Run ID: ERR2229358
Sample name:
Date: 31-03-2023 17:05:29
Number of reads: 683013
Percentage reads mapped: 14.84
Strain: lineage4.8
Drug-resistance: Other
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.8 | Euro-American (mainly T) | T1;T2;T3;T5 | RD219 | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|---|---|---|---|---|
rrs | 1472733 | n.888G>A | non_coding_transcript_exon_variant | 0.99 | streptomycin |
thyA | 3074223 | p.Trp83Cys | missense_variant | 0.15 | para-aminosalicylic_acid |
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 6469 | c.-833T>C | upstream_gene_variant | 0.11 |
gyrA | 7064 | c.-238C>A | upstream_gene_variant | 0.15 |
gyrB | 7166 | p.Ala643Ser | missense_variant | 0.29 |
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 8352 | p.Gly351Arg | missense_variant | 0.13 |
gyrA | 8466 | p.His389Asn | missense_variant | 0.33 |
gyrA | 8553 | c.1252C>A | synonymous_variant | 0.17 |
gyrA | 9475 | p.Val725Ala | missense_variant | 0.17 |
fgd1 | 491072 | p.Tyr97Phe | missense_variant | 0.18 |
fgd1 | 491201 | p.Arg140Leu | missense_variant | 0.25 |
mshA | 575226 | c.-122C>A | upstream_gene_variant | 0.14 |
mshA | 576108 | p.Ala254Gly | missense_variant | 0.25 |
ccsA | 620480 | p.Leu197Pro | missense_variant | 0.11 |
rpoB | 760802 | c.996C>A | synonymous_variant | 0.33 |
rpoC | 763160 | c.-210G>A | upstream_gene_variant | 0.14 |
rpoB | 763234 | p.Glu1143Val | missense_variant | 0.17 |
rpoC | 763289 | c.-81C>G | upstream_gene_variant | 0.17 |
rpoC | 763596 | p.Glu76Gly | missense_variant | 0.2 |
rpoC | 764545 | c.1176C>G | synonymous_variant | 0.13 |
rpoC | 764956 | c.1587T>C | synonymous_variant | 0.12 |
rpoC | 765180 | p.Gly604Val | missense_variant | 0.13 |
rpoC | 765336 | p.Trp656* | stop_gained | 0.15 |
rpoC | 767266 | c.3897G>A | synonymous_variant | 0.15 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
mmpL5 | 775834 | p.Ala883Thr | missense_variant | 0.13 |
mmpL5 | 775910 | c.2571G>T | synonymous_variant | 0.2 |
mmpL5 | 776331 | p.Arg717Leu | missense_variant | 0.14 |
mmpL5 | 776547 | p.Met645Thr | missense_variant | 0.15 |
mmpL5 | 776562 | p.Glu640Ala | missense_variant | 0.12 |
mmpL5 | 777750 | p.Arg244His | missense_variant | 0.14 |
mmpR5 | 779398 | p.Arg137Trp | missense_variant | 0.17 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
rpsL | 781491 | c.-69C>A | upstream_gene_variant | 0.13 |
fbiC | 1303543 | p.Lys205Glu | missense_variant | 0.13 |
fbiC | 1303665 | c.735G>T | synonymous_variant | 0.14 |
fbiC | 1303747 | p.Thr273Ala | missense_variant | 1.0 |
fbiC | 1304332 | p.Ser468Cys | missense_variant | 0.14 |
fbiC | 1304352 | c.1422A>G | synonymous_variant | 0.13 |
fbiC | 1304730 | c.1800C>T | synonymous_variant | 0.17 |
Rv1258c | 1406222 | c.1119C>A | synonymous_variant | 0.14 |
Rv1258c | 1406561 | c.780G>T | synonymous_variant | 0.17 |
Rv1258c | 1407188 | c.153C>A | synonymous_variant | 0.17 |
Rv1258c | 1407353 | c.-13A>C | upstream_gene_variant | 0.12 |
