TB-Profiler result

Run: ERR2229358

Summary

Run ID: ERR2229358

Sample name:

Date: 31-03-2023 17:05:29

Number of reads: 683013

Percentage reads mapped: 14.84

Strain: lineage4.8

Drug-resistance: Other


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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
lineage4 Euro-American LAM;T;S;X;H None 1.0
lineage4.8 Euro-American (mainly T) T1;T2;T3;T5 RD219 1.0
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
rrs 1472733 n.888G>A non_coding_transcript_exon_variant 0.99 streptomycin
thyA 3074223 p.Trp83Cys missense_variant 0.15 para-aminosalicylic_acid
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
gyrA 6469 c.-833T>C upstream_gene_variant 0.11
gyrA 7064 c.-238C>A upstream_gene_variant 0.15
gyrB 7166 p.Ala643Ser missense_variant 0.29
gyrA 7362 p.Glu21Gln missense_variant 1.0
gyrA 8352 p.Gly351Arg missense_variant 0.13
gyrA 8466 p.His389Asn missense_variant 0.33
gyrA 8553 c.1252C>A synonymous_variant 0.17
gyrA 9475 p.Val725Ala missense_variant 0.17
fgd1 491072 p.Tyr97Phe missense_variant 0.18
fgd1 491201 p.Arg140Leu missense_variant 0.25
mshA 575226 c.-122C>A upstream_gene_variant 0.14
mshA 576108 p.Ala254Gly missense_variant 0.25
ccsA 620480 p.Leu197Pro missense_variant 0.11
rpoB 760802 c.996C>A synonymous_variant 0.33
rpoC 763160 c.-210G>A upstream_gene_variant 0.14
rpoB 763234 p.Glu1143Val missense_variant 0.17
rpoC 763289 c.-81C>G upstream_gene_variant 0.17
rpoC 763596 p.Glu76Gly missense_variant 0.2
rpoC 764545 c.1176C>G synonymous_variant 0.13
rpoC 764956 c.1587T>C synonymous_variant 0.12
rpoC 765180 p.Gly604Val missense_variant 0.13
rpoC 765336 p.Trp656* stop_gained 0.15
rpoC 767266 c.3897G>A synonymous_variant 0.15
mmpL5 775639 p.Ile948Val missense_variant 1.0
mmpL5 775834 p.Ala883Thr missense_variant 0.13
mmpL5 775910 c.2571G>T synonymous_variant 0.2
mmpL5 776331 p.Arg717Leu missense_variant 0.14
mmpL5 776547 p.Met645Thr missense_variant 0.15
mmpL5 776562 p.Glu640Ala missense_variant 0.12
mmpL5 777750 p.Arg244His missense_variant 0.14
mmpR5 779398 p.Arg137Trp missense_variant 0.17
rpsL 781395 c.-165T>C upstream_gene_variant 1.0
rpsL 781491 c.-69C>A upstream_gene_variant 0.13
fbiC 1303543 p.Lys205Glu missense_variant 0.13
fbiC 1303665 c.735G>T synonymous_variant 0.14
fbiC 1303747 p.Thr273Ala missense_variant 1.0
fbiC 1304332 p.Ser468Cys missense_variant 0.14
fbiC 1304352 c.1422A>G synonymous_variant 0.13
fbiC 1304730 c.1800C>T synonymous_variant 0.17
Rv1258c 1406222 c.1119C>A synonymous_variant 0.14
Rv1258c 1406561 c.780G>T synonymous_variant 0.17
Rv1258c 1407188 c.153C>A synonymous_variant 0.17
Rv1258c 1407353 c.-13A>C upstream_gene_variant 0.12
embR 1416378 p.Asn324Asp missense_variant 0.14
embR 1417030 c.318C>A synonymous_variant 0.13
rrs 1471659 n.-187C>T upstream_gene_variant 1.0
rrs 1471782 n.-64C>A upstream_gene_variant 0.25
rrs 1471850 n.5G>T non_coding_transcript_exon_variant 0.92
