Run ID: ERR036225
Sample name:
Date: 31-03-2023 08:30:55
Number of reads: 5129574
Percentage reads mapped: 88.6
Strain: lineage4.3.4.2.1
Drug-resistance: Other
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.3 | Euro-American (LAM) | mainly-LAM | None | 1.0 |
lineage4.3.4 | Euro-American (LAM) | LAM | RD174 | 1.0 |
lineage4.3.4.2 | Euro-American (LAM) | LAM1;LAM4;LAM11 | RD174 | 1.0 |
lineage4.3.4.2.1 | Euro-American (LAM) | LAM11 | RD174 | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|---|---|---|---|---|
rrs | 1472733 | n.888G>A | non_coding_transcript_exon_variant | 0.54 | streptomycin |
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrB | 5347 | c.108G>C | synonymous_variant | 0.23 |
gyrB | 6140 | p.Val301Leu | missense_variant | 1.0 |
gyrA | 6445 | c.-857C>T | upstream_gene_variant | 0.99 |
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7493 | c.192C>T | synonymous_variant | 0.3 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 0.99 |
rpoB | 759831 | p.Thr9Pro | missense_variant | 0.31 |
rpoB | 762249 | p.Leu815Val | missense_variant | 0.19 |
rpoC | 762836 | c.-534C>G | upstream_gene_variant | 0.37 |
rpoC | 764995 | c.1626C>G | synonymous_variant | 1.0 |
rpoC | 767305 | p.Tyr1312* | stop_gained | 0.16 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
atpE | 1461019 | c.-26C>A | upstream_gene_variant | 0.28 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrs | 1472122 | n.277G>A | non_coding_transcript_exon_variant | 0.11 |
rrs | 1472127 | n.282C>T | non_coding_transcript_exon_variant | 0.13 |
rrs | 1472129 | n.284G>C | non_coding_transcript_exon_variant | 0.14 |
rrs | 1472137 | n.292G>A | non_coding_transcript_exon_variant | 0.32 |
rrs | 1472150 | n.305T>A | non_coding_transcript_exon_variant | 0.35 |
rrs | 1472151 | n.306C>T | non_coding_transcript_exon_variant | 0.35 |
rrs | 1472164 | n.319G>A | non_coding_transcript_exon_variant | 0.45 |
rrs | 1472172 | n.327T>C | non_coding_transcript_exon_variant | 0.44 |
rrs | 1472177 | n.332C>T | non_coding_transcript_exon_variant | 0.46 |
rrs | 1472203 | n.358G>A | non_coding_transcript_exon_variant | 0.42 |
rrs | 1472210 | n.365A>C | non_coding_transcript_exon_variant | 0.35 |
rrs | 1472213 | n.368G>C | non_coding_transcript_exon_variant | 0.34 |
rrs | 1472215 | n.370A>G | non_coding_transcript_exon_variant | 0.34 |
rrs | 1472225 | n.380C>A | non_coding_transcript_exon_variant | 0.3 |
rrs | 1472234 | n.389T>C | non_coding_transcript_exon_variant | 0.2 |
rrs | 1472236 | n.391C>G | non_coding_transcript_exon_variant | 0.2 |
rrs | 1472240 | n.395G>A | non_coding_transcript_exon_variant | 0.18 |
rrs | 1472344 | n.499C>T | non_coding_transcript_exon_variant | 0.2 |
rrs | 1472378 | n.533G>T | non_coding_transcript_exon_variant | 0.35 |
rrs | 1472379 | n.534T>G | non_coding_transcript_exon_variant | 0.36 |
rrs | 1472382 | n.537G>A | non_coding_transcript_exon_variant | 0.35 |
rrs | 1472389 | n.544G>A | non_coding_transcript_exon_variant | 0.36 |
rrs | 1472400 | n.555C>T | non_coding_transcript_exon_variant | 0.36 |
rrs | 1472412 | n.567A>C | non_coding_transcript_exon_variant | 0.29 |
rrs | 1472415 | n.570T>G | non_coding_transcript_exon_variant | 0.25 |