embR | 1416378 | p.Asn324Asp | missense_variant | 0.14 |
embR | 1417030 | c.318C>A | synonymous_variant | 0.13 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrs | 1471782 | n.-64C>A | upstream_gene_variant | 0.25 |
rrs | 1471850 | n.5G>T | non_coding_transcript_exon_variant | 0.92 |
rrs | 1471852 | n.7T>A | non_coding_transcript_exon_variant | 0.93 |
rrs | 1471878 | n.33C>T | non_coding_transcript_exon_variant | 0.89 |
rrs | 1471891 | n.46C>T | non_coding_transcript_exon_variant | 0.16 |
rrs | 1471896 | n.51T>C | non_coding_transcript_exon_variant | 0.84 |
rrs | 1471900 | n.55C>T | non_coding_transcript_exon_variant | 0.84 |
rrs | 1471914 | n.69A>G | non_coding_transcript_exon_variant | 0.29 |
rrs | 1471924 | n.79C>A | non_coding_transcript_exon_variant | 0.4 |
rrs | 1472106 | n.261G>A | non_coding_transcript_exon_variant | 0.76 |
rrs | 1472112 | n.267C>T | non_coding_transcript_exon_variant | 0.81 |
rrs | 1472122 | n.277G>A | non_coding_transcript_exon_variant | 0.8 |
rrs | 1472127 | n.282C>T | non_coding_transcript_exon_variant | 0.82 |
rrs | 1472128 | n.283G>A | non_coding_transcript_exon_variant | 0.82 |
rrs | 1472129 | n.284G>C | non_coding_transcript_exon_variant | 0.82 |
rrs | 1472137 | n.292G>A | non_coding_transcript_exon_variant | 0.89 |
rrs | 1472150 | n.305T>A | non_coding_transcript_exon_variant | 0.94 |
rrs | 1472151 | n.306C>T | non_coding_transcript_exon_variant | 0.94 |
rrs | 1472153 | n.308G>A | non_coding_transcript_exon_variant | 0.17 |
rrs | 1472164 | n.319G>A | non_coding_transcript_exon_variant | 0.96 |
rrs | 1472172 | n.327T>C | non_coding_transcript_exon_variant | 0.97 |
rrs | 1472177 | n.332C>T | non_coding_transcript_exon_variant | 0.97 |
rrs | 1472203 | n.358G>A | non_coding_transcript_exon_variant | 0.97 |
rrs | 1472210 | n.365A>C | non_coding_transcript_exon_variant | 0.99 |
rrs | 1472213 | n.368G>C | non_coding_transcript_exon_variant | 0.99 |
rrs | 1472215 | n.370A>G | non_coding_transcript_exon_variant | 0.99 |
rrs | 1472225 | n.380C>A | non_coding_transcript_exon_variant | 0.99 |
rrs | 1472234 | n.389T>C | non_coding_transcript_exon_variant | 0.99 |
rrs | 1472236 | n.391C>G | non_coding_transcript_exon_variant | 0.98 |
rrs | 1472240 | n.395G>A | non_coding_transcript_exon_variant | 0.99 |
rrs | 1472251 | n.406G>A | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472253 | n.408G>T | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472259 | n.414C>A | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472262 | n.417C>T | non_coding_transcript_exon_variant | 0.83 |
rrs | 1472269 | n.424G>A | non_coding_transcript_exon_variant | 0.73 |
rrs | 1472271 | n.426T>C | non_coding_transcript_exon_variant | 0.73 |
rrs | 1472338 | n.493A>C | non_coding_transcript_exon_variant | 0.25 |
rrs | 1472339 | n.494C>A | non_coding_transcript_exon_variant | 0.25 |
rrs | 1472344 | n.499C>T | non_coding_transcript_exon_variant | 0.81 |
rrs | 1472378 | n.533G>T | non_coding_transcript_exon_variant | 0.89 |
