TB-Profiler result

Run: ERR4815310
Summary

Run ID: ERR4815310

Sample name:

Date: 01-04-2023 13:47:25

Number of reads: 295860

Percentage reads mapped: 20.2

Strain:

Drug-resistance: Other

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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
rrs 1472644 n.799C>T non_coding_transcript_exon_variant 0.96 streptomycin
embB 4247702 p.Pro397Thr missense_variant 0.33 ethambutol
embB 4247706 p.Phe398Tyr missense_variant 0.33 ethambutol
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
gyrB 6324 p.Val362Ala missense_variant 0.33
gyrA 7362 p.Glu21Gln missense_variant 1.0
gyrA 7585 p.Ser95Thr missense_variant 1.0
gyrA 9304 p.Gly668Asp missense_variant 1.0
fgd1 491742 c.960T>C synonymous_variant 1.0
ccsA 619831 c.-60T>G upstream_gene_variant 0.33
ccsA 620625 p.Ile245Met missense_variant 1.0
rpoB 760157 c.351A>G synonymous_variant 0.33
rpoB 760169 p.Met121Ile missense_variant 0.43
rpoB 760171 p.Thr122Asn missense_variant 0.43
rpoB 760176 p.Ala124Ser missense_variant 0.43
rpoB 760181 c.375T>G synonymous_variant 0.43
rpoB 760184 c.378A>G synonymous_variant 0.43
rpoB 760189 p.Phe128Tyr missense_variant 0.38
rpoB 760199 c.393C>G synonymous_variant 0.4
rpoB 760207 p.Ile134Thr missense_variant 0.31
rpoB 760213 p.Asn136Ser missense_variant 0.31
rpoB 760216 p.Asn137Met missense_variant 0.31
rpoB 760218 p.Thr138Ser missense_variant 0.33
rpoB 760223 c.417T>C synonymous_variant 0.33
rpoB 760235 c.429T>C synonymous_variant 0.33
rpoB 760241 c.435G>C synonymous_variant 0.36
rpoB 760244 c.438G>C synonymous_variant 0.31
rpoB 760250 p.Met148Ile missense_variant 0.33
rpoB 760253 c.447T>C synonymous_variant 0.38
rpoB 760271 c.465C>G synonymous_variant 0.38
rpoB 760274 p.Glu156Asp missense_variant 0.38
rpoB 760298 c.492G>C synonymous_variant 0.29
rpoB 760310 c.504G>C synonymous_variant 0.19
rpoB 760652 c.846C>T synonymous_variant 0.4
rpoB 760859 c.1053T>C synonymous_variant 0.33
rpoB 760869 p.Val355Ile missense_variant 0.33
rpoB 760886 c.1080A>G synonymous_variant 0.33
rpoB 760919 c.1113C>G synonymous_variant 0.4
rpoB 760925 c.1119T>C synonymous_variant 0.4
rpoB 760928 c.1122G>C synonymous_variant 0.4
rpoB 760934 c.1128C>T synonymous_variant 0.4
rpoB 761168 c.1362C>G synonymous_variant 0.42
rpoB 761174 c.1368T>C synonymous_variant 0.64
rpoB 761180 c.1374A>C synonymous_variant 0.77
rpoB 761189 c.1383T>C synonymous_variant 0.79
rpoB 761195 c.1389G>C synonymous_variant 0.82
rpoB 761198 c.1392G>C synonymous_variant 0.79
rpoB 761207 c.1401C>T synonymous_variant 0.86
rpoB 761234 c.1428G>C synonymous_variant 0.79
rpoB 761249 c.1443A>G synonymous_variant 0.81
rpoB 761252 c.1446C>G synonymous_variant 0.75
rpoB 761261 c.1455G>T synonymous_variant 0.76
rpoB 761264 c.1458C>G synonymous_variant 0.76
rpoB 761273 c.1467T>C synonymous_variant 0.76
rpoB 761276 c.1470G>C synonymous_variant 0.74
rpoB 761292 p.Val496Ser missense_variant 0.72
rpoB 761312 c.1506G>C synonymous_variant 0.68
rpoB 761318 c.1512G>T synonymous_variant 0.68
rpoB 761327 c.1521A>G synonymous_variant 0.57
rpoB 761534 c.1728G>C synonymous_variant 0.68
rpoB 761537 c.1731C>G synonymous_variant 0.66
rpoB 761540 c.1734C>G synonymous_variant 0.68
rpoB 761549 c.1743G>C synonymous_variant 0.76
rpoB 761552 c.1746G>C synonymous_variant 0.77
rpoB 761558 c.1752C>G synonymous_variant 0.8
rpoB 761561 c.1755C>G synonymous_variant 0.8
rpoB 761570 c.1764T>C synonymous_variant 0.84
rpoB 761573 c.1767C>G synonymous_variant 0.88
rpoB 761579 c.1773G>C synonymous_variant 0.83
rpoB 761612 c.1806G>C synonymous_variant 0.78
rpoB 761615 c.1809A>G synonymous_variant 0.77
rpoB 761633 c.1827G>C synonymous_variant 0.72
rpoB 761643 p.Val613Leu missense_variant 0.76
rpoB 761648 c.1842T>C synonymous_variant 0.74
rpoB 761649 c.1843_1844delAGinsTC synonymous_variant 0.74
rpoB 761661 p.Leu619Phe missense_variant 0.73
rpoB 761675 c.1869G>C synonymous_variant 0.67
rpoB 761690 c.1884G>C synonymous_variant 0.6
rpoB 761693 c.1887G>C synonymous_variant 0.5
rpoB 761694 p.Ile630Tyr missense_variant 0.44
rpoB 761712 p.Val636Ile missense_variant 0.33
rpoB 761715 p.Val637Ile missense_variant 0.25
rpoB 761852 c.2047delA frameshift_variant 0.29
rpoB 761858 c.2052G>C synonymous_variant 0.5
rpoB 761863 p.Ala686Glu missense_variant 0.56
rpoB 761867 c.2061C>T synonymous_variant 0.56
rpoB 761873 c.2067A>C synonymous_variant 0.6
rpoB 761885 c.2079T>C synonymous_variant 0.6
rpoB 761890 p.Val695Ala missense_variant 0.6
rpoB 761903 c.2097T>C synonymous_variant 0.71
rpoB 761907 p.Cys701Gly missense_variant 0.71
rpoB 761912 c.2106T>C synonymous_variant 0.72
rpoB 761916 p.Asp704Asn missense_variant 0.76
rpoB 761921 c.2115C>T synonymous_variant 0.81
rpoB 761948 c.2142G>C synonymous_variant 0.94
rpoB 761951 c.2145G>C synonymous_variant 0.94
rpoB 761955 p.Ile717Phe missense_variant 0.95
rpoB 761998 c.2193_2195delGTC disruptive_inframe_deletion 0.94
rpoB 762005 c.2200_2201insAGC disruptive_inframe_insertion 0.93
rpoB 762009 p.Leu735Met missense_variant 0.93
rpoB 762014 c.2208C>G synonymous_variant 0.93
rpoB 762017 c.2211A>G synonymous_variant 0.94
rpoB 762053 c.2247T>C synonymous_variant 0.94
rpoB 762062 c.2256T>C synonymous_variant 0.95
rpoB 762065 c.2259T>C synonymous_variant 0.95
rpoB 762074 c.2268C>G synonymous_variant 0.94
rpoB 762080 c.2274G>C synonymous_variant 0.95
rpoB 762083 c.2277T>C synonymous_variant 0.95
rpoB 762084 p.Ala760Pro missense_variant 0.95
rpoB 762101 c.2295C>G synonymous_variant 0.91
rpoB 762114 p.Ile770Val missense_variant 0.81
rpoB 762117 p.Ser771Gly missense_variant 0.76
rpoB 762122 p.Asp772Glu missense_variant 0.76
rpoB 762125 p.Glu773Asp missense_variant 0.76
rpoB 762128 c.2322G>C synonymous_variant 0.76
rpoB 762134 c.2328C>G synonymous_variant 0.76
rpoB 762140 c.2334G>C synonymous_variant 0.81
rpoB 762143 c.2337T>C synonymous_variant 0.81
rpoB 762146 p.Glu780Asp missense_variant 0.81
rpoB 762149 c.2343G>C synonymous_variant 0.81
rpoB 762167 c.2361T>C synonymous_variant 0.88
rpoB 762173 p.Glu789Asp missense_variant 0.87
rpoB 762176 c.2370T>C synonymous_variant 0.8
rpoB 762185 c.2379G>C synonymous_variant 0.82
rpoB 762194 c.2388G>C synonymous_variant 0.78
rpoB 762209 c.2403C>G synonymous_variant 0.8
rpoB 762218 c.2412T>C synonymous_variant 0.73
rpoB 762233 c.2427G>C synonymous_variant 0.73
rpoB 762245 c.2439G>C synonymous_variant 0.56
rpoB 762251 c.2445G>C synonymous_variant 0.5
rpoB 762257 c.2451C>G synonymous_variant 0.5
rpoB 762266 c.2460T>C synonymous_variant 0.45
rpoB 762278 c.2472C>T synonymous_variant 0.5
rpoB 762284 c.2478G>C synonymous_variant 0.5