rrs | 1472422 | n.577T>C | non_coding_transcript_exon_variant | 0.19 |
rrs | 1472557 | n.712G>A | non_coding_transcript_exon_variant | 0.17 |
rrs | 1472570 | n.725G>A | non_coding_transcript_exon_variant | 0.18 |
rrs | 1472571 | n.726G>C | non_coding_transcript_exon_variant | 0.16 |
rrs | 1472573 | n.728C>T | non_coding_transcript_exon_variant | 0.18 |
rrs | 1472579 | n.734G>T | non_coding_transcript_exon_variant | 0.22 |
rrs | 1472581 | n.736A>T | non_coding_transcript_exon_variant | 0.24 |
rrs | 1472596 | n.751G>T | non_coding_transcript_exon_variant | 0.27 |
rrs | 1472598 | n.753A>T | non_coding_transcript_exon_variant | 0.27 |
rrs | 1472614 | n.769G>T | non_coding_transcript_exon_variant | 0.25 |
rrs | 1472616 | n.771G>A | non_coding_transcript_exon_variant | 0.25 |
rrs | 1472655 | n.810G>A | non_coding_transcript_exon_variant | 0.1 |
rrs | 1472697 | n.852T>C | non_coding_transcript_exon_variant | 0.12 |
rrs | 1472713 | n.868T>C | non_coding_transcript_exon_variant | 0.34 |
rrs | 1472716 | n.871C>T | non_coding_transcript_exon_variant | 0.4 |
rrs | 1472742 | n.897C>T | non_coding_transcript_exon_variant | 0.57 |
rrs | 1472744 | n.899A>G | non_coding_transcript_exon_variant | 0.58 |
rrs | 1472767 | n.922G>A | non_coding_transcript_exon_variant | 0.59 |
rrs | 1472781 | n.936C>T | non_coding_transcript_exon_variant | 0.54 |
rrs | 1472793 | n.948A>T | non_coding_transcript_exon_variant | 0.46 |
rrs | 1472803 | n.958T>A | non_coding_transcript_exon_variant | 0.36 |
rrs | 1472895 | n.1050C>T | non_coding_transcript_exon_variant | 0.17 |
rrs | 1473177 | n.1332G>A | non_coding_transcript_exon_variant | 0.12 |
rrs | 1473191 | n.1346C>T | non_coding_transcript_exon_variant | 0.15 |
rrs | 1473206 | n.1361G>A | non_coding_transcript_exon_variant | 0.19 |
rrs | 1473226 | n.1381C>T | non_coding_transcript_exon_variant | 0.19 |
rrs | 1473248 | n.1403G>A | non_coding_transcript_exon_variant | 0.12 |
rrs | 1473343 | n.1498G>T | non_coding_transcript_exon_variant | 0.28 |
rrs | 1473352 | n.1507C>T | non_coding_transcript_exon_variant | 0.18 |
rrl | 1474380 | n.723G>T | non_coding_transcript_exon_variant | 0.2 |
rrl | 1474864 | n.1207C>T | non_coding_transcript_exon_variant | 0.12 |
rrl | 1474866 | n.1209C>A | non_coding_transcript_exon_variant | 0.12 |
rrl | 1474869 | n.1212G>T | non_coding_transcript_exon_variant | 0.12 |
rrl | 1474892 | n.1235G>A | non_coding_transcript_exon_variant | 0.12 |
rrl | 1474896 | n.1239A>G | non_coding_transcript_exon_variant | 0.13 |
rrl | 1474902 | n.1245T>C | non_coding_transcript_exon_variant | 0.14 |
rrl | 1474903 | n.1246T>A | non_coding_transcript_exon_variant | 0.13 |
rrl | 1474904 | n.1247G>C | non_coding_transcript_exon_variant | 0.13 |
rrl | 1474913 | n.1256T>A | non_coding_transcript_exon_variant | 0.13 |
rrl | 1475363 | n.1706C>A | non_coding_transcript_exon_variant | 0.3 |
rrl | 1475803 | n.2146T>C | non_coding_transcript_exon_variant | 0.29 |
rrl | 1475804 | n.2147G>C | non_coding_transcript_exon_variant | 0.3 |
rrl | 1475816 | n.2159C>G | non_coding_transcript_exon_variant | 0.36 |
rrl | 1475817 | n.2160A>G | non_coding_transcript_exon_variant | 0.35 |
rrl | 1475858 | n.2201T>C | non_coding_transcript_exon_variant | 0.27 |
