Run ID: SRR5818459
Sample name:
Date: 04-04-2023 11:32:08
Number of reads: 330454
Percentage reads mapped: 88.73
Strain: lineage4.9
Drug-resistance: Other
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.9 | Euro-American (H37Rv-like) | T1 | None | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|---|---|---|---|---|
rrs | 1472644 | n.799C>T | non_coding_transcript_exon_variant | 0.69 | streptomycin |
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 6454 | c.-848C>T | upstream_gene_variant | 0.76 |
gyrA | 6721 | c.-581C>T | upstream_gene_variant | 0.74 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
rpoB | 760461 | p.Arg219Cys | missense_variant | 0.24 |
mmpR5 | 779096 | p.Ala36Val | missense_variant | 0.22 |
mmpL5 | 779283 | c.-803G>A | upstream_gene_variant | 0.4 |
mmpL5 | 779295 | c.-815A>G | upstream_gene_variant | 0.41 |
mmpR5 | 779431 | p.Asn148Gln | missense_variant | 0.34 |
mmpL5 | 779472 | c.-992G>A | upstream_gene_variant | 0.32 |
mmpS5 | 779523 | c.-618T>A | upstream_gene_variant | 0.35 |
mmpS5 | 779538 | c.-633A>C | upstream_gene_variant | 0.38 |
mmpS5 | 779539 | c.-634C>A | upstream_gene_variant | 0.38 |
rplC | 801267 | c.459A>G | synonymous_variant | 0.51 |
rrs | 1472018 | n.173G>A | non_coding_transcript_exon_variant | 0.22 |
rrs | 1472048 | n.203T>C | non_coding_transcript_exon_variant | 0.2 |
rrs | 1472119 | n.274G>A | non_coding_transcript_exon_variant | 0.87 |
rrs | 1472150 | n.305T>A | non_coding_transcript_exon_variant | 0.96 |
rrs | 1472172 | n.327T>C | non_coding_transcript_exon_variant | 0.98 |
rrs | 1472251 | n.406G>A | non_coding_transcript_exon_variant | 0.99 |
rrs | 1472282 | n.437T>G | non_coding_transcript_exon_variant | 0.19 |
rrs | 1472285 | n.440A>G | non_coding_transcript_exon_variant | 0.7 |
rrs | 1472286 | n.441C>A | non_coding_transcript_exon_variant | 0.87 |
rrs | 1472289 | n.444T>G | non_coding_transcript_exon_variant | 0.93 |
rrs | 1472290 | n.445C>G | non_coding_transcript_exon_variant | 0.93 |
rrs | 1472297 | n.453_461delGTCCGGGTT | non_coding_transcript_exon_variant | 0.92 |
rrs | 1472309 | n.464C>T | non_coding_transcript_exon_variant | 0.91 |
rrs | 1472311 | n.466C>T | non_coding_transcript_exon_variant | 0.88 |
rrs | 1472312 | n.468_470delGAT | non_coding_transcript_exon_variant | 0.89 |
rrs | 1472324 | n.479G>C | non_coding_transcript_exon_variant | 0.89 |
rrs | 1472325 | n.480G>C | non_coding_transcript_exon_variant | 0.89 |
rrs | 1472328 | n.483G>C | non_coding_transcript_exon_variant | 0.66 |
rrs | 1472328 | n.483G>T | non_coding_transcript_exon_variant | 0.83 |
rrs | 1472330 | n.485G>T | non_coding_transcript_exon_variant | 0.62 |
rrs | 1472338 | n.493A>G | non_coding_transcript_exon_variant | 0.24 |
rrs | 1472344 | n.499C>T | non_coding_transcript_exon_variant | 0.94 |
rrs | 1472379 | n.534T>C | non_coding_transcript_exon_variant | 0.53 |
rrs | 1472400 | n.555C>T | non_coding_transcript_exon_variant | 0.51 |
rrs | 1472416 | n.571C>T | non_coding_transcript_exon_variant | 0.39 |
rrs | 1472422 | n.577T>C | non_coding_transcript_exon_variant | 0.3 |
rrs | 1472435 | n.590T>C | non_coding_transcript_exon_variant | 0.97 |
rrs | 1472438 | n.593T>C | non_coding_transcript_exon_variant | 0.97 |
rrs | 1472439 | n.594C>T | non_coding_transcript_exon_variant | 0.94 |
