Run ID: ERR4818126
Sample name:
Date: 01-04-2023 15:22:57
Number of reads: 2033863
Percentage reads mapped: 53.89
Strain: lineage1
Drug-resistance: RR-TB
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage1 | Indo-Oceanic | EAI | RD239 | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|---|---|---|---|---|
rpoB | 761099 | p.Ser431Arg | missense_variant | 0.1 | rifampicin |
rpoB | 761127 | p.Ser441Ala | missense_variant | 0.12 | rifampicin |
rrs | 1472644 | n.799C>T | non_coding_transcript_exon_variant | 0.16 | streptomycin |
rrs | 1472733 | n.888G>A | non_coding_transcript_exon_variant | 0.59 | streptomycin |
rrs | 1473247 | n.1402C>A | non_coding_transcript_exon_variant | 0.22 | kanamycin, capreomycin, aminoglycosides, amikacin |
rrs | 1473329 | n.1484G>T | non_coding_transcript_exon_variant | 0.36 | kanamycin, capreomycin, aminoglycosides, amikacin |
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrB | 5350 | c.111C>T | synonymous_variant | 1.0 |
gyrB | 6112 | p.Met291Ile | missense_variant | 1.0 |
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 8452 | p.Ala384Val | missense_variant | 1.0 |
gyrA | 8693 | p.Asp464Glu | missense_variant | 1.0 |
gyrA | 9143 | c.1842T>C | synonymous_variant | 1.0 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
gyrA | 9575 | c.2274G>A | synonymous_variant | 1.0 |
fgd1 | 491742 | c.960T>C | synonymous_variant | 1.0 |
rpoB | 761027 | c.1221A>G | synonymous_variant | 0.12 |
rpoB | 761037 | c.1231T>C | synonymous_variant | 0.13 |
rpoB | 761054 | c.1248G>C | synonymous_variant | 0.19 |
rpoB | 761060 | c.1254C>G | synonymous_variant | 0.23 |
rpoB | 761088 | c.1282_1283delAGinsTC | synonymous_variant | 0.21 |
rpoB | 761096 | c.1290G>C | synonymous_variant | 0.21 |
rpoB | 761102 | c.1296A>G | synonymous_variant | 0.18 |
rpoB | 761133 | c.1327T>C | synonymous_variant | 0.11 |
rpoB | 762024 | p.Val740Ile | missense_variant | 0.12 |
rpoB | 762050 | c.2244G>A | synonymous_variant | 0.13 |
rpoB | 762051 | p.His749Tyr | missense_variant | 0.13 |
rpoB | 762057 | p.Ile751Val | missense_variant | 0.15 |
rpoB | 762062 | c.2256T>C | synonymous_variant | 0.16 |
rpoB | 762065 | c.2259T>C | synonymous_variant | 0.16 |
rpoB | 762071 | p.Asp755Glu | missense_variant | 0.12 |
rpoB | 762080 | c.2274G>C | synonymous_variant | 0.13 |
rpoB | 762085 | p.Ala760Glu | missense_variant | 0.13 |
rpoB | 762089 | c.2283G>A | synonymous_variant | 0.13 |
rpoB | 762092 | c.2286G>A | synonymous_variant | 0.13 |
rpoB | 762149 | c.2343G>C | synonymous_variant | 0.18 |
rpoB | 762156 | p.Val784Ile | missense_variant | 0.21 |
rpoB | 762167 | c.2361T>C | synonymous_variant | 0.17 |
rpoB | 762176 | c.2370T>C | synonymous_variant | 0.23 |
rpoB | 762177 | p.Arg791Thr | missense_variant | 0.17 |
rpoB | 762181 | p.Asp792Ala | missense_variant | 0.19 |
rpoB | 762185 | c.2379G>C | synonymous_variant | 0.27 |
rpoB | 762194 | c.2388G>C | synonymous_variant | 0.32 |
rpoB | 762218 | c.2412T>A | synonymous_variant | 0.25 |
rpoB | 762236 | c.2430G>C | synonymous_variant | 0.16 |
rpoB | 762239 | c.2433G>A | synonymous_variant | 0.14 |
rpoB | 762245 | c.2439G>C | synonymous_variant | 0.18 |
rpoB | 762248 | c.2442G>A | synonymous_variant | 0.14 |
rpoB | 762254 | c.2448T>C | synonymous_variant | 0.17 |
rpoB | 762879 | p.Met1025Leu | missense_variant | 0.2 |
rpoC | 762905 | c.-465C>T | upstream_gene_variant | 0.21 |
rpoC | 762911 | c.-459C>T | upstream_gene_variant | 0.28 |
rpoC | 762917 | c.-453C>T | upstream_gene_variant | 0.19 |
rpoC | 762920 | c.-450C>T | upstream_gene_variant | 0.18 |
rpoC | 762929 | c.-441G>T | upstream_gene_variant | 0.28 |
rpoC | 762938 | c.-432G>C | upstream_gene_variant | 0.1 |
rpoC | 762944 | c.-426C>T | upstream_gene_variant | 0.14 |
rpoC | 762956 | c.-414G>C | upstream_gene_variant | 0.12 |
rpoC | 762983 | c.-387C>T | upstream_gene_variant | 0.12 |
rpoC | 763031 | c.-339T>C | upstream_gene_variant | 1.0 |
rpoC | 763043 | c.-327G>C | upstream_gene_variant | 0.15 |
rpoC | 763053 | c.-317T>C | upstream_gene_variant | 0.23 |
rpoC | 763070 | c.-300T>C | upstream_gene_variant | 0.24 |
rpoB | 763077 | p.Val1091Thr | missense_variant | 0.29 |
rpoC | 763103 | c.-267G>C | upstream_gene_variant | 0.25 |
rpoC | 763115 | c.-255T>C | upstream_gene_variant | 0.24 |
rpoB | 763119 | p.Asn1105Asp | missense_variant | 0.23 |
rpoC | 763127 | c.-243G>C | upstream_gene_variant | 0.21 |
rpoC | 763133 | c.-237G>C | upstream_gene_variant | 0.19 |
rpoC | 763492 | c.123G>C | synonymous_variant | 0.12 |
