Rv2477c - c.1542T>C


Drug resistance types
25 Sensitive 7 RR-TB 75 HR-TB 19 MDR-TB 5 Pre-XDR-TB 0 XDR-TB 79 Other
lineage Counts
lineage Count
lineage4.9 108
lineage4.2;lineage4.8.1;lineage4.9 2
lineage4.4.1.2 1
lineage2.2.1;lineage4.9 1
lineage4.2;lineage4.6.3;lineage4.9.1 2
La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 1
M.canetti;lineage4.9 5
lineage2.2 3
La1.7;lineage4.9 7
1
M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage6.2.3 1
La1.7;M.canetti;lineage4.9 5
La1.7.X-unk4;lineage4.9 1
La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 4
lineage4.9;lineage7 3
lineage2.2.1 4
lineage4.3.4.2.1 2
lineage4.9;lineage6.3 3
lineage2.2;lineage4.9 1
La1.6;La3;lineage4.6.4;lineage4.8.1;lineage4.9 1
M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 1
lineage1;lineage4.9 1
lineage2.1;lineage4.9;lineage6.3 1
lineage2.1;lineage4.1.4;lineage4.9 1
La1.6;La3;M.canetti;lineage2.1;lineage4.9 1
La1.7;lineage4.9;lineage7 3
La1.7 1
La1;lineage4.9 1
La1.6;La3;M.canetti;lineage4.8.1;lineage4.9 1
lineage4.8.1;lineage4.9;lineage6.1.3;lineage6.3 1
La1.7;lineage3;lineage4.9;lineage7 1
La1.7;lineage4.2 1
lineage3 2
lineage4 1
lineage4.3.4 1
lineage4.2;lineage4.9 1
La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.9 1
La2;lineage2.2 1
La1.7.1;M.canetti;lineage4.2;lineage6.2;lineage6.3 1
lineage4.1.2 1
lineage1.2.1.1 1
La1.6;La3;lineage4.6.4;lineage4.9 1
La1.6;La3;M.canetti;lineage4.6.4;lineage4.9 1
La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 2
La2;lineage4.9 1
lineage2.1;lineage4.9 2
lineage4.9;lineage6.1.3 1
lineage1.1.2 1
M.canetti;lineage1 1
lineage4.6.3;lineage4.9 1
lineage2.2.1.2;lineage7 1
La3;lineage4.9 1
lineage4.3.1;lineage4.9;lineage6 1
lineage2.2.1.2 1
lineage4.9;lineage9 1
M.canetti;lineage4.9;lineage9 1
lineage1.1.3.1 1
La1.6;lineage4 1
lineage4.5 1
La1.2.BCG 1
lineage2.1;lineage4.9;lineage7 1
M.canetti;lineage4.1.4;lineage4.6.3;lineage4.9;lineage6.3 1
La1.6;M.canetti;lineage4.8.1;lineage4.9;lineage6.3 1
La1.6;La3;lineage4.9 1
La3;lineage4.3.4 1
La1.7.1;La1.7.X-unk4 1
lineage1.1.3.2 1
La1.7.1;lineage4.9 1
La1.7.1;M.canetti;lineage4.2;lineage4.9;lineage6.2;lineage6.3 1
spoligotype Counts
spoligotype Count
None 210
Geographic prevalence
Country level data for this variant is available for 1 isolates.
Statisctical support
Not enough data to calculate support.
