SRR6046852
|
MDR-TB
|
lineage3
|
None
|
SRR6046839
|
Other
|
lineage4.9
|
None
|
ERR4872077
|
Pre-XDR-TB
|
lineage5.2
|
None
|
SRR1159378
|
Other
|
lineage4.9
|
None
|
SRR18002974
|
Other
|
lineage2.2.1
|
None
|
SRR1735596
|
RR-TB
|
lineage4.9
|
None
|
SRR1140753
|
RR-TB
|
lineage4.3.4.2.1
|
None
|
ERR9117827
|
Other
|
lineage1.2.2.2
|
None
|
SRR18002933
|
Other
|
lineage2.2.1
|
None
|
SRR11342669
|
Other
|
lineage4.8
|
None
|
ERR978756
|
Other
|
lineage4.8
|
None
|
SRR6046616
|
Other
|
lineage4.3.1.1
|
None
|
SRR1791747
|
Other
|
La1.8.1
|
None
|
ERR4814745
|
Other
|
lineage4.6.5
|
None
|
SRR7069800
|
Other
|
lineage3.1.2.1
|
None
|
SRR18002876
|
MDR-TB
|
lineage2.2.1;lineage2.2.2
|
None
|
SRR7645899
|
Other
|
lineage2.2.1
|
None
|
SRR7069255
|
Other
|
lineage4.1.2
|
None
|
SRR7069518
|
Other
|
lineage4.8
|
None
|
ERR10796633
|
Other
|
lineage4.3.4.2
|
None
|
ERR4821119
|
Other
|
lineage4.4.1.1
|
None
|
SRR3675491
|
Other
|
lineage4.7
|
None
|
ERR6866410
|
Sensitive
|
lineage4.9
|
None
|
SRR5341341
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR10315707
|
MDR-TB
|
lineage4.4.1.1.1
|
None
|
ERR978752
|
Other
|
lineage4.8
|
None
|
ERR9907760
|
Pre-XDR-TB
|
lineage4.3
|
None
|
ERR4818050
|
Sensitive
|
lineage4.6.2.2
|
None
|
ERR9117740
|
Other
|
lineage3.1.1
|
None
|
ERR10796581
|
Other
|
lineage4.1.2
|
None
|
ERR2027257
|
Other
|
lineage4.1.2.1
|
None
|
ERR10796620
|
Other
|
lineage4.1.1.1
|
None
|
SRR6045267
|
RR-TB
|
lineage4.8
|
None
|
SRR5007169
|
RR-TB
|
lineage4.8.2
|
None
|
ERR867574
|
Other
|
lineage4.9
|
None
|
SRR5341425
|
Other
|
lineage4.9
|
None
|
ERR4798099
|
Other
|
lineage4.9
|
None
|
ERR4831616
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR7070521
|
Other
|
lineage4.2.1.1
|
None
|
SRR10315579
|
Other
|
lineage2.2.1.1
|
None
|
ERR978762
|
Other
|
lineage4.8
|
None
|
SRR18002984
|
MDR-TB
|
lineage2.2.2
|
None
|
ERR978750_ERR978752_ERR978751
|
RR-TB
|
lineage4.8
|
None
|
SRR18002937
|
Other
|
lineage2.2.1
|
None
|
SRR11349184
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR502510
|
Sensitive
|
lineage4.9
|
None
|
SRR11342686
|
MDR-TB
|
lineage4.8
|
None
|
SRR11342651
|
MDR-TB
|
lineage4.1.1.1
|
None
|
SRR10315696
|
Sensitive
|
lineage4.3.2.1
|
None
|
ERR978755_ERR978756_ERR978754_ERR978757
|
RR-TB
|
lineage4.8
|
None
|
SRR16156817
|
Other
|
lineage4.9
|
None
|
ERR2513298
|
Sensitive
|
lineage4.8
|
gb
|
SRR6046521
|
Other
|
lineage4.4.1.1
|
None
|
ERR10796615
|
Other
|
lineage4.3.3;lineage4.9
|
None
|
SRR14801749
|
HR-TB
|
lineage4.9
|
None
|
SRR11342660
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR867554
|
Other
|
lineage4.3.4.1
|
None
|
SRR7070293
|
Other
|
lineage4.8
|
None
|
SRR6046020
|
Other
|
lineage3
|
None
|
SRR6046447
|
Sensitive
|
lineage4.8
|
gb
|
SRR19304104
|
Other
|
lineage4.8
|
None
|
ERR9117676
|
Sensitive
|
lineage4.2.2.2
|
None
|
ERR4818570
|
Other
|
lineage4.3.3
|
None
|
ERR10796572
|
Other
|
lineage4.3.4.1;lineage4.9
|
None
|
SRR6153166
|
Other
|
lineage1.2.1.2.1
|
ca
|
SRR10808399
|
Sensitive
|
lineage4.9
|
None
|
ERR926161
|
Sensitive
|
lineage4.9
|
None
|
ERR502478
|
RR-TB
|
lineage4.9
|
None