rpoB 762293 c.2487T>G synonymous_variant 0.5
rpoB 762297 p.Leu831Met missense_variant 0.5
rpoB 762305 c.2499G>C synonymous_variant 0.44
rpoB 762813 p.Met1003Glu missense_variant 0.44
rpoB 762819 p.Phe1005Ile missense_variant 0.5
rpoC 762827 c.-543G>C upstream_gene_variant 0.5
rpoC 762830 c.-540C>G upstream_gene_variant 0.5
rpoC 762831 c.-539_-538delAGinsTC upstream_gene_variant 0.5
rpoC 762842 c.-528G>C upstream_gene_variant 0.8
rpoC 762857 c.-513C>G upstream_gene_variant 0.83
rpoB 762858 p.Thr1018Ser missense_variant 0.83
rpoC 762863 c.-507T>G upstream_gene_variant 0.83
rpoB 762878 p.Ile1024Met missense_variant 0.9
rpoB 762879 p.Met1025Leu missense_variant 0.9
rpoC 762896 c.-474G>C upstream_gene_variant 0.92
rpoB 762905 p.Asp1033Glu missense_variant 0.95
rpoC 762926 c.-444C>G upstream_gene_variant 0.96
rpoC 762929 c.-441G>C upstream_gene_variant 0.96
rpoC 762938 c.-432G>C upstream_gene_variant 0.96
rpoC 762959 c.-411G>C upstream_gene_variant 0.96
rpoC 762962 c.-408C>T upstream_gene_variant 0.97
rpoC 762971 c.-399G>C upstream_gene_variant 0.97
rpoC 762983 c.-387C>A upstream_gene_variant 0.96
rpoC 762989 c.-381G>T upstream_gene_variant 0.97
rpoC 762995 c.-375G>C upstream_gene_variant 0.97
rpoB 763005 p.Cys1067Val missense_variant 0.98
rpoC 763022 c.-348C>G upstream_gene_variant 0.95
rpoC 763028 c.-342T>C upstream_gene_variant 0.97
rpoC 763031 c.-339T>G upstream_gene_variant 1.0
rpoC 763043 c.-327G>C upstream_gene_variant 0.88
rpoC 763049 c.-321G>A upstream_gene_variant 0.89
rpoC 763052 c.-318G>C upstream_gene_variant 0.86
rpoC 763053 c.-317_-315delTTGinsCTC upstream_gene_variant 0.86
rpoC 763058 c.-312C>G upstream_gene_variant 0.8
rpoC 763070 c.-300T>C upstream_gene_variant 0.77
rpoB 763074 p.Thr1090Val missense_variant 0.77
rpoC 763085 c.-285C>T upstream_gene_variant 0.76
rpoC 763088 c.-282C>G upstream_gene_variant 0.76
rpoC 763103 c.-267G>C upstream_gene_variant 0.72
rpoC 763115 c.-255T>C upstream_gene_variant 0.63
rpoB 763130 p.Glu1108Asp missense_variant 0.42
rpoC 763148 c.-222G>C upstream_gene_variant 0.44
rpoC 763367 c.-3_-2insC upstream_gene_variant 0.46
rpoC 763375 c.6C>G synonymous_variant 0.65
rpoC 763393 c.24T>C synonymous_variant 0.79
rpoC 763396 c.27A>G synonymous_variant 0.79
rpoC 763399 c.30C>T synonymous_variant 0.79
rpoC 763411 c.42T>G synonymous_variant 0.85
rpoC 763414 c.45T>G synonymous_variant 0.85
rpoC 763417 c.48C>G synonymous_variant 0.85
rpoC 763420 c.51G>C synonymous_variant 0.85
rpoC 763423 p.Glu18Asp missense_variant 0.85
rpoC 763430 c.61_63delAGGinsCGC synonymous_variant 0.85
rpoC 763434 p.Gln22Arg missense_variant 0.85
rpoC 763442 p.Tyr25Lys missense_variant 0.9
rpoC 763456 c.87A>G synonymous_variant 0.94
rpoC 763462 c.93G>C synonymous_variant 0.95
rpoC 763468 c.99G>C synonymous_variant 0.92
rpoC 763483 c.114G>C synonymous_variant 0.93
rpoC 763486 c.117T>C synonymous_variant 0.93
rpoC 763492 c.123G>C synonymous_variant 0.93
rpoC 763517 p.Lys50Arg missense_variant 0.91
rpoC 763528 c.159G>C synonymous_variant 0.91
rpoC 763534 c.165T>C synonymous_variant 0.91
rpoC 763537 c.168C>G synonymous_variant 0.91
rpoC 763546 c.177A>G synonymous_variant 0.91
rpoC 763550 p.Tyr61Ala missense_variant 0.91
rpoC 763570 c.201G>C synonymous_variant 0.94
rpoC 763573 c.204G>C synonymous_variant 0.94
rpoC 763576 c.207C>T synonymous_variant 0.94
rpoC 763578 p.Phe70Tyr missense_variant 0.94
rpoC 763594 c.225C>T synonymous_variant 0.95
rpoC 763630 c.261G>C synonymous_variant 0.94
rpoC 763633 c.264T>C synonymous_variant 0.94
rpoC 763636 c.267T>C synonymous_variant 0.94
rpoC 763660 c.291T>C synonymous_variant 0.96
rpoC 763666 c.297G>C synonymous_variant 0.96
rpoC 763669 c.300C>G synonymous_variant 0.95
rpoC 763672 c.303C>G synonymous_variant 0.93
rpoC 763675 c.306C>G synonymous_variant 0.95
rpoC 763711 c.342G>C synonymous_variant 0.87
rpoC 763714 c.345G>C synonymous_variant 0.83
rpoC 763717 c.348T>C synonymous_variant 0.83
rpoC 763723 c.354G>C synonymous_variant 0.83
rpoC 763729 c.360G>C synonymous_variant 0.81
rpoC 763741 c.372C>T synonymous_variant 0.64
rpoC 763744 c.375G>C synonymous_variant 0.64
rpoC 763765 c.396T>G synonymous_variant 0.44
rpoC 763768 c.399C>G synonymous_variant 0.29
rpoC 763769 p.Tyr134Asn missense_variant 0.29
rpoC 763772 p.Val135Ile missense_variant 0.29
rpoC 763780 c.411C>G synonymous_variant 0.33
rpoC 763783 c.414G>C synonymous_variant 0.33
rpoC 763871 p.Gly168Ser missense_variant 0.4
rpoC 764215 c.846A>C synonymous_variant 0.4
rpoC 764216 p.Asn283Asp missense_variant 0.4
rpoC 764239 c.870T>C synonymous_variant 0.7
rpoC 764257 c.888G>C synonymous_variant 0.7
rpoC 764263 c.894G>C synonymous_variant 0.7
rpoC 764266 c.897T>C synonymous_variant 0.7
rpoC 764277 p.Gln303Leu missense_variant 0.7
rpoC 764280 p.Gln304Arg missense_variant 0.7
rpoC 764291 p.Ser308Asp missense_variant 0.7
rpoC 764297 p.Met310Ala missense_variant 0.7
rpoC 764308 c.939G>C synonymous_variant 0.78
rpoC 764315 p.Ala316Cys missense_variant 0.78
rpoC 764318 p.Val317Ile missense_variant 0.78
rpoC 764326 c.957G>C synonymous_variant 0.78
rpoC 764344 c.975C>G synonymous_variant 0.54
rpoC 764353 c.984G>C synonymous_variant 0.65
rpoC 764371 c.1002G>T synonymous_variant 0.73
rpoC 764377 c.1008C>G synonymous_variant 0.76
rpoC 764387 c.1018_1020delTTGinsCTC synonymous_variant 0.76
rpoC 764405 c.1036_1038delAGGinsCGC synonymous_variant 0.76
rpoC 764410 c.1041G>C synonymous_variant 0.84
rpoC 764419 c.1050C>G synonymous_variant 0.74
rpoC 764431 c.1062G>C synonymous_variant 0.89
rpoC 764434 c.1065A>G synonymous_variant 0.89
rpoC 764435 c.1066_1068delAGGinsCGC synonymous_variant 0.89
rpoC 764438 p.Leu357Met missense_variant 0.78
rpoC 764441 p.Ile358Leu missense_variant 0.89
rpoC 764446 c.1077T>C synonymous_variant 0.82
rpoC 764449 c.1080G>C synonymous_variant 0.74
rpoC 764452 c.1083T>C synonymous_variant 0.84
rpoC 764458 c.1089G>C synonymous_variant 0.83
rpoC 764461 c.1092A>G synonymous_variant 0.85
rpoC 764485 c.1116G>C synonymous_variant 0.88
rpoC 764491 c.1122G>C synonymous_variant 0.91
rpoC 764497 c.1128A>G synonymous_variant 0.88
rpoC 764503 c.1134G>C synonymous_variant 0.9
rpoC 764521 c.1152T>C synonymous_variant 0.92
rpoC 764527 c.1158C>G synonymous_variant 0.88
rpoC 764530 c.1161C>T synonymous_variant 0.88
rpoC 764536 c.1167G>C synonymous_variant 0.94
rpoC 764545 c.1176C>G synonymous_variant 0.96
rpoC 764566 c.1197C>G synonymous_variant 0.94
rpoC 764572 c.1203G>C synonymous_variant 0.94
rpoC 764575 c.1206T>G synonymous_variant 0.97
rpoC 764581 c.1212T>C synonymous_variant 0.97
rpoC 764605 c.1236G>C synonymous_variant 0.96
