EBG00000313325 - n.839_845delGGGATCCinsA
Drug resistance types
41 Sensitive
3 RR-TB
17 HR-TB
9 MDR-TB
3 Pre-XDR-TB
0 XDR-TB
338 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.9 | 257 |
| La1.2 | 10 |
| lineage2.2.1 | 23 |
| La1.8.1 | 19 |
| La1.7.1 | 7 |
| lineage4.4.1.1.1 | 4 |
| lineage4.3.3 | 6 |
| lineage4.1.2 | 6 |
| lineage2.2.1.2 | 1 |
| lineage2.2.2 | 1 |
| La1.8.2 | 6 |
| lineage1.1.3 | 1 |
| lineage4.4.2 | 3 |
| lineage3 | 3 |
| La2 | 1 |
| La1.2.BCG | 6 |
| lineage4.1.2.1 | 3 |
| lineage4.1.1.3 | 3 |
| lineage4.4.1.1 | 5 |
| lineage1.1.1.1 | 2 |
| lineage4.1.1.2 | 1 |
| lineage4.3.4.2.1 | 6 |
| 1 | |
| lineage4.8 | 12 |
| lineage4.5 | 1 |
| lineage4.8;lineage4.9 | 1 |
| lineage4.3.4.1 | 2 |
| lineage4.3.4.2 | 3 |
| lineage4.3.2.1 | 4 |
| lineage2.2.1.1 | 4 |
| lineage6.2.3 | 2 |
| lineage4.3 | 1 |
| lineage4.4.1.2 | 1 |
| lineage4 | 1 |
| lineage4.7 | 1 |
| lineage1.2.2.1 | 1 |
| lineage2.2.1;lineage4 | 1 |
| La1.4 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 411 |
Geographic prevalence
Country level data for this variant is available for 7 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR13861285 | Other | lineage4.9 | None | SRR13861576 | Other | lineage4.9 | None | SRR13861351 | Other | lineage4.9 | None | SRR13861331 | Other | lineage4.9 | None | SRR13861147 | Other | lineage4.9 | None | ERR6338288 | Other | La1.2 | None | SRR5065436 | HR-TB | lineage2.2.1 | None | SRR13861415 | Other | lineage4.9 | None | SRR13861188 | Other | lineage4.9 | None | SRR7240068 | Other | La1.8.1 | None | SRR13861624 | Other | lineage4.9 | None | ERR6209443 | Other | La1.2 | None | SRR13861157 | Other | lineage4.9 | None | SRR13861724 | Other | lineage4.9 | None | SRR13861634 | Other | lineage4.9 | None | SRR13861504 | Other | lineage4.9 | None | SRR13861144 | Other | lineage4.9 | None | SRR7240064 | Other | La1.7.1 | None | SRR13861243 | Other | lineage4.9 | None | SRR2101659 | Other | lineage4.4.1.1.1 | None | SRR13861280 | Other | lineage4.9 | None | SRR21675637 | Sensitive | lineage4.3.3 | None | SRR13861579 | Other | lineage4.9 | None | DRR184991 | Other | lineage4.1.2 | vn | SRR5065440 | Other | lineage2.2.1.2 | None | SRR13861567 | Other | lineage4.9 | None | SRR13861361 | Other | lineage4.9 | None | SRR6981981 | Sensitive | lineage4.3.3 | None | SRR13861617 | Other | lineage4.9 | None | SRR6856032 | Sensitive | lineage2.2.1 | None | SRR13861555 | Other | lineage4.9 | None | SRR13861164 | Other | lineage4.9 | None | SRR13861734 | Other | lineage4.9 | None | SRR13861210 | Other | lineage4.9 | None | SRR6982494 | Other | lineage2.2.2 | None | SRR13861281 | Other | lineage4.9 | None | ERR2693238 | Sensitive | lineage4.9 | None | ERR6201910 | Other | La1.2 | None | SRR13861554 | Other | lineage4.9 | None | SRR13861470 | Other | lineage4.9 | None | SRR13861406 | Other | lineage4.9 | None | SRR13861265 | HR-TB | lineage4.9 | None | SRR13861426 | Other | lineage4.9 | None | SRR21675949 | Other | lineage4.3.3 | None | ERR6140667 | Other | La1.8.2 | None | SRR13861495 | HR-TB | lineage4.9 | None | SRR13861461 | Other | lineage4.9 | None | SRR13861491 | Other | lineage4.9 | None | SRR13861559 | Other | lineage4.9 | None | SRR13861694 | Other | lineage4.9 | None | SRR13861433 | Other | lineage4.9 | None | SRR21711124 | Other | lineage1.1.3 | None | SRR13861191 | Other | lineage4.9 | None | SRR15723287 | Other | lineage4.4.2 | None | SRR18911138 | Other | lineage3 | None | DRR120409 | HR-TB | La2 | None | SRR13861568 | Other | lineage4.9 | None | SRR1915484 | Other | La1.2.BCG | None | SRR13861219 | Other | lineage4.9 | None | SRR6896348 | Sensitive | lineage4.1.2.1 | None | SRR6982275 | Other | lineage2.2.1 | None | SRR13861693 | Other | lineage4.9 | None | SRR13861397 | HR-TB | lineage4.9 | None | SRR13861330 | Other | lineage4.9 | None | SRR1792140 | Other | La1.8.1 | None | SRR2101709 | Sensitive | lineage4.1.1.3 | None | SRR13861462 | Other | lineage4.9 | None | SRR13861516 | Other | lineage4.9 | None | SRR6896340 | Sensitive | lineage4.4.1.1 | None | DRR185000 | Other | lineage1.1.1.1 | None | SRR13861649 | Other | lineage4.9 | None | SRR6982088 | Other | lineage4.1.1.2 | None | SRR13861630 | Other | lineage4.9 | None | SRR13861463 | Other | lineage4.9 | None | SRR13861283 | Other | lineage4.9 | None | SRR13861482 | Other | lineage4.9 | None | SRR13861653 | Other | lineage4.9 | None | SRR13861479 | Other | lineage4.9 | None | SRR6982058 | HR-TB | lineage2.2.1 | None | SRR13861246 | Other | lineage4.9 | None | SRR6855851 | Other | lineage4.3.4.2.1 | None | SRR2101643 | Other | lineage2.2.1 | None | SRR13861429 | Other | lineage4.9 | None | SRR2101691 | Other | lineage2.2.1 | None | SRR13861641 | Other | lineage4.9 | None | SRR13861421 | Other | lineage4.9 | None | SRR13861299 | Other | lineage4.9 | None | SRR13861639 | Other | lineage4.9 | None | SRR13861352 | Other | lineage4.9 | None | SRR13861515 | Other | lineage4.9 | None | SRR13861691 | Other | lineage4.9 | None | ERR6198394 | Other | La1.2 | None | SRR6855905 | Other | lineage4.1.2 | None | SRR13861580 | Other | lineage4.9 | None | SRR13861702 | Other | lineage4.9 | None | SRR13861668 | Other | lineage4.9 | None | SRR13861494 | Other | lineage4.9 | None | SRR13861570 | Other | lineage4.9 | None | SRR13861179 | Other | lineage4.9 | None | SRR13861598 | Other | lineage4.9 | None | SRR13861230 | Other | lineage4.9 | None | SRR13861707 | Other | lineage4.9 | None | SRR6982104 | Sensitive | lineage2.2.1 | None | SRR13861370 | Other | lineage4.9 | None | SRR13199746 | Other | La1.7.1 | None | SRR13861735 | Other | lineage4.9 | None | SRR13861236 | Other | lineage4.9 | None | ERR6201798 | Other | La1.2 | None | SRR13861503 | Other | lineage4.9 | None | SRR6982405 | Sensitive | lineage4.4.1.1 | None | ERR2515662 | Other | lineage2.2.1 | za | SRR6982196 | Sensitive | None | SRR13861392 | Other | lineage4.9 | None | SRR13861303 | Other | lineage4.9 | None | SRR13861714 | Other | lineage4.9 | None | SRR13861217 | Other | lineage4.9 | None | SRR13861258 | Other | lineage4.9 | None | SRR7236216 | Other | La1.8.1 | None | SRR13861312 | Other | lineage4.9 | None | SRR7236369 | Other | La1.8.1 | None | SRR13861297 | Other | lineage4.9 | None | SRR1915486 | Other | La1.2.BCG | None | SRR13861244 | Other | lineage4.9 | None | SRR13861454 | Other | lineage4.9 | None | SRR13861680 | Other | lineage4.9 | None | SRR6982292 | Other | lineage4.4.1.1.1 | None | SRR6856094 | Other | lineage2.2.1 | None | SRR13861447 | Other | lineage4.9 | None | SRR6855917 | Sensitive | lineage4.8 | None | ERR2515364 | Sensitive | lineage4.1.2 | za | ERR2515916 | Other | lineage4.3.4.2.1 | za | SRR13861627 | Other | lineage4.9 | None | SRR19612366 | Other | lineage4.5 | None | SRR13861718 | Other | lineage4.9 | None | SRR7240070 | Other | La1.8.1 | None | SRR13861416 | Other | lineage4.9 | None | SRR13861438 | Other | lineage4.9 | None | SRR13861658 | Other | lineage4.9 | None | ERR2228874 | Other | lineage4.8;lineage4.9 | None | SRR13861182 | Other | lineage4.9 | None | SRR2101689 | Sensitive | lineage4.3.4.1 | None | SRR13861593 | Other | lineage4.9 | None | SRR6981966 | Other | lineage2.2.1 | None | SRR13861419 | Other | lineage4.9 | None | SRR13861383 | Other | lineage4.9 | None | SRR13861619 | Other | lineage4.9 | None | ERR3806453 | Other | lineage4.3.4.2 | None | DRR184644 | HR-TB | lineage2.2.1 | None | SRR13861651 | Other | lineage4.9 | None | ERR2515484 | Sensitive | lineage4.8 | None | SRR13861213 | Other | lineage4.9 | None | SRR13861452 | Other | lineage4.9 | None | SRR13861403 | Other | lineage4.9 | None | SRR13861325 | Other | lineage4.9 | None | SRR13861240 | Other | lineage4.9 | None | DRR184937 | Other | lineage2.2.1 | None | SRR13861487 | Other | lineage4.9 | None | SRR13861664 | Other | lineage4.9 | None | SRR13861498 | Other | lineage4.9 | None | SRR13861534 | Other | lineage4.9 | None | SRR2101693 | Sensitive | lineage4.1.2 | None | ERR6201937 | Other | La1.2 | None | SRR13861175 | Other | lineage4.9 | None | ERR6149876 | Other | La1.8.2 | None | SRR13861711 | Other | lineage4.9 | None | SRR2101628 | Other | lineage4.3.2.1 | None | ERR6201802 | Other | La1.2 | None | SRR13861323 | Other | lineage4.9 | None | ERR6201814 | Other | La1.2 | None | SRR6982148 | Sensitive | lineage2.2.1 | None | SRR13861256 | Other | lineage4.9 | None | SRR13861631 | Other | lineage4.9 | None | SRR6896339 | MDR-TB | lineage2.2.1 | None | ERR6208726 | Other | La1.2 | None | SRR13861519 | Other | lineage4.9 | None | SRR7236239 | Other | La1.7.1 | None | SRR7240069 | Other | La1.8.1 | None | SRR6982140 | Other | lineage2.2.1.1 | None | SRR13861545 | Other | lineage4.9 | None | SRR13861537 | Other | lineage4.9 | None | ERR9787116 | Other | lineage6.2.3 | None | SRR13861600 | Other | lineage4.9 | None | SRR13861195 | Other | lineage4.9 | None | SRR13861391 | Other | lineage4.9 | None | SRR13861502 | HR-TB | lineage4.9 | None | SRR1915483 | Other | La1.2.BCG | None | SRR13861523 | Other | lineage4.9 | None | ERR3797043 | Sensitive | lineage4.9 | None | SRR6982332 | Sensitive | lineage4.4.1.1 | None | SRR13861431 | Other | lineage4.9 | None | SRR6896539 | RR-TB | lineage3 | None | ERR2515460 | Other | lineage4.8 | za | SRR1792157 | Other | La1.8.1 | None | SRR6855915 | Sensitive | lineage4.9 | None | SRR13861410 | Other | lineage4.9 | None | SRR6855967 | Sensitive | lineage4.1.2 | None | SRR5065527 | Other | lineage2.2.1 | None | ERR2228888 | Other | lineage4.8 | None | SRR6982383 | Other | lineage4.3.2.1 | None | SRR21764246 | Other | lineage4.9 | None | SRR13861304 | Other | lineage4.9 | None | SRR5065506 | HR-TB | lineage1.1.1.1 | None | SRR1791909 | Other | La1.7.1 | None | SRR13861322 | Other | lineage4.9 | None | SRR13861278 | Other | lineage4.9 | None | SRR13861400 | Other | lineage4.9 | None | SRR13861254 | Other | lineage4.9 | None | SRR13861411 | Other | lineage4.9 | None | SRR13861158 | Other | lineage4.9 | None | SRR13861507 | Other | lineage4.9 | None | SRR13861143 | RR-TB | lineage4.9 | None | SRR13861697 | Other | lineage4.9 | None | SRR2101773 | Sensitive | lineage4.3.4.2.1 | None | ERR2851371 | Other | lineage4.9 | None | SRR13861206 | Other | lineage4.9 | None | SRR7236411 | Other | La1.8.1 | None | SRR13861268 | Other | lineage4.9 | None | ERR2228859 | Other | lineage4.8 | None | ERR6149875 | Other | La1.8.2 | None | SRR13861556 | Other | lineage4.9 | None | SRR13861286 | Other | lineage4.9 | None | SRR13861207 | Other | lineage4.9 | None | SRR7236253 | Other | La1.7.1 | None | ERR2515191 | Other | lineage2.2.1 | za | SRR12199431 | Other | lineage4.3 | None | SRR7240448 | Other | La1.8.1 | None | SRR13861637 | Other | lineage4.9 | None | SRR13861496 | Other | lineage4.9 | None | SRR13861150 | Other | lineage4.9 | None | SRR13861669 | Other | lineage4.9 | None | SRR7131220 | Other | lineage4.1.2.1 | None | SRR6982106 | Sensitive | lineage4.8 | None | SRR7240449 | Other | La1.8.1 | None | SRR13861162 | Other | lineage4.9 | None | SRR17567952 | Other | lineage4.4.1.2 | None | SRR13861343 | Other | lineage4.9 | None | SRR13861159 | Other | lineage4.9 | None | SRR7236372 | Other | La1.8.1 | None | SRR13861387 | Other | lineage4.9 | None | SRR13861446 | Other | lineage4.9 | None | SRR13861241 | HR-TB | lineage4.9 | None | SRR13861187 | Other | lineage4.9 | None | SRR6982050 | Other | lineage4.3.4.1 | None | SRR13861443 | Other | lineage4.9 | None | SRR13861532 | Other | lineage4.9 | None | SRR21728339 | Other | lineage3 | None | SRR13861586 | Other | lineage4.9 | None | SRR13861715 | Other | lineage4.9 | None | SRR13861336 | Other | lineage4.9 | None | SRR10315641 | MDR-TB | lineage4.4.1.1.1 | None | SRR13861232 | Other | lineage4.9 | None | SRR7236379 | Other | La1.8.1 | None | SRR13861324 | Other | lineage4.9 | None | SRR13861369 | Other | lineage4.9 | None | SRR13861282 | Other | lineage4.9 | None | SRR6981978 | Sensitive | lineage4.3.4.2.1 | None | SRR2101492 | Other | lineage4.3.2.1 | None | SRR13861457 | Other | lineage4.9 | None | SRR13861394 | Other | lineage4.9 | None | SRR13861345 | Other | lineage4.9 | None | SRR7236178 | Other | La1.8.1 | None | ERR2229033 | Other | lineage4.8 | None | SRR13861626 | Other | lineage4.9 | None | SRR13861180 | Other | lineage4.9 | None | SRR6982078 | Sensitive | lineage4.9 | None | SRR13861597 | Other | lineage4.9 | None | ERR6149870 | Other | La1.8.2 | None | SRR1915490 | Other | La1.2.BCG | None | SRR2101786 | Sensitive | lineage4.4.1.1 | None | SRR6981968 | Sensitive | lineage4.1.2 | None | ERR6149874 | Other | La1.8.2 | None | SRR13861648 | Other | lineage4.9 | None | SRR13861307 | Other | lineage4.9 | None | SRR6982174 | Sensitive | lineage4.3.3 | None | SRR13861497 | HR-TB | lineage4.9 | None | ERR6149868 | Other | La1.8.2 | None | ERR3803966 | Other | lineage6.2.3 | None | SRR13861227 | Other | lineage4.9 | None | SRR11972420 | MDR-TB | lineage2.2.1 | None | SRR13861562 | Other | lineage4.9 | None | ERR2229780 | Other | lineage4.9 | None | ERR2179857 | Sensitive | lineage4 | None | SRR13861677 | HR-TB | lineage4.9 | None | SRR13861685 | Other | lineage4.9 | None | SRR13861642 | Other | lineage4.9 | None | SRR10315603 | MDR-TB | lineage4.8 | None | SRR6044942 | HR-TB | lineage4.9 | None | SRR13861521 | Other | lineage4.9 | None | SRR13861141 | Other | lineage4.9 | None | SRR13861587 | Other | lineage4.9 | None | SRR13861186 | Other | lineage4.9 | None | SRR13861583 | Other | lineage4.9 | None | ERR3335798 | MDR-TB | lineage2.2.1 | None | SRR13861422 | Other | lineage4.9 | None | SRR13861379 | Other | lineage4.9 | None | SRR6982066 | Other | lineage4.3.2.1 | None | SRR13861589 | Other | lineage4.9 | None | SRR13861372 | Other | lineage4.9 | None | SRR6855718 | Other | lineage4.8 | None | SRR13861720 | Other | lineage4.9 | None | SRR13861692 | Other | lineage4.9 | None | SRR13861531 | Other | lineage4.9 | None | SRR13861231 | Other | lineage4.9 | None | SRR13861481 | Other | lineage4.9 | None | SRR13861314 | Other | lineage4.9 | None | SRR11972250 | Pre-XDR-TB | lineage2.2.1.1 | None | SRR6982430 | Sensitive | lineage4.3.4.2.1 | None | SRR2101678 | Sensitive | lineage4.4.1.1.1 | None | ERR4769429 | Other | lineage4.9 | None | SRR13861573 | Other | lineage4.9 | None | SRR13861584 | Other | lineage4.9 | None | SRR5526841 | MDR-TB | lineage2.2.1.1 | None | SRR21728710 | Other | lineage4.1.1.3 | None | SRR7240441 | Other | La1.8.1 | None | SRR15316549 | RR-TB | lineage4.4.2 | None | SRR13861362 | Other | lineage4.9 | None | SRR13861717 | Other | lineage4.9 | None | SRR13861161 | Other | lineage4.9 | None | SRR2101803 | Sensitive | lineage4.3.3 | None | ERR2228873 | Other | lineage4.8 | None | SRR13861377 | Other | lineage4.9 | None | SRR13861725 | Other | lineage4.9 | None | SRR13861728 | Other | lineage4.9 | None | SRR6982146 | Sensitive | lineage4.1.1.3 | None | SRR13861248 | Other | lineage4.9 | None | SRR6982337 | Sensitive | lineage4.7 | None | SRR10129602 | Sensitive | lineage4.3.4.2 | None | SRR1791921 | Other | La1.8.1 | None | SRR13861420 | Other | lineage4.9 | None | SRR13861468 | Other | lineage4.9 | None | SRR13861264 | HR-TB | lineage4.9 | None | DRR184969 | Other | lineage2.2.1.1 | vn | SRR13861389 | Other | lineage4.9 | None | SRR6824357 | Pre-XDR-TB | lineage4.4.2 | None | SRR7240063 | Other | La1.7.1 | None | SRR2101711 | Sensitive | lineage2.2.1 | None | SRR13861356 | Other | lineage4.9 | None | SRR13861329 | Other | lineage4.9 | None | ERR9786844 | Other | lineage4.3.4.2 | None | SRR1915485 | Other | La1.2.BCG | None | SRR13861696 | Other | lineage4.9 | None | SRR2101681 | Sensitive | lineage4.8 | None | SRR13861607 | Other | lineage4.9 | None | ERR2229358 | Other | lineage4.8 | None | SRR13861572 | Other | lineage4.9 | None | SRR18391760 | Other | La1.7.1 | None | SRR13861318 | Other | lineage4.9 | None | ERR2229781 | Other | lineage4.9 | None | SRR1915487 | Other | La1.2.BCG | None | SRR13861211 | HR-TB | lineage4.9 | None | SRR13861430 | Other | lineage4.9 | None | SRR7236240 | Other | La1.8.1 | None | SRR13861428 | Other | lineage4.9 | None | SRR13861200 | Other | lineage4.9 | None | SRR1791908 | Other | La1.8.1 | None | SRR7236181 | Other | La1.8.1 | None | SRR13861374 | Other | lineage4.9 | None | SRR6982043 | Sensitive | lineage4.4.1.1 | None | SRR13861174 | Other | lineage4.9 | None | ERR6337385 | Other | La1.2 | None | SRR13861440 | Other | lineage4.9 | None | SRR13861423 | Other | lineage4.9 | None | SRR13861449 | Other | lineage4.9 | None | SRR13861646 | Other | lineage4.9 | None | SRR13861566 | Other | lineage4.9 | None | SRR13861201 | Other | lineage4.9 | None | SRR13861390 | Other | lineage4.9 | None | SRR2101662 | Sensitive | lineage4.3.3 | None | SRR13861522 | Other | lineage4.9 | None | SRR13861510 | Other | lineage4.9 | None | SRR13861384 | Other | lineage4.9 | None | SRR13861592 | Other | lineage4.9 | None | SRR13861499 | Other | lineage4.9 | None | SRR6982205 | Sensitive | lineage1.2.2.1 | None | SRR13861476 | Other | lineage4.9 | None | SRR13861727 | Other | lineage4.9 | None | SRR13861465 | Other | lineage4.9 | None | SRR13861459 | HR-TB | lineage4.9 | None | SRR13861613 | Other | lineage4.9 | None | SRR13861340 | Other | lineage4.9 | None | SRR13861673 | Other | lineage4.9 | None | SRR13861373 | Other | lineage4.9 | None | SRR13861192 | Other | lineage4.9 | None | SRR13861309 | Other | lineage4.9 | None | SRR13861710 | Other | lineage4.9 | None | SRR13861453 | Other | lineage4.9 | None | SRR7240067 | Other | La1.8.1 | None | SRR13861353 | Other | lineage4.9 | None | SRR11349188 | MDR-TB | lineage4.1.2.1 | None | SRR11972311 | Other | lineage2.2.1;lineage4 | None | SRR13861530 | Other | lineage4.9 | None | SRR13861156 | Other | lineage4.9 | None | SRR13861608 | Other | lineage4.9 | None | SRR13861569 | Other | lineage4.9 | None | SRR13861464 | Other | lineage4.9 | None | SRR13861533 | Other | lineage4.9 | None | SRR6982558 | Sensitive | lineage4.3.4.2.1 | None | SRR21685367 | MDR-TB | lineage2.2.1 | None | SRR13861683 | Other | lineage4.9 | None | SRR6896178 | Sensitive | lineage2.2.1 | None | SRR13861294 | Other | lineage4.9 | None | SRR13861274 | Other | lineage4.9 | None | SRR13861142 | Other | lineage4.9 | None | SRR13861375 | Other | lineage4.9 | None | SRR10869293 | Pre-XDR-TB | lineage2.2.1 | None | SRR13861535 | Other | lineage4.9 | None | SRR13861514 | Other | lineage4.9 | None | SRR16278292 | Other | La1.4 | None | SRR13861417 | HR-TB | lineage4.9 | None | SRR13861486 | Other | lineage4.9 | None | SRR2101312 | MDR-TB | lineage2.2.1 | None |
|---|