|
SRR18002903
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR6046246
|
Other
|
lineage3
|
None
|
SRR6789624
|
HR-TB
|
lineage4.1.1.3
|
None
|
ERR10796595
|
Other
|
lineage4.9
|
None
|
ERR867572
|
Other
|
lineage4.9
|
None
|
SRR10808805
|
Other
|
La1;lineage4.9
|
None
|
SRR18002985
|
HR-TB
|
lineage2.2.1
|
None
|
SRR18002967
|
HR-TB
|
lineage2.2.1
|
None
|
SRR7069669
|
Other
|
lineage3.1.1
|
None
|
ERR10796596
|
Other
|
lineage4.9
|
None
|
SRR5818612
|
Other
|
lineage4.2.2.2
|
None
|
SRR18003012
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR7069137
|
Other
|
lineage4.8
|
None
|
SRR6046376
|
Other
|
lineage3
|
None
|
ERR9117788
|
Other
|
lineage3
|
None
|
SRR6046668
|
Sensitive
|
lineage1.1.2
|
gb
|
SRR5007193
|
RR-TB
|
lineage4.1.1.3.1
|
None
|
ERR10796583
|
Other
|
lineage2.2.1
|
None
|
SRR6045290
|
RR-TB
|
M.canetti;lineage2.1;lineage4.9
|
None
|
SRR14802079
|
MDR-TB
|
lineage4.2.1
|
None
|
ERR4817189
|
Other
|
lineage4.7
|
None
|
SRR19303815
|
Other
|
lineage4.8
|
None
|
SRR11349203
|
MDR-TB
|
lineage4.4.1.1
|
None
|
ERR971389
|
Sensitive
|
lineage4.9
|
None
|
SRR6046848
|
Other
|
lineage4.6.5
|
None
|
ERR2446154
|
Sensitive
|
lineage4.4.1.1
|
nl
|
ERR9787362
|
Sensitive
|
lineage6
|
None
|
ERR978747
|
Other
|
lineage4.8
|
None
|
SAMN02380982
|
MDR-TB
|
lineage4.3.4.2.1
|
None
|
ERR4821616
|
Other
|
lineage1.1.3.1
|
None
|
ERR133825
|
HR-TB
|
La1;lineage4.9
|
None
|
ERR926164
|
Other
|
lineage4.9
|
None
|
ERR9119120
|
Other
|
lineage4.8
|
None
|
ERR867522
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4820410
|
RR-TB
|
lineage3.1.1
|
None
|
SRR6044904
|
Other
|
lineage3
|
None
|
SRR18002935
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR11342644
|
MDR-TB
|
lineage4.4.1.1.1
|
None
|
ERR4820484
|
Sensitive
|
lineage4.8
|
None
|
ERR4820075
|
Other
|
lineage4.1.2.1
|
None
|
SRR16058249
|
Sensitive
|
lineage4.2.2.2
|
None
|
SRR18002964
|
Other
|
lineage2.2.1
|
None
|
SRR18002994
|
MDR-TB
|
lineage4.2.2
|
None
|
SRR7070154
|
Other
|
lineage4.4.1.1
|
None
|
SRR3675256
|
Other
|
lineage4.7
|
None
|
ERR752012
|
HR-TB
|
lineage1.1.1.1
|
None
|
SRR11342647
|
MDR-TB
|
lineage4.1.1.3
|
None
|
ERR978734_ERR978733_ERR978735
|
RR-TB
|
lineage4.8
|
None
|
ERR4819011
|
Other
|
lineage3.1.2.1
|
None
|
ERR4820833
|
Other
|
lineage3;lineage4.9
|
None
|
SRR3675527
|
Other
|
lineage4.9
|
None
|
ERR867571
|
Other
|
lineage4.9
|
None
|
SRR7070181
|
Other
|
lineage3
|
None
|
ERR4815502
|
Other
|
lineage4.1
|
None
|
SRR7069027
|
MDR-TB
|
lineage4.3.4.2
|
None
|
SRR5341299
|
HR-TB
|
lineage4.9
|
None
|
ERR867573
|
Other
|
lineage4.9
|
None
|
ERR2513121
|
Sensitive
|
lineage3.1.3
|
None
|
SRR1915487
|
Other
|
La1.2.BCG
|
None
|
SRR9971168
|
Other
|
lineage4.3.2.1
|
None
|
ERR10796566
|
Other
|
lineage4.9
|
None
|
SRR11342655
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4819166
|
Other
|
lineage3
|
gb
|
ERR4797264
|
Sensitive
|
lineage4.9
|
None
|
SRR3675265
|
Other
|
lineage4
|
None
|
SRR11349211
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR10796575
|
Other
|
lineage4.3.4;lineage4.9
|
None
|
ERR10796586
|
Other
|
lineage4.9
|
None
|
ERR10796640