rpoC 764611 c.1242G>T synonymous_variant 0.97
rpoC 764626 c.1257C>T synonymous_variant 0.97
rpoC 764632 c.1263T>C synonymous_variant 0.97
rpoC 764635 c.1266C>G synonymous_variant 0.97
rpoC 764644 c.1275G>C synonymous_variant 0.95
rpoC 764647 c.1278C>G synonymous_variant 0.97
rpoC 764650 c.1281G>T synonymous_variant 0.98
rpoC 764653 c.1284G>C synonymous_variant 0.98
rpoC 764660 p.Val431Ile missense_variant 0.97
rpoC 764668 c.1299C>T synonymous_variant 0.97
rpoC 764701 c.1332C>G synonymous_variant 0.94
rpoC 764707 c.1338G>C synonymous_variant 0.94
rpoC 764713 c.1344G>C synonymous_variant 0.91
rpoC 764716 c.1347G>C synonymous_variant 0.88
rpoC 764737 c.1368G>C synonymous_variant 0.68
rpoC 764749 c.1380G>C synonymous_variant 0.45
rpoC 764752 c.1383G>C synonymous_variant 0.57
rpoC 764755 p.Asp462Glu missense_variant 0.29
rpoC 764756 p.Leu463Lys missense_variant 0.29
rpoC 764760 p.Asn464Ser missense_variant 0.22
rpoC 764762 p.His465Tyr missense_variant 0.22
rpoC 764780 c.1411_1412delAGinsTC synonymous_variant 0.3
rpoC 764791 c.1422C>G synonymous_variant 0.33
rpoC 764797 c.1428G>C synonymous_variant 0.33
rpoC 764803 c.1434C>G synonymous_variant 0.33
rpoC 764813 p.Gln482Glu missense_variant 0.3
rpoC 764818 c.1449G>C synonymous_variant 0.25
rpoC 764824 c.1455T>C synonymous_variant 0.4
rpoC 764833 c.1464A>G synonymous_variant 0.5
rpoC 764838 p.Val490Ala missense_variant 0.44
rpoC 764843 p.Ala492Ser missense_variant 0.47
rpoC 764857 c.1488G>C synonymous_variant 0.5
rpoC 764858 p.Leu497Met missense_variant 0.53
rpoC 764863 c.1494G>C synonymous_variant 0.55
rpoC 764869 c.1500C>T synonymous_variant 0.6
rpoC 764872 c.1503A>G synonymous_variant 0.65
rpoC 764888 c.1519T>C synonymous_variant 0.65
rpoC 764893 c.1524T>C synonymous_variant 0.65
rpoC 764902 c.1533C>G synonymous_variant 0.68
rpoC 764911 c.1542A>G synonymous_variant 0.67
rpoC 764914 p.Met515Ile missense_variant 0.67
rpoC 764917 c.1548G>C synonymous_variant 0.67
rpoC 764920 c.1551G>C synonymous_variant 0.67
rpoC 764923 c.1554A>G synonymous_variant 0.69
rpoC 764935 c.1566T>C synonymous_variant 0.69
rpoC 764941 c.1572G>C synonymous_variant 0.69
rpoC 764948 c.1579T>C synonymous_variant 0.69
rpoC 764952 p.Val528Ala missense_variant 0.75
rpoC 764968 c.1599T>C synonymous_variant 0.8
rpoC 764998 c.1629G>C synonymous_variant 0.58
rpoC 765499 c.2130C>G synonymous_variant 0.6
rpoC 765508 c.2139C>G synonymous_variant 0.5
rpoC 765548 c.2179_2180delAGinsTC synonymous_variant 0.33
rpoC 765553 c.2184C>T synonymous_variant 0.33
rpoC 766309 c.2940G>C synonymous_variant 0.57
rpoC 766312 c.2943T>C synonymous_variant 0.57
rpoC 766321 c.2952C>G synonymous_variant 0.57
rpoC 766331 p.Leu988Lys missense_variant 0.57
rpoC 766348 c.2979A>G synonymous_variant 0.78
rpoC 766354 c.2985C>G synonymous_variant 0.8
rpoC 766363 c.2994G>C synonymous_variant 0.67
rpoC 766369 c.3000C>G synonymous_variant 0.67
rpoC 766381 c.3012C>T synonymous_variant 0.69
rpoC 766384 c.3015A>G synonymous_variant 0.69
rpoC 766390 c.3021C>T synonymous_variant 0.69
rpoC 766393 c.3024C>G synonymous_variant 0.69
rpoC 766408 c.3039C>T synonymous_variant 0.71
rpoC 766411 c.3042C>G synonymous_variant 0.77
rpoC 766426 c.3057C>T synonymous_variant 0.73
rpoC 766434 p.Glu1022Gly missense_variant 0.7
rpoC 766447 c.3078T>C synonymous_variant 0.43
rpoC 766453 c.3084G>C synonymous_variant 0.43
rpoC 766456 c.3087C>G synonymous_variant 0.43
rpoC 766459 c.3090G>T synonymous_variant 0.43
rpoC 766462 c.3093G>C synonymous_variant 0.43
rpoC 766483 c.3114G>C synonymous_variant 0.29
rpoC 766486 c.3117A>G synonymous_variant 0.29
rpoC 766555 p.Tyr1062* stop_gained 0.29
rpoC 766800 p.Ala1144Asp missense_variant 0.62
rpoC 766804 c.3435A>G synonymous_variant 0.77
rpoC 766811 p.Ser1148Ala missense_variant 0.67
rpoC 766835 p.Val1156Ile missense_variant 0.73
rpoC 766843 c.3474T>C synonymous_variant 0.73
rpoC 766846 c.3477C>G synonymous_variant 0.73
rpoC 766861 c.3492G>C synonymous_variant 0.77
rpoC 766867 c.3498C>G synonymous_variant 0.73
rpoC 766868 p.Ile1167Val missense_variant 0.55
rpoC 766879 c.3510G>C synonymous_variant 0.29
rpoC 766885 c.3516G>A synonymous_variant 0.33
rpoC 766894 c.3525T>C synonymous_variant 0.4
rpoC 766900 c.3531T>C synonymous_variant 0.4
mmpL5 775639 p.Ile948Val missense_variant 1.0
mmpL5 776182 p.Asp767Asn missense_variant 1.0
mmpL5 776807 c.1674G>A synonymous_variant 0.25
rpsL 781395 c.-165T>C upstream_gene_variant 1.0
rplC 800633 c.-176T>C upstream_gene_variant 0.44
rplC 800648 c.-161A>G upstream_gene_variant 0.76
rplC 800654 c.-155T>C upstream_gene_variant 0.76
rplC 800672 c.-137G>C upstream_gene_variant 0.7
rplC 800690 c.-119C>T upstream_gene_variant 0.72
rplC 800693 c.-116A>G upstream_gene_variant 0.72
rplC 800702 c.-107G>A upstream_gene_variant 0.72
rplC 800703 c.-106T>C upstream_gene_variant 0.75
rplC 800715 c.-94A>C upstream_gene_variant 0.77
rplC 800720 c.-89T>C upstream_gene_variant 0.77
rplC 800723 c.-86C>G upstream_gene_variant 0.77
rplC 800726 c.-83G>C upstream_gene_variant 0.77
rplC 800744 c.-65G>C upstream_gene_variant 0.76
rplC 800759 c.-50C>T upstream_gene_variant 0.78
rplC 800780 c.-29C>G upstream_gene_variant 0.7
rplC 800786 c.-23C>T upstream_gene_variant 0.57
rplC 800791 c.-18A>G upstream_gene_variant 0.4
fbiC 1305025 p.Glu699Lys missense_variant 0.67
fbiC 1305417 c.2487C>T synonymous_variant 0.67
Rv1258c 1406760 c.580_581insC frameshift_variant 1.0
rrs 1471659 n.-187C>T upstream_gene_variant 1.0
rrs 1471852 n.7T>A non_coding_transcript_exon_variant 0.31
rrs 1471923 n.78T>C non_coding_transcript_exon_variant 0.95
rrs 1471925 n.80T>C non_coding_transcript_exon_variant 0.95
rrs 1471932 n.87A>G non_coding_transcript_exon_variant 0.95
rrs 1471934 n.89A>G non_coding_transcript_exon_variant 0.95
rrs 1471985 n.140T>C non_coding_transcript_exon_variant 0.98
rrs 1471986 n.141C>T non_coding_transcript_exon_variant 0.98
rrs 1472037 n.192A>T non_coding_transcript_exon_variant 0.92
rrs 1472038 n.193_194insTA non_coding_transcript_exon_variant 0.92
rrs 1472041 n.196C>G non_coding_transcript_exon_variant 0.92
rrs 1472042 n.197_198insG non_coding_transcript_exon_variant 0.92
rrs 1472045 n.200T>C non_coding_transcript_exon_variant 0.92
rrs 1472054 n.210_212delCGC non_coding_transcript_exon_variant 0.92
rrs 1472061 n.216A>T non_coding_transcript_exon_variant 0.92
rrs 1472062 n.217G>T non_coding_transcript_exon_variant 0.92
rrs 1472068 n.223T>C non_coding_transcript_exon_variant 0.94
rrs 1472069 n.224G>A non_coding_transcript_exon_variant 0.89
rrs 1472106 n.261G>A non_coding_transcript_exon_variant 0.98