rpoC | 763507 | c.138G>C | synonymous_variant | 0.12 |
rpoC | 763528 | c.159G>C | synonymous_variant | 0.13 |
rpoC | 763531 | c.162G>C | synonymous_variant | 0.13 |
rpoC | 763534 | c.165T>C | synonymous_variant | 0.12 |
rpoC | 763537 | c.168C>G | synonymous_variant | 0.13 |
rpoC | 763546 | c.177A>G | synonymous_variant | 0.14 |
rpoC | 763550 | p.Tyr61Ala | missense_variant | 0.12 |
rpoC | 763642 | c.273G>C | synonymous_variant | 0.12 |
rpoC | 763647 | p.Gly93Ala | missense_variant | 0.12 |
rpoC | 763655 | p.Glu96Lys | missense_variant | 0.13 |
rpoC | 763660 | c.291T>C | synonymous_variant | 0.17 |
rpoC | 763669 | c.300C>G | synonymous_variant | 0.16 |
rpoC | 763699 | c.330G>T | synonymous_variant | 0.22 |
rpoC | 763708 | c.339G>C | synonymous_variant | 0.25 |
rpoC | 763714 | c.345G>C | synonymous_variant | 0.31 |
rpoC | 763717 | c.348T>C | synonymous_variant | 0.29 |
rpoC | 763718 | p.Leu117Val | missense_variant | 0.21 |
rpoC | 763723 | c.354G>C | synonymous_variant | 0.2 |
rpoC | 763724 | p.Asp119Asn | missense_variant | 0.2 |
rpoC | 763729 | c.360G>C | synonymous_variant | 0.23 |
rpoC | 763732 | c.363C>G | synonymous_variant | 0.26 |
rpoC | 763735 | c.366G>C | synonymous_variant | 0.24 |
rpoC | 763744 | c.375G>C | synonymous_variant | 0.12 |
rpoC | 763751 | p.Ile128Val | missense_variant | 0.33 |
rpoC | 763772 | p.Val135Met | missense_variant | 0.21 |
rpoC | 763781 | p.Ser138Ala | missense_variant | 0.13 |
rpoC | 763884 | p.Ala172Val | missense_variant | 1.0 |
rpoC | 763886 | c.517C>A | synonymous_variant | 1.0 |
rpoC | 764446 | p.Asp359Glu | missense_variant | 0.14 |
rpoC | 764455 | c.1086G>C | synonymous_variant | 0.16 |
rpoC | 764458 | c.1089G>C | synonymous_variant | 0.16 |
rpoC | 764461 | c.1092A>G | synonymous_variant | 0.16 |
rpoC | 764485 | c.1116G>C | synonymous_variant | 0.32 |
rpoC | 764491 | c.1122G>T | synonymous_variant | 0.32 |
rpoC | 764497 | c.1128A>G | synonymous_variant | 0.33 |
rpoC | 764503 | c.1134G>T | synonymous_variant | 0.38 |
rpoC | 764509 | c.1140G>C | synonymous_variant | 0.43 |
rpoC | 764512 | c.1143G>C | synonymous_variant | 0.34 |
rpoC | 764521 | c.1152T>C | synonymous_variant | 0.45 |
rpoC | 764536 | c.1167G>T | synonymous_variant | 0.39 |
rpoC | 764542 | c.1173C>T | synonymous_variant | 0.17 |
rpoC | 764543 | p.Thr392Ala | missense_variant | 0.21 |
rpoC | 764548 | c.1179G>C | synonymous_variant | 0.3 |
rpoC | 764549 | p.Pro394Ala | missense_variant | 0.1 |
rpoC | 764593 | c.1224C>T | synonymous_variant | 0.13 |
rpoC | 764605 | c.1236G>T | synonymous_variant | 0.2 |
rpoC | 764611 | c.1242G>T | synonymous_variant | 0.24 |
rpoC | 764626 | c.1257C>T | synonymous_variant | 0.31 |
rpoC | 764632 | c.1263T>C | synonymous_variant | 0.35 |
rpoC | 764647 | c.1278C>T | synonymous_variant | 0.4 |
rpoC | 764650 | c.1281G>T | synonymous_variant | 0.4 |
rpoC | 764653 | c.1284G>C | synonymous_variant | 0.4 |
rpoC | 764656 | c.1287C>T | synonymous_variant | 0.38 |
rpoC | 764662 | c.1293G>C | synonymous_variant | 0.38 |
rpoC | 764677 | c.1308C>G | synonymous_variant | 0.36 |
rpoC | 764678 | p.Lys437Gln | missense_variant | 0.31 |
rpoC | 764706 | p.Leu446Gln | missense_variant | 0.3 |
rpoC | 764713 | c.1344G>C | synonymous_variant | 0.18 |
rpoC | 764731 | c.1362G>C | synonymous_variant | 0.15 |
rpoC | 764737 | c.1368G>C | synonymous_variant | 0.11 |
rpoC | 764746 | c.1377G>T | synonymous_variant | 0.12 |
rpoC | 764767 | c.1398G>T | synonymous_variant | 0.13 |
rpoC | 764776 | c.1407C>T | synonymous_variant | 0.16 |
rpoC | 764797 | c.1428G>T | synonymous_variant | 0.19 |
rpoC | 764803 | c.1434C>T | synonymous_variant | 0.15 |
rpoC | 764804 | p.Gln479Phe | missense_variant | 0.13 |
rpoC | 764812 | c.1443C>G | synonymous_variant | 0.14 |
rpoC | 764815 | c.1446A>G | synonymous_variant | 0.15 |
rpoC | 764818 | c.1449G>T | synonymous_variant | 0.12 |
rpoC | 764827 | c.1458G>T | synonymous_variant | 0.15 |
rpoC | 764830 | c.1461C>G | synonymous_variant | 0.15 |
rpoC | 764839 | c.1470C>T | synonymous_variant | 0.13 |
rpoC | 764854 | c.1485G>C | synonymous_variant | 0.14 |
rpoC | 764858 | c.1489T>C | synonymous_variant | 0.12 |
rpoC | 765988 | c.2619G>C | synonymous_variant | 0.11 |
rpoC | 765991 | c.2622C>G | synonymous_variant | 0.1 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
mmpL5 | 776100 | p.Thr794Ile | missense_variant | 1.0 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
