Run ID: SRR13861295
Sample name:
Date: 03-04-2023 09:28:17
Number of reads: 769630
Percentage reads mapped: 77.03
Strain: lineage4.9
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.9 | Euro-American (H37Rv-like) | T1 | None | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrB | 5333 | p.Met32Val | missense_variant | 1.0 |
ccsA | 620509 | p.Thr207Ser | missense_variant | 1.0 |
ccsA | 620749 | p.Trp287Arg | missense_variant | 1.0 |
rpoC | 766954 | c.3586delG | frameshift_variant | 1.0 |
mmpL5 | 776080 | p.Ala801Pro | missense_variant | 1.0 |
mmpS5 | 779649 | c.-744T>A | upstream_gene_variant | 1.0 |
rplC | 801220 | p.Ser138Gly | missense_variant | 1.0 |
fbiC | 1303494 | p.Leu188Phe | missense_variant | 1.0 |
rrl | 1476356 | n.2699C>A | non_coding_transcript_exon_variant | 0.12 |
rrl | 1476357 | n.2700T>C | non_coding_transcript_exon_variant | 0.12 |
rrl | 1476358 | n.2701T>C | non_coding_transcript_exon_variant | 0.12 |
rrl | 1476359 | n.2702C>G | non_coding_transcript_exon_variant | 0.12 |
rrl | 1476369 | n.2712C>T | non_coding_transcript_exon_variant | 0.18 |
rrl | 1476381 | n.2724G>C | non_coding_transcript_exon_variant | 0.19 |
rrl | 1476382 | n.2725A>G | non_coding_transcript_exon_variant | 0.19 |
rrl | 1476383 | n.2726T>G | non_coding_transcript_exon_variant | 0.18 |
rrl | 1476384 | n.2727G>T | non_coding_transcript_exon_variant | 0.19 |
rrl | 1476408 | n.2751G>A | non_coding_transcript_exon_variant | 0.16 |
rrl | 1476411 | n.2754G>A | non_coding_transcript_exon_variant | 0.16 |
rrl | 1476425 | n.2768G>A | non_coding_transcript_exon_variant | 0.17 |
rrl | 1476429 | n.2772A>C | non_coding_transcript_exon_variant | 0.16 |
rrl | 1476442 | n.2785T>A | non_coding_transcript_exon_variant | 0.16 |
rrl | 1476443 | n.2786G>T | non_coding_transcript_exon_variant | 0.15 |
rrl | 1476455 | n.2798C>A | non_coding_transcript_exon_variant | 0.14 |
rrl | 1476456 | n.2799A>T | non_coding_transcript_exon_variant | 0.15 |
rrl | 1476463 | n.2806C>T | non_coding_transcript_exon_variant | 0.14 |
rrl | 1476466 | n.2809C>T | non_coding_transcript_exon_variant | 0.15 |
rrl | 1476502 | n.2845G>C | non_coding_transcript_exon_variant | 0.93 |
fabG1 | 1673622 | p.Asp61Glu | missense_variant | 1.0 |
fabG1 | 1673718 | c.279_280insT | frameshift_variant&stop_gained | 1.0 |
katG | 2155998 | p.Trp38Cys | missense_variant | 1.0 |
katG | 2156285 | c.-174T>G | upstream_gene_variant | 1.0 |
ahpC | 2726085 | c.-108G>A | upstream_gene_variant | 1.0 |
ribD | 2987458 | p.Val207Ala | missense_variant | 1.0 |
Rv3236c | 3612721 | c.395delT | frameshift_variant | 1.0 |
alr | 3840445 | p.Leu326Met | missense_variant | 1.0 |
alr | 3841156 | p.Leu89Val | missense_variant | 1.0 |
rpoA | 3877966 | p.Thr181Asn | missense_variant | 1.0 |
panD | 4044216 | c.65_66insT | frameshift_variant | 1.0 |
embB | 4247289 | p.Ala259Gly | missense_variant | 1.0 |
embB | 4249154 | p.Gly881Arg | missense_variant | 1.0 |
ubiA | 4270024 | c.-191T>G | upstream_gene_variant | 1.0 |