|
Other
|
lineage4.1.2.1
|
None
|
SRR18913750
|
Other
|
lineage2.2.1
|
None
|
ERR10796628
|
Other
|
lineage4.3.3
|
None
|
ERR10796564
|
Other
|
lineage4.3.3
|
None
|
SRR5007167
|
RR-TB
|
lineage4.1.1.3.1
|
None
|
SRR22175249
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR6982239
|
Sensitive
|
lineage4.1.1.3
|
None
|
ERR4188247
|
HR-TB
|
lineage4.9
|
None
|
SRR5341455
|
Sensitive
|
lineage4.9
|
None
|
SRR6046208
|
Other
|
lineage4.8
|
None
|
SRR6045957
|
Other
|
lineage4.9
|
None
|
SRR7131229
|
Other
|
lineage4.1.2.1
|
None
|
SRR6045664
|
Other
|
lineage4.2.1
|
None
|
SRR7131123
|
Other
|
lineage4.8
|
None
|
SAMEA3501073
|
RR-TB
|
lineage4.8
|
None
|
ERR2600609
|
Other
|
lineage4.8
|
None
|
ERR4821172
|
RR-TB
|
lineage4.9
|
None
|
SRR7069835
|
Other
|
lineage2.2.1
|
None
|
ERR10796634
|
Other
|
lineage4.7
|
None
|
SRR18909918
|
Other
|
lineage2.2.1.1
|
None
|
SRR7070080
|
Pre-XDR-TB
|
lineage3
|
None
|
SRR11342687
|
RR-TB
|
lineage4.2.2.2
|
None
|
ERR702405
|
Sensitive
|
lineage4.9
|
None
|
SRR7069675
|
Other
|
lineage3
|
None
|
ERR867538
|
Other
|
lineage4.2.2.2
|
None
|
SRR18003038
|
Other
|
lineage2.2.1
|
None
|
ERR867575
|
Other
|
lineage4.9
|
None
|
ERR736848
|
Other
|
lineage4.9
|
None
|
SRR7070369
|
Other
|
lineage1.2.2.2
|
None
|
SRR11972369
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4819002
|
HR-TB
|
lineage4.8
|
None
|
SRR18002963
|
Other
|
lineage2.2.1
|
None
|
SRR7131152
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR323115
|
Sensitive
|
lineage4.9
|
None
|
SRR6045603
|
Other
|
lineage4.1.1.3
|
None
|
ERR978761_ERR978762_ERR978760
|
RR-TB
|
lineage4.8
|
None
|
ERR867567
|
RR-TB
|
lineage3
|
None
|
ERR9787256
|
Other
|
lineage6.1.3
|
None
|
ERR9907785
|
RR-TB
|
lineage4.3.2.1
|
None
|
SRR18002976
|
Other
|
lineage2.2.1
|
None
|
SAMEA3501065
|
RR-TB
|
lineage4.8
|
None
|
SRR19304094
|
Other
|
lineage6.1.2
|
None
|
SRR16627752
|
RR-TB
|
lineage4.4
|
None
|
SRR5007186
|
Sensitive
|
lineage4.6
|
None
|
SRR3675230
|
Other
|
lineage3;lineage4
|
None
|
ERR1063883
|
HR-TB
|
lineage4.9
|
None
|
SRR11972417
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR6981999
|
Sensitive
|
lineage2.2.1
|
None
|
DRR184932
|
Other
|
lineage2.2.1
|
None
|
ERR4818126
|
Other
|
lineage1.2.2
|
None
|
ERR2513904
|
Other
|
lineage3.1.2.2
|
gb
|
SRR9971201
|
MDR-TB
|
lineage4.4.1.1.1
|
None
|
SRR3675389
|
Other
|
lineage4.9
|
None
|
ERR4821704
|
Other
|
lineage4.3.3
|
None
|
SRR13888750
|
Other
|
La2
|
None
|
SRR16156188
|
Sensitive
|
lineage4.9
|
None
|
ERR4797184
|
Sensitive
|
lineage4.9
|
None
|
SRR7645901
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4798769
|
Other
|
lineage1.1.3.3
|
None
|
ERR2515077
|
Sensitive
|
lineage3
|
gb
|
ERR4816198
|
Sensitive
|
lineage4.1.3
|
None
|
ERR502473
|
RR-TB
|
lineage4.9
|
None
|
SRR1184308
|
Sensitive
|
lineage4.9
|
None
|
SRR7070479
|
Other
|
lineage4.1.2
|
None
|
SRR6046484
|
Other
|
lineage1.2.2.2
|
None
|
SRR11342688
|
Other
|
lineage4.2.2.2
|
None
|
SRR18003047
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR867540
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR11342653
