EBG00000313325 - n.544G>A


Drug resistance types
50 Sensitive 34 RR-TB 19 HR-TB 37 MDR-TB 19 Pre-XDR-TB 0 XDR-TB 128 Other
lineage Counts
lineage Count
lineage4.4.1.1 6
lineage4.8 13
lineage4;lineage2.2.1 1
lineage5.1.1 3
13
lineage3 11
lineage2.2.1 29
lineage4.9 63
La1.8.1 7
lineage4.3.1 1
lineage4.3.3 9
lineage4.1.2 5
lineage4.1.2.1 15
lineage4.6 2
lineage2.2.1.2 1
lineage2.2.1.1 4
lineage4.1.1.3 6
lineage4.6.1 4
lineage4.6.1.1 3
lineage4.6.1.2 2
lineage4.2.1 1
lineage4.3.4.2.1;lineage1.1.3 1
lineage4.9;lineage4.3.4.2.1;lineage4.3.4.1;lineage3;lineage2.2.1 1
lineage4.9;lineage4.3.4.2.1;lineage1.1.3.2 1
lineage4.3.4.2.1 4
lineage4 14
lineage4.3.4.1 1
lineage4.4.1.2 2
lineage4.3.4 1
lineage4.1.4 1
lineage6.2.3;lineage1.1.2 1
lineage4.9;La1.8.1 2
lineage4;lineage3.1 1
lineage4.2.2.1 1
lineage1.1.2 3
La1.8.2 3
La1.2 4
lineage4.3.4.2 2
lineage1.2.2.2 3
lineage4.6.4 1
lineage4.9.1 2
lineage4.7 3
lineage4.9;lineage2.2 1
lineage2.2 6
lineage4.8;lineage4.3.3 4
lineage4.3.2.1 3
lineage4.9;lineage2.2.1 1
lineage4.9;lineage4.2.1 1
lineage1.1.3.1 2
lineage1 1
lineage2.2.2 1
lineage3.1.1 2
lineage4.9;lineage4.3.4.1 1
La1.7.1 2
lineage4.2.2.2 2
lineage6.3.1 1
lineage3.1.2.1 1
lineage4.6.2.2 1
lineage1.1.3.2 1
lineage3.1.2 1
lineage4;lineage3 1
lineage4.6.5 1
lineage1.2.1.2.1 1
lineage4.2.1.1 1
spoligotype Counts
spoligotype Count
None 287
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
ID Drug resistance Lineage Country iso2
SRR6896383 RR-TB lineage4.4.1.1 None
SRR7131035 Sensitive lineage4.8 None
SRR6982448 Sensitive lineage4;lineage2.2.1 None
ERR502517 MDR-TB lineage5.1.1 None
SRR6896534 Sensitive None
SRR6896539 MDR-TB lineage3 None
SRR6982275 Other lineage2.2.1 None
ERR502942 Sensitive lineage4.9 None
ERR5311077 RR-TB La1.8.1 None
SRR7131018 Sensitive lineage4.3.1 None
SRR7131053 Other lineage2.2.1 None
SRR7131047 MDR-TB lineage4.3.3 None
SRR7131122 Other lineage2.2.1 None
SRR7131114 Other lineage4.1.2 None
SRR8073606 Other La1.8.1 None
SRR7131121 Other lineage4.3.3 None
SRR7131169 Other lineage4.1.2.1 None
SRR7131156 Other lineage4.6 None
SRR7131129 Sensitive lineage4.1.2.1 None
SRR7131240 Sensitive lineage4.8 None
SRR7131185 Other lineage4.1.2.1 None
SRR7453031 Sensitive lineage2.2.1.2 None
SRR7131287 Other lineage2.2.1.1 None
SRR7131296 Other lineage4.3.3 None
SRR7535053 Sensitive lineage3 None
SRR9971333 MDR-TB lineage4.1.1.3 None
SRR7535074 Sensitive lineage3 None
SRR7535054 Sensitive lineage4.6.1 None
SRR7535079 Sensitive lineage4.6.1.1 None
SRR7535077 MDR-TB lineage4.6.1.2 None
SRR9971122 MDR-TB lineage4.8 None
SRR7645834 Other lineage2.2.1 None
SRR7645936 Sensitive lineage2.2.1 None
SRR7535080 HR-TB lineage4.8 None
ERR323057 Sensitive lineage4.9 None
SRR7755706 MDR-TB lineage4.2.1 None
SRR7765062 Pre-XDR-TB lineage4.1.2.1 None
ERR036224 HR-TB lineage4.3.4.2.1;lineage1.1.3 None
DRR184982 RR-TB lineage2.2.1 None
ERR036194 Other lineage4.6.1.2 None
