TB-Profiler result

Run: SRR13861428
Summary

Run ID: SRR13861428

Sample name:

Date: 03-04-2023 09:31:33

Number of reads: 341028

Percentage reads mapped: 8.53

Strain: lineage4.9

Drug-resistance: Other

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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
lineage4 Euro-American LAM;T;S;X;H None 1.0
lineage4.9 Euro-American (H37Rv-like) T1 None 1.0
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
rrs 1472733 n.888G>A non_coding_transcript_exon_variant 0.93 streptomycin
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
gyrB 5333 p.Met32Val missense_variant 1.0
gyrA 6388 c.-914T>C upstream_gene_variant 0.13
gyrA 6400 c.-902C>G upstream_gene_variant 0.13
gyrA 6403 c.-899T>C upstream_gene_variant 0.14
gyrA 8288 c.987T>C synonymous_variant 0.18
gyrA 8294 c.993T>C synonymous_variant 0.18
gyrA 8324 c.1023T>C synonymous_variant 0.18
gyrA 8342 c.1041G>C synonymous_variant 0.2
gyrA 8366 c.1065G>C synonymous_variant 0.15
gyrA 8375 c.1074G>C synonymous_variant 0.15
gyrA 8391 p.Tyr364His missense_variant 0.15
gyrA 8399 c.1098T>C synonymous_variant 0.15
gyrA 8420 c.1119T>C synonymous_variant 0.13
gyrA 8423 c.1122G>C synonymous_variant 0.14
mshA 575746 c.399C>G synonymous_variant 0.14
mshA 575771 p.Val142Ser missense_variant 0.14
mshA 575779 c.432A>G synonymous_variant 0.14
ccsA 620331 c.441C>T synonymous_variant 0.25
ccsA 620340 c.450C>G synonymous_variant 0.2
ccsA 620349 c.459A>G synonymous_variant 0.18
ccsA 620362 p.Ala158Thr missense_variant 0.17
ccsA 620367 c.477T>C synonymous_variant 0.17
ccsA 620373 c.483C>G synonymous_variant 0.15
ccsA 620509 p.Thr207Ser missense_variant 1.0
ccsA 620749 p.Trp287Arg missense_variant 1.0
rpoB 760337 c.531C>G synonymous_variant 0.22
rpoB 760340 c.534G>C synonymous_variant 0.2
rpoB 760670 c.864G>C synonymous_variant 0.21
rpoB 760674 c.868T>C synonymous_variant 0.21
rpoB 760679 c.873A>G synonymous_variant 0.23
rpoB 760683 c.877T>C synonymous_variant 0.23
rpoB 760718 c.912C>G synonymous_variant 0.21
rpoB 760721 c.915C>G synonymous_variant 0.23
rpoB 760724 c.918T>C synonymous_variant 0.25
rpoB 760730 c.924T>C synonymous_variant 0.27
rpoB 760751 c.945G>C synonymous_variant 0.22
rpoB 760757 c.951T>C synonymous_variant 0.2
rpoB 760759 p.Val318Ala missense_variant 0.2
rpoB 760763 c.957C>T synonymous_variant 0.18
rpoB 760769 c.963C>G synonymous_variant 0.17
rpoB 760775 c.969G>C synonymous_variant 0.17
rpoB 760776 c.970_972delTCGinsAGC synonymous_variant 0.17
rpoB 760793 c.987A>G synonymous_variant 0.2
rpoB 760805 c.999G>C synonymous_variant 0.27
rpoB 760830 c.1024T>C synonymous_variant 0.2
rpoB 760845 p.Thr347Pro missense_variant 0.17
rpoB 760859 c.1053T>C synonymous_variant 0.17
rpoB 760869 p.Val355Ile missense_variant 0.18
rpoB 760886 c.1080A>G synonymous_variant 0.17
rpoB 760919 c.1113C>G synonymous_variant 0.14
rpoB 760925 c.1119T>C synonymous_variant 0.13
rpoB 760934 c.1128C>T synonymous_variant 0.13
rpoC 762836 c.-534C>G upstream_gene_variant 0.15
rpoC 764131 c.762T>C synonymous_variant 0.2
rpoC 764161 c.792G>C synonymous_variant 0.3
rpoC 764188 c.819A>G synonymous_variant 0.25
rpoC 764195 p.Ser276Gln missense_variant 0.25
