lineage2.2.2 | None | SRR7443750 | Sensitive | lineage4.9 | None | SRR1013583 | Sensitive | lineage2.2.2 | None | SRR1173384 | Other | lineage4.9 | None | SRR1048866 | Pre-XDR-TB | lineage4.4.2 | None | SRR7131160 | Sensitive | lineage3 | None | SRR1048869 | HR-TB | lineage2.2.1;lineage2.2.2 | None | SRR1013607 | HR-TB | lineage2.2.2 | None | ERR1140785 | Sensitive | lineage1.1.2 | None | SRR5526841 | MDR-TB | lineage2.2.1.1 | None | SRR7443722 | Sensitive | lineage4.9 | None | SRR1048998 | HR-TB | lineage2.2.1 | None | SRR7443737 | Sensitive | lineage4.9 | None | SRR1173025 | Other | lineage4.9 | None | ERR176781 | Sensitive | lineage1.1.3.2 | None | SRR1173269 | Sensitive | lineage4.9 | None | SRR1013608 | Sensitive | lineage2.2.2 | None | ERR1023527 | Other | lineage4.9.1 | None | SRR1013554 | MDR-TB | lineage2.2.2;lineage4 | None | SRR7443734 | Sensitive | lineage4.9 | None | SRR1048870 | HR-TB | lineage2.2.1;lineage2.2.2 | None | SRR7444102 | Sensitive | lineage4.9 | None | ERR972801 | RR-TB | lineage2.2.1.1 | None | SAMN02360591 | Pre-XDR-TB | lineage2.2.2 | None | ERR6140667 | Other | La1.8.2 | None | SRR7443761 | Sensitive | lineage4.9 | None | ERR4769424 | Sensitive | lineage4.9 | None | ERR2229358 | Other | lineage4.8 | None | SRR7645834 | Other | lineage2.2.1 | None | SRR1013530 | Other | lineage4.9.1 | None | SRR6855896 | Other | lineage4.3.4.2.1 | None | ERR1034692 | Other | lineage1.2.1.2.1 | None | SRR6397642 | Other | lineage4.4.1.1 | None | ERR970453 | RR-TB | lineage4.1.2 | None | SRR13199746 | Other | La1.7.1 | None | SRR1048853 | HR-TB | lineage2;lineage4.9 | None | SAMN02360564 | Pre-XDR-TB | lineage2.2.1 | None | ERR502470 | RR-TB | lineage4.9 | None | SRR1173565 | MDR-TB | lineage3.1;lineage4.6.1.1 | None | SAMN02360562 | Pre-XDR-TB | lineage4.4.2 | None | SRR7443749 | Sensitive | lineage4.9 | None | SRR7240448 | Other | La1.8.1 | None | SRR2101628 | Other | lineage4.3.2.1 | None | SRR7443723 | Sensitive | lineage4.9 | None | SRR5341390 | HR-TB | lineage1.1.2 | None | SRR7443731 | Sensitive | lineage4.9 | None | SRR1062868 | Sensitive | lineage4.3.2.1;lineage4.9 | None | SRR7444098 | Sensitive | lineage4.9 | None | SRR1172808 | Other | lineage4.9 | None | ERR987733 | Other | lineage4.6.1.1 | None | SRR1181368 | Other | lineage4.9 | None | SRR30182724 | Sensitive | lineage3 | None | SRR11342646 | HR-TB | lineage3 | None | SRR1173764 | Sensitive | lineage4.9 | None | SRR7443747 | Sensitive | lineage4.9 | None | SRR7444103 | Sensitive | lineage4.9 | None | ERR2229336 | Other | lineage4.8 | None | SRR1144809 | HR-TB | lineage2.2.1 | None | SRR1173293 | Other | lineage3.1.1;lineage4.6.1.1 | None | SRR1173800 | Pre-XDR-TB | lineage2.2.1;lineage3 | None | SRR1173310 | Other | lineage3.1.1 | None | ERR6201843 | Other | La1.2 | None | SRR1791940 | Other | La1.8.1 | None | ERR1144990 | Other | lineage4.8 | None | SRR1048867 | Pre-XDR-TB | lineage2.2.2 | None | SRR6856094 | Other | lineage2.2.1 | None | SRR7443768 | Sensitive | lineage4.9 | None | SRR7443790 | Sensitive | lineage4.9 | None | SRR1013602 | HR-TB | lineage2.2.1 | None | SRR6152979 | Other | lineage4.7 | None | SRR6981966 | Other | lineage2.2.1 | None | ERR473311 | Sensitive | lineage4.9 | None | SRR7755706 | MDR-TB | lineage4.2.1 | None | SRR7444074 | Sensitive | lineage4.9 | None | SRR7236216 | Other | La1.8.1 | None | ERR2124091 | Pre-XDR-TB | lineage4.3.4.2 | None | SRR5341423 | Other | lineage1.1.2 | None | ERR5987219 | Pre-XDR-TB | lineage2.2.2 | None | SRR1173416 | Sensitive | lineage4.9 | None | SRR1013612 | Sensitive | lineage4.5 | None | SRR19612366 | Other | lineage4.5 | None | ERR2124088 | Other | lineage4.4.1.1 | None | ERR2229780 | Other | lineage4.9 | None | ERR970457 | RR-TB | lineage4.1.1.3 | None | ERR323067 | Sensitive | lineage4.3.4.2.1 | None | ERR036194 | Other | lineage4.6.1.2 | None | SRR7443733 | Sensitive | lineage4.9 | None | SAMN02360580 | HR-TB | lineage2.2.1 | None | SRR1173421 | Other | lineage4.9 | None | ERR1140774 | Sensitive | lineage5.1.1 | None | SRR5341312 | Pre-XDR-TB | lineage2.2.1 | None | SAMN02419540 | Other | lineage2.2.1 | None | SRR1048865 | Pre-XDR-TB | lineage4.4.2 | None | SRR1013532 | Sensitive | lineage4.3.2;lineage4.9 | None | SRR1013553 | MDR-TB | lineage2.2.2 | None | SRR1048983 | HR-TB | lineage2.2.1.1 | None | SRR7645827 | Other | lineage4.2.1.1 | None | SRR1173706 | Other | lineage4.9 | None | SRR1047996 | MDR-TB | lineage2.2.2 | None | SRR1048868 | Pre-XDR-TB | lineage2.2.2 | None | SRR1048885 | HR-TB | lineage2.2;lineage4 | None | ERR6338288 | Other | La1.2 | None | SAMN02360590 | MDR-TB | lineage2.2.2 | None | ERR5087846 | Other | La1.8.1 | None | ERR4769429 | Other | lineage4.9 | None | SRR1049040 | HR-TB | lineage2 | None | ERR5864889 | MDR-TB | lineage2.2.1 | None | SRR1013613 | Sensitive | lineage2.2.1 | None | SRR1048982 | HR-TB | lineage2.2.1.1 | None | SRR7443752 | Sensitive | lineage4.9 | None | SRR1062869 | Sensitive | lineage4.9.1 | None | ERR1140783 | Sensitive | lineage2.2.2 | None | SAMN02360585 | HR-TB | lineage4.5 | None | SRR1013569 | Pre-XDR-TB | lineage2.2.1 | None | SAMN02360574 | HR-TB | lineage2.2.1 | None | SRR1013584 | HR-TB | lineage2.2.2 | None | SRR13591377 | Sensitive | lineage4.1.1.3 | None | ERR1140793 | Sensitive | lineage5.1.1 | None | SRR6982494 | Other | lineage2.2.2 | None | SRR7131185 | Other | lineage4.1.2.1 | None | SRR1013629 | Pre-XDR-TB | lineage2.2.2 | None | SRR1013581 | Pre-XDR-TB | lineage2.2.1 | None | ERR473340 | Sensitive | lineage1.1.2 | None | ERR2228859 | Other | lineage4.8 | None | SRR8073606 | Other | La1.8.1 | None | SRR1048988 | HR-TB | lineage2.2.1 | None | SRR1062864 | Sensitive | lineage4.9 | None | ERR108444 | Other | lineage4.1.2 | ru | SRR1173766 | Sensitive | lineage4.9 | None | SRR1049026 | HR-TB | lineage2.2;lineage4.9 | None | SRR1173344 | Sensitive | lineage4.6.1.1 | None | SRR7443738 | Sensitive | lineage4.9 | None | SRR6982088 | Other | lineage4.1.1.2 | None | ERR473337 | Other | lineage4.1.2 | None | ERR9786844 | Other | lineage4.3.4.2 | None | SRR5341407 | Pre-XDR-TB | lineage3.1.2.1 | None | SRR7443730 | Sensitive | lineage4.9 | None | SRR1173380 | Pre-XDR-TB | lineage2.2;lineage3 | None | SRR5341396 | Other | lineage3;lineage4.9 | None | SRR7443769 | Sensitive | lineage4 | None | SRR1173833 | Other | lineage4.9 | None | ERR1140791 | Sensitive | lineage1.2.1.2 | None | SRR1013633 | MDR-TB | lineage2.2.2 | None | ERR5865343 | MDR-TB | lineage2.2.1 | None | SRR1013630 | Pre-XDR-TB | lineage2.2.2;lineage4 | None | SRR11972420 | MDR-TB | lineage2.2.1 | None | SRR7443767 | Sensitive | lineage4.9 | None | SRR7443732 | Sensitive | lineage4.9 | None | SRR7443751 | Sensitive | lineage4.9 | None | SAMN02360563 | Pre-XDR-TB | lineage2.2.2 | None | SAMN02360570 | Pre-XDR-TB | lineage2.2.1 | None | SRR1013621 | Pre-XDR-TB | lineage2.2.2 | None | SRR1048996 | Sensitive | lineage4.5 | None | SRR21685367 | MDR-TB | lineage2.2.1 | None | SRR7236372 | Other | La1.8.1 | None | SRR1048980 | HR-TB | lineage3 | None | SRR1049004 | HR-TB | lineage2.2.2 | None | SRR1173704 | Sensitive | lineage4.6.1.1 | None | SRR1013609 | Sensitive | lineage4 | None | SRR1013611 | Sensitive | lineage4.5 | None | SRR1048997 | HR-TB | lineage2.2.1 | None | SRR1144744 | HR-TB | lineage2.2.1 | None | ERR323057 | Sensitive | lineage4.9 | None | SRR12882631 | Other | lineage3.1.2.1 | None | SRR5341375 | Other | lineage4.9 | None | SRR1013589 | HR-TB | lineage2.2.1 | None | SRR1013634 | MDR-TB | lineage2.2.2 | None | SRR1013597 | Sensitive | lineage2.2.2;lineage4 | None | SRR1013590 | HR-TB | lineage2.2.1 | None | SRR7443757 | Sensitive | lineage4.9 | None | ERR2229033 | Other | lineage4.8 | None | SRR1048991 | HR-TB | lineage2;lineage4.9 | None | ERR2124090 | MDR-TB | lineage2.2.1 | None | SRR1174277 | HR-TB | lineage2.2.1 | None | SRR1013577 | HR-TB | lineage2.2.2 | None | SRR1013622 | Pre-XDR-TB | lineage2.2.2 | None | SRR7444072 | Sensitive | lineage4.9 | None | ERR751414 | MDR-TB | lineage4 | None | SRR1180982 | Other | lineage2.2.1 | None | SRR7086716 | HR-TB | La1.2.BCG | None | ERR3806453 | Other | lineage4.3.4.2 | None | SRR6982400 | Other | lineage2.2.1 | None | SRR10869241 | Pre-XDR-TB | lineage2.2.1 | None | ERR176741 | Other | lineage4.9 | None | SRR1196582 | Other | lineage4.9 | None | SAMN02360581 | HR-TB | lineage2.2.1 | None | SRR21675949 | Other | lineage4.3.3 | None | SAMN02360586 | HR-TB | lineage2.2.1 | None | SAMN02567670 | Sensitive | lineage4.6.1.1 | None | SRR5341425 | Other | lineage4.9 | None | ERR970458 | RR-TB | lineage4.1.1.3 | None | SAMN02567685 | Pre-XDR-TB | lineage2.2.1 | None | ERR176470 | Other | lineage4.3.4.1 | mw | SAMN02360571 | HR-TB | lineage2.2.1;lineage2.2.2 | None | SRR1173768 | Sensitive | lineage4.9 | None | SRR7236239 | Other | La1.7.1 | None | SRR6046152 | Other | lineage4.9 | None | SRR1013570 | Pre-XDR-TB | lineage2.2.1 | None | SAMN02360595 | Pre-XDR-TB | lineage2.2.2 | None | SRR1173139 | Sensitive | lineage4.9 | None | SRR1173190 | Sensitive | lineage4.9 | None | ERR751865 | Other | lineage1.1.1 | None | ERR126611 | Sensitive | lineage4.9.1 | None | ERR987704 | HR-TB | lineage4.6.1.2 | None | ERR2229332 | Other | lineage4.8 | None | ERR7801178 | Other | lineage4.3.4.2.1 | None | SRR1173343 | Pre-XDR-TB | lineage2.2.1 | None | SRR7086711 | HR-TB | La1.2.BCG | None | SRR1049041 | HR-TB | lineage2.2.1;lineage4 | None | SRR7443726 | Sensitive | lineage4.9 | None | SRR1013603 | HR-TB | lineage2.2.1 | None | ERR036215 | Other | lineage4.8 | None | SRR1013578 | HR-TB | lineage2.2.2;lineage4 | None | SRR1048975 | HR-TB | lineage2.2.1 | None | ERR037234 | Sensitive | lineage4.9 | None | SRR21711124 | Other | lineage1.1.3 | None | ERR2446433 | Other | lineage4.1.2.1 | None | SRR1013610 | Sensitive | lineage4 | None | SRR1013618 | RR-TB | lineage2.2.1;lineage4 | None | ERR502942 | Sensitive | lineage4.9 | None | SRR1047993 | HR-TB | lineage2.2.1 | None | SRR1183080 | Other | lineage4.9 | None | SRR1013600 | Sensitive | lineage2.2.1.1 | None | SRR5341417 | HR-TB | lineage3 | None | SRR6045162 | Sensitive | lineage4.9 | None | ERR752012 | HR-TB | lineage1.1.1.1 | None | SRR1013566 | Pre-XDR-TB | lineage4.4.2 | None | ERR736850 | Sensitive | lineage4.9 | None | SRR1184383 | Other | lineage4.9 | None | SRR1048968 | HR-TB | lineage2.2.1;lineage2.2.2 | None |
|---|