rrs | 1472379 | n.534T>G | non_coding_transcript_exon_variant | 0.91 |
rrs | 1472382 | n.537G>A | non_coding_transcript_exon_variant | 0.94 |
rrs | 1472389 | n.544G>A | non_coding_transcript_exon_variant | 0.94 |
rrs | 1472400 | n.555C>T | non_coding_transcript_exon_variant | 0.91 |
rrs | 1472412 | n.567A>C | non_coding_transcript_exon_variant | 0.85 |
rrs | 1472415 | n.570T>G | non_coding_transcript_exon_variant | 0.83 |
rrs | 1472422 | n.577T>C | non_coding_transcript_exon_variant | 0.71 |
rrs | 1472428 | n.583G>T | non_coding_transcript_exon_variant | 0.75 |
rrs | 1472505 | n.660G>A | non_coding_transcript_exon_variant | 0.43 |
rrs | 1472507 | n.662C>G | non_coding_transcript_exon_variant | 0.76 |
rrs | 1472517 | n.672T>A | non_coding_transcript_exon_variant | 0.86 |
rrs | 1472518 | n.673G>T | non_coding_transcript_exon_variant | 0.87 |
rrs | 1472530 | n.685G>A | non_coding_transcript_exon_variant | 0.95 |
rrs | 1472541 | n.696T>G | non_coding_transcript_exon_variant | 0.79 |
rrs | 1472557 | n.712G>A | non_coding_transcript_exon_variant | 0.98 |
rrs | 1472570 | n.725G>A | non_coding_transcript_exon_variant | 0.95 |
rrs | 1472571 | n.726G>C | non_coding_transcript_exon_variant | 0.95 |
rrs | 1472573 | n.728C>T | non_coding_transcript_exon_variant | 0.95 |
rrs | 1472579 | n.734G>T | non_coding_transcript_exon_variant | 0.95 |
rrs | 1472581 | n.736A>T | non_coding_transcript_exon_variant | 0.95 |
rrs | 1472596 | n.751G>T | non_coding_transcript_exon_variant | 0.96 |
rrs | 1472598 | n.753A>T | non_coding_transcript_exon_variant | 0.96 |
rrs | 1472614 | n.769G>T | non_coding_transcript_exon_variant | 0.96 |
rrs | 1472616 | n.771G>A | non_coding_transcript_exon_variant | 0.96 |
rrs | 1472655 | n.810G>A | non_coding_transcript_exon_variant | 0.95 |
rrs | 1472658 | n.813G>A | non_coding_transcript_exon_variant | 0.9 |
rrs | 1472661 | n.816A>G | non_coding_transcript_exon_variant | 0.89 |
rrs | 1472665 | n.820G>A | non_coding_transcript_exon_variant | 0.89 |
rrs | 1472669 | n.824_825insTAGG | non_coding_transcript_exon_variant | 0.86 |
rrs | 1472695 | n.850C>T | non_coding_transcript_exon_variant | 0.85 |
rrs | 1472697 | n.852T>C | non_coding_transcript_exon_variant | 0.85 |
rrs | 1472713 | n.868T>C | non_coding_transcript_exon_variant | 0.95 |
rrs | 1472716 | n.871C>T | non_coding_transcript_exon_variant | 0.97 |
rrs | 1472742 | n.897C>T | non_coding_transcript_exon_variant | 0.99 |
rrs | 1472744 | n.899A>G | non_coding_transcript_exon_variant | 0.99 |
rrs | 1472767 | n.922G>A | non_coding_transcript_exon_variant | 0.98 |
rrs | 1472781 | n.936C>T | non_coding_transcript_exon_variant | 0.98 |
rrs | 1472793 | n.948A>T | non_coding_transcript_exon_variant | 0.94 |
rrs | 1472803 | n.958T>A | non_coding_transcript_exon_variant | 0.95 |
rrs | 1472824 | n.979T>A | non_coding_transcript_exon_variant | 0.82 |
rrs | 1472880 | n.1035_1036insA | non_coding_transcript_exon_variant | 0.76 |
rrs | 1472895 | n.1050C>T | non_coding_transcript_exon_variant | 0.96 |