rrs 1471852 n.7T>A non_coding_transcript_exon_variant 0.93
rrs 1471878 n.33C>T non_coding_transcript_exon_variant 0.89
rrs 1471891 n.46C>T non_coding_transcript_exon_variant 0.16
rrs 1471896 n.51T>C non_coding_transcript_exon_variant 0.84
rrs 1471900 n.55C>T non_coding_transcript_exon_variant 0.84
rrs 1471914 n.69A>G non_coding_transcript_exon_variant 0.29
rrs 1471924 n.79C>A non_coding_transcript_exon_variant 0.4
rrs 1472106 n.261G>A non_coding_transcript_exon_variant 0.76
rrs 1472112 n.267C>T non_coding_transcript_exon_variant 0.81
rrs 1472122 n.277G>A non_coding_transcript_exon_variant 0.8
rrs 1472127 n.282C>T non_coding_transcript_exon_variant 0.82
rrs 1472128 n.283G>A non_coding_transcript_exon_variant 0.82
rrs 1472129 n.284G>C non_coding_transcript_exon_variant 0.82
rrs 1472137 n.292G>A non_coding_transcript_exon_variant 0.89
rrs 1472150 n.305T>A non_coding_transcript_exon_variant 0.94
rrs 1472151 n.306C>T non_coding_transcript_exon_variant 0.94
rrs 1472153 n.308G>A non_coding_transcript_exon_variant 0.17
rrs 1472164 n.319G>A non_coding_transcript_exon_variant 0.96
rrs 1472172 n.327T>C non_coding_transcript_exon_variant 0.97
rrs 1472177 n.332C>T non_coding_transcript_exon_variant 0.97
rrs 1472203 n.358G>A non_coding_transcript_exon_variant 0.97
rrs 1472210 n.365A>C non_coding_transcript_exon_variant 0.99
rrs 1472213 n.368G>C non_coding_transcript_exon_variant 0.99
rrs 1472215 n.370A>G non_coding_transcript_exon_variant 0.99
rrs 1472225 n.380C>A non_coding_transcript_exon_variant 0.99
rrs 1472234 n.389T>C non_coding_transcript_exon_variant 0.99
rrs 1472236 n.391C>G non_coding_transcript_exon_variant 0.98
rrs 1472240 n.395G>A non_coding_transcript_exon_variant 0.99
rrs 1472251 n.406G>A non_coding_transcript_exon_variant 1.0
rrs 1472253 n.408G>T non_coding_transcript_exon_variant 1.0
rrs 1472259 n.414C>A non_coding_transcript_exon_variant 1.0
rrs 1472262 n.417C>T non_coding_transcript_exon_variant 0.83
rrs 1472269 n.424G>A non_coding_transcript_exon_variant 0.73
rrs 1472271 n.426T>C non_coding_transcript_exon_variant 0.73
rrs 1472338 n.493A>C non_coding_transcript_exon_variant 0.25
rrs 1472339 n.494C>A non_coding_transcript_exon_variant 0.25
rrs 1472344 n.499C>T non_coding_transcript_exon_variant 0.81
rrs 1472378 n.533G>T non_coding_transcript_exon_variant 0.89
rrs 1472379 n.534T>G non_coding_transcript_exon_variant 0.91
rrs 1472382 n.537G>A non_coding_transcript_exon_variant 0.94
rrs 1472389 n.544G>A non_coding_transcript_exon_variant 0.94
rrs 1472400 n.555C>T non_coding_transcript_exon_variant 0.91
rrs 1472412 n.567A>C non_coding_transcript_exon_variant 0.85
rrs 1472415 n.570T>G non_coding_transcript_exon_variant 0.83
rrs 1472422 n.577T>C non_coding_transcript_exon_variant 0.71
rrs 1472428 n.583G>T non_coding_transcript_exon_variant 0.75
rrs 1472505 n.660G>A non_coding_transcript_exon_variant 0.43
rrs 1472507 n.662C>G non_coding_transcript_exon_variant 0.76
