Run ID: SRR13861568
Sample name:
Date: 03-04-2023 09:35:02
Number of reads: 107834
Percentage reads mapped: 10.79
Strain: lineage4.9
Drug-resistance: Other
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.9 | Euro-American (H37Rv-like) | T1 | None | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7532 | c.231T>C | synonymous_variant | 0.5 |
gyrA | 8820 | p.Asp507His | missense_variant | 1.0 |
mshA | 575967 | p.Val207Asp | missense_variant | 1.0 |
rpoB | 759961 | p.Thr52Asn | missense_variant | 1.0 |
rpoB | 762008 | c.2202C>G | synonymous_variant | 0.29 |
rpoB | 762014 | c.2208C>T | synonymous_variant | 0.29 |
rpoB | 762017 | c.2211A>G | synonymous_variant | 0.33 |
rpoB | 762027 | c.2221_2223delCTCinsTTG | synonymous_variant | 0.33 |
rpoB | 762032 | c.2226C>G | synonymous_variant | 0.33 |
rpoB | 762035 | c.2229G>C | synonymous_variant | 0.33 |
rpoB | 762053 | c.2247T>C | synonymous_variant | 0.33 |
rpoB | 762062 | c.2256T>C | synonymous_variant | 0.33 |
rpoB | 762065 | c.2259T>C | synonymous_variant | 0.33 |
rpoB | 762167 | c.2361T>C | synonymous_variant | 0.4 |
rpoB | 762176 | c.2370T>C | synonymous_variant | 0.4 |
rpoB | 762185 | c.2379G>C | synonymous_variant | 0.4 |
rpoB | 762218 | c.2412T>G | synonymous_variant | 0.4 |
rpoB | 762254 | c.2448T>C | synonymous_variant | 0.4 |
rpoB | 762266 | c.2460T>C | synonymous_variant | 0.4 |
rpoB | 762284 | c.2478G>C | synonymous_variant | 0.4 |
rpoC | 766483 | c.3114G>C | synonymous_variant | 0.29 |
rpoC | 766484 | p.Val1039Ile | missense_variant | 0.29 |
rpoC | 766492 | c.3123T>C | synonymous_variant | 0.29 |
rpoC | 766495 | c.3126C>T | synonymous_variant | 0.29 |
rpoC | 766543 | c.3174C>T | synonymous_variant | 0.33 |
rpoC | 766549 | c.3180G>C | synonymous_variant | 0.33 |
rpoC | 766573 | c.3204T>C | synonymous_variant | 0.33 |
rpoC | 766583 | p.Gly1072Ser | missense_variant | 0.29 |
rpoC | 766588 | c.3219G>A | synonymous_variant | 0.29 |
rpoC | 766591 | c.3222A>G | synonymous_variant | 0.29 |
rpoC | 766594 | c.3225G>C | synonymous_variant | 0.25 |
rpoC | 766607 | p.Ile1080Leu | missense_variant | 0.25 |
rpoC | 766900 | c.3531T>C | synonymous_variant | 0.5 |
mmpL5 | 775701 | p.Pro927Gln | missense_variant | 1.0 |
mmpL5 | 778828 | c.-348G>A | upstream_gene_variant | 1.0 |
rplC | 801353 | p.Val182Ala | missense_variant | 1.0 |
rrs | 1472101 | n.256G>A | non_coding_transcript_exon_variant | 0.5 |
rrs | 1472102 | n.257G>A | non_coding_transcript_exon_variant | 0.5 |
rrs | 1472106 | n.261G>A | non_coding_transcript_exon_variant | 0.71 |
rrs | 1472112 | n.267C>T | non_coding_transcript_exon_variant | 0.88 |
rrs | 1472122 | n.277G>A | non_coding_transcript_exon_variant | 0.68 |
rrs | 1472127 | n.282C>T | non_coding_transcript_exon_variant | 0.89 |
rrs | 1472129 | n.284G>C | non_coding_transcript_exon_variant | 0.89 |
rrs | 1472137 | n.292G>A | non_coding_transcript_exon_variant | 0.9 |
rrs | 1472150 | n.305T>A | non_coding_transcript_exon_variant | 0.9 |
rrs | 1472151 | n.306C>T | non_coding_transcript_exon_variant | 0.9 |