embR | 1417019 | p.Cys110Tyr | missense_variant | 1.0 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrs | 1472068 | n.223T>G | non_coding_transcript_exon_variant | 0.33 |
rrs | 1472075 | n.230A>G | non_coding_transcript_exon_variant | 0.55 |
rrs | 1472078 | n.233C>T | non_coding_transcript_exon_variant | 0.69 |
rrs | 1472102 | n.257G>A | non_coding_transcript_exon_variant | 0.19 |
rrs | 1472106 | n.261G>A | non_coding_transcript_exon_variant | 0.18 |
rrs | 1472108 | n.263C>T | non_coding_transcript_exon_variant | 0.76 |
rrs | 1472112 | n.267C>T | non_coding_transcript_exon_variant | 0.25 |
rrs | 1472113 | n.268T>C | non_coding_transcript_exon_variant | 0.21 |
rrs | 1472122 | n.277G>T | non_coding_transcript_exon_variant | 0.44 |
rrs | 1472123 | n.278A>T | non_coding_transcript_exon_variant | 0.53 |
rrs | 1472124 | n.279C>T | non_coding_transcript_exon_variant | 0.61 |
rrs | 1472150 | n.305T>A | non_coding_transcript_exon_variant | 0.96 |
rrs | 1472150 | n.305T>G | non_coding_transcript_exon_variant | 0.84 |
rrs | 1472151 | n.306C>A | non_coding_transcript_exon_variant | 0.16 |
rrs | 1472155 | n.310C>T | non_coding_transcript_exon_variant | 0.57 |
rrs | 1472160 | n.315C>T | non_coding_transcript_exon_variant | 0.38 |
rrs | 1472172 | n.327T>C | non_coding_transcript_exon_variant | 0.6 |
rrs | 1472225 | n.380C>A | non_coding_transcript_exon_variant | 0.34 |
rrs | 1472251 | n.406G>A | non_coding_transcript_exon_variant | 0.97 |
rrs | 1472258 | n.413A>G | non_coding_transcript_exon_variant | 0.34 |
rrs | 1472259 | n.414C>A | non_coding_transcript_exon_variant | 0.36 |
rrs | 1472285 | n.440A>G | non_coding_transcript_exon_variant | 0.75 |
rrs | 1472338 | n.493A>G | non_coding_transcript_exon_variant | 0.67 |
rrs | 1472344 | n.499C>T | non_coding_transcript_exon_variant | 0.67 |
rrs | 1472379 | n.534T>C | non_coding_transcript_exon_variant | 0.67 |
rrs | 1472400 | n.555C>T | non_coding_transcript_exon_variant | 0.62 |
rrs | 1472412 | n.567A>G | non_coding_transcript_exon_variant | 0.67 |
rrs | 1472416 | n.571C>T | non_coding_transcript_exon_variant | 0.8 |
rrs | 1472422 | n.577T>C | non_coding_transcript_exon_variant | 0.75 |
rrs | 1472427 | n.582T>G | non_coding_transcript_exon_variant | 0.75 |
rrs | 1472476 | n.631A>G | non_coding_transcript_exon_variant | 0.4 |
rrs | 1472484 | n.639A>T | non_coding_transcript_exon_variant | 0.22 |
rrs | 1472489 | n.644A>T | non_coding_transcript_exon_variant | 0.14 |
rrs | 1472494 | n.649A>G | non_coding_transcript_exon_variant | 0.71 |
rrs | 1472496 | n.651T>A | non_coding_transcript_exon_variant | 0.67 |
rrs | 1472498 | n.653C>A | non_coding_transcript_exon_variant | 0.67 |
rrs | 1472498 | n.653C>T | non_coding_transcript_exon_variant | 0.76 |
rrs | 1472507 | n.662C>G | non_coding_transcript_exon_variant | 0.47 |
rrs | 1472513 | n.668T>C | non_coding_transcript_exon_variant | 0.36 |
rrs | 1472517 | n.672T>A | non_coding_transcript_exon_variant | 0.53 |
rrs | 1472518 | n.673G>T | non_coding_transcript_exon_variant | 0.51 |
rrs | 1472530 | n.685G>A | non_coding_transcript_exon_variant | 0.61 |
rrs | 1472537 | n.692C>T | non_coding_transcript_exon_variant | 0.65 |
rrs | 1472544 | n.699C>A | non_coding_transcript_exon_variant | 0.66 |
rrs | 1472545 | n.700A>T | non_coding_transcript_exon_variant | 0.66 |
rrs | 1472549 | n.704G>A | non_coding_transcript_exon_variant | 0.29 |
rrs | 1472566 | n.721G>A | non_coding_transcript_exon_variant | 0.64 |
rrs | 1472571 | n.726G>C | non_coding_transcript_exon_variant | 0.66 |
rrs | 1472579 | n.734G>T | non_coding_transcript_exon_variant | 0.66 |
rrs | 1472581 | n.736A>C | non_coding_transcript_exon_variant | 0.97 |
rrs | 1472581 | n.736A>T | non_coding_transcript_exon_variant | 0.99 |
rrs | 1472584 | n.739A>T | non_coding_transcript_exon_variant | 0.21 |
rrs | 1472598 | n.753A>C | non_coding_transcript_exon_variant | 0.67 |
rrs | 1472599 | n.754G>T | non_coding_transcript_exon_variant | 0.67 |
rrs | 1472616 | n.771G>A | non_coding_transcript_exon_variant | 0.61 |
rrs | 1472647 | n.802C>T | non_coding_transcript_exon_variant | 0.26 |
rrs | 1472655 | n.810G>A | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472655 | n.810G>T | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472658 | n.813G>A | non_coding_transcript_exon_variant | 0.5 |
rrs | 1472660 | n.815T>C | non_coding_transcript_exon_variant | 0.47 |
rrs | 1472661 | n.816A>G | non_coding_transcript_exon_variant | 0.55 |
rrs | 1472670 | n.825G>T | non_coding_transcript_exon_variant | 0.52 |
rrs | 1472687 | n.842_843insC | non_coding_transcript_exon_variant | 0.92 |