rrs 1472517 n.672T>A non_coding_transcript_exon_variant 0.86
rrs 1472518 n.673G>T non_coding_transcript_exon_variant 0.87
rrs 1472530 n.685G>A non_coding_transcript_exon_variant 0.95
rrs 1472541 n.696T>G non_coding_transcript_exon_variant 0.79
rrs 1472557 n.712G>A non_coding_transcript_exon_variant 0.98
rrs 1472570 n.725G>A non_coding_transcript_exon_variant 0.95
rrs 1472571 n.726G>C non_coding_transcript_exon_variant 0.95
rrs 1472573 n.728C>T non_coding_transcript_exon_variant 0.95
rrs 1472579 n.734G>T non_coding_transcript_exon_variant 0.95
rrs 1472581 n.736A>T non_coding_transcript_exon_variant 0.95
rrs 1472596 n.751G>T non_coding_transcript_exon_variant 0.96
rrs 1472598 n.753A>T non_coding_transcript_exon_variant 0.96
rrs 1472614 n.769G>T non_coding_transcript_exon_variant 0.96
rrs 1472616 n.771G>A non_coding_transcript_exon_variant 0.96
rrs 1472655 n.810G>A non_coding_transcript_exon_variant 0.95
rrs 1472658 n.813G>A non_coding_transcript_exon_variant 0.9
rrs 1472661 n.816A>G non_coding_transcript_exon_variant 0.89
rrs 1472665 n.820G>A non_coding_transcript_exon_variant 0.89
rrs 1472669 n.824_825insTAGG non_coding_transcript_exon_variant 0.86
rrs 1472695 n.850C>T non_coding_transcript_exon_variant 0.85
rrs 1472697 n.852T>C non_coding_transcript_exon_variant 0.85
rrs 1472713 n.868T>C non_coding_transcript_exon_variant 0.95
rrs 1472716 n.871C>T non_coding_transcript_exon_variant 0.97
rrs 1472742 n.897C>T non_coding_transcript_exon_variant 0.99
rrs 1472744 n.899A>G non_coding_transcript_exon_variant 0.99
rrs 1472767 n.922G>A non_coding_transcript_exon_variant 0.98
rrs 1472781 n.936C>T non_coding_transcript_exon_variant 0.98
rrs 1472793 n.948A>T non_coding_transcript_exon_variant 0.94
rrs 1472803 n.958T>A non_coding_transcript_exon_variant 0.95
rrs 1472824 n.979T>A non_coding_transcript_exon_variant 0.82
rrs 1472880 n.1035_1036insA non_coding_transcript_exon_variant 0.76
rrs 1472895 n.1050C>T non_coding_transcript_exon_variant 0.96
rrs 1472953 n.1108G>A non_coding_transcript_exon_variant 0.27
rrs 1473009 n.1164T>C non_coding_transcript_exon_variant 0.15
rrs 1473035 n.1190G>A non_coding_transcript_exon_variant 0.58
rrs 1473053 n.1208T>A non_coding_transcript_exon_variant 0.5
rrs 1473054 n.1209C>T non_coding_transcript_exon_variant 0.4
rrs 1473055 n.1210C>T non_coding_transcript_exon_variant 0.4
rrs 1473056 n.1211A>T non_coding_transcript_exon_variant 0.4
rrs 1473062 n.1217T>A non_coding_transcript_exon_variant 0.4
rrs 1473068 n.1223A>G non_coding_transcript_exon_variant 0.36
rrs 1473080 n.1235C>A non_coding_transcript_exon_variant 0.29
rrs 1473082 n.1237G>A non_coding_transcript_exon_variant 0.25
rrs 1473083 n.1238G>A non_coding_transcript_exon_variant 0.22
rrs 1473131 n.1286G>T non_coding_transcript_exon_variant 0.42
rrs 1473145 n.1300C>T non_coding_transcript_exon_variant 0.78
rrs 1473147 n.1302G>T non_coding_transcript_exon_variant 0.78
rrs 1473148 n.1303G>A non_coding_transcript_exon_variant 0.81
