EBG00000313325 - n.616G>C
Drug resistance types
40 Sensitive
20 RR-TB
25 HR-TB
10 MDR-TB
4 Pre-XDR-TB
0 XDR-TB
68 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage1.2.1.2 | 1 |
| lineage3 | 6 |
| lineage4.9 | 62 |
| lineage4 | 2 |
| La1.8.1 | 4 |
| lineage4.4.1.2 | 1 |
| lineage4.3.4.1 | 2 |
| lineage4.8 | 34 |
| lineage4.3.4.2.1 | 3 |
| lineage2.2.1 | 10 |
| lineage2.2.1;lineage4.9 | 2 |
| lineage2.2.1.1 | 2 |
| lineage4.6.3;lineage4.9 | 1 |
| lineage4.3.2;lineage4.9 | 1 |
| La1.7;M.canetti;lineage4.9 | 1 |
| lineage4.2;lineage4.9 | 1 |
| lineage3.1.2.1;lineage3.1.2.2 | 1 |
| lineage4.4.1.1.1 | 2 |
| lineage6.1.3 | 1 |
| lineage3.1.2.1 | 1 |
| La2;lineage4.9 | 1 |
| lineage4.4.1.1 | 2 |
| lineage1.1.1 | 1 |
| lineage4.8.1 | 1 |
| La1.3 | 1 |
| lineage3.1.2.2 | 1 |
| lineage2.2.1;lineage4.5 | 1 |
| La1.6;M.canetti;lineage4.8.1;lineage4.9;lineage6.3 | 1 |
| La2;lineage4.9;lineage9 | 1 |
| lineage4.1.2;lineage4.9 | 1 |
| La1.2 | 1 |
| lineage4.1.1.3 | 1 |
| lineage4.9;lineage9 | 2 |
| lineage4.1.2.1 | 3 |
| lineage2.1;lineage4.1.4;lineage4.9 | 1 |
| La1.7;lineage4.9 | 1 |
| M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | 1 |
| lineage4.9;lineage6.3 | 1 |
| M.canetti;lineage4.2;lineage4.9 | 1 |
| lineage4.2.2.2 | 1 |
| lineage4.6.5 | 2 |
| lineage2.2.1;lineage4 | 1 |
| lineage2.2;lineage4.9 | 1 |
| La1.7;lineage3.1;lineage4 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 167 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR20969475 | Other | lineage1.2.1.2 | None | SRR5341267 | Pre-XDR-TB | lineage3 | None | SRR1183054 | Sensitive | lineage4.9 | None | SRR1180977 | Sensitive | lineage4.9 | None | SRR5818448 | Other | lineage4.9 | None | SRR1181349 | Sensitive | lineage4 | None | ERR4819877 | HR-TB | lineage4.9 | None | ERR4820193 | Other | lineage3 | None | ERR4816478 | HR-TB | lineage4 | None | ERR4769493 | Other | lineage4.9 | None | ERR4816656 | Other | lineage4.9 | None | ERR4818831 | Other | lineage3 | None | SRR7236330 | Other | La1.8.1 | None | ERR323056 | HR-TB | lineage4.4.1.2 | None | SRR1175512 | Sensitive | lineage4.9 | None | ERR11465352 | Sensitive | lineage4.3.4.1 | None | SRR1180399 | Sensitive | lineage4.9 | None | ERR911929 | Other | lineage4.8 | None | SRR1183111 | HR-TB | lineage4.9 | None | ERR11465511 | Other | lineage4.3.4.2.1 | None | SRR5818408 | Other | lineage4.9 | None | SRR1183144 | Other | lineage2.2.1 | None | SRR1181390 | Sensitive | lineage2.2.1;lineage4.9 | None | SRR1183106 | RR-TB | lineage2.2.1.1 | None | DRR034348 | Other | lineage2.2.1 | None | SAMEA3501070 | RR-TB | lineage4.8 | None | ERR11465510 | Sensitive | lineage4.3.4.2.1 | None | SAMEA3501067 | RR-TB | lineage4.8 | None | SRR26159047 | Other | lineage4.6.3;lineage4.9 | None | ERR9786076 | Sensitive | lineage3 | None | SRR1180355 | Sensitive | lineage4.9 | None | ERR736865 | HR-TB | lineage4.3.2;lineage4.9 | None | ERR736835 | HR-TB | La1.7;M.canetti;lineage4.9 | None | ERR978694 | Other | lineage4.8 | None | SRR18003031 | HR-TB | lineage2.2.1 | None | SRR5818424 | Sensitive | lineage4.9 | None | SRR5818388 | Other | lineage4.9 | None | SRR5818428 | Sensitive | lineage4.9 | None | SRR5818455 | Sensitive | lineage4.9 | None | SRR5818470 | Other | lineage4.9 | None | SRR6045832 | Other | lineage4.9 | None | ERR4819241 | Other | lineage4.9 | None | ERR4828872 | Sensitive | lineage4.2;lineage4.9 | None | SAMEA3501063 | RR-TB | lineage4.8 | None | SRR1175506 | Sensitive | lineage4.9 | None | ERR4769439 | HR-TB | lineage4.9 | None | ERR978755 | RR-TB | lineage4.8 | None | ERR911929_ERR911930 | Other | lineage4.8 | None | SRR5818414 | Other | lineage4.9 | None | ERR987729 | HR-TB | lineage3.1.2.1;lineage3.1.2.2 | None | SRR1181215 | Sensitive | lineage4.4.1.1.1 | None | ERR9787336 | RR-TB | lineage6.1.3 | None | SRR1180444 | Sensitive | lineage4.9 | None | SRR22424765 | HR-TB | lineage4.8 | None | ERR4815022 | Other | lineage3.1.2.1 | None | ERR4820773 | HR-TB | lineage4.9 | None | ERR323039 | HR-TB | La2;lineage4.9 | None | SRR18909918 | Other | lineage2.2.1.1 | None | SRR7236374 | Other | La1.8.1 | None | SAMEA3501015 | Other | lineage4.8 | None | ERR5917972 | MDR-TB | lineage4.4.1.1 | za | SRR21658550 | Other | lineage1.1.1 | None | ERR2446509 | Other | lineage3 | nl | ERR978761_ERR978762_ERR978760 | RR-TB | lineage4.8 | None | SRR9971150 | RR-TB | lineage4.8.1 | None | SAMEA3501065 | RR-TB | lineage4.8 | None | SRR5818399 | Sensitive | lineage4.9 | None | SRR5818386 | Other | lineage4.9 | None | SRR6045219 | HR-TB | lineage4.9 | None | ERR4816852 | Other | lineage4.9 | None | ERR4769495 | Other | La1.3 | None | ERR4798648 | MDR-TB | lineage3.1.2.2 | None | ERR4811035 | Pre-XDR-TB | lineage2.2.1;lineage4.5 | None | SRR6046644 | HR-TB | La1.6;M.canetti;lineage4.8.1;lineage4.9;lineage6.3 | None | SAMEA3450033 | Other | lineage4.8 | None | ERR323053 | MDR-TB | La2;lineage4.9;lineage9 | None | SRR1180319 | Sensitive | lineage4.9 | None | SRR5818425 | Other | lineage4.9 | None | SRR1180172 | Other | lineage2.2.1 | None | SRR1180413 | Sensitive | lineage4.9 | None | ERR978726_ERR978727 | RR-TB | lineage4.8 | None | SRR6982246 | Sensitive | lineage4.1.2;lineage4.9 | None | SAMEA3501052 | RR-TB | lineage4.8 | None | SAMEA3501046 | RR-TB | lineage4.8 | None | ERR4769418 | Other | La1.2 | None | SRR11349145 | Pre-XDR-TB | lineage4.4.1.1.1 | None | SRR5818389 | Other | lineage4.9 | None | SRR6046141 | Other | lineage4.9 | None | ERR4815310 | Other | lineage2.2.1;lineage4.9 | None | SRR1175513 | Sensitive | lineage4.9 | None | SRR1180410 | Sensitive | lineage4.9 | None | ERR4769444 | HR-TB | lineage4.9 | None | SRR1172310 | HR-TB | lineage4.9 | None | ERR4769417 | Pre-XDR-TB | lineage4.9 | None | SRR7069922 | Other | lineage2.2.1 | None | ERR978746_ERR978747_ERR978748 | RR-TB | lineage4.8 | None | SRR1180300 | Sensitive | lineage4.9 | None | SRR1180391 | Sensitive | lineage4.9 | None | SRR6982239 | Sensitive | lineage4.1.1.3 | None | SRR6045267 | RR-TB | lineage4.8 | None | ERR978762 | Other | lineage4.8 | None | SRR1174897 | MDR-TB | lineage4.9;lineage9 | None | SRR5818647 | Other | lineage4.3.4.2.1 | None | ERR978748 | Other | lineage4.8 | None | SRR5341470 | MDR-TB | lineage4.9;lineage9 | None | ERR6866125 | Sensitive | lineage4.1.2.1 | None | ERR3797036 | HR-TB | lineage2.1;lineage4.1.4;lineage4.9 | None | ERR6359074 | HR-TB | lineage4.9 | None | SRR5818464 | Other | lineage4.9 | None | ERR4817731 | HR-TB | lineage4.9 | None | ERR6358951 | Sensitive | lineage4.9 | None | ERR978747 | Other | lineage4.8 | None | SRR26937107 | MDR-TB | lineage2.2.1 | None | SRR5818398 | Other | lineage4.9 | None | ERR11465353 | Sensitive | lineage4.3.4.1 | None | ERR2514215 | Other | lineage2.2.1 | gb | ERR978734_ERR978733_ERR978735 | RR-TB | lineage4.8 | None | ERR978735 | Other | lineage4.8 | None | SRR29096174 | Sensitive | La1.7;lineage4.9 | None | SRR26936983 | MDR-TB | lineage2.2.1 | None | ERR4800527 | MDR-TB | lineage2.2.1 | None | SRR5818452 | Other | lineage4.9 | None | ERR978757 | RR-TB | lineage4.8 | None | ERR4769442 | Sensitive | lineage4.9 | None | ERR978734 | RR-TB | lineage4.8 | None | SRR1180226 | HR-TB | lineage4.9 | None | SRR7069391 | Other | lineage4.9 | None | ERR4819422 | HR-TB | lineage4.9 | None | SRR12420628 | MDR-TB | lineage2.2.1 | None | SRR6045555 | Other | lineage4.9 | None | SRR6046397 | Other | M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | None | SRR1180312 | Sensitive | lineage4.9 | None | ERR978727 | Other | lineage4.8 | None | ERR502524 | HR-TB | lineage4.9;lineage6.3 | None | ERR2503533 | Other | lineage4.1.2.1 | fi | SRR5818459 | Other | lineage4.9 | None | ERR3275190 | Other | lineage3 | nl | ERR978751 | Other | lineage4.8 | None | SRR21240055 | Other | lineage4.1.2.1 | None | ERR4816322 | Other | lineage4.9 | None | SRR1181325 | Sensitive | lineage4.9 | None | ERR4816868 | Other | lineage4.4.1.1 | None | SRR1180406 | Sensitive | lineage4.9 | None | SRR3675571 | HR-TB | M.canetti;lineage4.2;lineage4.9 | None | ERR978761 | Other | lineage4.8 | None | SRR7236399 | Other | La1.8.1 | None | SRR7069931 | Other | lineage4.2.2.2 | None | SRR1180375 | Sensitive | lineage4.9 | None | ERR978694_ERR978693 | Other | lineage4.8 | None | ERR978756 | Other | lineage4.8 | None | SRR5818394 | Other | lineage4.9 | None | SRR5818415 | Sensitive | lineage4.9 | None | SRR7617847 | Other | La1.8.1 | None | ERR7801175 | HR-TB | lineage4.6.5 | None | ERR7801176 | RR-TB | lineage4.6.5 | None | SRR1181237 | Sensitive | lineage2.2.1;lineage4 | None | ERR978752 | Other | lineage4.8 | None | SRR5818400 | Other | lineage4.9 | None | ERR4815550 | Other | lineage2.2;lineage4.9 | None | SRR1175487 | Sensitive | lineage4.9 | None | ERR978750_ERR978752_ERR978751 | RR-TB | lineage4.8 | None | SRR10315751 | MDR-TB | lineage4.8 | None | ERR978755_ERR978756_ERR978754_ERR978757 | RR-TB | lineage4.8 | None | SRR1180420 | Sensitive | lineage4.9 | None | ERR405219 | HR-TB | La1.7;lineage3.1;lineage4 | None | SRR1181283 | Sensitive | lineage4.9 | None | ERR911930 | Other | lineage4.8 | None |
|---|