rpoC 764203 c.834G>T synonymous_variant 0.25
rpoC 764206 c.837T>C synonymous_variant 0.22
rpoC 764257 c.888G>C synonymous_variant 0.22
rpoC 764269 c.900G>C synonymous_variant 0.22
rpoC 765478 c.2109T>C synonymous_variant 0.14
rpoC 765499 c.2130C>G synonymous_variant 0.15
rpoC 765541 c.2172C>G synonymous_variant 0.15
rpoC 765553 c.2184C>T synonymous_variant 0.14
rpoC 765556 c.2187G>C synonymous_variant 0.14
rpoC 765559 c.2190G>C synonymous_variant 0.14
rpoC 765583 c.2214G>T synonymous_variant 0.14
rpoC 765613 p.His748Gln missense_variant 0.2
rpoC 765625 c.2256C>G synonymous_variant 0.27
rpoC 765628 c.2259G>C synonymous_variant 0.14
rpoC 765631 p.Asp754Glu missense_variant 0.14
rpoC 765658 c.2289C>T synonymous_variant 0.14
rpoC 766954 c.3586delG frameshift_variant 0.92
rpoC 767098 c.3729T>C synonymous_variant 0.17
rpoC 767119 c.3750A>G synonymous_variant 0.15
rpoC 767158 c.3789T>C synonymous_variant 0.17
rpoC 767167 c.3798C>G synonymous_variant 0.23
rpoC 767180 p.Ala1271Gln missense_variant 0.17
rpoC 767191 c.3822C>G synonymous_variant 0.17
rpoC 767206 c.3837C>G synonymous_variant 0.22
rpoC 767209 c.3840T>C synonymous_variant 0.2
rpoC 767212 c.3843G>C synonymous_variant 0.18
rpoC 767221 c.3852C>G synonymous_variant 0.18
mmpL5 776029 c.2452C>T synonymous_variant 0.2
mmpL5 776080 p.Ala801Pro missense_variant 0.89
mmpS5 779649 c.-744T>A upstream_gene_variant 1.0
rplC 800612 c.-197A>G upstream_gene_variant 0.22
rplC 800618 c.-191T>C upstream_gene_variant 0.25
rplC 801220 p.Ser138Gly missense_variant 0.91
fbiC 1303494 p.Leu188Phe missense_variant 1.0
rrs 1471923 n.78T>C non_coding_transcript_exon_variant 0.2
rrs 1471934 n.89A>G non_coding_transcript_exon_variant 0.22
rrs 1471969 n.124T>C non_coding_transcript_exon_variant 0.29
rrs 1471970 n.125G>A non_coding_transcript_exon_variant 0.29
rrs 1472044 n.199G>C non_coding_transcript_exon_variant 0.29
rrs 1472053 n.211_212delGC non_coding_transcript_exon_variant 0.29
rrs 1472061 n.216A>T non_coding_transcript_exon_variant 0.25
rrs 1472075 n.230A>G non_coding_transcript_exon_variant 0.25
rrs 1472094 n.249T>A non_coding_transcript_exon_variant 0.43
rrs 1472101 n.256G>A non_coding_transcript_exon_variant 0.65
rrs 1472102 n.257G>A non_coding_transcript_exon_variant 0.65
rrs 1472106 n.261G>A non_coding_transcript_exon_variant 0.77
rrs 1472112 n.267C>T non_coding_transcript_exon_variant 0.84
rrs 1472122 n.277G>A non_coding_transcript_exon_variant 0.72
rrs 1472127 n.282C>T non_coding_transcript_exon_variant 0.88
rrs 1472129 n.284G>C non_coding_transcript_exon_variant 0.88
rrs 1472137 n.292G>A non_coding_transcript_exon_variant 0.9
rrs 1472150 n.305T>A non_coding_transcript_exon_variant 0.9
rrs 1472151 n.306C>T non_coding_transcript_exon_variant 0.9
rrs 1472164 n.319G>A non_coding_transcript_exon_variant 0.92
rrs 1472172 n.327T>C non_coding_transcript_exon_variant 0.92
rrs 1472177 n.332C>T non_coding_transcript_exon_variant 0.91
rrs 1472203 n.358G>A non_coding_transcript_exon_variant 0.93
rrs 1472210 n.365A>C non_coding_transcript_exon_variant 0.93
rrs 1472213 n.368G>C non_coding_transcript_exon_variant 0.93
rrs 1472215 n.370A>G non_coding_transcript_exon_variant 0.93