rrs 1473163 n.1318C>T non_coding_transcript_exon_variant 0.75
rrs 1473164 n.1319C>A non_coding_transcript_exon_variant 0.75
rrs 1473166 n.1321G>A non_coding_transcript_exon_variant 0.75
rrs 1473172 n.1327T>C non_coding_transcript_exon_variant 0.8
rrs 1473173 n.1328C>T non_coding_transcript_exon_variant 0.8
rrs 1473177 n.1332G>A non_coding_transcript_exon_variant 0.85
rrs 1473191 n.1346C>T non_coding_transcript_exon_variant 0.88
rrs 1473206 n.1361G>A non_coding_transcript_exon_variant 0.92
rrs 1473226 n.1381C>T non_coding_transcript_exon_variant 0.96
rrs 1473248 n.1403G>A non_coding_transcript_exon_variant 0.84
rrs 1473249 n.1404T>C non_coding_transcript_exon_variant 0.84
rrs 1473252 n.1407T>C non_coding_transcript_exon_variant 0.84
rrs 1473255 n.1410A>G non_coding_transcript_exon_variant 0.84
rrs 1473259 n.1414C>T non_coding_transcript_exon_variant 0.88
rrs 1473260 n.1415G>T non_coding_transcript_exon_variant 0.9
rrs 1473276 n.1431A>G non_coding_transcript_exon_variant 0.68
rrs 1473327 n.1482A>G non_coding_transcript_exon_variant 0.38
rrs 1473328 n.1483C>T non_coding_transcript_exon_variant 0.38
rrs 1473352 n.1507C>T non_coding_transcript_exon_variant 0.96
rrl 1473388 n.-270G>T upstream_gene_variant 0.5
rrl 1473792 n.135C>T non_coding_transcript_exon_variant 0.71
rrl 1473797 n.140G>T non_coding_transcript_exon_variant 0.67
rrl 1473803 n.146G>A non_coding_transcript_exon_variant 0.6
rrl 1473806 n.149C>T non_coding_transcript_exon_variant 0.67
rrl 1474001 n.344C>T non_coding_transcript_exon_variant 1.0
rrl 1474092 n.435G>A non_coding_transcript_exon_variant 0.4
rrl 1474218 n.561T>A non_coding_transcript_exon_variant 0.58
rrl 1474236 n.579G>A non_coding_transcript_exon_variant 0.33
rrl 1474249 n.592G>A non_coding_transcript_exon_variant 0.15
rrl 1474252 n.595T>A non_coding_transcript_exon_variant 0.15
rrl 1474255 n.598C>T non_coding_transcript_exon_variant 0.15
rrl 1474310 n.653T>G non_coding_transcript_exon_variant 0.13
rrl 1474330 n.673A>T non_coding_transcript_exon_variant 0.33
rrl 1474338 n.681G>A non_coding_transcript_exon_variant 0.4
rrl 1474341 n.684T>G non_coding_transcript_exon_variant 0.4
rrl 1474348 n.691C>T non_coding_transcript_exon_variant 0.4
rrl 1474672 n.1015C>A non_coding_transcript_exon_variant 0.5
rrl 1474749 n.1092C>T non_coding_transcript_exon_variant 0.25
rrl 1474752 n.1096delA non_coding_transcript_exon_variant 0.29
rrl 1474760 n.1103A>G non_coding_transcript_exon_variant 0.22
rrl 1474777 n.1120T>C non_coding_transcript_exon_variant 0.22
rrl 1474779 n.1122G>A non_coding_transcript_exon_variant 0.29
rrl 1474782 n.1125G>A non_coding_transcript_exon_variant 0.29
rrl 1474839 n.1182C>T non_coding_transcript_exon_variant 0.87
rrl 1474844 n.1187G>T non_coding_transcript_exon_variant 0.88
rrl 1474864 n.1207C>T non_coding_transcript_exon_variant 0.94
rrl 1474866 n.1209C>A non_coding_transcript_exon_variant 0.94
rrl 1474869 n.1212G>T non_coding_transcript_exon_variant 0.95