rrs | 1472164 | n.319G>A | non_coding_transcript_exon_variant | 0.95 |
rrs | 1472172 | n.327T>C | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472177 | n.332C>T | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472203 | n.358G>A | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472210 | n.365A>C | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472213 | n.368G>C | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472215 | n.370A>G | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472225 | n.380C>A | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472230 | n.385C>T | non_coding_transcript_exon_variant | 0.26 |
rrs | 1472234 | n.389T>C | non_coding_transcript_exon_variant | 0.95 |
rrs | 1472236 | n.391C>G | non_coding_transcript_exon_variant | 0.95 |
rrs | 1472240 | n.395G>A | non_coding_transcript_exon_variant | 0.95 |
rrs | 1472251 | n.406G>A | non_coding_transcript_exon_variant | 0.93 |
rrs | 1472253 | n.408G>T | non_coding_transcript_exon_variant | 0.92 |
rrs | 1472259 | n.414C>A | non_coding_transcript_exon_variant | 0.88 |
rrs | 1472262 | n.417C>T | non_coding_transcript_exon_variant | 0.8 |
rrs | 1472505 | n.660G>A | non_coding_transcript_exon_variant | 0.4 |
rrs | 1472507 | n.662C>G | non_coding_transcript_exon_variant | 0.67 |
rrs | 1472517 | n.672T>A | non_coding_transcript_exon_variant | 0.86 |
rrs | 1472518 | n.673G>T | non_coding_transcript_exon_variant | 0.86 |
rrs | 1472530 | n.685G>A | non_coding_transcript_exon_variant | 0.86 |
rrs | 1472541 | n.696T>G | non_coding_transcript_exon_variant | 0.86 |
rrs | 1472544 | n.699C>A | non_coding_transcript_exon_variant | 0.83 |
rrs | 1472545 | n.700A>T | non_coding_transcript_exon_variant | 0.83 |
rrs | 1472557 | n.712G>A | non_coding_transcript_exon_variant | 0.86 |
rrs | 1472570 | n.725G>A | non_coding_transcript_exon_variant | 0.87 |
rrs | 1472571 | n.726G>C | non_coding_transcript_exon_variant | 0.87 |
rrs | 1472573 | n.728C>T | non_coding_transcript_exon_variant | 0.87 |
rrs | 1472579 | n.734G>T | non_coding_transcript_exon_variant | 0.87 |
rrs | 1472581 | n.736A>T | non_coding_transcript_exon_variant | 0.87 |
rrs | 1472596 | n.751G>T | non_coding_transcript_exon_variant | 0.87 |
rrs | 1472598 | n.753A>T | non_coding_transcript_exon_variant | 0.87 |
rrs | 1472614 | n.769G>T | non_coding_transcript_exon_variant | 0.91 |
rrs | 1472616 | n.771G>A | non_coding_transcript_exon_variant | 0.92 |
rrs | 1472655 | n.810G>A | non_coding_transcript_exon_variant | 0.91 |
rrs | 1472658 | n.813G>A | non_coding_transcript_exon_variant | 0.89 |
rrs | 1472661 | n.816A>G | non_coding_transcript_exon_variant | 0.88 |
rrs | 1472665 | n.820G>A | non_coding_transcript_exon_variant | 0.91 |
rrs | 1472669 | n.824_825insTAGG | non_coding_transcript_exon_variant | 0.91 |
rrs | 1472695 | n.850C>T | non_coding_transcript_exon_variant | 0.94 |
rrs | 1472697 | n.852T>C | non_coding_transcript_exon_variant | 0.91 |
rrs | 1472713 | n.868T>C | non_coding_transcript_exon_variant | 0.94 |
rrs | 1472716 | n.871C>T | non_coding_transcript_exon_variant | 0.94 |
