Rv0001 - c.558G>T
Drug resistance types
15 Sensitive
3 RR-TB
8 HR-TB
1 MDR-TB
0 Pre-XDR-TB
0 XDR-TB
8 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.9 | 21 |
| lineage6.3.1 | 4 |
| lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | 1 |
| La1.6;La3;lineage4.6.4;lineage4.8.1;lineage4.9 | 1 |
| La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | 3 |
| lineage4.1.2 | 1 |
| La1.6;M.canetti;lineage4.8.1;lineage4.9;lineage6.3 | 1 |
| La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.9 | 1 |
| La1.6;La3;lineage4.6.4;lineage4.9 | 1 |
| La1.6;La3;M.canetti;lineage4.6.4;lineage4.9 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 35 |
Geographic prevalence
Country level data for this variant is available for 2 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR3797046 | HR-TB | lineage4.9 | None | SRR13861609 | Sensitive | lineage4.9 | None | SRR13837599 | Sensitive | lineage4.9 | None | SRR13837598 | Sensitive | lineage4.9 | None | ERR502528 | Sensitive | lineage6.3.1 | gh | SRR13861430 | Other | lineage4.9 | None | SRR13861511 | Sensitive | lineage4.9 | None | SRR13837601 | Sensitive | lineage4.9 | None | SRR13861428 | Other | lineage4.9 | None | ERR502533 | Sensitive | lineage6.3.1 | gh | SRR12416824 | HR-TB | lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | None | SRR13861403 | Other | lineage4.9 | None | ERR387051 | RR-TB | lineage4.9 | None | SRR13837490 | Sensitive | lineage4.9 | None | SRR3675234 | HR-TB | La1.6;La3;lineage4.6.4;lineage4.8.1;lineage4.9 | None | SRR13861638 | Sensitive | lineage4.9 | None | SRR13861431 | Other | lineage4.9 | None | ERR2693230 | HR-TB | La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | None | ERR4818347 | Other | lineage4.1.2 | None | SRR13861510 | Other | lineage4.9 | None | ERR3183991 | RR-TB | lineage6.3.1 | None | ERR841496 | RR-TB | lineage6.3.1 | None | SRR13837485 | Sensitive | lineage4.9 | None | SRR6046644 | MDR-TB | La1.6;M.canetti;lineage4.8.1;lineage4.9;lineage6.3 | None | ERR3797014 | HR-TB | La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | None | SRR13837709 | Sensitive | lineage4.9 | None | SRR13837486 | Sensitive | lineage4.9 | None | SRR13861429 | Other | lineage4.9 | None | SRR13861512 | Sensitive | lineage4.9 | None | ERR3797044 | Other | La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.9 | None | ERR3797017 | HR-TB | La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | None | ERR2693231 | HR-TB | La1.6;La3;lineage4.6.4;lineage4.9 | None | ERR3283024 | HR-TB | La1.6;La3;M.canetti;lineage4.6.4;lineage4.9 | None | SRR13837712 | Sensitive | lineage4.9 | None | SRR13861295 | Sensitive | lineage4.9 | None |
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