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR18003007
|
MDR-TB
|
lineage4.5
|
None
|
SRR7070329
|
Other
|
lineage3
|
None
|
ERR9896153
|
RR-TB
|
lineage4.4.1.1
|
None
|
SRR16089407
|
Other
|
lineage4.8
|
None
|
ERR867523
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR6511621
|
Sensitive
|
lineage4.9
|
None
|
SRR5818586
|
RR-TB
|
lineage4.2.2.2
|
None
|
ERR10796617
|
Other
|
lineage4.3.4.1
|
None
|
SRR7069797
|
Sensitive
|
lineage3
|
None
|
SRR3675509
|
Other
|
lineage4.9
|
None
|
ERR3273109
|
HR-TB
|
lineage4
|
None
|
SAMN02585982
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR12062542
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR751326
|
Other
|
lineage4.9
|
None
|
DRR184629
|
Other
|
lineage2.2.1
|
None
|
SRR7070176
|
Other
|
lineage3
|
None
|
SRR7070266
|
Other
|
lineage1.1.2
|
None
|
SRR18911555
|
Other
|
lineage4.1.2.1
|
None
|
SRR7070087
|
Other
|
lineage4.8.1
|
None
|
SRR11342643
|
MDR-TB
|
lineage4.1.1.1
|
None
|
ERR10796558
|
Sensitive
|
lineage4.3.4.1;lineage4.9
|
None
|
ERR10796582
|
Other
|
lineage4.3.4.1
|
None
|
ERR10796580
|
Other
|
lineage4
|
None
|
ERR10796593
|
Other
|
lineage4.3
|
None
|
SRR11342698
|
RR-TB
|
lineage4.4.1.1
|
None
|
ERR3276170
|
Other
|
lineage4.1.2.1
|
nl
|
SRR7069319
|
Other
|
lineage4.5
|
None
|
ERR978767
|
RR-TB
|
lineage4.8
|
None
|
SRR18002909
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR18213726
|
Other
|
lineage3
|
None
|
SRR6046064
|
Other
|
lineage3
|
gb
|
SRR5341453
|
Other
|
lineage4.9
|
None
|
ERR4829337
|
Sensitive
|
lineage4.8
|
None
|
ERR4813263
|
MDR-TB
|
lineage4.8
|
None
|
ERR978766
|
RR-TB
|
lineage4.8
|
None
|
ERR1035122
|
Sensitive
|
lineage4.9
|
None
|
ERR978767_ERR978765_ERR978766
|
RR-TB
|
lineage4.8
|
None
|
SRR12416842
|
HR-TB
|
lineage4.9
|
None
|
ERR10796631
|
Other
|
lineage4.3.4.2;lineage4.9
|
None
|
ERR8479578
|
Sensitive
|
lineage1.1.3.1
|
None
|
SRR11342638
|
MDR-TB
|
lineage4.4.1.1.1
|
None
|
SRR7069648
|
Other
|
lineage4.6.2.2
|
None
|
SRR3675449
|
Other
|
M.canetti;lineage4.9
|
None
|
ERR10796552
|
Sensitive
|
lineage4.3.4.1
|
None
|
SRR1173740
|
Other
|
lineage3;lineage4
|
None
|
SRR9970978
|
Sensitive
|
La1;lineage4.1.2
|
None
|
SRR11349201
|
MDR-TB
|
lineage4.1.1.3
|
None
|
ERR10796578
|
Other
|
lineage2.2.1
|
None
|
SRR11349153
|
RR-TB
|
lineage4.1.1.1
|
None
|
ERR4821679
|
Other
|
lineage4.3.3
|
None
|
ERR10796553
|
Other
|
lineage4.9
|
None
|
SRR18002980
|
Other
|
lineage2.2.1
|
None
|
SRR11342676
|
HR-TB
|
lineage4.6.2.2
|
None
|
SRR18003052
|
Other
|
lineage2.2.1.1
|
None
|
ERR978735
|
Other
|
lineage4.8
|
None
|
ERR4818691
|
Other
|
lineage4.8
|
None
|
ERR4818407
|
Other
|
lineage4.3.2
|
None
|
ERR4819864
|
RR-TB
|
lineage1.1.3.1
|
None
|
ERR779852
|
Sensitive
|
lineage4.9
|
None
|
ERR502517
|
Other
|
lineage5.1.1
|
None
|
ERR4814617
|
Other
|
lineage1.1.3.1
|
None
|
ERR2514351
|
Sensitive
|
lineage3
|
gb
|
SRR9971032
|
RR-TB
|
lineage2.2.1
|
None
|
SRR6045422
|
Other
|
lineage4.3.1.1
|
None
|
ERR10796598
|
Other
|
lineage4.9
|
None
|
SRR1062871
|
RR-TB
|
lineage4.3.4.2.1
|
None
|
SRR7070515
|
Other
|
lineage1.1.3.1
|
None
|
SRR7070602
|
Other