ERR036207 Other lineage4.9 None
ERR036215 Other lineage4.8 None
ERR036185 MDR-TB lineage4.9;lineage4.3.4.2.1;lineage4.3.4.1;lineage3;lineage2.2.1 None
ERR036211 Other lineage4.9;lineage4.3.4.2.1;lineage1.1.3.2 None
ERR037529 Other lineage4.3.4.2.1 None
ERR038289 Other lineage4.3.3 None
ERR10796568 Other lineage4.9 None
ERR1023527 RR-TB lineage4 None
ERR10796572 Other lineage4.3.4.1 None
ERR10796625 RR-TB lineage4.4.1.1 None
ERR10796599 Other lineage4 None
ERR10796626 Other lineage4.1.2 None
ERR126597 MDR-TB lineage4.4.1.2 None
ERR10796630 HR-TB None
ERR10796627 Other lineage4 None
ERR10796631 Other lineage4.3.4 None
ERR3324373 MDR-TB lineage2.2.1 None
ERR3324351 MDR-TB lineage4.1.4 None
ERR3324368 RR-TB lineage6.2.3;lineage1.1.2 None
ERR3283006 RR-TB lineage4.9 None
ERR3283034 Sensitive lineage4.9 None
ERR3324347 Sensitive lineage4.1.2.1 None
ERR3797062 RR-TB lineage4.9 None
ERR3439301 Other lineage4.9;La1.8.1 None
ERR3468488 RR-TB La1.8.1 None
ERR405190 Sensitive lineage4.9 None
ERR405217 Sensitive lineage2.2.1 None
ERR405191 Other lineage4.9 None
ERR405222 Sensitive lineage4;lineage3.1 None
ERR405209 Sensitive lineage4 None
ERR4407557 Pre-XDR-TB lineage4.2.2.1 None
ERR4188072 Other lineage4.9;La1.8.1 None
ERR473340 Sensitive lineage1.1.2 None
ERR473311 Sensitive lineage4.9 None
ERR4769424 Sensitive lineage4.9 None
ERR5979787 Other lineage4.9 None
ERR4769429 Other lineage4.9 None
ERR5979784 Sensitive lineage4.9 None
ERR6149874 Other La1.8.2 None
ERR6149870 Other La1.8.2 None
ERR6140667 Other La1.8.2 None
ERR6197024 RR-TB lineage4.9 None
ERR6201798 Other La1.2 None
ERR6197043 MDR-TB lineage4.3.4.2 None
ERR6197040 Other lineage4.9 None
ERR6198389 Other La1.2 None
ERR6201843 Other La1.2 None
ERR6201802 Other La1.2 None
ERR1873557 Pre-XDR-TB lineage2.2.1 None
ERR736825 Sensitive lineage4.9 None
ERR2124091 Pre-XDR-TB lineage4.3.4.2 None
ERR2124092 HR-TB lineage1.2.2.2 None
ERR2124088 Other lineage4.4.1.1 None
ERR6359073 Sensitive lineage4.9 None
ERR702437 HR-TB lineage4.6.4 None
ERR736850 Sensitive lineage4.9 None
ERR751330 MDR-TB lineage5.1.1 None
ERR751338 Other lineage5.1.1 None
ERR2124090 MDR-TB lineage2.2.1 None
ERR846990 Sensitive lineage4.9 None
ERR7801178 Other lineage4.3.4.2.1 None
ERR1873445 MDR-TB lineage2.2.1 None
ERR773804 Sensitive lineage4.9 None
ERR7801177 Other lineage4.3.4.2.1 None
ERR036225 Other lineage4.3.4.2.1 None
ERR972801 RR-TB lineage2.2.1.1 None
ERR970449 RR-TB lineage4.1.1.3 None
ERR970455 RR-TB lineage4.1.2 None
ERR037504 Other lineage4.9.1 None
ERR970453 RR-TB lineage4.1.2 None
ERR970457 RR-TB lineage4.1.1.3 None
ERR9786164 RR-TB lineage4.1.1.3 None
ERR987733 RR-TB lineage4.6.1.1 None
ERR987707 MDR-TB lineage4.7 None
SRR1019127 Other lineage4.9;lineage2.2 None
SRR1013528 Pre-XDR-TB lineage2.2 None
SRR1013530 HR-TB lineage4.9 None
SRR1049030 Pre-XDR-TB lineage4.9 None
SRR1049031 HR-TB lineage4.9 None
SRR1049676 MDR-TB lineage4.8;lineage4.3.3 None