rrs | 1472690 | n.845C>A | non_coding_transcript_exon_variant | 0.65 |
rrs | 1472692 | n.847T>C | non_coding_transcript_exon_variant | 0.22 |
rrs | 1472697 | n.852T>C | non_coding_transcript_exon_variant | 0.65 |
rrs | 1472707 | n.862A>T | non_coding_transcript_exon_variant | 0.19 |
rrs | 1472713 | n.868T>C | non_coding_transcript_exon_variant | 0.57 |
rrs | 1472714 | n.869A>G | non_coding_transcript_exon_variant | 0.41 |
rrs | 1472716 | n.871C>T | non_coding_transcript_exon_variant | 0.6 |
rrs | 1472742 | n.897C>T | non_coding_transcript_exon_variant | 0.57 |
rrs | 1472744 | n.899A>G | non_coding_transcript_exon_variant | 0.56 |
rrs | 1472755 | n.910G>A | non_coding_transcript_exon_variant | 0.15 |
rrs | 1472781 | n.936C>T | non_coding_transcript_exon_variant | 0.55 |
rrs | 1472790 | n.945T>C | non_coding_transcript_exon_variant | 0.44 |
rrs | 1472793 | n.948A>T | non_coding_transcript_exon_variant | 0.55 |
rrs | 1472803 | n.958T>A | non_coding_transcript_exon_variant | 0.56 |
rrs | 1472824 | n.979T>A | non_coding_transcript_exon_variant | 0.96 |
rrs | 1472825 | n.980G>A | non_coding_transcript_exon_variant | 0.4 |
rrs | 1472827 | n.982G>T | non_coding_transcript_exon_variant | 0.32 |
rrs | 1472828 | n.983T>C | non_coding_transcript_exon_variant | 0.93 |
rrs | 1472840 | n.995A>G | non_coding_transcript_exon_variant | 0.6 |
rrs | 1472875 | n.1030T>C | non_coding_transcript_exon_variant | 0.5 |
rrs | 1472895 | n.1050C>T | non_coding_transcript_exon_variant | 0.94 |
rrs | 1472952 | n.1107T>C | non_coding_transcript_exon_variant | 0.43 |
rrs | 1472954 | n.1109T>C | non_coding_transcript_exon_variant | 0.39 |
rrs | 1472955 | n.1110C>T | non_coding_transcript_exon_variant | 0.44 |
rrs | 1472956 | n.1111T>C | non_coding_transcript_exon_variant | 0.97 |
rrs | 1472957 | n.1112C>T | non_coding_transcript_exon_variant | 0.83 |
rrs | 1472958 | n.1113A>G | non_coding_transcript_exon_variant | 0.12 |
rrs | 1472973 | n.1128A>G | non_coding_transcript_exon_variant | 0.94 |
rrs | 1472973 | n.1128A>T | non_coding_transcript_exon_variant | 0.97 |
rrs | 1472974 | n.1129A>G | non_coding_transcript_exon_variant | 0.11 |
rrs | 1472987 | n.1142G>A | non_coding_transcript_exon_variant | 0.43 |
rrs | 1472988 | n.1143T>C | non_coding_transcript_exon_variant | 0.13 |
rrs | 1472989 | n.1144G>A | non_coding_transcript_exon_variant | 0.43 |
rrs | 1472990 | n.1145A>G | non_coding_transcript_exon_variant | 0.97 |
rrs | 1472992 | n.1147A>G | non_coding_transcript_exon_variant | 0.34 |
rrs | 1473005 | n.1160C>T | non_coding_transcript_exon_variant | 0.31 |
rrs | 1473035 | n.1190G>A | non_coding_transcript_exon_variant | 0.98 |
rrs | 1473055 | n.1210C>T | non_coding_transcript_exon_variant | 0.97 |
rrs | 1473056 | n.1211A>T | non_coding_transcript_exon_variant | 0.99 |
rrs | 1473066 | n.1221A>G | non_coding_transcript_exon_variant | 0.97 |
rrs | 1473080 | n.1235C>T | non_coding_transcript_exon_variant | 0.25 |
rrs | 1473081 | n.1236C>T | non_coding_transcript_exon_variant | 0.32 |
rrs | 1473088 | n.1243A>G | non_coding_transcript_exon_variant | 0.99 |
rrs | 1473093 | n.1248C>T | non_coding_transcript_exon_variant | 0.76 |
rrs | 1473100 | n.1255G>A | non_coding_transcript_exon_variant | 0.98 |
rrs | 1473101 | n.1256C>T | non_coding_transcript_exon_variant | 0.27 |
rrs | 1473102 | n.1257C>T | non_coding_transcript_exon_variant | 0.45 |
rrs | 1473104 | n.1259C>T | non_coding_transcript_exon_variant | 0.98 |
rrs | 1473110 | n.1265T>G | non_coding_transcript_exon_variant | 0.97 |
rrs | 1473111 | n.1266A>G | non_coding_transcript_exon_variant | 0.96 |
rrs | 1473115 | n.1270G>T | non_coding_transcript_exon_variant | 0.34 |
rrs | 1473121 | n.1276T>C | non_coding_transcript_exon_variant | 0.94 |
rrs | 1473123 | n.1278A>T | non_coding_transcript_exon_variant | 0.62 |
rrs | 1473130 | n.1285G>A | non_coding_transcript_exon_variant | 0.49 |
rrs | 1473145 | n.1300C>T | non_coding_transcript_exon_variant | 0.81 |
rrs | 1473148 | n.1303G>T | non_coding_transcript_exon_variant | 0.15 |
rrs | 1473163 | n.1318C>A | non_coding_transcript_exon_variant | 0.14 |
rrs | 1473166 | n.1321G>A | non_coding_transcript_exon_variant | 0.81 |
rrs | 1473172 | n.1327T>G | non_coding_transcript_exon_variant | 0.5 |
rrs | 1473173 | n.1328C>T | non_coding_transcript_exon_variant | 0.68 |
rrs | 1473221 | n.1376C>T | non_coding_transcript_exon_variant | 0.63 |
rrs | 1473252 | n.1407T>C | non_coding_transcript_exon_variant | 0.84 |