rrs | 1472953 | n.1108G>A | non_coding_transcript_exon_variant | 0.27 |
rrs | 1473009 | n.1164T>C | non_coding_transcript_exon_variant | 0.15 |
rrs | 1473035 | n.1190G>A | non_coding_transcript_exon_variant | 0.58 |
rrs | 1473053 | n.1208T>A | non_coding_transcript_exon_variant | 0.5 |
rrs | 1473054 | n.1209C>T | non_coding_transcript_exon_variant | 0.4 |
rrs | 1473055 | n.1210C>T | non_coding_transcript_exon_variant | 0.4 |
rrs | 1473056 | n.1211A>T | non_coding_transcript_exon_variant | 0.4 |
rrs | 1473062 | n.1217T>A | non_coding_transcript_exon_variant | 0.4 |
rrs | 1473068 | n.1223A>G | non_coding_transcript_exon_variant | 0.36 |
rrs | 1473080 | n.1235C>A | non_coding_transcript_exon_variant | 0.29 |
rrs | 1473082 | n.1237G>A | non_coding_transcript_exon_variant | 0.25 |
rrs | 1473083 | n.1238G>A | non_coding_transcript_exon_variant | 0.22 |
rrs | 1473131 | n.1286G>T | non_coding_transcript_exon_variant | 0.42 |
rrs | 1473145 | n.1300C>T | non_coding_transcript_exon_variant | 0.78 |
rrs | 1473147 | n.1302G>T | non_coding_transcript_exon_variant | 0.78 |
rrs | 1473148 | n.1303G>A | non_coding_transcript_exon_variant | 0.81 |
rrs | 1473163 | n.1318C>T | non_coding_transcript_exon_variant | 0.75 |
rrs | 1473164 | n.1319C>A | non_coding_transcript_exon_variant | 0.75 |
rrs | 1473166 | n.1321G>A | non_coding_transcript_exon_variant | 0.75 |
rrs | 1473172 | n.1327T>C | non_coding_transcript_exon_variant | 0.8 |
rrs | 1473173 | n.1328C>T | non_coding_transcript_exon_variant | 0.8 |
rrs | 1473177 | n.1332G>A | non_coding_transcript_exon_variant | 0.85 |
rrs | 1473191 | n.1346C>T | non_coding_transcript_exon_variant | 0.88 |
rrs | 1473206 | n.1361G>A | non_coding_transcript_exon_variant | 0.92 |
rrs | 1473226 | n.1381C>T | non_coding_transcript_exon_variant | 0.96 |
rrs | 1473248 | n.1403G>A | non_coding_transcript_exon_variant | 0.84 |
rrs | 1473249 | n.1404T>C | non_coding_transcript_exon_variant | 0.84 |
rrs | 1473252 | n.1407T>C | non_coding_transcript_exon_variant | 0.84 |
rrs | 1473255 | n.1410A>G | non_coding_transcript_exon_variant | 0.84 |
rrs | 1473259 | n.1414C>T | non_coding_transcript_exon_variant | 0.88 |
rrs | 1473260 | n.1415G>T | non_coding_transcript_exon_variant | 0.9 |
rrs | 1473276 | n.1431A>G | non_coding_transcript_exon_variant | 0.68 |
rrs | 1473327 | n.1482A>G | non_coding_transcript_exon_variant | 0.38 |
rrs | 1473328 | n.1483C>T | non_coding_transcript_exon_variant | 0.38 |
rrs | 1473352 | n.1507C>T | non_coding_transcript_exon_variant | 0.96 |
rrl | 1473388 | n.-270G>T | upstream_gene_variant | 0.5 |
rrl | 1473792 | n.135C>T | non_coding_transcript_exon_variant | 0.71 |
rrl | 1473797 | n.140G>T | non_coding_transcript_exon_variant | 0.67 |
rrl | 1473803 | n.146G>A | non_coding_transcript_exon_variant | 0.6 |
rrl | 1473806 | n.149C>T | non_coding_transcript_exon_variant | 0.67 |
rrl | 1474001 | n.344C>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474092 | n.435G>A | non_coding_transcript_exon_variant | 0.4 |
