Run ID: SRR13861374
Sample name:
Date: 03-04-2023 09:30:13
Number of reads: 804381
Percentage reads mapped: 40.26
Strain: lineage4.9
Drug-resistance: Other
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.9 | Euro-American (H37Rv-like) | T1 | None | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|---|---|---|---|---|
rrs | 1472733 | n.888G>A | non_coding_transcript_exon_variant | 0.52 | streptomycin |
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrB | 5624 | p.Asn129Asp | missense_variant | 1.0 |
mshA | 575194 | c.-154G>T | upstream_gene_variant | 1.0 |
rpoB | 760907 | c.1101_1102insT | frameshift_variant | 1.0 |
rplC | 801226 | p.Gly140Arg | missense_variant | 1.0 |
embR | 1417503 | c.-156A>C | upstream_gene_variant | 1.0 |
rrs | 1472101 | n.256G>A | non_coding_transcript_exon_variant | 0.15 |
rrs | 1472102 | n.257G>A | non_coding_transcript_exon_variant | 0.15 |
rrs | 1472106 | n.261G>A | non_coding_transcript_exon_variant | 0.31 |
rrs | 1472112 | n.267C>T | non_coding_transcript_exon_variant | 0.48 |
rrs | 1472122 | n.277G>A | non_coding_transcript_exon_variant | 0.45 |
rrs | 1472127 | n.282C>T | non_coding_transcript_exon_variant | 0.53 |
rrs | 1472129 | n.284G>C | non_coding_transcript_exon_variant | 0.54 |
rrs | 1472137 | n.292G>A | non_coding_transcript_exon_variant | 0.55 |
rrs | 1472150 | n.305T>A | non_coding_transcript_exon_variant | 0.53 |
rrs | 1472151 | n.306C>T | non_coding_transcript_exon_variant | 0.53 |
rrs | 1472164 | n.319G>A | non_coding_transcript_exon_variant | 0.54 |
rrs | 1472172 | n.327T>C | non_coding_transcript_exon_variant | 0.54 |
rrs | 1472177 | n.332C>T | non_coding_transcript_exon_variant | 0.54 |
rrs | 1472203 | n.358G>A | non_coding_transcript_exon_variant | 0.49 |
rrs | 1472210 | n.365A>C | non_coding_transcript_exon_variant | 0.47 |
rrs | 1472213 | n.368G>C | non_coding_transcript_exon_variant | 0.47 |
rrs | 1472215 | n.370A>G | non_coding_transcript_exon_variant | 0.47 |
rrs | 1472225 | n.380C>A | non_coding_transcript_exon_variant | 0.49 |
rrs | 1472230 | n.385C>T | non_coding_transcript_exon_variant | 0.26 |
rrs | 1472234 | n.389T>C | non_coding_transcript_exon_variant | 0.48 |
rrs | 1472236 | n.391C>G | non_coding_transcript_exon_variant | 0.48 |
rrs | 1472240 | n.395G>A | non_coding_transcript_exon_variant | 0.48 |
rrs | 1472251 | n.406G>A | non_coding_transcript_exon_variant | 0.35 |
rrs | 1472253 | n.408G>T | non_coding_transcript_exon_variant | 0.31 |
rrs | 1472259 | n.414C>A | non_coding_transcript_exon_variant | 0.23 |
rrs | 1472262 | n.417C>T | non_coding_transcript_exon_variant | 0.21 |
rrs | 1472507 | n.662C>G | non_coding_transcript_exon_variant | 0.23 |
rrs | 1472517 | n.672T>A | non_coding_transcript_exon_variant | 0.52 |
rrs | 1472518 | n.673G>T | non_coding_transcript_exon_variant | 0.52 |
rrs | 1472530 | n.685G>A | non_coding_transcript_exon_variant | 0.52 |
rrs | 1472541 | n.696T>G | non_coding_transcript_exon_variant | 0.52 |
rrs | 1472544 | n.699C>A | non_coding_transcript_exon_variant | 0.53 |
rrs | 1472545 | n.700A>T | non_coding_transcript_exon_variant | 0.53 |
rrs | 1472557 | n.712G>A | non_coding_transcript_exon_variant | 0.54 |