rrs | 1473259 | n.1414C>T | non_coding_transcript_exon_variant | 0.84 |
rrs | 1473262 | n.1417T>C | non_coding_transcript_exon_variant | 0.11 |
rrs | 1473270 | n.1425G>A | non_coding_transcript_exon_variant | 0.29 |
rrs | 1473276 | n.1431A>C | non_coding_transcript_exon_variant | 0.9 |
rrs | 1473276 | n.1431A>G | non_coding_transcript_exon_variant | 0.82 |
rrs | 1473277 | n.1432G>A | non_coding_transcript_exon_variant | 0.53 |
rrs | 1473300 | n.1455C>T | non_coding_transcript_exon_variant | 0.46 |
rrs | 1473301 | n.1456T>C | non_coding_transcript_exon_variant | 0.85 |
rrs | 1473301 | n.1456T>G | non_coding_transcript_exon_variant | 0.88 |
rrs | 1473305 | n.1460G>T | non_coding_transcript_exon_variant | 0.33 |
rrs | 1473315 | n.1470T>C | non_coding_transcript_exon_variant | 0.11 |
rrs | 1473316 | n.1471C>T | non_coding_transcript_exon_variant | 0.93 |
rrl | 1473782 | n.125A>G | non_coding_transcript_exon_variant | 0.17 |
rrl | 1473783 | n.126A>G | non_coding_transcript_exon_variant | 0.17 |
rrl | 1473788 | n.131A>G | non_coding_transcript_exon_variant | 0.18 |
rrl | 1473797 | n.140G>T | non_coding_transcript_exon_variant | 0.2 |
rrl | 1473806 | n.149C>T | non_coding_transcript_exon_variant | 0.22 |
rrl | 1473807 | n.150T>C | non_coding_transcript_exon_variant | 0.22 |
rrl | 1473811 | n.154C>T | non_coding_transcript_exon_variant | 0.22 |
rrl | 1473832 | n.175C>T | non_coding_transcript_exon_variant | 0.4 |
rrl | 1473836 | n.179A>G | non_coding_transcript_exon_variant | 0.33 |
rrl | 1473839 | n.182G>T | non_coding_transcript_exon_variant | 0.33 |
rrl | 1473840 | n.183A>G | non_coding_transcript_exon_variant | 0.33 |
rrl | 1474164 | n.507C>T | non_coding_transcript_exon_variant | 0.57 |
rrl | 1474171 | n.514C>T | non_coding_transcript_exon_variant | 0.12 |
rrl | 1474181 | n.524C>A | non_coding_transcript_exon_variant | 0.86 |
rrl | 1474184 | n.527C>T | non_coding_transcript_exon_variant | 0.86 |
rrl | 1474185 | n.528G>A | non_coding_transcript_exon_variant | 0.25 |
rrl | 1474186 | n.529A>G | non_coding_transcript_exon_variant | 0.12 |
rrl | 1474197 | n.540C>T | non_coding_transcript_exon_variant | 0.89 |
rrl | 1474199 | n.542G>C | non_coding_transcript_exon_variant | 0.69 |
rrl | 1474200 | n.545delT | non_coding_transcript_exon_variant | 0.88 |
rrl | 1474249 | n.592G>T | non_coding_transcript_exon_variant | 0.97 |
rrl | 1474264 | n.607T>G | non_coding_transcript_exon_variant | 0.18 |
rrl | 1474266 | n.609T>C | non_coding_transcript_exon_variant | 0.18 |
rrl | 1474269 | n.612C>T | non_coding_transcript_exon_variant | 0.6 |
rrl | 1474271 | n.614A>G | non_coding_transcript_exon_variant | 0.43 |
rrl | 1474272 | n.615C>T | non_coding_transcript_exon_variant | 0.33 |
rrl | 1474275 | n.618T>G | non_coding_transcript_exon_variant | 0.83 |
rrl | 1474308 | n.651G>T | non_coding_transcript_exon_variant | 0.67 |
rrl | 1474310 | n.653T>G | non_coding_transcript_exon_variant | 0.75 |
rrl | 1474315 | n.658A>G | non_coding_transcript_exon_variant | 0.4 |
rrl | 1474351 | n.694G>T | non_coding_transcript_exon_variant | 0.62 |
rrl | 1474353 | n.696A>G | non_coding_transcript_exon_variant | 0.5 |
rrl | 1474355 | n.698A>G | non_coding_transcript_exon_variant | 0.67 |
rrl | 1474362 | n.705A>G | non_coding_transcript_exon_variant | 0.67 |
rrl | 1474387 | n.730C>T | non_coding_transcript_exon_variant | 0.78 |
rrl | 1474393 | n.736A>G | non_coding_transcript_exon_variant | 0.78 |
rrl | 1474402 | n.745T>C | non_coding_transcript_exon_variant | 0.75 |
rrl | 1474409 | n.756_776delACCCACACGCGCATACGCGCG | non_coding_transcript_exon_variant | 0.67 |
rrl | 1474435 | n.778G>T | non_coding_transcript_exon_variant | 0.67 |
rrl | 1474437 | n.781_782delAA | non_coding_transcript_exon_variant | 0.67 |
rrl | 1474448 | n.791T>C | non_coding_transcript_exon_variant | 0.88 |
rrl | 1474467 | n.810A>G | non_coding_transcript_exon_variant | 0.83 |
rrl | 1474488 | n.831G>T | non_coding_transcript_exon_variant | 0.95 |
rrl | 1474495 | n.838G>A | non_coding_transcript_exon_variant | 0.89 |
rrl | 1474498 | n.841G>T | non_coding_transcript_exon_variant | 0.87 |
rrl | 1474505 | n.848C>G | non_coding_transcript_exon_variant | 0.88 |
rrl | 1474508 | n.851C>T | non_coding_transcript_exon_variant | 0.93 |
rrl | 1474516 | n.859C>A | non_coding_transcript_exon_variant | 0.97 |
rrl | 1474527 | n.870T>C | non_coding_transcript_exon_variant | 0.94 |
rrl | 1474537 | n.880G>A | non_coding_transcript_exon_variant | 0.89 |
rrl | 1474542 | n.885A>G | non_coding_transcript_exon_variant | 0.88 |