rrs 1472225 n.380C>A non_coding_transcript_exon_variant 0.92
rrs 1472230 n.385C>T non_coding_transcript_exon_variant 0.36
rrs 1472234 n.389T>C non_coding_transcript_exon_variant 0.89
rrs 1472236 n.391C>G non_coding_transcript_exon_variant 0.9
rrs 1472240 n.395G>A non_coding_transcript_exon_variant 0.88
rrs 1472251 n.406G>A non_coding_transcript_exon_variant 0.85
rrs 1472253 n.408G>T non_coding_transcript_exon_variant 0.83
rrs 1472259 n.414C>A non_coding_transcript_exon_variant 0.74
rrs 1472262 n.417C>T non_coding_transcript_exon_variant 0.71
rrs 1472269 n.424G>A non_coding_transcript_exon_variant 0.53
rrs 1472271 n.426T>C non_coding_transcript_exon_variant 0.53
rrs 1472277 n.432C>A non_coding_transcript_exon_variant 0.33
rrs 1472505 n.660G>A non_coding_transcript_exon_variant 0.25
rrs 1472507 n.662C>G non_coding_transcript_exon_variant 0.53
rrs 1472517 n.672T>A non_coding_transcript_exon_variant 0.8
rrs 1472518 n.673G>T non_coding_transcript_exon_variant 0.8
rrs 1472530 n.685G>A non_coding_transcript_exon_variant 0.81
rrs 1472541 n.696T>G non_coding_transcript_exon_variant 0.84
rrs 1472544 n.699C>A non_coding_transcript_exon_variant 0.86
rrs 1472545 n.700A>T non_coding_transcript_exon_variant 0.86
rrs 1472557 n.712G>A non_coding_transcript_exon_variant 0.85
rrs 1472570 n.725G>A non_coding_transcript_exon_variant 0.83
rrs 1472571 n.726G>C non_coding_transcript_exon_variant 0.82
rrs 1472573 n.728C>T non_coding_transcript_exon_variant 0.83
rrs 1472579 n.734G>T non_coding_transcript_exon_variant 0.83
rrs 1472581 n.736A>T non_coding_transcript_exon_variant 0.82
rrs 1472596 n.751G>T non_coding_transcript_exon_variant 0.81
rrs 1472598 n.753A>T non_coding_transcript_exon_variant 0.81
rrs 1472614 n.769G>T non_coding_transcript_exon_variant 0.89
rrs 1472616 n.771G>A non_coding_transcript_exon_variant 0.89
rrs 1472655 n.810G>A non_coding_transcript_exon_variant 0.91
rrs 1472658 n.813G>A non_coding_transcript_exon_variant 0.9
rrs 1472661 n.816A>G non_coding_transcript_exon_variant 0.89
rrs 1472665 n.820G>A non_coding_transcript_exon_variant 0.89
rrs 1472669 n.824_825insTAGG non_coding_transcript_exon_variant 0.9
rrs 1472695 n.850C>T non_coding_transcript_exon_variant 0.9
rrs 1472697 n.852T>C non_coding_transcript_exon_variant 0.9
rrs 1472713 n.868T>C non_coding_transcript_exon_variant 0.91
rrs 1472716 n.871C>T non_coding_transcript_exon_variant 0.91
rrs 1472742 n.897C>T non_coding_transcript_exon_variant 0.92
rrs 1472744 n.899A>G non_coding_transcript_exon_variant 0.93
rrs 1472767 n.922G>A non_coding_transcript_exon_variant 0.81
rrs 1472781 n.936C>T non_coding_transcript_exon_variant 0.15
rrs 1472793 n.948A>T non_coding_transcript_exon_variant 0.23
rrs 1472803 n.958T>A non_coding_transcript_exon_variant 0.17
rrs 1473226 n.1381C>T non_coding_transcript_exon_variant 0.65
rrs 1473248 n.1403G>A non_coding_transcript_exon_variant 0.62
rrs 1473249 n.1404T>C non_coding_transcript_exon_variant 0.61
rrs 1473252 n.1407T>C non_coding_transcript_exon_variant 0.61
rrs 1473255 n.1410A>G non_coding_transcript_exon_variant 0.61
rrs 1473259 n.1414C>T non_coding_transcript_exon_variant 0.61
rrs 1473260 n.1415G>T non_coding_transcript_exon_variant 0.61