rrs | 1472570 | n.725G>A | non_coding_transcript_exon_variant | 0.51 |
rrs | 1472571 | n.726G>C | non_coding_transcript_exon_variant | 0.52 |
rrs | 1472573 | n.728C>T | non_coding_transcript_exon_variant | 0.52 |
rrs | 1472579 | n.734G>T | non_coding_transcript_exon_variant | 0.51 |
rrs | 1472581 | n.736A>T | non_coding_transcript_exon_variant | 0.5 |
rrs | 1472596 | n.751G>T | non_coding_transcript_exon_variant | 0.48 |
rrs | 1472598 | n.753A>T | non_coding_transcript_exon_variant | 0.48 |
rrs | 1472614 | n.769G>T | non_coding_transcript_exon_variant | 0.57 |
rrs | 1472616 | n.771G>A | non_coding_transcript_exon_variant | 0.59 |
rrs | 1472655 | n.810G>A | non_coding_transcript_exon_variant | 0.58 |
rrs | 1472658 | n.813G>A | non_coding_transcript_exon_variant | 0.53 |
rrs | 1472661 | n.816A>G | non_coding_transcript_exon_variant | 0.53 |
rrs | 1472665 | n.820G>A | non_coding_transcript_exon_variant | 0.54 |
rrs | 1472669 | n.824_825insTAGG | non_coding_transcript_exon_variant | 0.54 |
rrs | 1472695 | n.850C>T | non_coding_transcript_exon_variant | 0.54 |
rrs | 1472697 | n.852T>C | non_coding_transcript_exon_variant | 0.54 |
rrs | 1472713 | n.868T>C | non_coding_transcript_exon_variant | 0.51 |
rrs | 1472716 | n.871C>T | non_coding_transcript_exon_variant | 0.52 |
rrs | 1472742 | n.897C>T | non_coding_transcript_exon_variant | 0.53 |
rrs | 1472744 | n.899A>G | non_coding_transcript_exon_variant | 0.54 |
rrs | 1472767 | n.922G>A | non_coding_transcript_exon_variant | 0.3 |
rrs | 1473226 | n.1381C>T | non_coding_transcript_exon_variant | 0.16 |
rrs | 1473248 | n.1403G>A | non_coding_transcript_exon_variant | 0.16 |
rrs | 1473249 | n.1404T>C | non_coding_transcript_exon_variant | 0.16 |
rrs | 1473252 | n.1407T>C | non_coding_transcript_exon_variant | 0.17 |
rrs | 1473255 | n.1410A>G | non_coding_transcript_exon_variant | 0.16 |
rrs | 1473259 | n.1414C>T | non_coding_transcript_exon_variant | 0.15 |
rrs | 1473260 | n.1415G>T | non_coding_transcript_exon_variant | 0.15 |
rrs | 1473276 | n.1431A>G | non_coding_transcript_exon_variant | 0.15 |
rrl | 1476225 | n.2568T>G | non_coding_transcript_exon_variant | 0.4 |
rrl | 1476229 | n.2572C>T | non_coding_transcript_exon_variant | 0.46 |
rrl | 1476251 | n.2594T>C | non_coding_transcript_exon_variant | 0.52 |
rrl | 1476260 | n.2603A>G | non_coding_transcript_exon_variant | 0.53 |
rrl | 1476268 | n.2611A>T | non_coding_transcript_exon_variant | 0.5 |
rrl | 1476275 | n.2618T>A | non_coding_transcript_exon_variant | 0.52 |
rrl | 1476279 | n.2622G>A | non_coding_transcript_exon_variant | 0.52 |
rrl | 1476280 | n.2623A>C | non_coding_transcript_exon_variant | 0.52 |
rrl | 1476293 | n.2636C>T | non_coding_transcript_exon_variant | 0.56 |
rrl | 1476294 | n.2637A>G | non_coding_transcript_exon_variant | 0.56 |
rrl | 1476295 | n.2638C>G | non_coding_transcript_exon_variant | 0.56 |
rrl | 1476296 | n.2639C>T | non_coding_transcript_exon_variant | 0.56 |
rrl | 1476297 | n.2640C>T | non_coding_transcript_exon_variant | 0.56 |
rrl | 1476301 | n.2644A>C | non_coding_transcript_exon_variant | 0.56 |
rrl | 1476302 | n.2645G>A | non_coding_transcript_exon_variant | 0.54 |