rrl | 1474626 | n.969T>C | non_coding_transcript_exon_variant | 0.83 |
rrl | 1474632 | n.975G>T | non_coding_transcript_exon_variant | 0.83 |
rrl | 1474634 | n.977T>G | non_coding_transcript_exon_variant | 0.82 |
rrl | 1474636 | n.979A>C | non_coding_transcript_exon_variant | 0.88 |
rrl | 1474638 | n.981C>G | non_coding_transcript_exon_variant | 0.94 |
rrl | 1474658 | n.1001A>G | non_coding_transcript_exon_variant | 0.9 |
rrl | 1474663 | n.1006C>T | non_coding_transcript_exon_variant | 0.89 |
rrl | 1474673 | n.1016T>C | non_coding_transcript_exon_variant | 0.94 |
rrl | 1474676 | n.1019T>A | non_coding_transcript_exon_variant | 0.94 |
rrl | 1474677 | n.1020A>G | non_coding_transcript_exon_variant | 0.94 |
rrl | 1474692 | n.1035G>A | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474734 | n.1077G>C | non_coding_transcript_exon_variant | 0.95 |
rrl | 1474760 | n.1103A>G | non_coding_transcript_exon_variant | 0.96 |
rrl | 1474794 | n.1137C>T | non_coding_transcript_exon_variant | 0.96 |
rrl | 1474824 | n.1167A>G | non_coding_transcript_exon_variant | 0.91 |
rrl | 1474830 | n.1173A>G | non_coding_transcript_exon_variant | 0.95 |
rrl | 1474831 | n.1174A>C | non_coding_transcript_exon_variant | 0.95 |
rrl | 1474864 | n.1207C>T | non_coding_transcript_exon_variant | 0.94 |
rrl | 1474903 | n.1246T>C | non_coding_transcript_exon_variant | 0.67 |
rrl | 1474913 | n.1256T>C | non_coding_transcript_exon_variant | 0.8 |
rrl | 1475059 | n.1403_1404insTA | non_coding_transcript_exon_variant | 0.33 |
rrl | 1475062 | n.1405A>T | non_coding_transcript_exon_variant | 0.33 |
rrl | 1475065 | n.1409_1411delCAA | non_coding_transcript_exon_variant | 0.33 |
rrl | 1475080 | n.1425_1426delCC | non_coding_transcript_exon_variant | 0.29 |
rrl | 1475090 | n.1433A>T | non_coding_transcript_exon_variant | 0.29 |
rrl | 1475104 | n.1447T>A | non_coding_transcript_exon_variant | 0.29 |
rrl | 1475114 | n.1457C>T | non_coding_transcript_exon_variant | 0.29 |
rrl | 1475715 | n.2058G>C | non_coding_transcript_exon_variant | 0.73 |
rrl | 1475751 | n.2094C>A | non_coding_transcript_exon_variant | 0.94 |
rrl | 1475754 | n.2097G>A | non_coding_transcript_exon_variant | 0.25 |
rrl | 1475756 | n.2099T>C | non_coding_transcript_exon_variant | 0.94 |
rrl | 1475774 | n.2117C>T | non_coding_transcript_exon_variant | 0.22 |
rrl | 1475777 | n.2120A>T | non_coding_transcript_exon_variant | 0.89 |
rrl | 1475881 | n.2224T>C | non_coding_transcript_exon_variant | 0.47 |
rrl | 1475883 | n.2226A>C | non_coding_transcript_exon_variant | 0.96 |
rrl | 1475884 | n.2227A>G | non_coding_transcript_exon_variant | 0.92 |
rrl | 1475896 | n.2239A>G | non_coding_transcript_exon_variant | 0.21 |
rrl | 1475897 | n.2240T>C | non_coding_transcript_exon_variant | 0.11 |
rrl | 1475898 | n.2241A>G | non_coding_transcript_exon_variant | 0.94 |
rrl | 1475899 | n.2242G>A | non_coding_transcript_exon_variant | 0.94 |
rrl | 1475900 | n.2243A>G | non_coding_transcript_exon_variant | 0.69 |
rrl | 1475906 | n.2249C>T | non_coding_transcript_exon_variant | 0.12 |
rrl | 1475916 | n.2259C>G | non_coding_transcript_exon_variant | 0.91 |
rrl | 1475937 | n.2280A>T | non_coding_transcript_exon_variant | 0.71 |
rrl | 1475943 | n.2286G>A | non_coding_transcript_exon_variant | 0.6 |
rrl | 1475945 | n.2288C>A | non_coding_transcript_exon_variant | 0.4 |
rrl | 1475952 | n.2295A>G | non_coding_transcript_exon_variant | 0.6 |
rrl | 1475970 | n.2313C>T | non_coding_transcript_exon_variant | 0.6 |
rrl | 1475975 | n.2318C>T | non_coding_transcript_exon_variant | 0.6 |
rrl | 1475977 | n.2320A>G | non_coding_transcript_exon_variant | 0.6 |
rrl | 1475988 | n.2331A>G | non_coding_transcript_exon_variant | 0.75 |
rrl | 1475995 | n.2338G>C | non_coding_transcript_exon_variant | 0.5 |
rrl | 1475997 | n.2340A>T | non_coding_transcript_exon_variant | 0.75 |
rrl | 1475998 | n.2341C>G | non_coding_transcript_exon_variant | 0.67 |
rrl | 1476000 | n.2343G>A | non_coding_transcript_exon_variant | 0.4 |
rrl | 1476001 | n.2344T>C | non_coding_transcript_exon_variant | 0.6 |
rrl | 1476115 | n.2458T>C | non_coding_transcript_exon_variant | 0.6 |
rrl | 1476130 | n.2473G>A | non_coding_transcript_exon_variant | 0.23 |
rrl | 1476131 | n.2474C>T | non_coding_transcript_exon_variant | 0.93 |
rrl | 1476164 | n.2507A>G | non_coding_transcript_exon_variant | 0.64 |
rrl | 1476179 | n.2522C>T | non_coding_transcript_exon_variant | 0.67 |
rrl | 1476194 | n.2537A>G | non_coding_transcript_exon_variant | 0.92 |