rrl | 1474218 | n.561T>A | non_coding_transcript_exon_variant | 0.58 |
rrl | 1474236 | n.579G>A | non_coding_transcript_exon_variant | 0.33 |
rrl | 1474249 | n.592G>A | non_coding_transcript_exon_variant | 0.15 |
rrl | 1474252 | n.595T>A | non_coding_transcript_exon_variant | 0.15 |
rrl | 1474255 | n.598C>T | non_coding_transcript_exon_variant | 0.15 |
rrl | 1474310 | n.653T>G | non_coding_transcript_exon_variant | 0.13 |
rrl | 1474330 | n.673A>T | non_coding_transcript_exon_variant | 0.33 |
rrl | 1474338 | n.681G>A | non_coding_transcript_exon_variant | 0.4 |
rrl | 1474341 | n.684T>G | non_coding_transcript_exon_variant | 0.4 |
rrl | 1474348 | n.691C>T | non_coding_transcript_exon_variant | 0.4 |
rrl | 1474672 | n.1015C>A | non_coding_transcript_exon_variant | 0.5 |
rrl | 1474749 | n.1092C>T | non_coding_transcript_exon_variant | 0.25 |
rrl | 1474752 | n.1096delA | non_coding_transcript_exon_variant | 0.29 |
rrl | 1474760 | n.1103A>G | non_coding_transcript_exon_variant | 0.22 |
rrl | 1474777 | n.1120T>C | non_coding_transcript_exon_variant | 0.22 |
rrl | 1474779 | n.1122G>A | non_coding_transcript_exon_variant | 0.29 |
rrl | 1474782 | n.1125G>A | non_coding_transcript_exon_variant | 0.29 |
rrl | 1474839 | n.1182C>T | non_coding_transcript_exon_variant | 0.87 |
rrl | 1474844 | n.1187G>T | non_coding_transcript_exon_variant | 0.88 |
rrl | 1474864 | n.1207C>T | non_coding_transcript_exon_variant | 0.94 |
rrl | 1474866 | n.1209C>A | non_coding_transcript_exon_variant | 0.94 |
rrl | 1474869 | n.1212G>T | non_coding_transcript_exon_variant | 0.95 |
rrl | 1474892 | n.1235G>A | non_coding_transcript_exon_variant | 0.91 |
rrl | 1474896 | n.1239A>G | non_coding_transcript_exon_variant | 0.91 |
rrl | 1474902 | n.1245T>C | non_coding_transcript_exon_variant | 0.89 |
rrl | 1474903 | n.1246T>A | non_coding_transcript_exon_variant | 0.88 |
rrl | 1474904 | n.1247G>C | non_coding_transcript_exon_variant | 0.88 |
rrl | 1474913 | n.1256T>A | non_coding_transcript_exon_variant | 0.83 |
rrl | 1474920 | n.1263G>C | non_coding_transcript_exon_variant | 0.79 |
rrl | 1475274 | n.1617T>C | non_coding_transcript_exon_variant | 0.4 |
rrl | 1475552 | n.1895G>C | non_coding_transcript_exon_variant | 0.5 |
rrl | 1475574 | n.1917C>A | non_coding_transcript_exon_variant | 0.77 |
rrl | 1475713 | n.2056C>G | non_coding_transcript_exon_variant | 0.84 |
rrl | 1475716 | n.2059A>G | non_coding_transcript_exon_variant | 0.85 |
rrl | 1475782 | n.2125T>C | non_coding_transcript_exon_variant | 0.5 |
rrl | 1475783 | n.2126T>G | non_coding_transcript_exon_variant | 0.5 |
rrl | 1475803 | n.2146T>C | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475804 | n.2147G>C | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475816 | n.2159C>G | non_coding_transcript_exon_variant | 0.99 |
rrl | 1475817 | n.2160A>G | non_coding_transcript_exon_variant | 0.99 |
rrl | 1475858 | n.2201T>C | non_coding_transcript_exon_variant | 0.94 |
rrl | 1475866 | n.2209T>A | non_coding_transcript_exon_variant | 0.94 |