SRR11349147 RR-TB lineage4.3.2.1 None
SRR1049677 MDR-TB lineage4.8;lineage4.3.3 None
SRR1062868 HR-TB lineage4.9 None
SRR1106670 Other lineage4.9 None
SRR1062864 Sensitive lineage4.9;lineage2.2.1 None
SRR1062869 Pre-XDR-TB lineage4.9 None
SRR1062920 MDR-TB lineage4.8;lineage4.3.3 None
SRR11349188 MDR-TB lineage4.1.2.1 None
SRR1140574 MDR-TB lineage4.8;lineage4.3.3 None
SRR1140927 Sensitive lineage4.3.2.1 None
SRR1159158 Other lineage2.2.1 None
SRR1140942 Other None
SRR1141261 MDR-TB lineage4.9 None
SRR1173139 Sensitive lineage4.9 None
SRR1162501 Other lineage2.2.1 None
SRR1166181 MDR-TB lineage4 None
SRR1168955 MDR-TB lineage4.9;lineage4.2.1 None
SRR1173310 MDR-TB None
SRR1173185 HR-TB lineage4.9 None
SRR1173190 Sensitive lineage4.9 None
SRR1173269 Sensitive lineage4.9 None
SRR1180982 Other lineage2.2.1 None
SRR1173705 Other lineage4.9 None
SRR1173768 Sensitive lineage4.9 None
SRR1175473 Other lineage4.9 None
SRR1175472 MDR-TB lineage4 None
SRR1180252 Other lineage4.9 None
SRR1173343 Pre-XDR-TB lineage2.2.1 None
SRR1173450 RR-TB lineage4.9 None
SRR1173508 Sensitive lineage4.9 None
SRR1173719 HR-TB lineage3 None
SRR1175474 HR-TB lineage4.9 None
SRR1175491 MDR-TB lineage4 None
SRR1181161 Other lineage4.9 None
SRR11972169 HR-TB lineage2.2 None
SRR1183080 RR-TB lineage4.9 None
SRR1184329 MDR-TB lineage4.9 None
SRR11972157 MDR-TB lineage2.2.1 None
SRR1181250 Other lineage4.9 None
SRR1184383 Other lineage4.9 None
SRR1196478 MDR-TB lineage4.9 None
SRR11972159 MDR-TB lineage2.2.1 None
SRR11972166 Sensitive lineage1.1.3.1 None
SRR11972163 Sensitive lineage1 None
SRR11972170 HR-TB lineage3 None
SRR11972164 MDR-TB lineage2.2.1.1 None
SRR11972425 Pre-XDR-TB lineage2.2.1 None
SRR11972171 RR-TB lineage2.2.2 None
SRR13861457 Other lineage4.9 None
SRR12634609 MDR-TB lineage3.1.1 None
SRR13591377 Sensitive lineage4.1.1.3 None
SRR13861312 Other lineage4.9 None
SRR13861438 Other lineage4.9 None
SRR13591410 Other lineage4.9;lineage4.3.4.1 None
SRR13861244 Other lineage4.9 None
SRR13861506 RR-TB lineage4.9 None
SRR17658580 Sensitive lineage4.4.1.2 None
SRR14334195 Pre-XDR-TB lineage2.2.1 None
SRR15315871 Sensitive lineage4.9 None
SRR15368973 Other None
SRR16156832 RR-TB None
SRR14334194 Pre-XDR-TB lineage2.2.1 None
SRR16156697 MDR-TB lineage2.2.1 None
SRR1792011 Other La1.8.1 None
SRR1791940 Other La1.8.1 None
SRR18213726 Other lineage3 None
SRR1792022 Other La1.8.1 None
SRR2100067 Other lineage4.3.3 None
SRR2101684 Other lineage2.2.1.1 None
SRR2101471 RR-TB lineage4.4.1.1 None
SRR2101505 MDR-TB lineage4.9.1 None
SRR22424905 RR-TB lineage4.9 None
SRR21469201 Other La1.7.1 None
SRR22048375 Other lineage4.1.2.1 None
SRR22424884 Pre-XDR-TB lineage2.2.1 None
SRR21469200 Other La1.7.1 None
SRR21685367 MDR-TB lineage2.2.1 None
SRR21728339 Other lineage3 None
ERR2229033 Other lineage4.8 None
ERR4815278 Other lineage4.8 None
SAMN02419540 Other lineage2.2.1 None
SRR3601585 Pre-XDR-TB lineage2.2 None
