Run ID: SRR13861370
Sample name:
Date: 03-04-2023 09:30:06
Number of reads: 1111562
Percentage reads mapped: 55.63
Strain: lineage4.9
Drug-resistance: Other
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.9 | Euro-American (H37Rv-like) | T1 | None | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrB | 5850 | c.611_612insA | frameshift_variant | 1.0 |
rpoB | 762083 | c.2277T>A | synonymous_variant | 1.0 |
rpoC | 766578 | p.Asp1070Val | missense_variant | 1.0 |
mmpL5 | 776436 | p.Ala682Gly | missense_variant | 1.0 |
fbiC | 1303756 | c.827dupC | frameshift_variant | 1.0 |
fbiC | 1304155 | p.Arg409Gly | missense_variant | 1.0 |
atpE | 1460879 | c.-166C>A | upstream_gene_variant | 1.0 |
rrs | 1472112 | n.267C>T | non_coding_transcript_exon_variant | 0.12 |
rrs | 1472122 | n.277G>A | non_coding_transcript_exon_variant | 0.14 |
rrs | 1472127 | n.282C>T | non_coding_transcript_exon_variant | 0.16 |
rrs | 1472129 | n.284G>C | non_coding_transcript_exon_variant | 0.15 |
rrs | 1472137 | n.292G>A | non_coding_transcript_exon_variant | 0.17 |
rrs | 1472150 | n.305T>A | non_coding_transcript_exon_variant | 0.17 |
rrs | 1472151 | n.306C>T | non_coding_transcript_exon_variant | 0.16 |
rrs | 1472164 | n.319G>A | non_coding_transcript_exon_variant | 0.16 |
rrs | 1472172 | n.327T>C | non_coding_transcript_exon_variant | 0.17 |
rrs | 1472177 | n.332C>T | non_coding_transcript_exon_variant | 0.17 |
rrs | 1472203 | n.358G>A | non_coding_transcript_exon_variant | 0.16 |
rrs | 1472210 | n.365A>C | non_coding_transcript_exon_variant | 0.16 |
rrs | 1472213 | n.368G>C | non_coding_transcript_exon_variant | 0.16 |
rrs | 1472215 | n.370A>G | non_coding_transcript_exon_variant | 0.16 |
rrs | 1472225 | n.380C>A | non_coding_transcript_exon_variant | 0.16 |
rrs | 1472234 | n.389T>C | non_coding_transcript_exon_variant | 0.16 |
rrs | 1472236 | n.391C>G | non_coding_transcript_exon_variant | 0.16 |
rrs | 1472240 | n.395G>A | non_coding_transcript_exon_variant | 0.16 |
rrs | 1472251 | n.406G>A | non_coding_transcript_exon_variant | 0.11 |
rrs | 1472253 | n.408G>T | non_coding_transcript_exon_variant | 0.11 |
rrs | 1472614 | n.769G>T | non_coding_transcript_exon_variant | 0.14 |
rrs | 1472616 | n.771G>A | non_coding_transcript_exon_variant | 0.17 |
rrs | 1472655 | n.810G>A | non_coding_transcript_exon_variant | 0.17 |
rrs | 1472658 | n.813G>A | non_coding_transcript_exon_variant | 0.17 |
rrs | 1472661 | n.816A>G | non_coding_transcript_exon_variant | 0.17 |
rrs | 1472665 | n.820G>A | non_coding_transcript_exon_variant | 0.17 |
rrs | 1472669 | n.824_825insTAGG | non_coding_transcript_exon_variant | 0.16 |
rrs | 1472695 | n.850C>T | non_coding_transcript_exon_variant | 0.16 |
rrs | 1472697 | n.852T>C | non_coding_transcript_exon_variant | 0.16 |
rrs | 1472713 | n.868T>C | non_coding_transcript_exon_variant | 0.18 |
rrs | 1472716 | n.871C>T | non_coding_transcript_exon_variant | 0.17 |
rrs | 1472742 | n.897C>T | non_coding_transcript_exon_variant | 0.17 |
rrs | 1472744 | n.899A>G | non_coding_transcript_exon_variant | 0.19 |
rrl | 1476225 | n.2568T>G | non_coding_transcript_exon_variant | 0.16 |
rrl | 1476229 | n.2572C>T | non_coding_transcript_exon_variant | 0.19 |
rrl | 1476251 | n.2594T>C | non_coding_transcript_exon_variant | 0.23 |
rrl | 1476260 | n.2603A>G | non_coding_transcript_exon_variant | 0.24 |
rrl | 1476268 | n.2611A>T | non_coding_transcript_exon_variant | 0.24 |
rrl | 1476275 | n.2618T>A | non_coding_transcript_exon_variant | 0.23 |