rrl 1474892 n.1235G>A non_coding_transcript_exon_variant 0.91
rrl 1474896 n.1239A>G non_coding_transcript_exon_variant 0.91
rrl 1474902 n.1245T>C non_coding_transcript_exon_variant 0.89
rrl 1474903 n.1246T>A non_coding_transcript_exon_variant 0.88
rrl 1474904 n.1247G>C non_coding_transcript_exon_variant 0.88
rrl 1474913 n.1256T>A non_coding_transcript_exon_variant 0.83
rrl 1474920 n.1263G>C non_coding_transcript_exon_variant 0.79
rrl 1475274 n.1617T>C non_coding_transcript_exon_variant 0.4
rrl 1475552 n.1895G>C non_coding_transcript_exon_variant 0.5
rrl 1475574 n.1917C>A non_coding_transcript_exon_variant 0.77
rrl 1475713 n.2056C>G non_coding_transcript_exon_variant 0.84
rrl 1475716 n.2059A>G non_coding_transcript_exon_variant 0.85
rrl 1475782 n.2125T>C non_coding_transcript_exon_variant 0.5
rrl 1475783 n.2126T>G non_coding_transcript_exon_variant 0.5
rrl 1475803 n.2146T>C non_coding_transcript_exon_variant 1.0
rrl 1475804 n.2147G>C non_coding_transcript_exon_variant 1.0
rrl 1475816 n.2159C>G non_coding_transcript_exon_variant 0.99
rrl 1475817 n.2160A>G non_coding_transcript_exon_variant 0.99
rrl 1475858 n.2201T>C non_coding_transcript_exon_variant 0.94
rrl 1475866 n.2209T>A non_coding_transcript_exon_variant 0.94
rrl 1476141 n.2484A>G non_coding_transcript_exon_variant 0.65
rrl 1476153 n.2496T>C non_coding_transcript_exon_variant 0.68
rrl 1476165 n.2508T>G non_coding_transcript_exon_variant 0.78
rrl 1476179 n.2522C>T non_coding_transcript_exon_variant 0.78
rrl 1476194 n.2537A>G non_coding_transcript_exon_variant 0.76
rrl 1476195 n.2538C>A non_coding_transcript_exon_variant 0.76
rrl 1476196 n.2539C>A non_coding_transcript_exon_variant 0.76
rrl 1476200 n.2543A>T non_coding_transcript_exon_variant 0.87
rrl 1476201 n.2544C>T non_coding_transcript_exon_variant 0.87
rrl 1476204 n.2547C>A non_coding_transcript_exon_variant 0.87
rrl 1476210 n.2553G>T non_coding_transcript_exon_variant 0.87
rrl 1476211 n.2554G>T non_coding_transcript_exon_variant 0.87
rrl 1476212 n.2555T>C non_coding_transcript_exon_variant 0.87
rrl 1476213 n.2556G>A non_coding_transcript_exon_variant 0.87
rrl 1476214 n.2557G>T non_coding_transcript_exon_variant 0.87
rrl 1476215 n.2558C>A non_coding_transcript_exon_variant 0.88
rrl 1476225 n.2568T>G non_coding_transcript_exon_variant 0.97
rrl 1476229 n.2572C>T non_coding_transcript_exon_variant 0.99
rrl 1476260 n.2603A>G non_coding_transcript_exon_variant 0.97
rrl 1476268 n.2611A>T non_coding_transcript_exon_variant 0.97
rrl 1476275 n.2618T>A non_coding_transcript_exon_variant 0.97
rrl 1476279 n.2622G>A non_coding_transcript_exon_variant 0.96
rrl 1476280 n.2623A>C non_coding_transcript_exon_variant 0.96
rrl 1476293 n.2636C>T non_coding_transcript_exon_variant 0.94
rrl 1476294 n.2637A>G non_coding_transcript_exon_variant 0.94
rrl 1476295 n.2638C>G non_coding_transcript_exon_variant 0.93
rrl 1476296 n.2639C>T non_coding_transcript_exon_variant 0.93