rrl | 1475866 | n.2209T>A | non_coding_transcript_exon_variant | 0.23 |
rrl | 1476225 | n.2568T>G | non_coding_transcript_exon_variant | 0.31 |
rrl | 1476229 | n.2572C>T | non_coding_transcript_exon_variant | 0.3 |
rrl | 1476251 | n.2594T>C | non_coding_transcript_exon_variant | 0.29 |
rrl | 1476260 | n.2603A>G | non_coding_transcript_exon_variant | 0.31 |
rrl | 1476268 | n.2611A>T | non_coding_transcript_exon_variant | 0.28 |
rrl | 1476275 | n.2618T>A | non_coding_transcript_exon_variant | 0.27 |
rrl | 1476279 | n.2622G>A | non_coding_transcript_exon_variant | 0.27 |
rrl | 1476280 | n.2623A>C | non_coding_transcript_exon_variant | 0.26 |
rrl | 1476332 | n.2675G>C | non_coding_transcript_exon_variant | 0.39 |
rrl | 1476353 | n.2696G>T | non_coding_transcript_exon_variant | 0.56 |
rrl | 1476358 | n.2701T>C | non_coding_transcript_exon_variant | 0.57 |
rrl | 1476369 | n.2712C>T | non_coding_transcript_exon_variant | 0.61 |
rrl | 1476372 | n.2715T>C | non_coding_transcript_exon_variant | 0.63 |
rrl | 1476382 | n.2725A>G | non_coding_transcript_exon_variant | 0.63 |
rrl | 1476383 | n.2726T>A | non_coding_transcript_exon_variant | 0.64 |
rrl | 1476408 | n.2751G>A | non_coding_transcript_exon_variant | 0.78 |
rrl | 1476425 | n.2768G>T | non_coding_transcript_exon_variant | 0.72 |
rrl | 1476428 | n.2771C>T | non_coding_transcript_exon_variant | 0.72 |
rrl | 1476429 | n.2772A>C | non_coding_transcript_exon_variant | 0.72 |
rrl | 1476466 | n.2809C>T | non_coding_transcript_exon_variant | 0.59 |
rrl | 1476481 | n.2824T>C | non_coding_transcript_exon_variant | 0.46 |
rrl | 1476506 | n.2849T>C | non_coding_transcript_exon_variant | 0.22 |
inhA | 1674892 | p.Asn231Asp | missense_variant | 0.41 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
PPE35 | 2169866 | c.747G>C | synonymous_variant | 0.28 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
eis | 2714366 | p.Val323Leu | missense_variant | 0.18 |
eis | 2715586 | c.-254G>C | upstream_gene_variant | 0.6 |
pepQ | 2859381 | c.1038C>G | synonymous_variant | 0.27 |
ribD | 2987307 | p.Ala157Pro | missense_variant | 0.18 |
thyA | 3073806 | c.666C>G | synonymous_variant | 0.18 |
thyA | 3073868 | p.Thr202Ala | missense_variant | 1.0 |
ald | 3086788 | c.-32T>C | upstream_gene_variant | 1.0 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 1.0 |
fprA | 3475280 | p.Val425Gly | missense_variant | 0.41 |
Rv3236c | 3612009 | p.Ala370Thr | missense_variant | 1.0 |
alr | 3840719 | c.702A>G | synonymous_variant | 1.0 |
rpoA | 3878238 | p.Asp90Glu | missense_variant | 0.15 |
clpC1 | 4038287 | c.2418C>T | synonymous_variant | 1.0 |
clpC1 | 4039932 | p.Gly258Val | missense_variant | 0.27 |
embC | 4242425 | p.Arg855Gly | missense_variant | 0.18 |
embC | 4242476 | p.Pro872Ala | missense_variant | 0.26 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embC | 4242822 | p.Val987Gly | missense_variant | 0.61 |
embC | 4242827 | p.Leu989Val | missense_variant | 0.34 |
embB | 4247126 | p.Thr205Ala | missense_variant | 1.0 |
ubiA | 4269529 | p.Ala102Gly | missense_variant | 0.33 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |
gid | 4408156 | p.Leu16Arg | missense_variant | 1.0 |