rrs | 1472742 | n.897C>T | non_coding_transcript_exon_variant | 0.94 |
rrs | 1472744 | n.899A>G | non_coding_transcript_exon_variant | 0.94 |
rrs | 1472767 | n.922G>A | non_coding_transcript_exon_variant | 0.85 |
rrs | 1473226 | n.1381C>T | non_coding_transcript_exon_variant | 0.54 |
rrs | 1473248 | n.1403G>A | non_coding_transcript_exon_variant | 0.62 |
rrs | 1473249 | n.1404T>C | non_coding_transcript_exon_variant | 0.57 |
rrs | 1473252 | n.1407T>C | non_coding_transcript_exon_variant | 0.57 |
rrs | 1473255 | n.1410A>G | non_coding_transcript_exon_variant | 0.57 |
rrs | 1473259 | n.1414C>T | non_coding_transcript_exon_variant | 0.57 |
rrs | 1473260 | n.1415G>T | non_coding_transcript_exon_variant | 0.57 |
rrs | 1473276 | n.1431A>G | non_coding_transcript_exon_variant | 0.54 |
rrs | 1473281 | n.1436C>A | non_coding_transcript_exon_variant | 0.54 |
rrs | 1473282 | n.1437C>G | non_coding_transcript_exon_variant | 0.5 |
rrs | 1473288 | n.1443C>A | non_coding_transcript_exon_variant | 0.5 |
rrs | 1473290 | n.1445C>T | non_coding_transcript_exon_variant | 0.5 |
rrs | 1473291 | n.1446G>T | non_coding_transcript_exon_variant | 0.43 |
rrs | 1473296 | n.1451G>C | non_coding_transcript_exon_variant | 0.5 |
rrs | 1473297 | n.1452G>T | non_coding_transcript_exon_variant | 0.5 |
rrs | 1473301 | n.1456T>C | non_coding_transcript_exon_variant | 0.46 |
rrs | 1473327 | n.1482A>G | non_coding_transcript_exon_variant | 0.5 |
rrs | 1473328 | n.1483C>T | non_coding_transcript_exon_variant | 0.5 |
rrs | 1473352 | n.1507C>T | non_coding_transcript_exon_variant | 0.5 |
rrl | 1476225 | n.2568T>G | non_coding_transcript_exon_variant | 0.62 |
rrl | 1476229 | n.2572C>T | non_coding_transcript_exon_variant | 0.71 |
rrl | 1476251 | n.2594T>C | non_coding_transcript_exon_variant | 0.82 |
rrl | 1476260 | n.2603A>G | non_coding_transcript_exon_variant | 0.79 |
rrl | 1476263 | n.2606C>T | non_coding_transcript_exon_variant | 0.21 |
rrl | 1476268 | n.2611A>T | non_coding_transcript_exon_variant | 0.79 |
rrl | 1476275 | n.2618T>A | non_coding_transcript_exon_variant | 0.82 |
rrl | 1476279 | n.2622G>A | non_coding_transcript_exon_variant | 0.82 |
rrl | 1476280 | n.2623A>C | non_coding_transcript_exon_variant | 0.82 |
rrl | 1476293 | n.2636C>T | non_coding_transcript_exon_variant | 0.79 |
rrl | 1476294 | n.2637A>G | non_coding_transcript_exon_variant | 0.81 |
rrl | 1476295 | n.2638C>G | non_coding_transcript_exon_variant | 0.81 |
rrl | 1476296 | n.2639C>T | non_coding_transcript_exon_variant | 0.81 |
rrl | 1476297 | n.2640C>T | non_coding_transcript_exon_variant | 0.78 |
rrl | 1476301 | n.2644A>C | non_coding_transcript_exon_variant | 0.81 |
rrl | 1476302 | n.2645G>A | non_coding_transcript_exon_variant | 0.81 |
rrl | 1476311 | n.2654G>C | non_coding_transcript_exon_variant | 0.85 |
rrl | 1476312 | n.2655T>C | non_coding_transcript_exon_variant | 0.85 |
rrl | 1476313 | n.2656G>A | non_coding_transcript_exon_variant | 0.86 |
rrl | 1476332 | n.2675G>C | non_coding_transcript_exon_variant | 0.9 |