rrl 1476297 n.2640C>T non_coding_transcript_exon_variant 0.93
rrl 1476301 n.2644A>C non_coding_transcript_exon_variant 0.93
rrl 1476302 n.2645G>A non_coding_transcript_exon_variant 0.93
rrl 1476311 n.2654G>C non_coding_transcript_exon_variant 0.9
rrl 1476312 n.2655T>C non_coding_transcript_exon_variant 0.89
rrl 1476313 n.2656G>A non_coding_transcript_exon_variant 0.89
rrl 1476332 n.2675G>C non_coding_transcript_exon_variant 0.96
rrl 1476353 n.2696G>T non_coding_transcript_exon_variant 0.97
rrl 1476358 n.2701T>C non_coding_transcript_exon_variant 0.97
rrl 1476369 n.2712C>T non_coding_transcript_exon_variant 0.97
rrl 1476372 n.2715T>C non_coding_transcript_exon_variant 0.97
rrl 1476382 n.2725A>G non_coding_transcript_exon_variant 0.98
rrl 1476383 n.2726T>A non_coding_transcript_exon_variant 0.98
rrl 1476408 n.2751G>A non_coding_transcript_exon_variant 0.98
rrl 1476425 n.2768G>T non_coding_transcript_exon_variant 0.98
rrl 1476428 n.2771C>T non_coding_transcript_exon_variant 0.98
rrl 1476429 n.2772A>C non_coding_transcript_exon_variant 0.98
rrl 1476466 n.2809C>T non_coding_transcript_exon_variant 0.98
rrl 1476481 n.2824T>C non_coding_transcript_exon_variant 0.98
rrl 1476506 n.2849T>C non_coding_transcript_exon_variant 0.95
rrl 1476514 n.2857C>T non_coding_transcript_exon_variant 0.95
rrl 1476517 n.2860C>T non_coding_transcript_exon_variant 0.92
rrl 1476519 n.2862C>G non_coding_transcript_exon_variant 0.92
rrl 1476524 n.2867C>A non_coding_transcript_exon_variant 0.9
rrl 1476525 n.2868A>G non_coding_transcript_exon_variant 0.93
rrl 1476530 n.2873C>T non_coding_transcript_exon_variant 0.92
rrl 1476536 n.2879G>A non_coding_transcript_exon_variant 0.9
rrl 1476537 n.2880A>G non_coding_transcript_exon_variant 0.9
rrl 1476538 n.2881A>G non_coding_transcript_exon_variant 0.9
rrl 1476540 n.2883C>G non_coding_transcript_exon_variant 0.91
rrl 1476547 n.2890C>T non_coding_transcript_exon_variant 0.93
rrl 1476567 n.2910C>T non_coding_transcript_exon_variant 0.92
rrl 1476572 n.2915G>A non_coding_transcript_exon_variant 0.93
rrl 1476573 n.2916A>T non_coding_transcript_exon_variant 0.93
rrl 1476584 n.2927C>T non_coding_transcript_exon_variant 0.87
rrl 1476595 n.2938C>G non_coding_transcript_exon_variant 0.4
rrl 1476596 n.2939C>T non_coding_transcript_exon_variant 0.18
fabG1 1674013 p.Arg192Cys missense_variant 0.15
inhA 1674033 c.-169T>C upstream_gene_variant 0.12
rpsA 1834918 c.1377C>A synonymous_variant 0.29
rpsA 1834946 p.Gln469Lys missense_variant 0.18
tlyA 1917870 c.-70C>T upstream_gene_variant 0.15
tlyA 1917972 c.33A>G synonymous_variant 1.0
tlyA 1918258 p.His107Asn missense_variant 0.14
ndh 2101963 p.Glu360Asp missense_variant 0.2
ndh 2102399 p.Asp215Val missense_variant 0.4
ndh 2102905 c.138C>T synonymous_variant 0.14
ndh 2103108 c.-66G>T upstream_gene_variant 0.17
PPE35 2167916 c.2696delT frameshift_variant 0.14
PPE35 2167924 p.Gly897Cys missense_variant 0.14
PPE35 2168130 p.Pro828Gln missense_variant 0.17