|
lineage4.2.1
|
None
|
ERR867525
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4796929
|
Sensitive
|
lineage4.9
|
None
|
ERR11465490
|
Sensitive
|
lineage4.1.2.1
|
None
|
ERR4819863
|
RR-TB
|
lineage4.9
|
None
|
ERR11465579
|
Sensitive
|
lineage4.3.4.1
|
None
|
SAMEA3501070
|
RR-TB
|
lineage4.8
|
None
|
ERR4816464
|
Other
|
lineage3
|
None
|
SRR18002987
|
Other
|
lineage2.2.1
|
None
|
SRR6046442
|
Other
|
lineage3
|
None
|
SRR11349159
|
MDR-TB
|
lineage2.2.2
|
None
|
SAMEA3501067
|
RR-TB
|
lineage4.8
|
None
|
SRR7070134
|
Other
|
lineage3.1.1
|
None
|
SRR7131216
|
Other
|
lineage4.1.2.1
|
None
|
ERR978757
|
RR-TB
|
lineage4.8
|
None
|
SRR5341387
|
Other
|
lineage4.9
|
None
|
SRR11349207
|
RR-TB
|
lineage2.2.1
|
None
|
SRR6046291
|
Other
|
lineage3
|
None
|
SRR6046766
|
Other
|
lineage3.1.1
|
None
|
SRR1049559
|
MDR-TB
|
lineage4.3.4.2.1
|
None
|
SRR11342646
|
HR-TB
|
lineage3
|
None
|
ERR9119483
|
Pre-XDR-TB
|
lineage5.2
|
None
|
SRR18003024
|
RR-TB
|
lineage2.2.1
|
None
|
SRR7755649
|
MDR-TB
|
lineage4.2.1
|
None
|
ERR978734
|
RR-TB
|
lineage4.8
|
None
|
SRR12062533
|
Pre-XDR-TB
|
lineage2.2.1.1
|
None
|
SRR5818672
|
Other
|
lineage1.2.2.2
|
None
|
ERR4811101
|
Other
|
lineage4.4.2
|
None
|
ERR978694
|
Other
|
lineage4.8
|
None
|
ERR9811805
|
MDR-TB
|
lineage4.8
|
None
|
SRR12062551
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR11342648
|
MDR-TB
|
lineage4.1.1.3
|
None
|
SRR11342693
|
MDR-TB
|
lineage4.8.1
|
None
|
SRR18002887
|
MDR-TB
|
lineage2.2.1.1
|
None
|
SRR18002981
|
Other
|
lineage2.2.1
|
None
|
SRR22424778
|
RR-TB
|
lineage2.2.1.1
|
None
|
SRR6045778
|
Other
|
lineage3.1
|
None
|
ERR10796627
|
Other
|
lineage4.1.2.1;lineage4.9
|
None
|
ERR970445
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR10315693
|
RR-TB
|
lineage4.1.2
|
None
|
SRR7069097
|
Other
|
lineage3.1.2.1
|
None
|
SRR18003030
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4821286
|
Other
|
lineage4.8
|
None
|
SRR6046273
|
Other
|
lineage3.1.2
|
None
|
SRR18002930
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR978751
|
Other
|
lineage4.8
|
None
|
ERR4818904
|
Other
|
lineage4.8
|
None
|
SAMEA3501063
|
RR-TB
|
lineage4.8
|
None
|
SRR1158918
|
Sensitive
|
lineage4.9
|
None
|
SRR7645928
|
Other
|
lineage4.7
|
None
|
SRR18002874
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR22424765
|
HR-TB
|
lineage4.8
|
None
|
SRR1180252
|
Other
|
lineage4.9
|
None
|
ERR9786592
|
Other
|
lineage4.3.4.2
|
None
|
SRR9970980
|
HR-TB
|
lineage4.1.2
|
None
|
SRR18213721
|
Other
|
lineage4.8
|
None
|
ERR10796626
|
Other
|
lineage4.1.2.1
|
None
|
ERR6358979
|
Other
|
lineage4.9
|
None
|
SRR7070461
|
Other
|
lineage3
|
None
|
SRR3675552
|
Other
|
lineage4.9
|
None
|
SRR7068873
|
Other
|
lineage4.8
|
None
|
SRR6046117
|
Other
|
lineage4.9
|
None
|
ERR10796571
|
Other
|
lineage4.9
|
None
|
ERR10796589
|
Other
|
lineage4.9
|
None
|
ERR3806588
|
Other
|
lineage6.1.3
|
None
|
SRR7070320
|
Other
|
lineage4.8
|
None
|
ERR4457829
|
MDR-TB
|
lineage4.1.2.1
|
None
|
ERR1665404
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SAMEA3501015
|
Other
|
lineage4.8
|
None
|
ERR867526