SRR3619841 Pre-XDR-TB lineage2.2.1 None
SRR3618864 Pre-XDR-TB lineage2.2.1 None
ERR1750889 Other lineage4.4.1.1 None
ERR4815040 Other lineage4.2.2.2 None
ERR4815079 RR-TB lineage3 None
ERR4816928 HR-TB lineage1.2.2.2 None
ERR4815944 HR-TB lineage4.1.2.1 None
SRR3105762 HR-TB None
SRR3619764 Pre-XDR-TB lineage2.2 None
ERR4815517 Other lineage1.2.2.2 None
ERR2027233 RR-TB lineage4.1.2.1 None
ERR4816429 Other lineage1.1.2 None
ERR1199039 Sensitive lineage4.6.1 None
ERR4817131 Pre-XDR-TB None
ERR1034791 RR-TB None
SRR3742667 Sensitive lineage4.9 None
ERR2229780 Other lineage4.9 None
ERR2229358 Other lineage4.8 None
ERR2229336 Other lineage4.8 None
ERR4816755 Other lineage4.1.1.3 None
ERR2228822 Other lineage4.9 None
ERR2510736 Other lineage4.1.2.1 None
ERR2228859 RR-TB lineage4 None
ERR2228874 Other lineage4 None
ERR4818726 Other lineage4.1.2.1 None
SRR4033523 Other lineage2.2 None
ERR2228888 Other lineage4.8 None
ERR2510813 Sensitive lineage4.8 None
ERR2510820 Other lineage4.8 None
ERR2510746 Other lineage2.2.1 None
ERR2510807 Other lineage4.6 None
ERR2510831 Other lineage4.3.3 None
ERR4819096 Other lineage4.4.1.1 None
ERR245790 Sensitive None
ERR4818440 Other lineage6.3.1 None
ERR1199065 Sensitive lineage4.6.1 None
ERR4819073 Other lineage4.1.2.1 None
ERR2446433 Other lineage4.1.2.1 None
SRR5341417 Pre-XDR-TB lineage3 None
SRR5341365 Pre-XDR-TB lineage3 None
SRR5341375 Other lineage4.9 None
SRR5341429 HR-TB lineage3.1.2.1 None
ERR4819602 Sensitive lineage4.9 None
ERR4819622 Other lineage4.1.2.1 None
ERR4819641 HR-TB lineage4.6.2.2 None
ERR4819867 Other lineage1.1.3.2 None
ERR4819784 Other lineage4.1.2.1 None
SRR5341300 Other lineage4 None
SRR5341467 Other lineage4 None
SRR5341310 Other lineage1.1.2 None
SRR5431794 Other La1.8.1 None
ERR4822049 Sensitive lineage4.3.3 None
SAMN02350456 Sensitive lineage4.3.2.1 None
ERR4821879 Other lineage4.6.1.1 None
ERR4821417 Other lineage1.1.3.1 None
SRR6046152 Other lineage4.9 None
ERR4821550 Other lineage2.2.1 None
SRR6045683 Other lineage3.1.2 None
SRR6045909 Other lineage4.8 None
SRR5818586 RR-TB lineage4.2.2.2 None
SRR6044830 Other lineage4.9 None
SRR6045045 Other lineage2.2.1 None
SRR6044936 Other lineage4 None
SRR6045036 Other lineage4;lineage3 None
ERR4829196 Other lineage4.1.2 None
SRR6045267 RR-TB lineage4 None
ERR2851371 Other lineage4.9 None
SRR6046015 Other lineage4.9 None
SRR6045162 Sensitive lineage4.9 None
SRR6045379 Other None
SRR6046766 Other lineage3.1.1 None
SRR6046815 Other lineage3 None
SRR6046848 Other lineage4.6.5 None
SRR6153036 Other None
SRR6152979 Other lineage4.7 None
SRR6397396 HR-TB lineage1.2.1.2.1 None
SRR6397441 Other lineage4 None
SRR6397642 RR-TB None
ERR3078008 MDR-TB lineage4.6.1 None
SRR6397770 Other lineage4.7 None
SRR6397727 Other lineage4.2.1.1 None
ERR502470 RR-TB lineage4.9 None
SRR6982140 Other lineage2.2 None
SRR6982141 RR-TB lineage4.3.3 None
SRR6785282 Other lineage4.3.3 None