PPE35 2168728 p.Gly629Arg missense_variant 1.0
PPE35 2169602 c.1011C>A synonymous_variant 0.29
PPE35 2169797 c.816G>T synonymous_variant 0.22
PPE35 2170048 p.Leu189Val missense_variant 0.18
PPE35 2170053 p.Thr187Ser missense_variant 0.17
PPE35 2170438 p.Gly59Cys missense_variant 0.13
Rv1979c 2222845 p.Gly107Val missense_variant 0.2
Rv1979c 2223293 c.-129A>G upstream_gene_variant 1.0
pncA 2290002 c.-761T>C upstream_gene_variant 0.12
eis 2714608 p.Arg242Met missense_variant 0.18
folC 2746142 p.Pro486Arg missense_variant 0.18
folC 2746978 c.621C>T synonymous_variant 0.17
folC 2747097 p.Val168Ile missense_variant 0.18
folC 2747440 p.Leu53Phe missense_variant 0.15
pepQ 2859418 p.Gly334Asp missense_variant 0.18
Rv2752c 3065285 p.Ile303Phe missense_variant 0.2
Rv2752c 3065497 p.Arg232Leu missense_variant 0.2
Rv2752c 3066015 c.177G>T synonymous_variant 0.29
thyX 3067268 c.678G>T synonymous_variant 0.14
thyA 3073914 c.557delA frameshift_variant 0.22
thyA 3074537 c.-66G>C upstream_gene_variant 0.2
fbiD 3339672 c.555G>T synonymous_variant 0.33
fprA 3473871 c.-136G>C upstream_gene_variant 0.12
fprA 3474734 p.Lys243Met missense_variant 0.18
fprA 3475365 c.1362delG frameshift_variant 0.22
whiB7 3568797 c.-118G>T upstream_gene_variant 0.2
Rv3236c 3612280 c.837C>A synonymous_variant 0.29
Rv3236c 3612953 p.Gly55Asp missense_variant 0.22
fbiA 3640910 c.373dupC frameshift_variant 0.17
fbiB 3642209 c.675C>T synonymous_variant 0.29
rpoA 3878050 p.Arg153Leu missense_variant 0.29
rpoA 3878406 c.102G>T synonymous_variant 0.27
rpoA 3878469 c.39C>A synonymous_variant 0.67
ddn 3987291 p.Glu150Lys missense_variant 0.15
clpC1 4038488 c.2217C>T synonymous_variant 0.13
clpC1 4039505 c.1200C>T synonymous_variant 0.17
embC 4240148 p.Gly96* stop_gained 0.25
embC 4240453 c.591C>T synonymous_variant 0.18
embC 4241109 p.Ala416Glu missense_variant 0.33
embC 4241179 c.1317G>T synonymous_variant 0.22
embC 4241214 p.Val451Asp missense_variant 0.15
embC 4241654 p.Gly598Trp missense_variant 0.25
embA 4242643 c.-590C>T upstream_gene_variant 1.0
embC 4242877 p.Glu1005Asp missense_variant 0.13
embC 4242984 p.Arg1041Leu missense_variant 0.22
embA 4244663 c.1431C>A synonymous_variant 0.14
embA 4244875 p.Pro548Leu missense_variant 0.2
embB 4246148 c.-366G>T upstream_gene_variant 0.18
embA 4246392 p.Trp1054Arg missense_variant 0.13
embB 4246544 p.Thr11Pro missense_variant 0.22
embB 4246548 p.Pro12Gln missense_variant 0.25
embB 4246555 c.42G>C synonymous_variant 0.25
embB 4246556 p.Ala15Pro missense_variant 0.25
embB 4246676 c.164delT frameshift_variant 0.15
embB 4247024 p.Pro171Ala missense_variant 0.22
embB 4247184 p.Gly224Val missense_variant 0.14
embB 4247752 c.1239G>C synonymous_variant 0.13
aftB 4267126 p.Thr571Ala missense_variant 0.11
ethR 4327123 c.-426G>T upstream_gene_variant 0.15
whiB6 4338595 c.-75delG upstream_gene_variant 1.0
Rv3083 3448507 c.5_*1408del frameshift_variant&stop_lost&splice_region_variant 1.0