rrl | 1476141 | n.2484A>G | non_coding_transcript_exon_variant | 0.65 |
rrl | 1476153 | n.2496T>C | non_coding_transcript_exon_variant | 0.68 |
rrl | 1476165 | n.2508T>G | non_coding_transcript_exon_variant | 0.78 |
rrl | 1476179 | n.2522C>T | non_coding_transcript_exon_variant | 0.78 |
rrl | 1476194 | n.2537A>G | non_coding_transcript_exon_variant | 0.76 |
rrl | 1476195 | n.2538C>A | non_coding_transcript_exon_variant | 0.76 |
rrl | 1476196 | n.2539C>A | non_coding_transcript_exon_variant | 0.76 |
rrl | 1476200 | n.2543A>T | non_coding_transcript_exon_variant | 0.87 |
rrl | 1476201 | n.2544C>T | non_coding_transcript_exon_variant | 0.87 |
rrl | 1476204 | n.2547C>A | non_coding_transcript_exon_variant | 0.87 |
rrl | 1476210 | n.2553G>T | non_coding_transcript_exon_variant | 0.87 |
rrl | 1476211 | n.2554G>T | non_coding_transcript_exon_variant | 0.87 |
rrl | 1476212 | n.2555T>C | non_coding_transcript_exon_variant | 0.87 |
rrl | 1476213 | n.2556G>A | non_coding_transcript_exon_variant | 0.87 |
rrl | 1476214 | n.2557G>T | non_coding_transcript_exon_variant | 0.87 |
rrl | 1476215 | n.2558C>A | non_coding_transcript_exon_variant | 0.88 |
rrl | 1476225 | n.2568T>G | non_coding_transcript_exon_variant | 0.97 |
rrl | 1476229 | n.2572C>T | non_coding_transcript_exon_variant | 0.99 |
rrl | 1476260 | n.2603A>G | non_coding_transcript_exon_variant | 0.97 |
rrl | 1476268 | n.2611A>T | non_coding_transcript_exon_variant | 0.97 |
rrl | 1476275 | n.2618T>A | non_coding_transcript_exon_variant | 0.97 |
rrl | 1476279 | n.2622G>A | non_coding_transcript_exon_variant | 0.96 |
rrl | 1476280 | n.2623A>C | non_coding_transcript_exon_variant | 0.96 |
rrl | 1476293 | n.2636C>T | non_coding_transcript_exon_variant | 0.94 |
rrl | 1476294 | n.2637A>G | non_coding_transcript_exon_variant | 0.94 |
rrl | 1476295 | n.2638C>G | non_coding_transcript_exon_variant | 0.93 |
rrl | 1476296 | n.2639C>T | non_coding_transcript_exon_variant | 0.93 |
rrl | 1476297 | n.2640C>T | non_coding_transcript_exon_variant | 0.93 |
rrl | 1476301 | n.2644A>C | non_coding_transcript_exon_variant | 0.93 |
rrl | 1476302 | n.2645G>A | non_coding_transcript_exon_variant | 0.93 |
rrl | 1476311 | n.2654G>C | non_coding_transcript_exon_variant | 0.9 |
rrl | 1476312 | n.2655T>C | non_coding_transcript_exon_variant | 0.89 |
rrl | 1476313 | n.2656G>A | non_coding_transcript_exon_variant | 0.89 |
rrl | 1476332 | n.2675G>C | non_coding_transcript_exon_variant | 0.96 |
rrl | 1476353 | n.2696G>T | non_coding_transcript_exon_variant | 0.97 |
rrl | 1476358 | n.2701T>C | non_coding_transcript_exon_variant | 0.97 |
rrl | 1476369 | n.2712C>T | non_coding_transcript_exon_variant | 0.97 |
rrl | 1476372 | n.2715T>C | non_coding_transcript_exon_variant | 0.97 |
rrl | 1476382 | n.2725A>G | non_coding_transcript_exon_variant | 0.98 |
rrl | 1476383 | n.2726T>A | non_coding_transcript_exon_variant | 0.98 |
rrl | 1476408 | n.2751G>A | non_coding_transcript_exon_variant | 0.98 |