rrl | 1476311 | n.2654G>C | non_coding_transcript_exon_variant | 0.55 |
rrl | 1476312 | n.2655T>C | non_coding_transcript_exon_variant | 0.54 |
rrl | 1476313 | n.2656G>A | non_coding_transcript_exon_variant | 0.56 |
rrl | 1476332 | n.2675G>C | non_coding_transcript_exon_variant | 0.74 |
rrl | 1476353 | n.2696G>T | non_coding_transcript_exon_variant | 0.82 |
rrl | 1476358 | n.2701T>C | non_coding_transcript_exon_variant | 0.83 |
rrl | 1476369 | n.2712C>T | non_coding_transcript_exon_variant | 0.83 |
rrl | 1476372 | n.2715T>C | non_coding_transcript_exon_variant | 0.84 |
rrl | 1476382 | n.2725A>G | non_coding_transcript_exon_variant | 0.83 |
rrl | 1476383 | n.2726T>A | non_coding_transcript_exon_variant | 0.61 |
rrl | 1476408 | n.2751G>A | non_coding_transcript_exon_variant | 0.82 |
rrl | 1476425 | n.2768G>T | non_coding_transcript_exon_variant | 0.82 |
rrl | 1476428 | n.2771C>T | non_coding_transcript_exon_variant | 0.82 |
rrl | 1476429 | n.2772A>C | non_coding_transcript_exon_variant | 0.82 |
rrl | 1476466 | n.2809C>T | non_coding_transcript_exon_variant | 0.82 |
rrl | 1476481 | n.2824T>C | non_coding_transcript_exon_variant | 0.77 |
rrl | 1476506 | n.2849T>C | non_coding_transcript_exon_variant | 0.67 |
rrl | 1476514 | n.2857C>T | non_coding_transcript_exon_variant | 0.58 |
rrl | 1476517 | n.2860C>T | non_coding_transcript_exon_variant | 0.55 |
rrl | 1476519 | n.2862C>G | non_coding_transcript_exon_variant | 0.55 |
rrl | 1476524 | n.2867C>A | non_coding_transcript_exon_variant | 0.55 |
rrl | 1476525 | n.2868A>G | non_coding_transcript_exon_variant | 0.55 |
rrl | 1476530 | n.2873C>T | non_coding_transcript_exon_variant | 0.55 |
rrl | 1476536 | n.2879G>A | non_coding_transcript_exon_variant | 0.55 |
rrl | 1476537 | n.2880A>G | non_coding_transcript_exon_variant | 0.54 |
rrl | 1476538 | n.2881A>G | non_coding_transcript_exon_variant | 0.54 |
rrl | 1476540 | n.2883C>G | non_coding_transcript_exon_variant | 0.55 |
rrl | 1476547 | n.2890C>T | non_coding_transcript_exon_variant | 0.56 |
rrl | 1476567 | n.2910C>T | non_coding_transcript_exon_variant | 0.55 |
rrl | 1476572 | n.2915G>A | non_coding_transcript_exon_variant | 0.55 |
rrl | 1476573 | n.2916A>T | non_coding_transcript_exon_variant | 0.54 |
rrl | 1476584 | n.2927C>T | non_coding_transcript_exon_variant | 0.47 |
rrl | 1476753 | n.3099delG | non_coding_transcript_exon_variant | 1.0 |
fabG1 | 1673233 | c.-207T>G | upstream_gene_variant | 1.0 |
rpsA | 1833593 | c.53delC | frameshift_variant | 1.0 |
rpsA | 1834884 | p.Gln448Leu | missense_variant | 1.0 |
PPE35 | 2169282 | p.Arg444His | missense_variant | 1.0 |
ahpC | 2725932 | c.-261G>A | upstream_gene_variant | 1.0 |
pepQ | 2859739 | p.Ala227Gly | missense_variant | 1.0 |
pepQ | 2860197 | c.222T>C | synonymous_variant | 1.0 |
Rv3083 | 3448909 | p.Leu136Ile | missense_variant | 1.0 |
fbiA | 3640691 | p.Asp50Val | missense_variant | 1.0 |
fbiA | 3641204 | p.Gly221Asp | missense_variant | 1.0 |
clpC1 | 4039961 | p.Tyr248* | stop_gained | 1.0 |
embC | 4240818 | p.Thr319Arg | missense_variant | 1.0 |
embB | 4248081 | c.1569dupG | frameshift_variant | 1.0 |
ethA | 4327644 | c.-171G>A | upstream_gene_variant | 1.0 |