rrs 1472108 n.263C>T non_coding_transcript_exon_variant 0.99
rrs 1472123 n.278A>G non_coding_transcript_exon_variant 0.99
rrs 1472151 n.306C>A non_coding_transcript_exon_variant 0.95
rrs 1472160 n.315C>T non_coding_transcript_exon_variant 0.99
rrs 1472172 n.327T>C non_coding_transcript_exon_variant 0.97
rrs 1472279 n.434T>C non_coding_transcript_exon_variant 0.99
rrs 1472285 n.440A>G non_coding_transcript_exon_variant 1.0
rrs 1472286 n.441C>G non_coding_transcript_exon_variant 1.0
rrs 1472289 n.444T>G non_coding_transcript_exon_variant 1.0
rrs 1472290 n.445C>G non_coding_transcript_exon_variant 1.0
rrs 1472324 n.479G>C non_coding_transcript_exon_variant 1.0
rrs 1472325 n.480G>C non_coding_transcript_exon_variant 1.0
rrs 1472328 n.483G>C non_coding_transcript_exon_variant 1.0
rrs 1472330 n.485G>T non_coding_transcript_exon_variant 1.0
rrs 1472344 n.499C>T non_coding_transcript_exon_variant 1.0
rrs 1472435 n.590T>C non_coding_transcript_exon_variant 1.0
rrs 1472438 n.593T>C non_coding_transcript_exon_variant 1.0
rrs 1472439 n.594C>T non_coding_transcript_exon_variant 1.0
rrs 1472448 n.603T>C non_coding_transcript_exon_variant 1.0
rrs 1472450 n.605A>G non_coding_transcript_exon_variant 1.0
rrs 1472451 n.606C>G non_coding_transcript_exon_variant 1.0
rrs 1472461 n.616G>C non_coding_transcript_exon_variant 1.0
rrs 1472462 n.617T>C non_coding_transcript_exon_variant 1.0
rrs 1472464 n.619A>G non_coding_transcript_exon_variant 1.0
rrs 1472471 n.626G>A non_coding_transcript_exon_variant 1.0
rrs 1472489 n.644A>T non_coding_transcript_exon_variant 1.0
rrs 1472494 n.649A>G non_coding_transcript_exon_variant 1.0
rrs 1472498 n.653C>T non_coding_transcript_exon_variant 1.0
rrs 1472530 n.685G>A non_coding_transcript_exon_variant 0.99
rrs 1472558 n.713G>A non_coding_transcript_exon_variant 0.97
rrs 1472569 n.724G>A non_coding_transcript_exon_variant 0.96
rrs 1472607 n.762G>A non_coding_transcript_exon_variant 0.97
rrs 1472612 n.767G>T non_coding_transcript_exon_variant 0.96
rrs 1472660 n.815T>C non_coding_transcript_exon_variant 0.99
rrs 1472661 n.816A>G non_coding_transcript_exon_variant 0.95
rrs 1472673 n.828T>G non_coding_transcript_exon_variant 0.99
rrs 1472674 n.829T>A non_coding_transcript_exon_variant 0.99
rrs 1472675 n.832delC non_coding_transcript_exon_variant 0.99
rrs 1472713 n.868T>C non_coding_transcript_exon_variant 0.96
rrs 1472714 n.869A>G non_coding_transcript_exon_variant 0.96
rrs 1472828 n.983T>C non_coding_transcript_exon_variant 0.98
rrs 1472837 n.992C>G non_coding_transcript_exon_variant 0.95
rrs 1472838 n.993A>G non_coding_transcript_exon_variant 0.95
rrs 1472844 n.999_1000insCG non_coding_transcript_exon_variant 0.96
rrs 1472847 n.1004_1005delCT non_coding_transcript_exon_variant 0.96
rrs 1472851 n.1006A>G non_coding_transcript_exon_variant 0.96
rrs 1472856 n.1011T>C non_coding_transcript_exon_variant 0.98
rrs 1472858 n.1013G>C non_coding_transcript_exon_variant 0.98
rrs 1472860 n.1015C>T non_coding_transcript_exon_variant 0.98
rrs 1472861 n.1016G>C non_coding_transcript_exon_variant 0.98
rrs 1472869 n.1024G>T non_coding_transcript_exon_variant 0.98
rrs 1472873 n.1028C>G non_coding_transcript_exon_variant 0.98
rrs 1472875 n.1031delG non_coding_transcript_exon_variant 1.0
rrs 1472895 n.1050C>T non_coding_transcript_exon_variant 1.0
rrs 1472957 n.1112C>T non_coding_transcript_exon_variant 0.99
rrs 1472958 n.1113A>G non_coding_transcript_exon_variant 0.98
rrs 1472988 n.1143T>C non_coding_transcript_exon_variant 0.98
rrs 1473005 n.1160C>T non_coding_transcript_exon_variant 1.0
rrs 1473035 n.1190G>A non_coding_transcript_exon_variant 1.0
rrs 1473080 n.1235C>T non_coding_transcript_exon_variant 0.99
rrs 1473088 n.1243A>G non_coding_transcript_exon_variant 1.0
rrs 1473089 n.1244A>T non_coding_transcript_exon_variant 0.98
rrs 1473093 n.1248C>T non_coding_transcript_exon_variant 1.0
rrs 1473109 n.1264T>C non_coding_transcript_exon_variant 0.98
rrs 1473111 n.1266A>C non_coding_transcript_exon_variant 1.0
rrs 1473115 n.1270G>T non_coding_transcript_exon_variant 0.98
rrs 1473121 n.1276T>C non_coding_transcript_exon_variant 0.95
rrs 1473123 n.1278A>T non_coding_transcript_exon_variant 1.0
rrs 1473145 n.1300C>T non_coding_transcript_exon_variant 1.0
rrs 1473148 n.1303G>A non_coding_transcript_exon_variant 0.98
rrs 1473163 n.1318C>T non_coding_transcript_exon_variant 0.98
rrs 1473166 n.1321G>A non_coding_transcript_exon_variant 1.0
rrs 1473259 n.1414C>T non_coding_transcript_exon_variant 1.0
rrs 1473276 n.1431A>G non_coding_transcript_exon_variant 1.0
rrs 1473283 n.1438T>C non_coding_transcript_exon_variant 0.96
rrs 1473292 n.1447G>T non_coding_transcript_exon_variant 0.96
rrs 1473293 n.1448G>T non_coding_transcript_exon_variant 0.96
rrs 1473301 n.1456T>C non_coding_transcript_exon_variant 0.99
rrl 1473667 n.11delC non_coding_transcript_exon_variant 1.0
rrl 1473679 n.22T>C non_coding_transcript_exon_variant 1.0
rrl 1473696 n.39T>C non_coding_transcript_exon_variant 0.94
rrl 1473697 n.40C>A non_coding_transcript_exon_variant 0.91
rrl 1473698 n.42dupA non_coding_transcript_exon_variant 0.91
rrl 1473728 n.71A>T non_coding_transcript_exon_variant 0.93
rrl 1473743 n.86C>T non_coding_transcript_exon_variant 0.91
rrl 1473746 n.89T>C non_coding_transcript_exon_variant 0.91
rrl 1473758 n.101G>T non_coding_transcript_exon_variant 0.85
rrl 1473770 n.113T>G non_coding_transcript_exon_variant 0.75
rrl 1473876 n.219G>A non_coding_transcript_exon_variant 1.0
rrl 1473888 n.231T>A non_coding_transcript_exon_variant 1.0
rrl 1473898 n.241C>T non_coding_transcript_exon_variant 1.0
rrl 1473899 n.242A>C non_coding_transcript_exon_variant 1.0
rrl 1473905 n.248T>C non_coding_transcript_exon_variant 1.0
rrl 1473916 n.259C>A non_coding_transcript_exon_variant 1.0
rrl 1473922 n.265A>T non_coding_transcript_exon_variant 1.0
rrl 1474110 n.453A>G non_coding_transcript_exon_variant 1.0
rrl 1474130 n.473C>T non_coding_transcript_exon_variant 1.0
rrl 1474140 n.483C>T non_coding_transcript_exon_variant 1.0
rrl 1474151 n.494C>T non_coding_transcript_exon_variant 1.0
rrl 1474174 n.517A>G non_coding_transcript_exon_variant 1.0
rrl 1474182 n.525C>T non_coding_transcript_exon_variant 1.0
rrl 1474184 n.527C>T non_coding_transcript_exon_variant 1.0
rrl 1474185 n.529delA non_coding_transcript_exon_variant 1.0
rrl 1474200 n.545delT non_coding_transcript_exon_variant 1.0
rrl 1474249 n.592G>T non_coding_transcript_exon_variant 1.0
rrl 1474266 n.609T>C non_coding_transcript_exon_variant 1.0
rrl 1474269 n.612C>T non_coding_transcript_exon_variant 1.0
rrl 1474289 n.632C>T non_coding_transcript_exon_variant 0.25