rrl | 1476425 | n.2768G>T | non_coding_transcript_exon_variant | 0.98 |
rrl | 1476428 | n.2771C>T | non_coding_transcript_exon_variant | 0.98 |
rrl | 1476429 | n.2772A>C | non_coding_transcript_exon_variant | 0.98 |
rrl | 1476466 | n.2809C>T | non_coding_transcript_exon_variant | 0.98 |
rrl | 1476481 | n.2824T>C | non_coding_transcript_exon_variant | 0.98 |
rrl | 1476506 | n.2849T>C | non_coding_transcript_exon_variant | 0.95 |
rrl | 1476514 | n.2857C>T | non_coding_transcript_exon_variant | 0.95 |
rrl | 1476517 | n.2860C>T | non_coding_transcript_exon_variant | 0.92 |
rrl | 1476519 | n.2862C>G | non_coding_transcript_exon_variant | 0.92 |
rrl | 1476524 | n.2867C>A | non_coding_transcript_exon_variant | 0.9 |
rrl | 1476525 | n.2868A>G | non_coding_transcript_exon_variant | 0.93 |
rrl | 1476530 | n.2873C>T | non_coding_transcript_exon_variant | 0.92 |
rrl | 1476536 | n.2879G>A | non_coding_transcript_exon_variant | 0.9 |
rrl | 1476537 | n.2880A>G | non_coding_transcript_exon_variant | 0.9 |
rrl | 1476538 | n.2881A>G | non_coding_transcript_exon_variant | 0.9 |
rrl | 1476540 | n.2883C>G | non_coding_transcript_exon_variant | 0.91 |
rrl | 1476547 | n.2890C>T | non_coding_transcript_exon_variant | 0.93 |
rrl | 1476567 | n.2910C>T | non_coding_transcript_exon_variant | 0.92 |
rrl | 1476572 | n.2915G>A | non_coding_transcript_exon_variant | 0.93 |
rrl | 1476573 | n.2916A>T | non_coding_transcript_exon_variant | 0.93 |
rrl | 1476584 | n.2927C>T | non_coding_transcript_exon_variant | 0.87 |
rrl | 1476595 | n.2938C>G | non_coding_transcript_exon_variant | 0.4 |
rrl | 1476596 | n.2939C>T | non_coding_transcript_exon_variant | 0.18 |
fabG1 | 1674013 | p.Arg192Cys | missense_variant | 0.15 |
inhA | 1674033 | c.-169T>C | upstream_gene_variant | 0.12 |
rpsA | 1834918 | c.1377C>A | synonymous_variant | 0.29 |
rpsA | 1834946 | p.Gln469Lys | missense_variant | 0.18 |
tlyA | 1917870 | c.-70C>T | upstream_gene_variant | 0.15 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
tlyA | 1918258 | p.His107Asn | missense_variant | 0.14 |
ndh | 2101963 | p.Glu360Asp | missense_variant | 0.2 |
ndh | 2102399 | p.Asp215Val | missense_variant | 0.4 |
ndh | 2102905 | c.138C>T | synonymous_variant | 0.14 |
ndh | 2103108 | c.-66G>T | upstream_gene_variant | 0.17 |
PPE35 | 2167916 | c.2696delT | frameshift_variant | 0.14 |
PPE35 | 2167924 | p.Gly897Cys | missense_variant | 0.14 |
PPE35 | 2168130 | p.Pro828Gln | missense_variant | 0.17 |
PPE35 | 2168728 | p.Gly629Arg | missense_variant | 1.0 |
PPE35 | 2169602 | c.1011C>A | synonymous_variant | 0.29 |
PPE35 | 2169797 | c.816G>T | synonymous_variant | 0.22 |
PPE35 | 2170048 | p.Leu189Val | missense_variant | 0.18 |
PPE35 | 2170053 | p.Thr187Ser | missense_variant | 0.17 |
PPE35 | 2170438 | p.Gly59Cys | missense_variant | 0.13 |
Rv1979c | 2222845 | p.Gly107Val | missense_variant | 0.2 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
pncA | 2290002 | c.-761T>C | upstream_gene_variant | 0.12 |