rrs 1473276 n.1431A>G non_coding_transcript_exon_variant 0.58
rrs 1473281 n.1436C>A non_coding_transcript_exon_variant 0.61
rrs 1473282 n.1437C>G non_coding_transcript_exon_variant 0.61
rrs 1473288 n.1443C>A non_coding_transcript_exon_variant 0.66
rrs 1473290 n.1445C>T non_coding_transcript_exon_variant 0.67
rrs 1473291 n.1446G>T non_coding_transcript_exon_variant 0.63
rrs 1473296 n.1451G>C non_coding_transcript_exon_variant 0.63
rrs 1473297 n.1452G>T non_coding_transcript_exon_variant 0.63
rrs 1473301 n.1456T>C non_coding_transcript_exon_variant 0.63
rrs 1473327 n.1482A>G non_coding_transcript_exon_variant 0.63
rrs 1473328 n.1483C>T non_coding_transcript_exon_variant 0.63
rrs 1473352 n.1507C>T non_coding_transcript_exon_variant 0.68
rrl 1474140 n.483C>T non_coding_transcript_exon_variant 0.17
rrl 1474904 n.1247G>A non_coding_transcript_exon_variant 0.21
rrl 1474991 n.1334T>C non_coding_transcript_exon_variant 0.15
rrl 1475006 n.1349A>T non_coding_transcript_exon_variant 0.21
rrl 1475015 n.1358C>T non_coding_transcript_exon_variant 0.2
rrl 1476215 n.2558C>A non_coding_transcript_exon_variant 0.42
rrl 1476225 n.2568T>G non_coding_transcript_exon_variant 0.91
rrl 1476229 n.2572C>T non_coding_transcript_exon_variant 0.91
rrl 1476251 n.2594T>C non_coding_transcript_exon_variant 0.93
rrl 1476260 n.2603A>G non_coding_transcript_exon_variant 0.93
rrl 1476263 n.2606C>T non_coding_transcript_exon_variant 0.16
rrl 1476268 n.2611A>T non_coding_transcript_exon_variant 0.93
rrl 1476275 n.2618T>A non_coding_transcript_exon_variant 0.92
rrl 1476279 n.2622G>A non_coding_transcript_exon_variant 0.92
rrl 1476280 n.2623A>C non_coding_transcript_exon_variant 0.92
rrl 1476293 n.2636C>T non_coding_transcript_exon_variant 0.91
rrl 1476294 n.2637A>G non_coding_transcript_exon_variant 0.93
rrl 1476295 n.2638C>G non_coding_transcript_exon_variant 0.93
rrl 1476296 n.2639C>T non_coding_transcript_exon_variant 0.93
rrl 1476297 n.2640C>T non_coding_transcript_exon_variant 0.93
rrl 1476301 n.2644A>C non_coding_transcript_exon_variant 0.92
rrl 1476302 n.2645G>A non_coding_transcript_exon_variant 0.93
rrl 1476311 n.2654G>C non_coding_transcript_exon_variant 0.94
rrl 1476312 n.2655T>C non_coding_transcript_exon_variant 0.94
rrl 1476313 n.2656G>A non_coding_transcript_exon_variant 0.94
rrl 1476332 n.2675G>C non_coding_transcript_exon_variant 0.97
rrl 1476353 n.2696G>T non_coding_transcript_exon_variant 0.98
rrl 1476358 n.2701T>C non_coding_transcript_exon_variant 0.98
rrl 1476369 n.2712C>T non_coding_transcript_exon_variant 0.98
rrl 1476372 n.2715T>C non_coding_transcript_exon_variant 0.98
rrl 1476382 n.2725A>G non_coding_transcript_exon_variant 0.98
rrl 1476383 n.2726T>A non_coding_transcript_exon_variant 0.79
rrl 1476408 n.2751G>A non_coding_transcript_exon_variant 0.98
rrl 1476425 n.2768G>T non_coding_transcript_exon_variant 0.98
rrl 1476428 n.2771C>T non_coding_transcript_exon_variant 0.98
rrl 1476429 n.2772A>C non_coding_transcript_exon_variant 0.98
rrl 1476466 n.2809C>T non_coding_transcript_exon_variant 0.98
rrl 1476481 n.2824T>C non_coding_transcript_exon_variant 0.97
rrl 1476506 n.2849T>C non_coding_transcript_exon_variant 0.93