rrl 1474291 n.635_649delTTCCTCTCCGGAGGA non_coding_transcript_exon_variant 1.0
rrl 1474308 n.651G>T non_coding_transcript_exon_variant 1.0
rrl 1474310 n.653T>G non_coding_transcript_exon_variant 1.0
rrl 1474351 n.694G>C non_coding_transcript_exon_variant 1.0
rrl 1474353 n.696A>G non_coding_transcript_exon_variant 1.0
rrl 1474356 n.699T>C non_coding_transcript_exon_variant 1.0
rrl 1474362 n.705A>G non_coding_transcript_exon_variant 0.99
rrl 1474399 n.742G>A non_coding_transcript_exon_variant 1.0
rrl 1474451 n.794T>C non_coding_transcript_exon_variant 1.0
rrl 1474467 n.810A>G non_coding_transcript_exon_variant 1.0
rrl 1474487 n.830G>T non_coding_transcript_exon_variant 1.0
rrl 1474496 n.839C>A non_coding_transcript_exon_variant 1.0
rrl 1474497 n.840G>T non_coding_transcript_exon_variant 1.0
rrl 1474506 n.849C>G non_coding_transcript_exon_variant 1.0
rrl 1474507 n.850G>T non_coding_transcript_exon_variant 1.0
rrl 1474517 n.860C>G non_coding_transcript_exon_variant 1.0
rrl 1474537 n.880G>A non_coding_transcript_exon_variant 1.0
rrl 1474626 n.969T>C non_coding_transcript_exon_variant 1.0
rrl 1474628 n.971C>T non_coding_transcript_exon_variant 0.89
rrl 1474632 n.975G>T non_coding_transcript_exon_variant 1.0
rrl 1474636 n.979A>T non_coding_transcript_exon_variant 1.0
rrl 1474637 n.980C>T non_coding_transcript_exon_variant 1.0
rrl 1474638 n.981C>G non_coding_transcript_exon_variant 1.0
rrl 1474639 n.982G>C non_coding_transcript_exon_variant 1.0
rrl 1474688 n.1031G>A non_coding_transcript_exon_variant 1.0
rrl 1474695 n.1038A>C non_coding_transcript_exon_variant 0.44
rrl 1474709 n.1053_1056delTGGT non_coding_transcript_exon_variant 1.0
rrl 1474717 n.1060_1061insGTGAG non_coding_transcript_exon_variant 1.0
rrl 1474722 n.1065T>C non_coding_transcript_exon_variant 1.0
rrl 1474734 n.1077G>T non_coding_transcript_exon_variant 1.0
rrl 1474749 n.1092C>T non_coding_transcript_exon_variant 1.0
rrl 1474760 n.1103A>G non_coding_transcript_exon_variant 0.99
rrl 1474774 n.1117A>G non_coding_transcript_exon_variant 1.0
rrl 1474794 n.1137C>T non_coding_transcript_exon_variant 1.0
rrl 1474798 n.1141C>A non_coding_transcript_exon_variant 1.0
rrl 1474803 n.1146G>A non_coding_transcript_exon_variant 1.0
rrl 1474812 n.1155G>A non_coding_transcript_exon_variant 1.0
rrl 1474823 n.1166C>G non_coding_transcript_exon_variant 1.0
rrl 1474824 n.1167A>G non_coding_transcript_exon_variant 1.0
rrl 1474825 n.1168G>A non_coding_transcript_exon_variant 1.0
rrl 1474830 n.1173A>G non_coding_transcript_exon_variant 1.0
rrl 1474837 n.1180A>G non_coding_transcript_exon_variant 1.0
rrl 1474864 n.1207C>T non_coding_transcript_exon_variant 1.0
rrl 1474896 n.1239A>G non_coding_transcript_exon_variant 1.0
rrl 1474901 n.1244A>G non_coding_transcript_exon_variant 1.0
rrl 1474904 n.1247G>C non_coding_transcript_exon_variant 1.0
rrl 1474913 n.1256T>C non_coding_transcript_exon_variant 1.0
rrl 1474921 n.1264C>T non_coding_transcript_exon_variant 0.99
rrl 1474932 n.1275C>T non_coding_transcript_exon_variant 0.99
rrl 1474951 n.1294C>A non_coding_transcript_exon_variant 1.0
rrl 1474954 n.1297A>T non_coding_transcript_exon_variant 1.0
rrl 1474959 n.1302C>T non_coding_transcript_exon_variant 1.0
rrl 1474963 n.1306G>T non_coding_transcript_exon_variant 1.0
rrl 1474971 n.1314T>G non_coding_transcript_exon_variant 1.0
rrl 1474974 n.1317G>T non_coding_transcript_exon_variant 1.0
rrl 1474989 n.1332C>G non_coding_transcript_exon_variant 1.0
rrl 1475060 n.1404delC non_coding_transcript_exon_variant 1.0
rrl 1475063 n.1406A>T non_coding_transcript_exon_variant 1.0
rrl 1475065 n.1408G>A non_coding_transcript_exon_variant 1.0
rrl 1475067 n.1410A>G non_coding_transcript_exon_variant 1.0
rrl 1475076 n.1419C>A non_coding_transcript_exon_variant 1.0
rrl 1475079 n.1422T>C non_coding_transcript_exon_variant 1.0
rrl 1475081 n.1424C>T non_coding_transcript_exon_variant 1.0
rrl 1475088 n.1431A>G non_coding_transcript_exon_variant 1.0
rrl 1475090 n.1433A>T non_coding_transcript_exon_variant 1.0
rrl 1475094 n.1437C>T non_coding_transcript_exon_variant 1.0
rrl 1475108 n.1451C>T non_coding_transcript_exon_variant 0.94
rrl 1475111 n.1454G>A non_coding_transcript_exon_variant 0.95
rrl 1475114 n.1457C>T non_coding_transcript_exon_variant 0.95
rrl 1475116 n.1459G>A non_coding_transcript_exon_variant 0.95
rrl 1475119 n.1462C>T non_coding_transcript_exon_variant 0.95
rrl 1475120 n.1463G>T non_coding_transcript_exon_variant 0.95
rrl 1475137 n.1480A>G non_coding_transcript_exon_variant 0.96
rrl 1475171 n.1514C>T non_coding_transcript_exon_variant 0.97
rrl 1475202 n.1545G>T non_coding_transcript_exon_variant 0.62
rrl 1475206 n.1549C>A non_coding_transcript_exon_variant 0.4
rrl 1475440 n.1783T>G non_coding_transcript_exon_variant 1.0
rrl 1475452 n.1795C>A non_coding_transcript_exon_variant 1.0
rrl 1475458 n.1801C>T non_coding_transcript_exon_variant 1.0
rrl 1475460 n.1803A>G non_coding_transcript_exon_variant 1.0
rrl 1475480 n.1823A>G non_coding_transcript_exon_variant 1.0
rrl 1475485 n.1828C>T non_coding_transcript_exon_variant 1.0
rrl 1475486 n.1829A>T non_coding_transcript_exon_variant 1.0
rrl 1475499 n.1842C>A non_coding_transcript_exon_variant 0.96
rrl 1475500 n.1843A>T non_coding_transcript_exon_variant 0.99
rrl 1475526 n.1869C>A non_coding_transcript_exon_variant 0.99
rrl 1475531 n.1874C>T non_coding_transcript_exon_variant 0.99
rrl 1475538 n.1881T>A non_coding_transcript_exon_variant 0.98
rrl 1475539 n.1882A>T non_coding_transcript_exon_variant 0.98
rrl 1475542 n.1885A>G non_coding_transcript_exon_variant 0.98
rrl 1475544 n.1887A>T non_coding_transcript_exon_variant 0.98
rrl 1475545 n.1888T>G non_coding_transcript_exon_variant 0.98
rrl 1475550 n.1893A>G non_coding_transcript_exon_variant 0.98
rrl 1475659 n.2002_2003insGA non_coding_transcript_exon_variant 1.0
rrl 1475696 n.2039T>A non_coding_transcript_exon_variant 1.0
rrl 1475703 n.2046A>T non_coding_transcript_exon_variant 1.0
rrl 1475753 n.2096C>T non_coding_transcript_exon_variant 1.0
rrl 1475757 n.2100_2101insG non_coding_transcript_exon_variant 1.0
rrl 1475762 n.2105G>T non_coding_transcript_exon_variant 0.99
rrl 1475763 n.2106C>T non_coding_transcript_exon_variant 1.0
rrl 1475764 n.2107A>G non_coding_transcript_exon_variant 1.0
rrl 1475765 n.2108A>T non_coding_transcript_exon_variant 1.0
rrl 1475768 n.2111G>T non_coding_transcript_exon_variant 0.97
rrl 1475769 n.2112T>C non_coding_transcript_exon_variant 0.99
rrl 1475881 n.2224T>C non_coding_transcript_exon_variant 1.0
rrl 1475883 n.2226A>T non_coding_transcript_exon_variant 1.0
