EBG00000313339 - n.2550T>C
Drug resistance types
19 Sensitive
39 RR-TB
16 HR-TB
15 MDR-TB
11 Pre-XDR-TB
0 XDR-TB
195 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.3.4.2.1 | 3 |
| lineage2.2.1 | 37 |
| lineage4.3 | 1 |
| lineage4.3.1.1 | 3 |
| lineage3 | 34 |
| lineage1.2.2.2 | 4 |
| lineage4.9 | 37 |
| lineage4.3.3 | 16 |
| lineage4.1.2.1 | 35 |
| lineage2.2.2 | 2 |
| lineage4.8 | 25 |
| lineage1.1.2 | 8 |
| lineage4.4.2 | 3 |
| lineage1.2.2 | 1 |
| lineage4 | 6 |
| lineage4.1.3 | 1 |
| lineage4.5 | 3 |
| lineage4.6.5 | 2 |
| lineage4.1 | 3 |
| lineage4.3.4.2 | 3 |
| lineage5 | 1 |
| lineage4.2.1 | 3 |
| lineage3.1.3 | 1 |
| 8 | |
| lineage4.1.2 | 3 |
| lineage3.1.1 | 3 |
| lineage1.1.3.1 | 4 |
| lineage4.7 | 3 |
| lineage4.6.2.2 | 9 |
| lineage1.1.1 | 1 |
| lineage4.2.1.1 | 1 |
| lineage1 | 2 |
| lineage4.1.1.3 | 2 |
| lineage3.1.2.1 | 1 |
| lineage4.4.1.1 | 7 |
| lineage4.3.2 | 3 |
| lineage4.1.1.3.1 | 2 |
| lineage4.8.2 | 2 |
| lineage4.3.4.1 | 1 |
| lineage3.1.2.2 | 1 |
| lineage3.1.2 | 2 |
| lineage6.1.3 | 1 |
| lineage1.1.3.2 | 1 |
| lineage4.3.2.1 | 1 |
| lineage4.1.1 | 1 |
| lineage4.2.2.2 | 1 |
| lineage5.1.1 | 1 |
| lineage2.2.1.1 | 1 |
| lineage4.3.4 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 295 |
Geographic prevalence
Country level data for this variant is available for 53 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR9117711 | Other | lineage4.3.4.2.1 | None | ERR5864044 | Pre-XDR-TB | lineage2.2.1 | None | ERR9117760 | HR-TB | lineage4.3 | None | ERR9117812 | Other | lineage4.3.1.1 | None | ERR9117763 | HR-TB | lineage3 | None | ERR9117788 | Other | lineage3 | None | ERR9117827 | Other | lineage1.2.2.2 | None | SRR1172282 | Other | lineage4.9 | None | SRR11349191 | Pre-XDR-TB | lineage4.3.3 | None | SRR15276982 | Pre-XDR-TB | lineage3 | None | SRR1735596 | RR-TB | lineage4.9 | None | SRR18002896 | Pre-XDR-TB | lineage2.2.1 | None | SRR18002881 | Pre-XDR-TB | lineage2.2.1 | None | SRR18002903 | Pre-XDR-TB | lineage2.2.1 | None | SRR18002908 | Other | lineage2.2.1 | None | SRR18002930 | MDR-TB | lineage2.2.1 | None | SRR18002909 | MDR-TB | lineage2.2.1 | None | SRR18002941 | RR-TB | lineage2.2.1 | None | SRR18002933 | Other | lineage2.2.1 | None | SRR18002945 | RR-TB | lineage2.2.1 | None | ERR4815165 | Other | lineage4.1.2.1 | None | SRR18002947 | MDR-TB | lineage2.2.1 | None | SRR18002967 | Pre-XDR-TB | lineage2.2.1 | None | SRR18002984 | MDR-TB | lineage2.2.2 | None | SRR18003023 | Other | lineage2.2.1 | None | SRR18003042 | Other | lineage2.2.1 | None | SRR18002954 | Other | lineage2.2.1 | None | SRR18002976 | Other | lineage2.2.1 | None | SRR18002981 | Other | lineage2.2.1 | None | SRR18003027 | Other | lineage2.2.1 | None | ERR4815104 | Other | lineage4.8 | None | ERR4815171 | HR-TB | lineage1.1.2 | None | ERR4814362 | Other | lineage4.8 | None | ERR4815193 | MDR-TB | lineage4.8 | None | ERR4815268 | Other | lineage4.8 | None | ERR4815301 | Other | lineage4.4.2 | None | ERR4815225 | RR-TB | lineage1.2.2 | None | ERR4814312 | Other | lineage4 | None | ERR4815777 | Other | lineage4.9 | None | ERR4815780 | MDR-TB | lineage4.1.3 | None | ERR4814623 | Other | lineage4.8 | None | ERR4815784 | Other | lineage2.2.1 | gb | ERR4815425 | Other | lineage4.5 | gb | ERR4814584 | Sensitive | lineage4.4.2 | None | ERR4814681 | Other | lineage2.2.1 | None | ERR4815452 | Other | lineage4.3.3 | None | ERR1665404 | Pre-XDR-TB | lineage2.2.1 | None | ERR4815467 | Other | lineage3 | None | SRR3675230 | RR-TB | lineage3 | None | ERR4814714 | Other | lineage3 | None | ERR4814745 | Other | lineage4.6.5 | None | ERR4819579 | HR-TB | lineage4.3.3 | None | ERR4814911 | Other | lineage4.3.3 | None | ERR4814841 | Other | lineage4.1 | None | ERR4814763 | Other | lineage2.2.1 | None | ERR4815502 | Other | lineage4.1 | None | ERR4815517 | Other | lineage1.2.2.2 | None | ERR4815005 | Other | lineage4.1.2.1 | None | ERR4814952 | Sensitive | lineage3 | None | ERR4814986 | Other | lineage4.3.4.2 | None | ERR4815898 | Other | lineage3 | None | SAMEA3501073 | RR-TB | lineage4.8 | None | ERR4815053 | Other | lineage4.1.2.1 | gb | ERR4817309 | Other | lineage4.5 | gb | ERR4816954 | Other | lineage4.1.2.1 | None | ERR4815910 | Other | lineage4.1.2.1 | None | ERR4816087 | Other | lineage4.1.2.1 | None | ERR4815919 | Other | lineage4.8 | None | ERR4816967 | RR-TB | lineage5 | None | ERR4815956 | Other | lineage1.1.2 | None | ERR4816968 | Other | lineage4.2.1 | gb | ERR4816232 | Other | lineage4 | None | ERR2027257 | Other | lineage4.1.2.1 | None | ERR2027291 | Sensitive | lineage3.1.3 | None | ERR4816183 | Other | None | ERR4816243 | Sensitive | lineage3 | None | ERR4816270 | Other | lineage4.1.2.1 | None | ERR4817055 | Other | lineage4.1.2.1 | None | ERR4817131 | Pre-XDR-TB | None | ERR4816464 | Other | lineage3 | None | ERR4816510 | Other | lineage4.1.2.1 | None | ERR4816300 | Other | lineage4.1.2.1 | None | ERR4817070 | Other | lineage1.1.2 | None | ERR4816493 | Other | lineage4.1.2.1 | None | ERR4816531 | Other | lineage4.1.2 | None | ERR4817134 | HR-TB | lineage2.2.1 | None | ERR4816549 | Other | lineage2.2.1 | None | ERR2229233 | Sensitive | lineage4 | None | ERR2229234 | RR-TB | lineage4.8 | None | ERR4817398 | Other | lineage3.1.1 | None | ERR4816561 | Sensitive | lineage3 | gb | ERR4817435 | Other | lineage1.1.3.1 | None | ERR4816690 | Other | None | ERR4816696 | Other | lineage3 | None | ERR4816718 | Other | lineage4.1.2.1 | gb | ERR4816610 | RR-TB | lineage4.3.3 | None | ERR4817175 | Other | lineage4.8 | None | ERR4817189 | Other | lineage4.7 | None | ERR4816692 | Other | lineage4.1.2.1 | None | ERR4816691 | Other | lineage4.1.2.1 | gb | ERR4816745 | Pre-XDR-TB | lineage2.2.1 | None | ERR4816800 | Other | lineage4.8 | gb | ERR4816804 | Other | lineage4.1 | None | ERR4817439 | Other | lineage4.6.2.2 | gb | ERR4816831 | Other | lineage4.1.2.1 | None | SRR5818426 | Other | None | ERR4816907 | Other | lineage1.1.1 | None | ERR4816856 | Other | lineage4.1.2.1 | None | ERR4817290 | Other | lineage3 | gb | ERR4817294 | Other | lineage4.1.2 | None | ERR4817665 | Other | lineage4.8 | None | ERR4818980 | Sensitive | lineage4.3.3 | gb | ERR4818655 | Other | lineage4.3.3 | None | ERR4818724 | Other | lineage4.1.2.1 | gb | ERR4817730 | Other | lineage4.2.1.1 | gb | ERR4818691 | Other | lineage4.8 | None | ERR4817874 | Other | lineage3 | None | ERR4818685 | Other | lineage4.6.2.2 | None | ERR4817795 | Other | lineage4.7 | gb | ERR4818988 | Other | lineage1 | None | ERR4816425 | Other | lineage2.2.2 | None | ERR4819002 | HR-TB | lineage4.8 | None | ERR4818752 | Other | lineage3 | None | ERR4817964 | RR-TB | lineage4.1.2.1 | gb | ERR4819007 | Other | lineage2.2.1 | None | ERR4817972 | Other | lineage4.1.1.3 | gb | ERR4819011 | Other | lineage3.1.2.1 | None | ERR2513082 | Other | lineage4.1.2.1 | gb | ERR4819017 | RR-TB | lineage3 | None | ERR4818064 | Other | lineage4.8 | None | ERR4818050 | Other | lineage4.6.2.2 | None | ERR4818190 | Other | lineage4.8 | None | ERR4818126 | RR-TB | lineage1 | None | ERR4819087 | Other | lineage4.3.3 | None | ERR2512443 | Other | lineage4.8 | gb | ERR4818128 | RR-TB | lineage4.1.2.1 | None | ERR4818918 | Other | lineage1.1.2 | gb | ERR4818897 | Other | lineage4.1.2.1 | gb | ERR4818851 | RR-TB | lineage4.4.1.1 | None | ERR2513231 | RR-TB | lineage4.3.4.2 | None | ERR4818407 | Other | lineage4.3.2 | None | ERR4818449 | Other | lineage4.3.3 | None | ERR4818431 | Other | lineage1.1.2 | gb | ERR4818548 | Other | lineage4.3.3 | None | SRR5007168 | RR-TB | lineage4.9 | None | ERR2513298 | Other | lineage4.8 | gb | ERR4818556 | Other | lineage3 | None | ERR4818570 | Other | lineage4.3.3 | None | SRR5007167 | RR-TB | lineage4.1.1.3.1 | None | ERR2512841 | HR-TB | lineage2.2.1 | gb | ERR4817563 | Other | lineage4.1.2.1 | gb | SRR5007170 | RR-TB | lineage4.9 | None | SRR5007193 | RR-TB | lineage4.1.1.3.1 | None | SRR5007169 | RR-TB | lineage4.8.2 | None | ERR4819096 | Other | lineage4.4.1.1 | None | ERR4817619 | Other | lineage4.1.2.1 | gb | ERR4820230 | Other | lineage4.1.2.1 | gb | ERR4819133 | Other | lineage1.2.2.2 | None | ERR4819192 | Other | lineage3 | None | ERR4819166 | Other | lineage3 | gb | ERR4819198 | Other | lineage2.2.1 | None | ERR4819191 | Other | lineage4.6.2.2 | None | ERR2513830 | RR-TB | lineage4.8 | None | ERR4820720 | Other | lineage4.1.2.1 | None | ERR4819217 | Other | lineage1.2.2.2 | None | ERR4820256 | Other | lineage2.2.1 | None | ERR4820723 | RR-TB | lineage4.4.1.1 | None | ERR4819265 | HR-TB | lineage4.3.4.1 | None | ERR4819242 | HR-TB | lineage4.6.2.2 | None | ERR2513904 | Other | lineage3.1.2.2 | gb | ERR4819528 | RR-TB | lineage3 | None | ERR4819324 | Other | lineage4.8 | gb | ERR4820736 | Other | lineage4.1.2.1 | gb | ERR4820324 | Other | lineage4 | None | ERR4819491 | Other | lineage4.1.2.1 | None | ERR4820369 | Other | lineage2.2.1 | None | ERR2514261 | Other | lineage3 | None | ERR2513910 | Other | lineage3 | gb | ERR4820746 | RR-TB | lineage3 | None | ERR4819522 | Other | lineage4.2.1 | gb | ERR4819533 | Other | lineage1.1.2 | None | ERR2514351 | Sensitive | lineage3 | gb | ERR4819561 | Sensitive | lineage4.1.2.1 | gb | ERR4819547 | HR-TB | lineage2.2.1 | gb | ERR4819567 | Other | lineage2.2.1 | None | ERR4820404 | Other | lineage4.3.2 | None | ERR4819593 | Other | lineage4.5 | None | ERR4819706 | MDR-TB | lineage4.3.4.2 | None | ERR4819615 | Other | lineage4.3.4.2.1 | None | ERR4819636 | Other | lineage3.1.2 | None | ERR4820410 | Pre-XDR-TB | lineage3.1.1 | None | ERR4819641 | HR-TB | lineage4.6.2.2 | None | ERR4819640 | RR-TB | lineage4.6.2.2 | None | ERR2514550 | MDR-TB | lineage3 | gb | ERR4820891 | Other | lineage4.9 | gb | ERR4819864 | RR-TB | lineage1.1.3.1 | None | ERR4819766 | Other | lineage4.4.1.1 | None | ERR4819772 | RR-TB | lineage1.1.3.1 | None | ERR4819824 | Sensitive | lineage4.4.2 | gb | ERR4819982 | RR-TB | lineage2.2.1 | None | ERR4819948 | Other | lineage4.4.1.1 | None | ERR2514949 | Sensitive | lineage3 | gb | ERR2514968 | Other | lineage4.3.3 | None | ERR2515032 | Other | lineage3 | None | ERR2515077 | Sensitive | lineage3 | gb | ERR4820019 | Other | lineage4.3.4.2.1 | None | ERR4820833 | HR-TB | None | ERR4820075 | Other | lineage4.1.2.1 | None | ERR4820107 | RR-TB | None | ERR4820846 | RR-TB | lineage4.6.2.2 | gb | ERR4820188 | Other | lineage3 | gb | ERR4820161 | Other | lineage3 | None | ERR4820151 | RR-TB | lineage4.8 | None | ERR4821775 | Other | lineage4 | None | SRR6045496 | Other | lineage6.1.3 | None | ERR4821812 | Other | lineage4.8 | gb | ERR4821105 | Other | lineage3.1.2 | gb | ERR4821119 | Other | lineage4.4.1.1 | None | SRR6045553 | RR-TB | lineage4.9 | None | SRR6045516 | Other | lineage3.1.1 | None | ERR4821214 | RR-TB | None | ERR4821372 | Other | lineage4.1.2.1 | None | ERR4821917 | Sensitive | lineage1.1.3.2 | gb | ERR4821222 | Other | lineage4.3.2.1 | None | ERR4821981 | Other | lineage4.1.2.1 | None | ERR4821318 | HR-TB | lineage4.6.2.2 | gb | ERR4822043 | Other | lineage4.1.1 | None | ERR4821286 | Other | lineage4.8 | None | ERR4821360 | Other | lineage4.1.2.1 | None | ERR4822085 | Other | lineage4.8 | gb | ERR4821417 | Other | lineage1.1.3.1 | None | ERR4822261 | RR-TB | lineage2.2.1 | None | ERR4822114 | Other | lineage4.1.2.1 | None | ERR4821584 | Other | lineage4.8.2 | None | ERR4822150 | Other | lineage4.8 | gb | ERR4821526 | Other | lineage4.3.2 | None | ERR4821563 | HR-TB | lineage1.1.2 | gb | ERR4821704 | MDR-TB | lineage4.3.3 | None | ERR4821679 | Other | lineage4.3.3 | None | ERR4821761 | Other | lineage3 | gb | ERR4821712 | HR-TB | None | SRR5818391 | Other | lineage4.9 | None | SRR6045603 | RR-TB | lineage4.1.1.3 | None | SRR6045664 | Other | lineage4.2.1 | None | SRR5818397 | Other | lineage4.9 | None | SRR5818395 | Sensitive | lineage4.9 | None | SRR5818402 | Other | lineage4.9 | None | SRR5818399 | Sensitive | lineage4.9 | None | SRR5818389 | Other | lineage4.9 | None | SRR5818388 | Other | lineage4.9 | None | SRR5818400 | Other | lineage4.9 | None | SRR5818411 | MDR-TB | lineage4.9 | None | SRR5818404 | Other | lineage4.9 | None | SRR6045705 | Other | lineage4.9 | None | SRR5818408 | Other | lineage4.9 | None | SRR5818430 | Sensitive | lineage4.9 | None | SRR5818435 | Sensitive | lineage4.9 | None | SRR5818432 | MDR-TB | lineage4.9 | None | SRR5818434 | Sensitive | lineage4.9 | None | SRR5818459 | Other | lineage4.9 | None | SRR5818448 | Other | lineage4.9 | None | SRR5818452 | Other | lineage4.9 | None | SRR5818429 | Sensitive | lineage4.9 | None | SRR5818446 | Other | lineage4.9 | None | SRR6045957 | Other | lineage4.9 | None | SRR5818449 | MDR-TB | lineage4.9 | None | SRR5818464 | Other | lineage4.9 | None | SRR5818466 | Other | lineage4.9 | None | SRR6045726 | Other | lineage3 | None | SRR5818586 | RR-TB | lineage4.2.2.2 | None | SRR5818469 | Other | lineage4.9 | None | SRR6044958 | Other | lineage4.4.1.1 | None | SRR6046343 | Other | lineage2.2.1 | None | SRR6045071 | Other | lineage4.3.1.1 | None | SRR6046208 | Other | lineage4 | None | SRR6046534 | Other | lineage1.1.2 | None | ERR2851359 | Other | lineage4.9 | None | ERR4829835 | HR-TB | lineage4.8 | it | SRR6046646 | Other | lineage4.7 | gb | SRR6046616 | Other | lineage4.3.1.1 | None | SRR6046815 | Other | lineage3 | None | SRR6046737 | Other | lineage4.9 | None | SRR6046852 | MDR-TB | lineage3 | None | SRR6046848 | Other | lineage4.6.5 | None | ERR10796576 | RR-TB | lineage4.9 | None | ERR502517 | MDR-TB | lineage5.1.1 | None | SRR7131152 | MDR-TB | lineage2.2.1 | None | ERR10796563 | Other | lineage4.3.3 | None | ERR10796565 | RR-TB | lineage4.9 | None | SRR7131287 | Other | lineage2.2.1.1 | None | ERR10796564 | Other | lineage4.3.3 | None | ERR10796636 | Other | lineage4.1.2.1 | None | ERR10796578 | Other | lineage2.2.1 | None | ERR10796626 | Other | lineage4.1.2 | None | ERR10796633 | RR-TB | lineage4.3.4 | None |
|---|