rrs | 1472447 | n.602C>T | non_coding_transcript_exon_variant | 0.93 |
rrs | 1472448 | n.603T>C | non_coding_transcript_exon_variant | 0.95 |
rrs | 1472450 | n.605A>G | non_coding_transcript_exon_variant | 0.96 |
rrs | 1472451 | n.606C>G | non_coding_transcript_exon_variant | 0.97 |
rrs | 1472461 | n.616G>C | non_coding_transcript_exon_variant | 0.93 |
rrs | 1472462 | n.617T>C | non_coding_transcript_exon_variant | 0.94 |
rrs | 1472464 | n.619A>G | non_coding_transcript_exon_variant | 0.97 |
rrs | 1472471 | n.626G>A | non_coding_transcript_exon_variant | 0.94 |
rrs | 1472476 | n.631A>G | non_coding_transcript_exon_variant | 0.18 |
rrs | 1472489 | n.644A>T | non_coding_transcript_exon_variant | 0.53 |
rrs | 1472494 | n.649A>G | non_coding_transcript_exon_variant | 0.99 |
rrs | 1472496 | n.651T>A | non_coding_transcript_exon_variant | 0.45 |
rrs | 1472498 | n.653C>T | non_coding_transcript_exon_variant | 0.99 |
rrs | 1472569 | n.724G>A | non_coding_transcript_exon_variant | 0.65 |
rrs | 1472581 | n.736A>T | non_coding_transcript_exon_variant | 0.84 |
rrs | 1472597 | n.752G>A | non_coding_transcript_exon_variant | 0.72 |
rrs | 1472607 | n.762G>A | non_coding_transcript_exon_variant | 0.71 |
rrs | 1472655 | n.810G>T | non_coding_transcript_exon_variant | 0.8 |
rrs | 1472660 | n.815T>C | non_coding_transcript_exon_variant | 0.78 |
rrs | 1472692 | n.847T>C | non_coding_transcript_exon_variant | 0.73 |
rrs | 1472714 | n.869A>G | non_coding_transcript_exon_variant | 0.72 |
rrs | 1472755 | n.910G>A | non_coding_transcript_exon_variant | 0.42 |
rrl | 1475937 | n.2280A>T | non_coding_transcript_exon_variant | 0.43 |
rrl | 1475943 | n.2286G>A | non_coding_transcript_exon_variant | 0.77 |
rrl | 1475945 | n.2288C>A | non_coding_transcript_exon_variant | 0.47 |
rrl | 1475952 | n.2295A>G | non_coding_transcript_exon_variant | 0.76 |
rrl | 1475963 | n.2306G>T | non_coding_transcript_exon_variant | 0.31 |
rrl | 1475970 | n.2313C>T | non_coding_transcript_exon_variant | 0.72 |
rrl | 1475975 | n.2318C>T | non_coding_transcript_exon_variant | 0.58 |
rrl | 1475977 | n.2320A>G | non_coding_transcript_exon_variant | 0.56 |
rrl | 1475978 | n.2321C>T | non_coding_transcript_exon_variant | 0.29 |
rrl | 1475988 | n.2331A>G | non_coding_transcript_exon_variant | 0.68 |
rrl | 1475993 | n.2336C>T | non_coding_transcript_exon_variant | 0.3 |
rrl | 1475995 | n.2338G>T | non_coding_transcript_exon_variant | 0.21 |
rrl | 1475997 | n.2340A>T | non_coding_transcript_exon_variant | 0.32 |
rrl | 1475998 | n.2341C>T | non_coding_transcript_exon_variant | 0.58 |
rrl | 1476001 | n.2344T>C | non_coding_transcript_exon_variant | 0.55 |
rrl | 1476040 | n.2383C>T | non_coding_transcript_exon_variant | 0.29 |
rrl | 1476045 | n.2388G>T | non_coding_transcript_exon_variant | 0.33 |
rrl | 1476047 | n.2390G>T | non_coding_transcript_exon_variant | 0.31 |
rrl | 1476049 | n.2392C>T | non_coding_transcript_exon_variant | 0.35 |
rrl | 1476110 | n.2453G>C | non_coding_transcript_exon_variant | 0.39 |
rrl | 1476113 | n.2456T>G | non_coding_transcript_exon_variant | 0.49 |
rrl | 1476131 | n.2474C>T | non_coding_transcript_exon_variant | 0.73 |
rrl | 1476164 | n.2507A>G | non_coding_transcript_exon_variant | 0.61 |
rrl | 1476164 | n.2507A>T | non_coding_transcript_exon_variant | 0.82 |
rrl | 1476179 | n.2522C>T | non_coding_transcript_exon_variant | 0.76 |