rrl 1475884 n.2227A>G non_coding_transcript_exon_variant 1.0
rrl 1475897 n.2240T>C non_coding_transcript_exon_variant 1.0
rrl 1475900 n.2243A>G non_coding_transcript_exon_variant 1.0
rrl 1475902 n.2245T>C non_coding_transcript_exon_variant 1.0
rrl 1475916 n.2259C>G non_coding_transcript_exon_variant 1.0
rrl 1475975 n.2318C>T non_coding_transcript_exon_variant 1.0
rrl 1475977 n.2320A>G non_coding_transcript_exon_variant 1.0
rrl 1475988 n.2331A>G non_coding_transcript_exon_variant 1.0
rrl 1475997 n.2340A>T non_coding_transcript_exon_variant 1.0
rrl 1476030 n.2373A>G non_coding_transcript_exon_variant 1.0
rrl 1476032 n.2375C>G non_coding_transcript_exon_variant 1.0
rrl 1476033 n.2376T>G non_coding_transcript_exon_variant 1.0
rrl 1476035 n.2378G>C non_coding_transcript_exon_variant 1.0
rrl 1476044 n.2387T>G non_coding_transcript_exon_variant 1.0
rrl 1476045 n.2388G>T non_coding_transcript_exon_variant 0.22
rrl 1476046 n.2389G>T non_coding_transcript_exon_variant 1.0
rrl 1476047 n.2390G>T non_coding_transcript_exon_variant 1.0
rrl 1476049 n.2392C>T non_coding_transcript_exon_variant 1.0
rrl 1476086 n.2429G>A non_coding_transcript_exon_variant 0.98
rrl 1476087 n.2430C>T non_coding_transcript_exon_variant 0.99
rrl 1476089 n.2432T>C non_coding_transcript_exon_variant 0.98
rrl 1476091 n.2434_2435insG non_coding_transcript_exon_variant 0.99
rrl 1476099 n.2442A>G non_coding_transcript_exon_variant 0.99
rrl 1476100 n.2443A>C non_coding_transcript_exon_variant 0.99
rrl 1476103 n.2446C>G non_coding_transcript_exon_variant 0.99
rrl 1476105 n.2450delA non_coding_transcript_exon_variant 0.99
rrl 1476110 n.2453G>C non_coding_transcript_exon_variant 0.99
rrl 1476113 n.2456T>G non_coding_transcript_exon_variant 0.99
rrl 1476131 n.2474C>T non_coding_transcript_exon_variant 0.99
rrl 1476160 n.2503T>C non_coding_transcript_exon_variant 0.99
rrl 1476164 n.2507A>G non_coding_transcript_exon_variant 0.99
rrl 1476194 n.2537A>G non_coding_transcript_exon_variant 0.99
rrl 1476200 n.2543A>T non_coding_transcript_exon_variant 0.99
rrl 1476201 n.2544C>T non_coding_transcript_exon_variant 0.99
rrl 1476214 n.2557G>T non_coding_transcript_exon_variant 0.98
rrl 1476215 n.2558C>T non_coding_transcript_exon_variant 0.99
rrl 1476224 n.2567A>G non_coding_transcript_exon_variant 1.0
rrl 1476245 n.2588C>T non_coding_transcript_exon_variant 1.0
rrl 1476252 n.2595T>G non_coding_transcript_exon_variant 1.0
rrl 1476256 n.2599A>G non_coding_transcript_exon_variant 1.0
rrl 1476260 n.2603A>G non_coding_transcript_exon_variant 1.0
rrl 1476281 n.2624T>C non_coding_transcript_exon_variant 1.0
rrl 1476297 n.2640C>G non_coding_transcript_exon_variant 1.0
rrl 1476298 n.2641C>G non_coding_transcript_exon_variant 0.99
rrl 1476300 n.2643G>T non_coding_transcript_exon_variant 1.0
rrl 1476301 n.2644A>T non_coding_transcript_exon_variant 1.0
rrl 1476309 n.2652G>C non_coding_transcript_exon_variant 0.99
rrl 1476428 n.2771C>T non_coding_transcript_exon_variant 1.0
rrl 1476536 n.2879G>A non_coding_transcript_exon_variant 0.99
rrl 1476539 n.2882A>G non_coding_transcript_exon_variant 1.0
rrl 1476540 n.2883C>G non_coding_transcript_exon_variant 1.0
rrl 1476572 n.2915G>A non_coding_transcript_exon_variant 0.99
rrl 1476573 n.2916A>T non_coding_transcript_exon_variant 0.99
rrl 1476584 n.2927C>G non_coding_transcript_exon_variant 0.96
rrl 1476585 n.2928A>G non_coding_transcript_exon_variant 0.98
rrl 1476595 n.2938C>A non_coding_transcript_exon_variant 0.92
rrl 1476600 n.2943A>C non_coding_transcript_exon_variant 0.88
rrl 1476602 n.2945G>T non_coding_transcript_exon_variant 0.87
rrl 1476607 n.2950C>T non_coding_transcript_exon_variant 0.5
rrl 1476608 n.2951C>G non_coding_transcript_exon_variant 0.5
rrl 1476614 n.2957A>T non_coding_transcript_exon_variant 0.5
rrl 1476616 n.2959A>G non_coding_transcript_exon_variant 0.5
rrl 1476619 n.2962C>T non_coding_transcript_exon_variant 0.5
rrl 1476624 n.2967T>A non_coding_transcript_exon_variant 0.5
rrl 1476625 n.2968C>T non_coding_transcript_exon_variant 0.5
rrl 1476628 n.2971T>G non_coding_transcript_exon_variant 0.5
rrl 1476629 n.2972C>A non_coding_transcript_exon_variant 0.5
rrl 1476630 n.2973A>G non_coding_transcript_exon_variant 0.5
rpsA 1833643 c.102C>T synonymous_variant 0.33
rpsA 1833646 c.105T>C synonymous_variant 0.41
rpsA 1833649 c.108C>T synonymous_variant 0.45
rpsA 1833661 c.120A>G synonymous_variant 0.47
rpsA 1833668 p.Ile43Val missense_variant 0.48
rpsA 1833676 c.135A>G synonymous_variant 0.52
rpsA 1833679 c.138G>C synonymous_variant 0.52
rpsA 1833684 p.Arg48His missense_variant 0.52
rpsA 1833694 c.153G>C synonymous_variant 0.57
rpsA 1833697 c.156C>G synonymous_variant 0.59
rpsA 1833700 c.159C>G synonymous_variant 0.59
rpsA 1833721 c.180A>G synonymous_variant 0.69
rpsA 1833727 c.186G>C synonymous_variant 0.72
rpsA 1833734 p.Ala65Ser missense_variant 0.72
rpsA 1833739 c.198C>T synonymous_variant 0.74
rpsA 1833742 c.201A>G synonymous_variant 0.74
rpsA 1833769 c.228C>T synonymous_variant 0.7
rpsA 1833770 p.Asn77Asp missense_variant 0.7
rpsA 1833778 c.237C>T synonymous_variant 0.71
rpsA 1833781 c.240T>C synonymous_variant 0.65
rpsA 1833782 p.Ser81Glu missense_variant 0.68
rpsA 1833787 c.246C>T synonymous_variant 0.7
rpsA 1833790 c.249T>C synonymous_variant 0.7
rpsA 1833797 p.Val86Ile missense_variant 0.7
rpsA 1833802 p.Glu87Asp missense_variant 0.74
rpsA 1833805 c.264C>G synonymous_variant 0.76
rpsA 1833811 c.270G>C synonymous_variant 0.78
rpsA 1833817 c.276C>G synonymous_variant 0.8
rpsA 1833829 c.288A>G synonymous_variant 0.82
rpsA 1833832 c.291G>A synonymous_variant 0.86
rpsA 1833838 c.297G>C synonymous_variant 0.88
rpsA 1833841 c.300C>G synonymous_variant 0.85
rpsA 1833847 c.306C>G synonymous_variant 0.86
rpsA 1833856 c.315A>G synonymous_variant 0.87
rpsA 1833862 c.321G>C synonymous_variant 0.88
rpsA 1833877 c.336C>G synonymous_variant 0.88
rpsA 1833883 c.342C>T synonymous_variant 0.9
rpsA 1833884 p.Thr115Ala missense_variant 0.9
rpsA 1833894 p.Ala118Glu missense_variant 0.91
rpsA 1833914 p.Ala125Pro missense_variant 0.95
rpsA 1833921 p.Lys127Thr missense_variant 0.93
rpsA 1833925 c.384C>T synonymous_variant 0.93
rpsA 1833928 c.387G>C synonymous_variant 0.92
rpsA 1833952 c.411C>T synonymous_variant 0.94
rpsA 1833955 c.414G>C synonymous_variant 0.94
rpsA 1833970 c.429G>T synonymous_variant 0.89
rpsA 1833973 c.432G>C synonymous_variant 0.88
rpsA 1833979 c.438T>C synonymous_variant 0.87
rpsA 1833985 c.444G>C synonymous_variant 0.92
rpsA 1833997 c.456G>C synonymous_variant 0.93
rpsA 1834000 c.459G>C synonymous_variant 0.93