rrl | 1476200 | n.2543A>T | non_coding_transcript_exon_variant | 0.93 |
rrl | 1476201 | n.2544C>T | non_coding_transcript_exon_variant | 0.56 |
rrl | 1476204 | n.2547C>T | non_coding_transcript_exon_variant | 0.3 |
rrl | 1476207 | n.2550T>C | non_coding_transcript_exon_variant | 0.37 |
rrl | 1476214 | n.2557G>T | non_coding_transcript_exon_variant | 0.6 |
rrl | 1476215 | n.2558C>T | non_coding_transcript_exon_variant | 0.6 |
rrl | 1476221 | n.2564T>C | non_coding_transcript_exon_variant | 0.65 |
rrl | 1476224 | n.2567A>G | non_coding_transcript_exon_variant | 0.88 |
rrl | 1476227 | n.2570C>T | non_coding_transcript_exon_variant | 0.24 |
rrl | 1476245 | n.2588C>T | non_coding_transcript_exon_variant | 0.4 |
rrl | 1476250 | n.2593C>G | non_coding_transcript_exon_variant | 0.4 |
rrl | 1476251 | n.2594T>C | non_coding_transcript_exon_variant | 0.44 |
rrl | 1476252 | n.2595T>G | non_coding_transcript_exon_variant | 0.22 |
rrl | 1476253 | n.2596A>G | non_coding_transcript_exon_variant | 0.22 |
rrl | 1476256 | n.2599A>G | non_coding_transcript_exon_variant | 0.33 |
rrl | 1476257 | n.2600G>C | non_coding_transcript_exon_variant | 0.44 |
rrl | 1476260 | n.2603A>G | non_coding_transcript_exon_variant | 0.78 |
rrl | 1476280 | n.2623A>C | non_coding_transcript_exon_variant | 0.5 |
rrl | 1476311 | n.2654G>C | non_coding_transcript_exon_variant | 0.4 |
rrl | 1476312 | n.2655T>C | non_coding_transcript_exon_variant | 0.4 |
rrl | 1476337 | n.2680C>T | non_coding_transcript_exon_variant | 0.2 |
rrl | 1476357 | n.2700T>C | non_coding_transcript_exon_variant | 0.19 |
rrl | 1476359 | n.2702C>G | non_coding_transcript_exon_variant | 0.95 |
rrl | 1476381 | n.2724G>C | non_coding_transcript_exon_variant | 0.94 |
rrl | 1476428 | n.2771C>T | non_coding_transcript_exon_variant | 0.79 |
rrl | 1476429 | n.2772A>C | non_coding_transcript_exon_variant | 0.65 |
rrl | 1476429 | n.2772A>T | non_coding_transcript_exon_variant | 0.63 |
rrl | 1476466 | n.2809C>T | non_coding_transcript_exon_variant | 0.87 |
rrl | 1476481 | n.2824T>C | non_coding_transcript_exon_variant | 0.56 |
rrl | 1476506 | n.2849T>C | non_coding_transcript_exon_variant | 0.87 |
rrl | 1476513 | n.2856G>T | non_coding_transcript_exon_variant | 0.64 |
rrl | 1476515 | n.2858C>T | non_coding_transcript_exon_variant | 0.77 |
rrl | 1476517 | n.2860C>T | non_coding_transcript_exon_variant | 0.17 |
rrl | 1476523 | n.2866T>C | non_coding_transcript_exon_variant | 0.64 |
rrl | 1476524 | n.2867C>A | non_coding_transcript_exon_variant | 0.76 |
rrl | 1476525 | n.2868A>G | non_coding_transcript_exon_variant | 0.79 |
rrl | 1476528 | n.2871A>G | non_coding_transcript_exon_variant | 0.5 |
rrl | 1476536 | n.2879G>A | non_coding_transcript_exon_variant | 0.78 |
rrl | 1476538 | n.2881A>G | non_coding_transcript_exon_variant | 0.68 |
rrl | 1476539 | n.2882A>G | non_coding_transcript_exon_variant | 0.77 |
rrl | 1476540 | n.2883C>G | non_coding_transcript_exon_variant | 0.26 |
rrl | 1476542 | n.2885T>C | non_coding_transcript_exon_variant | 0.15 |
rrl | 1476567 | n.2910C>T | non_coding_transcript_exon_variant | 0.35 |
rrl | 1476584 | n.2927C>T | non_coding_transcript_exon_variant | 0.75 |
rrl | 1476585 | n.2928A>G | non_coding_transcript_exon_variant | 0.79 |
rrl | 1476594 | n.2937C>A | non_coding_transcript_exon_variant | 0.25 |
rrl | 1476600 | n.2943A>C | non_coding_transcript_exon_variant | 0.56 |
rrl | 1476603 | n.2946G>T | non_coding_transcript_exon_variant | 0.19 |
rrl | 1476607 | n.2950C>T | non_coding_transcript_exon_variant | 0.2 |
rrl | 1476608 | n.2951C>G | non_coding_transcript_exon_variant | 0.8 |
rrl | 1476614 | n.2957A>T | non_coding_transcript_exon_variant | 0.8 |
rrl | 1476616 | n.2959A>G | non_coding_transcript_exon_variant | 0.8 |
rrl | 1476619 | n.2962C>T | non_coding_transcript_exon_variant | 0.75 |
rrl | 1476628 | n.2971T>G | non_coding_transcript_exon_variant | 0.64 |
rrl | 1476629 | n.2972C>A | non_coding_transcript_exon_variant | 0.71 |
rrl | 1476630 | n.2973A>G | non_coding_transcript_exon_variant | 0.18 |
rrl | 1476633 | n.2976A>G | non_coding_transcript_exon_variant | 0.5 |
rrl | 1476661 | n.3004A>G | non_coding_transcript_exon_variant | 0.14 |
rrl | 1476664 | n.3007T>A | non_coding_transcript_exon_variant | 0.33 |
rrl | 1476668 | n.3011C>T | non_coding_transcript_exon_variant | 0.33 |
rrl | 1476675 | n.3018C>A | non_coding_transcript_exon_variant | 0.2 |
rpsA | 1833661 | c.120A>G | synonymous_variant | 0.15 |