rrl | 1476194 | n.2537A>G | non_coding_transcript_exon_variant | 0.57 |
rrl | 1476194 | n.2537A>T | non_coding_transcript_exon_variant | 0.79 |
rrl | 1476200 | n.2543A>T | non_coding_transcript_exon_variant | 0.83 |
rrl | 1476204 | n.2547C>T | non_coding_transcript_exon_variant | 0.72 |
rrl | 1476207 | n.2550T>C | non_coding_transcript_exon_variant | 0.59 |
rrl | 1476214 | n.2557G>T | non_coding_transcript_exon_variant | 0.74 |
rrl | 1476215 | n.2558C>T | non_coding_transcript_exon_variant | 0.87 |
rrl | 1476224 | n.2567A>G | non_coding_transcript_exon_variant | 0.86 |
rrl | 1476235 | n.2578A>G | non_coding_transcript_exon_variant | 0.45 |
rrl | 1476245 | n.2588C>T | non_coding_transcript_exon_variant | 0.27 |
rrl | 1476252 | n.2595T>G | non_coding_transcript_exon_variant | 0.8 |
rrl | 1476256 | n.2599A>G | non_coding_transcript_exon_variant | 0.8 |
rrl | 1476260 | n.2603A>G | non_coding_transcript_exon_variant | 0.82 |
rrl | 1476267 | n.2610G>T | non_coding_transcript_exon_variant | 0.59 |
rrl | 1476276 | n.2619C>A | non_coding_transcript_exon_variant | 0.43 |
rrl | 1476279 | n.2622G>A | non_coding_transcript_exon_variant | 0.41 |
rrl | 1476281 | n.2624T>C | non_coding_transcript_exon_variant | 0.7 |
rrl | 1476294 | n.2637A>G | non_coding_transcript_exon_variant | 0.36 |
rrl | 1476295 | n.2638C>G | non_coding_transcript_exon_variant | 0.31 |
rrl | 1476296 | n.2639C>T | non_coding_transcript_exon_variant | 0.32 |
rrl | 1476297 | n.2640C>A | non_coding_transcript_exon_variant | 0.31 |
rrl | 1476299 | n.2642C>G | non_coding_transcript_exon_variant | 0.31 |
rrl | 1476300 | n.2643G>T | non_coding_transcript_exon_variant | 0.31 |
rrl | 1476301 | n.2644A>T | non_coding_transcript_exon_variant | 0.32 |
rrl | 1476308 | n.2651G>C | non_coding_transcript_exon_variant | 0.31 |
rrl | 1476311 | n.2654G>C | non_coding_transcript_exon_variant | 0.31 |
rrl | 1476312 | n.2655T>C | non_coding_transcript_exon_variant | 0.32 |
rrl | 1476337 | n.2680C>T | non_coding_transcript_exon_variant | 0.31 |
rrl | 1476507 | n.2850C>T | non_coding_transcript_exon_variant | 0.27 |
rrl | 1476583 | n.2926G>C | non_coding_transcript_exon_variant | 0.23 |
rrl | 1476597 | n.2940G>A | non_coding_transcript_exon_variant | 0.2 |
rrl | 1476619 | n.2962C>T | non_coding_transcript_exon_variant | 0.29 |
inhA | 1674816 | c.615T>C | synonymous_variant | 0.88 |
tlyA | 1917812 | c.-128G>A | upstream_gene_variant | 0.65 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
tlyA | 1918200 | c.261G>A | synonymous_variant | 0.39 |
pncA | 2289047 | c.195C>T | synonymous_variant | 0.28 |
pncA | 2289104 | c.138A>G | synonymous_variant | 0.71 |
embB | 4247590 | c.1077A>G | synonymous_variant | 0.98 |
embB | 4247646 | p.Glu378Ala | missense_variant | 0.98 |
embB | 4247815 | c.1302C>T | synonymous_variant | 0.98 |
ethA | 4326463 | c.1011C>T | synonymous_variant | 0.99 |
ethA | 4326740 | p.Arg245His | missense_variant | 0.92 |
ethA | 4326764 | p.Ala237Val | missense_variant | 0.98 |
ethA | 4326779 | p.Thr232Ile | missense_variant | 0.99 |
ethA | 4327392 | p.Pro28Ser | missense_variant | 1.0 |
ethA | 4327477 | c.-4A>G | upstream_gene_variant | 0.25 |
gid | 4407588 | c.615A>G | synonymous_variant | 0.99 |
gid | 4407886 | p.Thr106Ile | missense_variant | 0.32 |
gid | 4408185 | c.18C>T | synonymous_variant | 0.96 |