Samples
ID Drug resistance Lineage Country iso2
SRR5341467 Other lineage4.9 None
ERR294266 MDR-TB lineage4.2;lineage4.8.1;lineage4.9 None
ERR4769450 Other lineage4.9 None
ERR323056 HR-TB lineage4.4.1.2 None
ERR4815310 Other lineage2.2.1;lineage4.9 None
ERR3283026 HR-TB lineage4.2;lineage4.6.3;lineage4.9.1 None
SRR5341299 HR-TB lineage4.9 None
SRR6046594 Other lineage4.9 None
ERR736863 MDR-TB La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 None
ERR926155 Other lineage4.9 None
SRR13861512 Sensitive lineage4.9 None
SRR6045233 Other M.canetti;lineage4.9 None
SRR5341469 HR-TB lineage4.9 None
SRR20970016 Other lineage2.2 None
SRR13861428 Other lineage4.9 None
ERR176560 HR-TB La1.7;lineage4.9 None
ERR1063896 HR-TB None
ERR11252599 Other M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage6.2.3 None
ERR736835 HR-TB La1.7;M.canetti;lineage4.9 None
SRR13861510 Other lineage4.9 None
SRR3675270 Other lineage4.9 None
SRR3675520 Other La1.7.X-unk4;lineage4.9 None
ERR2693245 HR-TB La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 None
SRR3675501 Other La1.7;lineage4.9 None
SRR7535082 Other lineage4.9 None
ERR3797015 HR-TB lineage4.9 None
SRR3675231 MDR-TB lineage4.9;lineage7 None
SRR5341341 Pre-XDR-TB lineage2.2.1 None
SRR20969731 Other lineage2.2.1 None
ERR387051 RR-TB lineage4.9 None
ERR245794 HR-TB lineage4.3.4.2.1 None
ERR736848 Other lineage4.9 None
ERR926157 Other lineage4.9 None
SRR6046225 Other lineage4.9;lineage6.3 None
ERR4815550 Other lineage2.2;lineage4.9 None
SRR13837490 Sensitive lineage4.9 None
ERR181887 Other lineage4.9 None
SRR3675234 HR-TB La1.6;La3;lineage4.6.4;lineage4.8.1;lineage4.9 None
SRR6046133 HR-TB lineage4.9 None
ERR3797014 HR-TB La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 None
SRR6046593 Other lineage4.9 None
SRR6046783 Other La1.7;M.canetti;lineage4.9 None
SRR6046397 RR-TB M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 None
ERR323066 HR-TB lineage4.9 None
SRR13861638 Sensitive lineage4.9 None
SRR3675267 Other La1.7;lineage4.9 None
ERR323045 HR-TB lineage1;lineage4.9 None
SRR5341308 HR-TB lineage4.9 None
SRR23961558 RR-TB lineage2.1;lineage4.9;lineage6.3 None
ERR3797036 HR-TB lineage2.1;lineage4.1.4;lineage4.9 None
ERR1063849 HR-TB lineage4.9 None
ERR1063846 HR-TB lineage4.9 None
ERR3283020 HR-TB La1.6;La3;M.canetti;lineage2.1;lineage4.9 None
ERR212121 HR-TB lineage4.9;lineage6.3 None
ERR926163 Other lineage4.9 None
ERR751326 Other lineage4.9 None
SRR3675488 Other La1.7;lineage4.9 None
SRR6045887 Other La1.7;M.canetti;lineage4.9 None
ERR926159 Sensitive lineage4.9 None
ERR323037 Other lineage4.9 None
SRR5341432 Other La1.7;lineage4.9;lineage7 None
ERR4830353 HR-TB La1.7 None
ERR3290633 Other lineage4.2;lineage4.6.3;lineage4.9.1 None
ERR133825 HR-TB La1;lineage4.9 None
SRR6044876 Sensitive lineage4.9 None
ERR2693257 HR-TB La1.6;La3;M.canetti;lineage4.8.1;lineage4.9 None