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR6044983
|
Other
|
lineage3.1.1
|
None
|
ERR926162
|
Sensitive
|
lineage4.9
|
None
|
ERR867555
|
Other
|
lineage3
|
None
|
ERR867569
|
Other
|
lineage4.9
|
None
|
SRR11342642
|
MDR-TB
|
lineage4.1.1.1
|
None
|
ERR4819579
|
HR-TB
|
lineage4.3.3
|
None
|
SRR19303985
|
Sensitive
|
lineage4.8
|
None
|
ERR5908124
|
Other
|
lineage4.8
|
None
|
ERR4820736
|
Sensitive
|
lineage4.1.2.1
|
gb
|
ERR323107
|
Sensitive
|
lineage4.9
|
None
|
SRR11342682
|
Other
|
lineage4.1.2
|
None
|
SRR7069013
|
Other
|
lineage4.8
|
None
|
SRR6045613
|
Other
|
lineage3.1.3
|
None
|
SRR7755645
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR7070535
|
HR-TB
|
lineage4.1.2.1
|
None
|
SRR19303796
|
Other
|
lineage4.3.3
|
None
|
ERR4596904
|
MDR-TB
|
lineage3.1.1
|
None
|
ERR926160
|
Sensitive
|
lineage4.9
|
None
|
ERR736856
|
Sensitive
|
lineage4.9
|
None
|
SRR11342691
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR10809074
|
Sensitive
|
lineage4.9
|
None
|
SRR5341384
|
HR-TB
|
lineage4.9
|
None
|
SRR5818647
|
Other
|
lineage4.3.4.2.1
|
None
|
ERR978748
|
Other
|
lineage4.8
|
None
|
ERR10796563
|
Other
|
lineage4.3.3
|
None
|
SRR6045056
|
Other
|
lineage2.2.1
|
gb
|
SRR6045516
|
Other
|
lineage3.1.1
|
None
|
ERR4816967
|
Other
|
lineage5
|
None
|
ERR4821811
|
Sensitive
|
lineage4.9
|
None
|
ERR124636
|
Sensitive
|
lineage4.9
|
None
|
SRR7069193
|
Other
|
lineage4.3.1.1
|
None
|
ERR911930
|
Other
|
lineage4.8
|
None
|
SRR3675582
|
Other
|
lineage4.9
|
None
|
ERR1063846
|
HR-TB
|
lineage4.9
|
None
|
SRR7069999
|
Sensitive
|
lineage5.1.3
|
None
|
SRR11342689
|
Other
|
lineage4.1.2.1
|
None
|
ERR2027290
|
Other
|
lineage3.1.2.1;lineage4.9
|
None
|
SRR6044841
|
Other
|
lineage4.9
|
None
|
SAMEA3450033
|
Other
|
lineage4.8
|
None
|
SRR11342636
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR18003046
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR6045125
|
Other
|
lineage1.1.2
|
None
|
ERR4820030
|
Other
|
lineage4.9
|
None
|
SRR7069030
|
Other
|
lineage3
|
None
|
ERR926163
|
Other
|
lineage4.9
|
None
|
SRR6046359
|
Other
|
lineage4.7
|
None
|
ERR867541
|
MDR-TB
|
lineage4.2.1
|
None
|
ERR171142
|
Other
|
lineage3.1.1;lineage4.9
|
None
|
ERR926159
|
Sensitive
|
lineage4.9
|
None
|
SRR7070419
|
Other
|
lineage3
|
None
|
ERR2512841
|
HR-TB
|
lineage2.2.1
|
gb
|
SRR18002881
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR926154
|
Sensitive
|
lineage4.9
|
None
|
SRR7535047
|
RR-TB
|
lineage4.6.1.1
|
None
|
ERR2027230
|
Other
|
lineage4.2.2.2
|
None
|
SRR5007168
|
Other
|
lineage4.8.2;lineage4.9
|
None
|
ERR867566
|
Other
|
lineage4.9
|
None
|
DRR185024
|
Other
|
lineage2.2.2
|
None
|
SRR11342696
|
MDR-TB
|
lineage4.4.1.1.1
|
None
|
ERR2886463
|
Sensitive
|
lineage2.2.1
|
None
|
ERR4797193
|
HR-TB
|
lineage1.1.2
|
None
|
SRR9971144
|
RR-TB
|
lineage2.2.1
|
None
|
SRR14801652
|
HR-TB
|
lineage4.3.3
|
None
|
ERR3275615
|
Sensitive
|
lineage4.4.1.1
|
nl
|
SRR18002875
|
MDR-TB
|
lineage2.2.2
|
None
|
SRR18002961
|
Other
|
lineage2.2.1
|
None
|
SRR6045017
|
Other
|
lineage3.1.2.2
|
None
|
SRR18003032
|
Other
|
lineage2.2.1