rpsA 1834009 c.468C>T synonymous_variant 0.93
rpsA 1834012 c.471G>C synonymous_variant 0.92
rpsA 1834015 c.474G>C synonymous_variant 0.92
rpsA 1834024 c.483G>C synonymous_variant 0.94
rpsA 1834030 c.489C>G synonymous_variant 0.94
rpsA 1834040 p.Lys167Gln missense_variant 0.94
rpsA 1834076 p.Asn179His missense_variant 0.9
rpsA 1834093 c.552G>C synonymous_variant 0.9
rpsA 1834102 c.561T>C synonymous_variant 0.79
rpsA 1834105 c.564C>T synonymous_variant 0.79
rpsA 1834108 c.567C>G synonymous_variant 0.79
rpsA 1834114 c.573G>C synonymous_variant 0.79
rpsA 1834135 c.594G>C synonymous_variant 0.67
rpsA 1834139 c.598_599delAGinsTC synonymous_variant 0.55
rpsA 1834151 p.Asn204His missense_variant 0.33
rpsA 1834177 c.636A>C synonymous_variant 1.0
rpsA 1834183 c.642T>C synonymous_variant 0.9
rpsA 1834195 c.654G>C synonymous_variant 0.92
rpsA 1834213 c.672G>C synonymous_variant 0.94
rpsA 1834222 c.681T>C synonymous_variant 0.94
rpsA 1834234 c.693G>C synonymous_variant 0.94
rpsA 1834240 c.699T>C synonymous_variant 0.94
rpsA 1834243 c.702G>C synonymous_variant 0.89
rpsA 1834249 c.708T>C synonymous_variant 0.95
rpsA 1834261 c.720A>G synonymous_variant 0.92
rpsA 1834264 c.723G>C synonymous_variant 0.92
rpsA 1834294 c.753G>C synonymous_variant 0.94
rpsA 1834298 p.Gln253Thr missense_variant 0.94
rpsA 1834303 c.762T>C synonymous_variant 0.91
rpsA 1834318 c.777C>G synonymous_variant 0.95
rpsA 1834327 c.786G>T synonymous_variant 0.97
rpsA 1834340 p.Met267Leu missense_variant 0.93
rpsA 1834348 c.807T>C synonymous_variant 0.96
rpsA 1834354 c.813G>C synonymous_variant 0.96
rpsA 1834357 c.816T>C synonymous_variant 0.95
rpsA 1834360 c.819G>C synonymous_variant 0.95
rpsA 1834361 c.820T>C synonymous_variant 0.95
rpsA 1834366 c.825A>G synonymous_variant 0.96
rpsA 1834369 c.828C>G synonymous_variant 0.86
rpsA 1834378 c.837T>G synonymous_variant 0.93
rpsA 1834384 c.843A>G synonymous_variant 0.84
rpsA 1834396 c.855G>C synonymous_variant 0.87
rpsA 1834397 p.His286Val missense_variant 0.94
rpsA 1834408 c.867C>G synonymous_variant 0.9
rpsA 1834411 c.870T>G synonymous_variant 0.97
rpsA 1834423 c.882G>T synonymous_variant 0.9
rpsA 1834432 c.891G>C synonymous_variant 0.84
rpsA 1834447 c.906C>G synonymous_variant 0.85
rpsA 1834451 c.910_912delTTGinsCTC synonymous_variant 0.91
rpsA 1834456 c.915T>C synonymous_variant 0.86
rpsA 1834465 c.924T>C synonymous_variant 0.91
rpsA 1834468 c.927A>G synonymous_variant 0.92
rpsA 1834489 c.948T>C synonymous_variant 0.97
rpsA 1834501 c.960G>C synonymous_variant 0.91
rpsA 1834519 c.978G>C synonymous_variant 0.94
rpsA 1834528 c.987T>G synonymous_variant 0.97
rpsA 1834534 c.993C>G synonymous_variant 0.97
rpsA 1834537 p.Glu332Asp missense_variant 0.96
rpsA 1834540 c.999G>C synonymous_variant 0.96
rpsA 1834543 c.1002C>G synonymous_variant 0.96
rpsA 1834546 c.1005T>C synonymous_variant 0.96
rpsA 1834552 c.1011G>C synonymous_variant 0.96
rpsA 1834555 c.1014T>C synonymous_variant 0.96
rpsA 1834556 p.Ala339Thr missense_variant 0.96
rpsA 1834565 p.Asp342Gln missense_variant 0.97
rpsA 1834600 c.1059G>C synonymous_variant 0.97
rpsA 1834606 c.1065C>T synonymous_variant 0.97
rpsA 1834609 c.1068T>C synonymous_variant 0.97
rpsA 1834618 c.1077G>C synonymous_variant 0.97
rpsA 1834619 c.1078T>C synonymous_variant 0.97
rpsA 1834624 c.1083G>C synonymous_variant 0.97
rpsA 1834633 c.1092A>G synonymous_variant 0.96
rpsA 1834636 c.1095C>G synonymous_variant 0.96
rpsA 1834637 p.Asn366Asp missense_variant 0.96
rpsA 1834666 c.1125G>C synonymous_variant 1.0
rpsA 1834667 p.Ala376Ser missense_variant 1.0
rpsA 1834688 c.1147_1149delAGTinsTCC synonymous_variant 1.0
rpsA 1834720 c.1179C>G synonymous_variant 1.0
tlyA 1917972 c.33A>G synonymous_variant 1.0
katG 2154724 p.Arg463Leu missense_variant 1.0
PPE35 2167926 p.Leu896Ser missense_variant 1.0
Rv1979c 2223293 c.-129A>G upstream_gene_variant 1.0
pncA 2288856 p.Asp129Gly missense_variant 0.2
kasA 2519132 c.1018_1019insTCG disruptive_inframe_insertion 0.5
kasA 2519142 p.Leu343Gln missense_variant 0.5
kasA 2519143 c.1030_1033delGGCC frameshift_variant 0.67
kasA 2519150 c.1037_1039delCGA disruptive_inframe_deletion 0.67
eis 2714526 c.805_806delAC frameshift_variant 1.0
pepQ 2860044 c.375C>T synonymous_variant 0.25
thyX 3067722 p.His75Leu missense_variant 0.29
thyX 3067963 c.-18G>A upstream_gene_variant 0.22
thyA 3073827 c.645A>G synonymous_variant 0.21
thyA 3073839 c.633T>C synonymous_variant 0.44
thyA 3073860 c.612C>G synonymous_variant 0.61
thyA 3073863 c.609T>C synonymous_variant 0.69
thyA 3073872 p.Ile200Val missense_variant 0.69
thyA 3073888 p.Ser195Glu missense_variant 0.67
thyA 3073892 c.580T>C synonymous_variant 0.67
thyA 3073896 c.576C>G synonymous_variant 0.67
thyA 3073902 p.Ala190Gln missense_variant 0.62
thyA 3073908 p.Met188Phe missense_variant 0.62
thyA 3073925 c.547T>C synonymous_variant 0.53
thyA 3073929 c.543T>C synonymous_variant 0.53
thyA 3073932 c.540C>T synonymous_variant 0.53
thyA 3073956 c.516G>C synonymous_variant 0.5
thyA 3073959 c.513T>C synonymous_variant 0.5
thyA 3073964 p.Leu170Met missense_variant 0.53
thyA 3073968 c.504C>G synonymous_variant 0.53
thyA 3073977 c.495A>G synonymous_variant 0.36
ald 3086788 c.-32T>C upstream_gene_variant 1.0
ald 3087159 p.Ser114Pro missense_variant 0.67
fprA 3473848 c.-158delA upstream_gene_variant 0.4
fprA 3473996 c.-11_-10insA upstream_gene_variant 1.0
Rv3236c 3612813 p.Thr102Ala missense_variant 1.0
alr 3840529 p.Thr298Ser missense_variant 0.5
rpoA 3878067 c.441C>G synonymous_variant 0.67
rpoA 3878070 c.438T>C synonymous_variant 0.67
rpoA 3878082 c.426T>C synonymous_variant 1.0
rpoA 3878103 c.405A>G synonymous_variant 1.0
rpoA 3878106 c.402G>C synonymous_variant 1.0
rpoA 3878118 c.390T>C synonymous_variant 1.0
clpC1 4038554 p.Ile717Val missense_variant 0.6
clpC1 4038623 c.2082A>G synonymous_variant 0.18
clpC1 4038704 c.2001T>C synonymous_variant 0.62
clpC1 4038707 c.1998C>G synonymous_variant 0.62
clpC1 4038713 c.1992T>C synonymous_variant 0.74
clpC1 4038719 c.1986G>C synonymous_variant 0.76
clpC1 4038740 c.1965G>C synonymous_variant 0.88
clpC1 4038743 p.Thr654Val missense_variant 0.88
clpC1 4038749 c.1956C>G synonymous_variant 0.91
clpC1 4038755 c.1950G>C synonymous_variant 0.91
clpC1 4038767 c.1938G>T synonymous_variant 0.93
clpC1 4038773 c.1932T>C synonymous_variant 0.93
clpC1 4038782 c.1923G>C synonymous_variant 0.94
clpC1 4038788 c.1917G>C synonymous_variant 0.95
clpC1 4038791 c.1914G>C synonymous_variant 0.95
clpC1 4038794 p.Ser637Thr missense_variant 0.95
clpC1 4038812 c.1893T>C synonymous_variant 0.96