eis | 2714608 | p.Arg242Met | missense_variant | 0.18 |
folC | 2746142 | p.Pro486Arg | missense_variant | 0.18 |
folC | 2746978 | c.621C>T | synonymous_variant | 0.17 |
folC | 2747097 | p.Val168Ile | missense_variant | 0.18 |
folC | 2747440 | p.Leu53Phe | missense_variant | 0.15 |
pepQ | 2859418 | p.Gly334Asp | missense_variant | 0.18 |
Rv2752c | 3065285 | p.Ile303Phe | missense_variant | 0.2 |
Rv2752c | 3065497 | p.Arg232Leu | missense_variant | 0.2 |
Rv2752c | 3066015 | c.177G>T | synonymous_variant | 0.29 |
thyX | 3067268 | c.678G>T | synonymous_variant | 0.14 |
thyA | 3073914 | c.557delA | frameshift_variant | 0.22 |
thyA | 3074537 | c.-66G>C | upstream_gene_variant | 0.2 |
fbiD | 3339672 | c.555G>T | synonymous_variant | 0.33 |
fprA | 3473871 | c.-136G>C | upstream_gene_variant | 0.12 |
fprA | 3474734 | p.Lys243Met | missense_variant | 0.18 |
fprA | 3475365 | c.1362delG | frameshift_variant | 0.22 |
whiB7 | 3568797 | c.-118G>T | upstream_gene_variant | 0.2 |
Rv3236c | 3612280 | c.837C>A | synonymous_variant | 0.29 |
Rv3236c | 3612953 | p.Gly55Asp | missense_variant | 0.22 |
fbiA | 3640910 | c.373dupC | frameshift_variant | 0.17 |
fbiB | 3642209 | c.675C>T | synonymous_variant | 0.29 |
rpoA | 3878050 | p.Arg153Leu | missense_variant | 0.29 |
rpoA | 3878406 | c.102G>T | synonymous_variant | 0.27 |
rpoA | 3878469 | c.39C>A | synonymous_variant | 0.67 |
ddn | 3987291 | p.Glu150Lys | missense_variant | 0.15 |
clpC1 | 4038488 | c.2217C>T | synonymous_variant | 0.13 |
clpC1 | 4039505 | c.1200C>T | synonymous_variant | 0.17 |
embC | 4240148 | p.Gly96* | stop_gained | 0.25 |
embC | 4240453 | c.591C>T | synonymous_variant | 0.18 |
embC | 4241109 | p.Ala416Glu | missense_variant | 0.33 |
embC | 4241179 | c.1317G>T | synonymous_variant | 0.22 |
embC | 4241214 | p.Val451Asp | missense_variant | 0.15 |
embC | 4241654 | p.Gly598Trp | missense_variant | 0.25 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embC | 4242877 | p.Glu1005Asp | missense_variant | 0.13 |
embC | 4242984 | p.Arg1041Leu | missense_variant | 0.22 |
embA | 4244663 | c.1431C>A | synonymous_variant | 0.14 |
embA | 4244875 | p.Pro548Leu | missense_variant | 0.2 |
embB | 4246148 | c.-366G>T | upstream_gene_variant | 0.18 |
embA | 4246392 | p.Trp1054Arg | missense_variant | 0.13 |
embB | 4246544 | p.Thr11Pro | missense_variant | 0.22 |
embB | 4246548 | p.Pro12Gln | missense_variant | 0.25 |
embB | 4246555 | c.42G>C | synonymous_variant | 0.25 |
embB | 4246556 | p.Ala15Pro | missense_variant | 0.25 |
embB | 4246676 | c.164delT | frameshift_variant | 0.15 |
embB | 4247024 | p.Pro171Ala | missense_variant | 0.22 |
embB | 4247184 | p.Gly224Val | missense_variant | 0.14 |
embB | 4247752 | c.1239G>C | synonymous_variant | 0.13 |
aftB | 4267126 | p.Thr571Ala | missense_variant | 0.11 |
ethR | 4327123 | c.-426G>T | upstream_gene_variant | 0.15 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |
Rv3083 | 3448507 | c.5_*1408del | frameshift_variant&stop_lost&splice_region_variant | 1.0 |