SRR1158918 Other lineage4.9 None
ERR4769452 Other lineage4.9 None
ERR5311094 HR-TB lineage4.9 None
SRR5341425 Other lineage4.9 None
SRR13837599 Sensitive lineage4.9 None
SRR6045785 MDR-TB lineage4.2;lineage4.8.1;lineage4.9 None
ERR6358991 HR-TB lineage4.8.1;lineage4.9;lineage6.1.3;lineage6.3 None
SRR5341315 Other La1.7;lineage3;lineage4.9;lineage7 None
SRR23961559 Other La1.7;lineage4.2 None
ERR502510 HR-TB lineage4.9 None
ERR216938 HR-TB La1.7;lineage4.9 None
ERR1034634 HR-TB lineage4.9 None
SRR6046485 Other lineage4.9 None
SRR5341412 Pre-XDR-TB lineage3 None
SRR3675505 Other La1.7;M.canetti;lineage4.9 None
SRR13861430 Other lineage4.9 None
SRR11662690 HR-TB lineage4.9 None
SRR5341456 Other lineage4.9 None
ERR161037 HR-TB lineage4.9 None
ERR926161 Sensitive lineage4.9 None
ERR736856 HR-TB lineage4.9 None
ERR971389 Other lineage4.9 None
ERR181824 MDR-TB lineage4.9 None
SRR6045053 Other lineage4 None
ERR137286 Other lineage4.9 None
SRR5341373 Other lineage4.9 None
ERR176651 Other lineage4.9 None
ERR4810624 MDR-TB lineage2.2 None
ERR736817 HR-TB lineage4.3.4 None
SRR6046295 MDR-TB lineage4.2;lineage4.9 None
ERR3797044 Other La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.9 None
SRR6045010 Sensitive lineage4.9 None
ERR1063839 MDR-TB La2;lineage2.2 None
SRR1159378 Other lineage4.9 None
SRR6046878 Other lineage4.9 None
ERR2026695 MDR-TB La1.7.1;M.canetti;lineage4.2;lineage6.2;lineage6.3 None
ERR3797017 HR-TB La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 None
ERR11081112 Sensitive lineage4.1.2 None
SRR5341400 Sensitive lineage4.9 None
ERR4814734 Other lineage1.2.1.1 None
ERR926162 Sensitive lineage4.9 None
SRR13861403 Other lineage4.9 None
ERR176518 Sensitive lineage4.3.4.2.1 None
ERR2693231 HR-TB La1.6;La3;lineage4.6.4;lineage4.9 None
ERR3283024 HR-TB La1.6;La3;M.canetti;lineage4.6.4;lineage4.9 None
SRR5341300 HR-TB lineage4.9 None
ERR2026698 MDR-TB La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 None
ERR1063857 MDR-TB La2;lineage4.9 None
ERR736839 HR-TB M.canetti;lineage4.9 None
SRR3675495 RR-TB lineage2.1;lineage4.9 None
ERR736837 Pre-XDR-TB lineage4.9 None
SRR6045347 Other lineage4.9 None
ERR3445504 Other lineage4.9;lineage6.1.3 None
SRR5341310 Other lineage1.1.2 None
ERR4799438 Sensitive lineage4.9 in
ERR124636 HR-TB lineage4.9 None
ERR4799478 Pre-XDR-TB lineage2.2.1 None
ERR926160 Other lineage4.9 None
ERR3283032 Other lineage4.9 None
SRR15014655 Other M.canetti;lineage1 None
SRR6046577 Other lineage4.6.3;lineage4.9 None
SRR6046382 RR-TB lineage2.2.1 None
ERR502524 MDR-TB lineage4.9;lineage6.3 None
ERR485006 HR-TB lineage4.9 None
ERR1063862 HR-TB lineage4.9 None
ERR736875 HR-TB lineage4.9 None
SRR18549032 HR-TB lineage2.2.1.2;lineage7 None
ERR181744 HR-TB La3;lineage4.9 None
ERR4769474 HR-TB lineage4.9 None
ERR1063858 HR-TB lineage4.9 None
ERR176751 HR-TB lineage4.9 None
ERR3797028 HR-TB M.canetti;lineage4.9 None