|
None
|
SRR18002999
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR18003033
|
Other
|
lineage2.2.1
|
None
|
ERR4819324
|
Other
|
lineage4.8
|
gb
|
SRR1173777
|
Sensitive
|
lineage4.9
|
None
|
DRR188816
|
Sensitive
|
lineage4.2.2
|
None
|
SRR1062928
|
Other
|
lineage4.1.2.1;lineage4.9
|
None
|
ERR4819383
|
RR-TB
|
lineage4.9
|
None
|
SRR1915485
|
Other
|
La1.2.BCG
|
None
|
ERR970413
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR736834
|
Sensitive
|
lineage4.9
|
None
|
SRR5341298
|
Sensitive
|
lineage4.9
|
None
|
ERR978726_ERR978727
|
RR-TB
|
lineage4.8
|
None
|
SRR6982246
|
Sensitive
|
lineage4.1.2;lineage4.9
|
None
|
SRR7069074
|
Other
|
lineage3
|
None
|
SRR18002908
|
Other
|
lineage2.2.1
|
None
|
SRR18002998
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SRR9971246
|
MDR-TB
|
lineage4.1.1.3
|
None
|
SRR1062918
|
Other
|
lineage3
|
None
|
ERR9117760
|
HR-TB
|
lineage4.3
|
None
|
SRR5341469
|
HR-TB
|
lineage4.9
|
None
|
SRR11342664
|
MDR-TB
|
lineage2.2.2
|
None
|
SAMEA3501052
|
RR-TB
|
lineage4.8
|
None
|
SRR19303899
|
Other
|
lineage3
|
None
|
ERR10796576
|
Sensitive
|
lineage4.9
|
None
|
ERR10796636
|
Other
|
lineage4.1.2.1
|
None
|
ERR10796577
|
Other
|
lineage4.9
|
None
|
SRR1183965
|
Sensitive
|
lineage4.9
|
None
|
SRR1735598
|
RR-TB
|
lineage4.9
|
None
|
ERR3275996
|
HR-TB
|
lineage4.3.4.1
|
nl
|
ERR4818851
|
RR-TB
|
lineage4.4.1.1
|
None
|
ERR867521
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR1173281
|
Other
|
lineage3
|
None
|
SRR6046729
|
Other
|
lineage3
|
None
|
ERR4815452
|
Other
|
lineage4.3.3
|
None
|
SRR18003002
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR19325518
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR7070256
|
Other
|
lineage4.2.1
|
None
|
SRR18002956
|
Other
|
lineage2.2.1
|
None
|
SRR18003045
|
Other
|
lineage2.2.1
|
None
|
ERR10796599
|
Other
|
lineage4.8
|
None
|
ERR10796597
|
Other
|
lineage4.3.3
|
None
|
ERR926165
|
Sensitive
|
lineage4.9
|
None
|
ERR4821325
|
Other
|
lineage3
|
None
|
SRR6046343
|
Other
|
lineage2.2.1
|
None
|
SRR7069189
|
HR-TB
|
lineage4.1.2.1
|
None
|
SRR7131287
|
Other
|
lineage2.2.1.1
|
None
|
ERR2693252
|
Sensitive
|
lineage4.9
|
None
|
SRR1049725
|
Other
|
lineage4.1.2.1;lineage4.4.1
|
None
|
ERR4817398
|
Other
|
lineage3.1.1
|
None
|
SRR12062493
|
Pre-XDR-TB
|
lineage4.4.2
|
None
|
SRR7236177
|
Other
|
La1.8.1
|
None
|
ERR11465830
|
Sensitive
|
lineage4.9
|
None
|
ERR10796561
|
Other
|
lineage4.3.2
|
None
|
ERR10796591
|
Other
|
lineage4.9
|
None
|
SRR18002947
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR18213736
|
Other
|
lineage3
|
None
|
ERR4596944
|
MDR-TB
|
lineage3.1.1
|
None
|
SRR6045952
|
HR-TB
|
M.canetti;lineage2.1;lineage4.9;lineage6.3
|
None
|
ERR4816690
|
Other
|
|
None
|
SRR19304109
|
Sensitive
|
lineage4.8
|
None
|
ERR4816856
|
Other
|
lineage4.1.2.1
|
None
|
SRR9971017
|
HR-TB
|
lineage2.2.1
|
None
|
SRR9971223
|
Other
|
lineage2.2.1
|
None
|
ERR10796560
|
Other
|
lineage4.9
|
None
|
SRR11567803
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR137286
|
Other
|
lineage4.9
|
None
|
ERR4819593
|
Sensitive
|
lineage4.5
|
None