rrl | 1476353 | n.2696G>T | non_coding_transcript_exon_variant | 0.96 |
rrl | 1476358 | n.2701T>C | non_coding_transcript_exon_variant | 0.96 |
rrl | 1476369 | n.2712C>T | non_coding_transcript_exon_variant | 0.97 |
rrl | 1476372 | n.2715T>C | non_coding_transcript_exon_variant | 0.97 |
rrl | 1476382 | n.2725A>G | non_coding_transcript_exon_variant | 0.97 |
rrl | 1476383 | n.2726T>A | non_coding_transcript_exon_variant | 0.73 |
rrl | 1476408 | n.2751G>A | non_coding_transcript_exon_variant | 0.96 |
rrl | 1476425 | n.2768G>T | non_coding_transcript_exon_variant | 0.97 |
rrl | 1476428 | n.2771C>T | non_coding_transcript_exon_variant | 0.97 |
rrl | 1476429 | n.2772A>C | non_coding_transcript_exon_variant | 0.97 |
rrl | 1476466 | n.2809C>T | non_coding_transcript_exon_variant | 0.97 |
rrl | 1476481 | n.2824T>C | non_coding_transcript_exon_variant | 0.96 |
rrl | 1476506 | n.2849T>C | non_coding_transcript_exon_variant | 0.93 |
rrl | 1476514 | n.2857C>T | non_coding_transcript_exon_variant | 0.91 |
rrl | 1476517 | n.2860C>T | non_coding_transcript_exon_variant | 0.9 |
rrl | 1476519 | n.2862C>G | non_coding_transcript_exon_variant | 0.9 |
rrl | 1476524 | n.2867C>A | non_coding_transcript_exon_variant | 0.9 |
rrl | 1476525 | n.2868A>G | non_coding_transcript_exon_variant | 0.9 |
rrl | 1476530 | n.2873C>T | non_coding_transcript_exon_variant | 0.9 |
rrl | 1476536 | n.2879G>A | non_coding_transcript_exon_variant | 0.92 |
rrl | 1476537 | n.2880A>G | non_coding_transcript_exon_variant | 0.92 |
rrl | 1476538 | n.2881A>G | non_coding_transcript_exon_variant | 0.92 |
rrl | 1476540 | n.2883C>G | non_coding_transcript_exon_variant | 0.92 |
rrl | 1476547 | n.2890C>T | non_coding_transcript_exon_variant | 0.92 |
rrl | 1476567 | n.2910C>T | non_coding_transcript_exon_variant | 0.88 |
rrl | 1476572 | n.2915G>A | non_coding_transcript_exon_variant | 0.9 |
rrl | 1476573 | n.2916A>T | non_coding_transcript_exon_variant | 0.9 |
rrl | 1476584 | n.2927C>T | non_coding_transcript_exon_variant | 0.88 |
rrl | 1476595 | n.2938C>G | non_coding_transcript_exon_variant | 0.5 |
rpsA | 1834175 | p.Arg212* | stop_gained | 1.0 |
rpsA | 1834366 | c.825A>G | synonymous_variant | 0.2 |
rpsA | 1834375 | c.834G>A | synonymous_variant | 0.2 |
Rv1979c | 2222085 | c.1080G>C | synonymous_variant | 1.0 |
folC | 2746135 | c.1464A>C | stop_lost&splice_region_variant | 1.0 |
ald | 3087218 | p.Met133Ile | missense_variant | 1.0 |
clpC1 | 4038596 | c.2109A>G | synonymous_variant | 0.33 |
clpC1 | 4039145 | c.1560G>C | synonymous_variant | 0.25 |
clpC1 | 4040066 | c.639G>T | synonymous_variant | 1.0 |
embC | 4241259 | c.1397_1398insT | frameshift_variant | 1.0 |
embA | 4243358 | c.126C>T | synonymous_variant | 1.0 |
embA | 4243469 | c.237C>T | synonymous_variant | 1.0 |
embB | 4248085 | c.1572T>C | synonymous_variant | 0.18 |
embB | 4248097 | c.1584C>G | synonymous_variant | 0.2 |
embB | 4248206 | p.Ser565Gly | missense_variant | 0.2 |
embB | 4248220 | c.1707A>G | synonymous_variant | 0.22 |
embB | 4248436 | c.1923C>T | synonymous_variant | 1.0 |