rpsA | 1833667 | c.126C>T | synonymous_variant | 0.14 |
rpsA | 1833668 | p.Ile43Val | missense_variant | 0.14 |
rpsA | 1833676 | c.135A>G | synonymous_variant | 0.17 |
rpsA | 1833679 | c.138G>C | synonymous_variant | 0.18 |
rpsA | 1833685 | c.144G>T | synonymous_variant | 0.18 |
rpsA | 1833688 | c.147C>T | synonymous_variant | 0.14 |
rpsA | 1833694 | c.153G>C | synonymous_variant | 0.18 |
rpsA | 1833727 | c.186G>C | synonymous_variant | 0.18 |
rpsA | 1833732 | p.Pro64Leu | missense_variant | 0.15 |
rpsA | 1833736 | c.195C>T | synonymous_variant | 0.15 |
rpsA | 1833742 | c.201A>G | synonymous_variant | 0.16 |
rpsA | 1833994 | c.453G>C | synonymous_variant | 0.12 |
rpsA | 1834009 | c.468C>T | synonymous_variant | 0.17 |
rpsA | 1834012 | c.471G>C | synonymous_variant | 0.17 |
rpsA | 1834015 | c.474G>T | synonymous_variant | 0.17 |
rpsA | 1834024 | c.483G>C | synonymous_variant | 0.14 |
rpsA | 1834195 | c.654G>C | synonymous_variant | 0.2 |
rpsA | 1834210 | c.669C>T | synonymous_variant | 0.18 |
rpsA | 1834213 | c.672G>A | synonymous_variant | 0.15 |
rpsA | 1834228 | c.687C>T | synonymous_variant | 0.24 |
rpsA | 1834234 | c.693G>C | synonymous_variant | 0.24 |
rpsA | 1834240 | c.699T>C | synonymous_variant | 0.13 |
rpsA | 1834246 | c.705G>T | synonymous_variant | 0.28 |
rpsA | 1834249 | c.708T>C | synonymous_variant | 0.34 |
rpsA | 1834261 | c.720A>G | synonymous_variant | 0.42 |
rpsA | 1834264 | c.723G>C | synonymous_variant | 0.39 |
rpsA | 1834285 | c.744G>C | synonymous_variant | 0.22 |
rpsA | 1834294 | c.753G>C | synonymous_variant | 0.26 |
rpsA | 1834298 | p.Gln253Glu | missense_variant | 0.28 |
rpsA | 1834303 | c.762T>C | synonymous_variant | 0.23 |
rpsA | 1834306 | c.765T>C | synonymous_variant | 0.26 |
rpsA | 1834307 | p.Asp256Gln | missense_variant | 0.18 |
rpsA | 1834312 | c.771G>A | synonymous_variant | 0.17 |
rpsA | 1834327 | c.786G>T | synonymous_variant | 0.15 |
rpsA | 1834330 | c.789C>G | synonymous_variant | 0.11 |
rpsA | 1834348 | c.807T>C | synonymous_variant | 0.11 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
katG | 2154724 | p.Arg463Leu | missense_variant | 1.0 |
PPE35 | 2167926 | p.Leu896Ser | missense_variant | 1.0 |
Rv1979c | 2222308 | p.Asp286Gly | missense_variant | 1.0 |
Rv1979c | 2222941 | p.Asn75Ser | missense_variant | 1.0 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
kasA | 2518132 | c.18C>T | synonymous_variant | 1.0 |
ahpC | 2726051 | c.-142G>A | upstream_gene_variant | 1.0 |
ald | 3086788 | c.-32T>C | upstream_gene_variant | 1.0 |
Rv3083 | 3448714 | p.Asp71His | missense_variant | 1.0 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 1.0 |
fprA | 3474597 | c.591C>A | synonymous_variant | 1.0 |
fprA | 3475159 | p.Asn385Asp | missense_variant | 1.0 |
clpC1 | 4040015 | c.690G>C | synonymous_variant | 0.24 |
clpC1 | 4040021 | c.684A>C | synonymous_variant | 0.24 |
clpC1 | 4040024 | c.681A>G | synonymous_variant | 0.26 |
clpC1 | 4040030 | c.675C>G | synonymous_variant | 0.13 |
clpC1 | 4040033 | c.672G>C | synonymous_variant | 0.23 |
clpC1 | 4040042 | c.663C>T | synonymous_variant | 0.15 |
clpC1 | 4040045 | c.660C>G | synonymous_variant | 0.28 |
clpC1 | 4040048 | c.657C>T | synonymous_variant | 0.13 |
clpC1 | 4040057 | c.648C>G | synonymous_variant | 0.19 |
clpC1 | 4040063 | c.642G>C | synonymous_variant | 0.17 |
clpC1 | 4040066 | c.639G>C | synonymous_variant | 0.17 |
clpC1 | 4040069 | c.636G>C | synonymous_variant | 0.28 |
clpC1 | 4040087 | c.618G>C | synonymous_variant | 0.11 |
clpC1 | 4040090 | c.615T>C | synonymous_variant | 0.19 |
clpC1 | 4040096 | c.609G>C | synonymous_variant | 0.23 |
clpC1 | 4040110 | c.595C>A | synonymous_variant | 0.13 |
clpC1 | 4040125 | p.Glu194Lys | missense_variant | 0.12 |
clpC1 | 4040517 | p.Val63Ala | missense_variant | 1.0 |
embC | 4240671 | p.Thr270Ile | missense_variant | 1.0 |
embC | 4241042 | p.Asn394Asp | missense_variant | 1.0 |
embC | 4242132 | p.Val757Ala | missense_variant | 1.0 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embA | 4245969 | p.Pro913Ser | missense_variant | 1.0 |
embB | 4247646 | p.Glu378Ala | missense_variant | 1.0 |
ubiA | 4269387 | p.Glu149Asp | missense_variant | 1.0 |
aftB | 4269606 | c.-770T>C | upstream_gene_variant | 1.0 |
ethA | 4326439 | p.Asn345Lys | missense_variant | 1.0 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |
whiB6 | 4338603 | c.-82C>T | upstream_gene_variant | 1.0 |
gid | 4407588 | c.615A>G | synonymous_variant | 1.0 |
gid | 4407873 | c.330G>T | synonymous_variant | 1.0 |