SRR6046299 Other lineage4.3.1;lineage4.9;lineage6 None
ERR473332 Other lineage4.9 None
SRR1172796 Sensitive lineage2.2.1.2 None
SRR10808730 Other lineage4.9 None
SRR6046720 HR-TB lineage4.9;lineage9 None
SRR13861609 Sensitive lineage4.9 None
ERR1035138 MDR-TB lineage2.1;lineage4.9 None
SRR13861429 Other lineage4.9 None
ERR212125 HR-TB lineage4.9 None
SRR13837598 Sensitive lineage4.9 None
SRR17658565 Pre-XDR-TB lineage3 None
ERR3283018 HR-TB lineage4.9 None
ERR736834 HR-TB lineage4.9 None
ERR6359082 Other lineage4.9 None
SRR13861511 Sensitive lineage4.9 None
SRR13837601 Sensitive lineage4.9 None
ERR2026697 MDR-TB La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 None
ERR502511 HR-TB lineage4.9 None
ERR1063856 HR-TB M.canetti;lineage4.9;lineage9 None
ERR8479578 HR-TB lineage1.1.3.1 None
SRR28351554 Other La1.6;lineage4 None
ERR752229 Other lineage4.5 None
ERR736872 HR-TB lineage4.9 None
ERR4798262 HR-TB La1.2.BCG None
ERR212034 HR-TB La1.7;lineage4.9 None
SRR3675385 Other La1.7;lineage4.9 None
ERR779852 HR-TB lineage4.9 None
SRR3675449 RR-TB M.canetti;lineage4.9 None
SRR3675555 MDR-TB lineage2.1;lineage4.9;lineage7 None
SRR5341330 Other lineage4.9 None
SRR3675539 MDR-TB lineage4.9;lineage7 None
SRR6046046 Other lineage4.9 None
ERR702405 HR-TB lineage4.9 None
SRR5535933 Other lineage4.9 None
ERR3283055 HR-TB lineage4.9 None
SRR20969708 HR-TB lineage2.2 None
ERR926165 Other lineage4.9 None
SRR13837485 Sensitive lineage4.9 None
ERR926156 Other lineage4.9 None
ERR926154 Sensitive lineage4.9 None
ERR6359045 Other M.canetti;lineage4.1.4;lineage4.6.3;lineage4.9;lineage6.3 None
SRR5341422 HR-TB La1.7;lineage4.9;lineage7 None
SRR6045555 Other lineage4.9 None
SRR5341313 Other La1.7;lineage4.9;lineage7 None
SRR6046644 MDR-TB La1.6;M.canetti;lineage4.8.1;lineage4.9;lineage6.3 None
ERR323115 Sensitive lineage4.9 None
SRR13837712 Sensitive lineage4.9 None
SRR13861295 Sensitive lineage4.9 None
ERR2693254 Other La1.6;La3;lineage4.9 None
SRR6045219 HR-TB lineage4.9 None
SRR6045399 Other M.canetti;lineage4.9 None
ERR176778 HR-TB lineage4.9 None
ERR926158 Sensitive lineage4.9 None
ERR161039 HR-TB La3;lineage4.3.4 None
ERR3445503 Other La1.7.1;La1.7.X-unk4 None
SRR5341461 HR-TB lineage4.9 None
SRR13861431 Other lineage4.9 None
SRR6046196 Other La1.7;M.canetti;lineage4.9 None
ERR323062 HR-TB lineage4.9 None
ERR176779 HR-TB lineage4.9 None
ERR11488821 MDR-TB lineage1.1.3.2 None
ERR2693230 HR-TB La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 None
ERR323107 HR-TB lineage4.9 None
ERR1063859 HR-TB La1.7.1;lineage4.9 None
ERR736831 Other lineage4.9 None
ERR3283042 HR-TB lineage4.9 None
SRR13837486 Sensitive lineage4.9 None
ERR926164 Other lineage4.9 None
ERR2026696 MDR-TB La1.7.1;M.canetti;lineage4.2;lineage4.9;lineage6.2;lineage6.3 None
SRR3675456 RR-TB lineage4.9;lineage7 None
ERR3797046 HR-TB lineage4.9 None
ERR3283040 HR-TB lineage4.9 None