clpC1 4038815 c.1890G>C synonymous_variant 0.97
clpC1 4038836 c.1869G>C synonymous_variant 0.98
clpC1 4038842 c.1863G>C synonymous_variant 0.98
clpC1 4038845 c.1858_1860delTCGinsAGC synonymous_variant 0.98
clpC1 4038860 c.1845G>T synonymous_variant 0.98
clpC1 4038863 c.1842G>C synonymous_variant 0.98
clpC1 4038872 c.1833C>G synonymous_variant 0.96
clpC1 4038878 c.1827A>G synonymous_variant 0.96
clpC1 4038890 p.Glu605Asp missense_variant 0.95
clpC1 4038905 c.1800A>G synonymous_variant 0.94
clpC1 4038911 c.1794G>C synonymous_variant 0.94
clpC1 4038923 c.1782A>C synonymous_variant 0.92
clpC1 4038926 c.1779G>T synonymous_variant 0.91
clpC1 4038929 c.1776G>C synonymous_variant 0.95
clpC1 4038932 c.1773G>C synonymous_variant 0.95
clpC1 4038935 c.1770C>G synonymous_variant 0.95
clpC1 4038941 c.1764G>C synonymous_variant 0.95
clpC1 4038953 c.1752A>G synonymous_variant 0.95
clpC1 4038965 c.1740T>C synonymous_variant 0.75
clpC1 4038971 c.1734T>C synonymous_variant 0.75
clpC1 4038974 c.1731T>C synonymous_variant 0.75
clpC1 4039142 c.1563A>G synonymous_variant 0.57
clpC1 4039145 c.1560G>C synonymous_variant 0.67
clpC1 4039154 c.1551G>C synonymous_variant 0.67
clpC1 4039169 p.Glu512Asp missense_variant 0.67
clpC1 4039172 c.1533A>G synonymous_variant 0.67
clpC1 4039178 c.1527G>C synonymous_variant 0.75
clpC1 4039183 c.1522T>C synonymous_variant 0.86
clpC1 4039184 c.1521G>C synonymous_variant 0.86
clpC1 4039187 c.1518G>T synonymous_variant 0.86
clpC1 4039192 p.Thr505Ser missense_variant 0.67
clpC1 4039195 p.Thr504Ser missense_variant 0.5
clpC1 4039199 p.Ala502Glu missense_variant 0.5
clpC1 4039205 c.1500C>G synonymous_variant 0.5
clpC1 4039216 p.Phe497Val missense_variant 0.5
clpC1 4039217 c.1488G>C synonymous_variant 0.5
clpC1 4039220 c.1485G>C synonymous_variant 0.5
clpC1 4039226 c.1479T>C synonymous_variant 0.46
clpC1 4039241 c.1464G>C synonymous_variant 0.4
clpC1 4039262 p.Asp481Glu missense_variant 0.31
clpC1 4039265 p.Asp480Gly missense_variant 0.31
clpC1 4039575 c.1128_1129delTG frameshift_variant 0.5
clpC1 4039586 c.1119G>C synonymous_variant 0.84
clpC1 4039610 c.1095G>C synonymous_variant 0.9
clpC1 4039616 c.1089G>C synonymous_variant 0.97
clpC1 4039639 p.Ile356Val missense_variant 0.97
clpC1 4039645 p.His354Asp missense_variant 0.97
clpC1 4039654 p.Thr351Ser missense_variant 0.97
clpC1 4039661 p.Gly348Pro missense_variant 1.0
clpC1 4039670 c.1035G>C synonymous_variant 1.0
clpC1 4039673 c.1032G>C synonymous_variant 0.97
clpC1 4039682 c.1023C>G synonymous_variant 0.97
clpC1 4039691 c.1014G>C synonymous_variant 1.0
clpC1 4039694 c.1011G>C synonymous_variant 0.97
clpC1 4039714 p.Tyr331His missense_variant 0.96
clpC1 4039718 c.987C>G synonymous_variant 1.0
clpC1 4039724 c.981A>G synonymous_variant 0.91
clpC1 4039727 p.Asp326Glu missense_variant 0.86
clpC1 4039730 c.975C>G synonymous_variant 0.86
clpC1 4039736 c.969C>G synonymous_variant 0.78
clpC1 4039739 c.966C>G synonymous_variant 0.78
clpC1 4039742 c.963C>T synonymous_variant 0.78
clpC1 4039748 c.957G>C synonymous_variant 0.78
clpC1 4039751 c.954A>G synonymous_variant 0.82
clpC1 4039757 c.948A>G synonymous_variant 0.82
clpC1 4039766 c.939T>C synonymous_variant 0.8
clpC1 4039778 c.927A>G synonymous_variant 0.4
clpC1 4039781 c.924G>C synonymous_variant 0.4
clpC1 4039787 c.916_918delTCGinsAGC synonymous_variant 0.4
clpC1 4039790 c.915C>G synonymous_variant 0.4
clpC1 4039805 c.900C>T synonymous_variant 0.5
clpC1 4039811 c.894C>G synonymous_variant 0.5
clpC1 4039817 c.888A>C synonymous_variant 0.5
clpC1 4039820 c.885T>G synonymous_variant 0.5
clpC1 4039823 c.882T>C synonymous_variant 0.5
clpC1 4039829 c.874_876delTTGinsCTC synonymous_variant 0.5
clpC1 4039838 p.Leu289Ile missense_variant 0.43
clpC1 4039850 c.855T>C synonymous_variant 0.69
clpC1 4039865 c.840T>C synonymous_variant 0.82
clpC1 4039871 p.Thr278Gln missense_variant 0.82
clpC1 4039898 c.807C>G synonymous_variant 0.73
clpC1 4039901 c.804C>G synonymous_variant 0.75
clpC1 4039904 c.801A>G synonymous_variant 0.75
clpC1 4039919 c.786C>G synonymous_variant 0.75
clpC1 4039925 c.780C>T synonymous_variant 0.75
clpC1 4039929 c.775_776delAGinsTC synonymous_variant 0.75
clpC1 4039931 c.774T>G synonymous_variant 0.75
clpC1 4039934 c.771G>C synonymous_variant 0.75
clpC1 4039937 c.768G>C synonymous_variant 0.75
clpC1 4039940 c.765G>C synonymous_variant 0.75
clpC1 4039946 c.759A>C synonymous_variant 0.75
clpC1 4039949 c.756G>C synonymous_variant 0.75
clpC1 4039952 c.753T>C synonymous_variant 0.75
clpC1 4039955 c.750G>C synonymous_variant 0.75
clpC1 4039960 p.Thr249Ser missense_variant 0.75
clpC1 4039964 c.741C>G synonymous_variant 0.75
clpC1 4039979 c.726C>G synonymous_variant 0.78
clpC1 4039988 c.717C>G synonymous_variant 0.7
clpC1 4039996 p.Glu237Lys missense_variant 0.62
clpC1 4040063 c.642G>C synonymous_variant 0.33
clpC1 4040066 c.639G>C synonymous_variant 0.33
clpC1 4040279 c.426C>G synonymous_variant 0.57
clpC1 4040291 c.414G>C synonymous_variant 0.79
clpC1 4040300 c.405C>G synonymous_variant 0.69
clpC1 4040311 p.Thr132Ser missense_variant 0.65
clpC1 4040312 c.393G>C synonymous_variant 0.65
clpC1 4040315 p.Glu130Asp missense_variant 0.65
clpC1 4040318 c.387C>G synonymous_variant 0.65
clpC1 4040321 c.384C>G synonymous_variant 0.65
clpC1 4040324 c.381G>C synonymous_variant 0.65
clpC1 4040333 c.372G>C synonymous_variant 0.58
clpC1 4040354 c.351A>G synonymous_variant 0.62
clpC1 4040357 c.348T>C synonymous_variant 0.47
clpC1 4040363 c.342A>C synonymous_variant 0.58
clpC1 4040375 c.330G>C synonymous_variant 0.59
clpC1 4040378 c.325_327delTTGinsCTC synonymous_variant 0.47
clpC1 4040381 c.324T>C synonymous_variant 0.59
clpC1 4040387 c.318A>G synonymous_variant 0.56
clpC1 4040393 c.312G>C synonymous_variant 0.42
clpC1 4040402 p.Asn101Lys missense_variant 0.42
clpC1 4040411 c.294T>C synonymous_variant 0.47
clpC1 4040417 c.288G>C synonymous_variant 0.44
clpC1 4040423 c.282A>G synonymous_variant 0.53
embC 4239872 p.Glu4Lys missense_variant 0.33
embC 4240286 p.Ala142Thr missense_variant 0.29
embA 4242643 c.-590C>T upstream_gene_variant 1.0
embC 4242648 p.Leu929Arg missense_variant 0.33
embA 4243460 c.228C>T synonymous_variant 1.0
embA 4243793 c.561C>T synonymous_variant 0.4
embB 4247963 p.Ala484Thr missense_variant 0.33
embB 4248006 p.Thr498Asn missense_variant 1.0
aftB 4267647 p.Asp397Gly missense_variant 1.0
aftB 4268492 c.345G>A synonymous_variant 0.29
whiB6 4338595 c.-75delG upstream_gene_variant 1.0
gid 4407588 c.615A>G synonymous_variant 1.0
gid 4407927 p.Glu92Asp missense_variant 1.0
gid 4408028 p.Leu59Phe missense_variant 0.5