rrl | 1476279 | n.2622G>A | non_coding_transcript_exon_variant | 0.24 |
rrl | 1476280 | n.2623A>C | non_coding_transcript_exon_variant | 0.24 |
rrl | 1476293 | n.2636C>T | non_coding_transcript_exon_variant | 0.23 |
rrl | 1476294 | n.2637A>G | non_coding_transcript_exon_variant | 0.23 |
rrl | 1476295 | n.2638C>G | non_coding_transcript_exon_variant | 0.23 |
rrl | 1476296 | n.2639C>T | non_coding_transcript_exon_variant | 0.23 |
rrl | 1476297 | n.2640C>T | non_coding_transcript_exon_variant | 0.22 |
rrl | 1476301 | n.2644A>C | non_coding_transcript_exon_variant | 0.22 |
rrl | 1476302 | n.2645G>A | non_coding_transcript_exon_variant | 0.22 |
rrl | 1476311 | n.2654G>C | non_coding_transcript_exon_variant | 0.25 |
rrl | 1476312 | n.2655T>C | non_coding_transcript_exon_variant | 0.25 |
rrl | 1476313 | n.2656G>A | non_coding_transcript_exon_variant | 0.27 |
rrl | 1476332 | n.2675G>C | non_coding_transcript_exon_variant | 0.4 |
rrl | 1476353 | n.2696G>T | non_coding_transcript_exon_variant | 0.51 |
rrl | 1476358 | n.2701T>C | non_coding_transcript_exon_variant | 0.58 |
rrl | 1476369 | n.2712C>T | non_coding_transcript_exon_variant | 0.58 |
rrl | 1476372 | n.2715T>C | non_coding_transcript_exon_variant | 0.5 |
rrl | 1476382 | n.2725A>G | non_coding_transcript_exon_variant | 0.53 |
rrl | 1476383 | n.2726T>A | non_coding_transcript_exon_variant | 0.38 |
rrl | 1476408 | n.2751G>A | non_coding_transcript_exon_variant | 0.51 |
rrl | 1476425 | n.2768G>T | non_coding_transcript_exon_variant | 0.51 |
rrl | 1476428 | n.2771C>T | non_coding_transcript_exon_variant | 0.48 |
rrl | 1476429 | n.2772A>C | non_coding_transcript_exon_variant | 0.54 |
rrl | 1476466 | n.2809C>T | non_coding_transcript_exon_variant | 0.54 |
rrl | 1476481 | n.2824T>C | non_coding_transcript_exon_variant | 0.44 |
rrl | 1476506 | n.2849T>C | non_coding_transcript_exon_variant | 0.3 |
rrl | 1476514 | n.2857C>T | non_coding_transcript_exon_variant | 0.21 |
rrl | 1476517 | n.2860C>T | non_coding_transcript_exon_variant | 0.2 |
rrl | 1476519 | n.2862C>G | non_coding_transcript_exon_variant | 0.2 |
rrl | 1476524 | n.2867C>A | non_coding_transcript_exon_variant | 0.21 |
rrl | 1476525 | n.2868A>G | non_coding_transcript_exon_variant | 0.21 |
rrl | 1476530 | n.2873C>T | non_coding_transcript_exon_variant | 0.23 |
rrl | 1476536 | n.2879G>A | non_coding_transcript_exon_variant | 0.24 |
rrl | 1476537 | n.2880A>G | non_coding_transcript_exon_variant | 0.24 |
rrl | 1476538 | n.2881A>G | non_coding_transcript_exon_variant | 0.23 |
rrl | 1476540 | n.2883C>G | non_coding_transcript_exon_variant | 0.23 |
rrl | 1476547 | n.2890C>T | non_coding_transcript_exon_variant | 0.24 |
rrl | 1476567 | n.2910C>T | non_coding_transcript_exon_variant | 0.23 |
rrl | 1476572 | n.2915G>A | non_coding_transcript_exon_variant | 0.21 |
rrl | 1476573 | n.2916A>T | non_coding_transcript_exon_variant | 0.21 |
rrl | 1476584 | n.2927C>T | non_coding_transcript_exon_variant | 0.18 |
ndh | 2102784 | p.Gly87Ser | missense_variant | 1.0 |
pncA | 2290201 | c.-960G>A | upstream_gene_variant | 1.0 |
kasA | 2518058 | c.-57G>A | upstream_gene_variant | 1.0 |
eis | 2714947 | p.Phe129Ser | missense_variant | 1.0 |
pepQ | 2860319 | p.Ser34Thr | missense_variant | 1.0 |
Rv2752c | 3064817 | p.Asp459Tyr | missense_variant | 1.0 |
whiB7 | 3568660 | p.Pro7Leu | missense_variant | 1.0 |
alr | 3841536 | c.-117_-116insT | upstream_gene_variant | 1.0 |
ddn | 3986940 | p.Asp33His | missense_variant | 1.0 |
embB | 4246529 | p.Ser6Arg | missense_variant | 1.0 |