rrl 1476514 n.2857C>T non_coding_transcript_exon_variant 0.89
rrl 1476517 n.2860C>T non_coding_transcript_exon_variant 0.88
rrl 1476519 n.2862C>G non_coding_transcript_exon_variant 0.88
rrl 1476524 n.2867C>A non_coding_transcript_exon_variant 0.89
rrl 1476525 n.2868A>G non_coding_transcript_exon_variant 0.89
rrl 1476530 n.2873C>T non_coding_transcript_exon_variant 0.88
rrl 1476536 n.2879G>A non_coding_transcript_exon_variant 0.88
rrl 1476537 n.2880A>G non_coding_transcript_exon_variant 0.88
rrl 1476538 n.2881A>G non_coding_transcript_exon_variant 0.88
rrl 1476540 n.2883C>G non_coding_transcript_exon_variant 0.88
rrl 1476547 n.2890C>T non_coding_transcript_exon_variant 0.89
rrl 1476567 n.2910C>T non_coding_transcript_exon_variant 0.9
rrl 1476572 n.2915G>A non_coding_transcript_exon_variant 0.89
rrl 1476573 n.2916A>T non_coding_transcript_exon_variant 0.89
rrl 1476584 n.2927C>T non_coding_transcript_exon_variant 0.89
rrl 1476595 n.2938C>G non_coding_transcript_exon_variant 0.58
rrl 1476596 n.2939C>T non_coding_transcript_exon_variant 0.41
fabG1 1673622 p.Asp61Glu missense_variant 1.0
fabG1 1673718 c.279_280insT frameshift_variant&stop_gained 0.9
rpsA 1833724 c.183C>G synonymous_variant 0.22
rpsA 1833727 c.186G>C synonymous_variant 0.22
rpsA 1833742 c.201A>G synonymous_variant 0.22
rpsA 1833745 c.204G>C synonymous_variant 0.22
rpsA 1833787 c.246C>G synonymous_variant 0.2
rpsA 1833790 c.249T>A synonymous_variant 0.2
rpsA 1833799 c.258C>G synonymous_variant 0.2
katG 2155998 p.Trp38Cys missense_variant 1.0
katG 2156285 c.-174T>G upstream_gene_variant 1.0
ahpC 2726085 c.-108G>A upstream_gene_variant 0.9
folC 2746308 p.Arg431Ser missense_variant 0.14
folC 2746321 c.1278A>C synonymous_variant 0.13
folC 2746328 p.Arg424Gln missense_variant 0.14
folC 2746335 p.Gly422Arg missense_variant 0.15
folC 2746336 c.1263C>G synonymous_variant 0.15
folC 2746345 c.1254G>C synonymous_variant 0.17
folC 2746351 p.Ala416Ser missense_variant 0.17
folC 2746360 c.1239T>C synonymous_variant 0.15
folC 2746375 c.1224G>C synonymous_variant 0.14
folC 2746390 c.1209G>C synonymous_variant 0.14
folC 2746393 c.1206C>G synonymous_variant 0.14
folC 2746396 c.1203C>G synonymous_variant 0.14
folC 2746402 p.Asp399His missense_variant 0.14
folC 2746416 p.Glu395Gln missense_variant 0.15
folC 2746420 c.1179A>G synonymous_variant 0.14
folC 2746438 c.1161G>C synonymous_variant 0.23
ribD 2987458 p.Val207Ala missense_variant 1.0
thyA 3073872 p.Ile200Val missense_variant 0.25
thyA 3073878 c.594G>A synonymous_variant 0.22
thyA 3073892 c.580T>C synonymous_variant 0.25
thyA 3073893 c.579C>G synonymous_variant 0.27
thyA 3073925 c.547T>C synonymous_variant 0.23
thyA 3073926 c.546G>C synonymous_variant 0.23
thyA 3073929 c.543T>C synonymous_variant 0.23
thyA 3073953 c.519T>C synonymous_variant 0.31
thyA 3073977 c.495A>G synonymous_variant 0.25
thyA 3073989 c.483T>C synonymous_variant 0.23
thyA 3074001 c.471C>G synonymous_variant 0.18
thyA 3074004 c.468T>C synonymous_variant 0.18
thyA 3074010 c.462C>G synonymous_variant 0.18
ald 3087895 p.Leu359Pro missense_variant 0.2
Rv3236c 3612721 c.395delT frameshift_variant 1.0
alr 3840445 p.Leu326Met missense_variant 1.0
alr 3841156 p.Leu89Val missense_variant 1.0
rpoA 3877966 p.Thr181Asn missense_variant 1.0
rpoA 3878046 c.462T>C synonymous_variant 0.2
rpoA 3878284 p.Glu75Ala missense_variant 0.17
rpoA 3878292 c.216T>C synonymous_variant 0.17
rpoA 3878298 c.210A>G synonymous_variant 0.17
rpoA 3878304 c.204G>C synonymous_variant 0.17
rpoA 3878313 c.195G>C synonymous_variant 0.15
rpoA 3878322 c.186A>G synonymous_variant 0.15
rpoA 3878331 c.177A>G synonymous_variant 0.14
rpoA 3878334 c.174T>C synonymous_variant 0.13
rpoA 3878337 c.171T>C synonymous_variant 0.13
rpoA 3878346 c.162T>C synonymous_variant 0.13
rpoA 3878364 c.144A>G synonymous_variant 0.17
rpoA 3878367 c.141C>G synonymous_variant 0.17
rpoA 3878370 c.138T>C synonymous_variant 0.17
rpoA 3878376 c.132G>C synonymous_variant 0.17
rpoA 3878385 c.123C>G synonymous_variant 0.18
rpoA 3878391 c.117T>C synonymous_variant 0.2
rpoA 3878396 c.112C>T synonymous_variant 0.2
clpC1 4038623 c.2082A>G synonymous_variant 0.2
clpC1 4038640 p.Asp689Asn missense_variant 0.17
clpC1 4038653 c.2052C>T synonymous_variant 0.17
clpC1 4038658 p.Lys683Gln missense_variant 0.17
clpC1 4038661 p.Ser682Thr missense_variant 0.17
clpC1 4038662 c.2043T>C synonymous_variant 0.16
clpC1 4038790 c.1915C>T synonymous_variant 0.14
clpC1 4038812 c.1893T>C synonymous_variant 0.17
clpC1 4038815 c.1890G>T synonymous_variant 0.17
clpC1 4038851 c.1854G>A synonymous_variant 0.17
clpC1 4038878 c.1827A>G synonymous_variant 0.18
clpC1 4038914 c.1791G>C synonymous_variant 0.17
clpC1 4038923 c.1782A>G synonymous_variant 0.18
clpC1 4038932 c.1773G>C synonymous_variant 0.3
clpC1 4038953 c.1752A>G synonymous_variant 0.2
clpC1 4038956 c.1749T>C synonymous_variant 0.18
clpC1 4038965 c.1740T>C synonymous_variant 0.18
clpC1 4038971 c.1734T>C synonymous_variant 0.18
clpC1 4038974 c.1731T>C synonymous_variant 0.2
clpC1 4038989 c.1716T>C synonymous_variant 0.2
clpC1 4038997 c.1708T>C synonymous_variant 0.25
clpC1 4039022 c.1683A>G synonymous_variant 0.22
clpC1 4039073 c.1632C>G synonymous_variant 0.22
clpC1 4040237 c.468C>T synonymous_variant 0.25
clpC1 4040249 c.456A>G synonymous_variant 0.22
clpC1 4040273 c.432T>C synonymous_variant 0.25
clpC1 4040354 c.351A>G synonymous_variant 0.2
clpC1 4040363 c.342A>C synonymous_variant 0.2
clpC1 4040369 c.336C>G synonymous_variant 0.2
clpC1 4040380 c.325T>C synonymous_variant 0.2
clpC1 4040381 c.324T>C synonymous_variant 0.2
clpC1 4040411 c.294T>C synonymous_variant 0.18
clpC1 4040423 c.282A>G synonymous_variant 0.2
clpC1 4040426 c.279T>C synonymous_variant 0.18
clpC1 4040431 c.274T>C synonymous_variant 0.18
clpC1 4040441 c.264C>G synonymous_variant 0.2
clpC1 4040444 c.261C>G synonymous_variant 0.18
clpC1 4040450 c.255A>G synonymous_variant 0.18
clpC1 4040459 c.246C>G synonymous_variant 0.18
clpC1 4040465 c.240T>C synonymous_variant 0.18
clpC1 4040471 c.234T>C synonymous_variant 0.18
clpC1 4040477 c.228G>A synonymous_variant 0.18
clpC1 4040480 c.225T>C synonymous_variant 0.18
panD 4044216 c.65_66insT frameshift_variant 1.0
embB 4247289 p.Ala259Gly missense_variant 1.0
embB 4249154 p.Gly881Arg missense_variant 1.0
ubiA 4270024 c.-191T>G upstream_gene_variant 1.0