|
SRR22048536
|
Other
|
lineage4.3.3
|
None
|
SRR7068875
|
Other
|
lineage3.1.2.2
|
None
|
SRR5007161
|
RR-TB
|
lineage4.1.1.3.1;lineage4.9
|
None
|
SRR5007165
|
Other
|
lineage3
|
None
|
ERR11465829
|
Sensitive
|
lineage4.9
|
None
|
ERR10796562
|
Other
|
lineage4.3.4.1
|
None
|
ERR978761
|
Other
|
lineage4.8
|
None
|
ERR978746_ERR978747_ERR978748
|
RR-TB
|
lineage4.8
|
None
|
ERR9117812
|
Other
|
lineage4.3.1.1
|
None
|
SRR11342658
|
RR-TB
|
lineage4.1.2
|
None
|
SRR11342668
|
Pre-XDR-TB
|
lineage4.8.1
|
None
|
SRR11349191
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR9971041
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR9971222
|
RR-TB
|
lineage2.2.1.1
|
None
|
SRR10315558
|
Sensitive
|
lineage2.2.1
|
None
|
SRR11342684
|
HR-TB
|
lineage4.4.1.1
|
None
|
SRR11342640
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR18002941
|
RR-TB
|
lineage2.2.1
|
None
|
SRR6046815
|
Other
|
lineage3
|
None
|
ERR1063896
|
Sensitive
|
|
None
|
ERR867524
|
Pre-XDR-TB
|
lineage4.2.1
|
None
|
SRR21727760
|
Other
|
lineage2.2.1
|
None
|
ERR502474
|
RR-TB
|
lineage4.9
|
None
|
SRR3675214
|
Other
|
lineage4.9
|
None
|
SRR7070553
|
Other
|
lineage3
|
None
|
ERR4817874
|
Other
|
lineage3
|
None
|
ERR2513082
|
Other
|
lineage4.1.2.1
|
gb
|
ERR4024582
|
MDR-TB
|
lineage4.1.2.1
|
None
|
SRR1049560
|
MDR-TB
|
lineage4.3.4.2.1
|
None
|
ERR4820151
|
Other
|
lineage4.8
|
None
|
SRR7131149
|
Pre-XDR-TB
|
lineage4.8
|
None
|
SRR7069033
|
Sensitive
|
lineage4.2.1
|
None
|
ERR323066
|
Sensitive
|
lineage4.9
|
None
|
SRR7645906
|
Other
|
lineage2.2.1
|
None
|
ERR3797029
|
Other
|
lineage4.9
|
None
|
SRR5007204
|
Other
|
lineage4.1.2.1
|
None
|
SRR6045424
|
Other
|
lineage1.1.2
|
None
|
ERR4815780
|
MDR-TB
|
lineage4.1.3
|
None
|
ERR978755
|
RR-TB
|
lineage4.8
|
None
|
SRR10315464
|
MDR-TB
|
lineage4.4.1.1
|
None
|
SRR10993951
|
RR-TB
|
La1.6
|
None
|
ERR867542
|
HR-TB
|
lineage4.2.1.1;lineage4.3.3
|
None
|
SRR18003015
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4822261
|
RR-TB
|
lineage2.2.1
|
None
|
SRR9971200
|
MDR-TB
|
lineage4.3.2
|
None
|
SRR10315556
|
Sensitive
|
lineage2.2.1
|
None
|
SRR7069931
|
Other
|
lineage4.2.2.2
|
None
|
ERR9117763
|
HR-TB
|
lineage3
|
None
|
ERR4816610
|
Other
|
lineage4.3.3
|
None
|
ERR10219876
|
Other
|
lineage4.3.4.2
|
None
|
ERR4818624
|
Other
|
lineage4.3.4.2.1
|
None
|
ERR2600562
|
MDR-TB
|
lineage2.2.1;lineage4.8
|
None
|
ERR4815121
|
HR-TB
|
lineage4.6.2.2
|
None
|
SRR18003013
|
Pre-XDR-TB
|
lineage4.4.2
|
None
|
ERR4814362
|
Other
|
lineage4.8
|
None
|
ERR978694_ERR978693
|
Other
|
lineage4.8
|
None
|
ERR4820891
|
Sensitive
|
lineage4.9
|
gb
|
ERR4831621
|
MDR-TB
|
lineage2.2.1.1
|
None
|
SAMEA3501046
|
RR-TB
|
lineage4.8
|
None
|
SRR7070144
|
Other
|
lineage4.8
|
None
|
ERR4821761
|
Other
|
lineage3
|
gb
|
SRR18003023
|
Other
|
lineage2.2.1
|
None
|
SRR19241806
|
Sensitive
|
lineage4.1.2.1
|
None
|
SRR18002872
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR11342695
|
MDR-TB
|
lineage4.8
|
None
|
SRR1173770
|
Other
|
lineage4.9
|
None
|
SRR9971197
|
MDR-TB
|
lineage4.4.1.1.1
|
None
|
ERR10796635
|
Other
|
lineage4.8
|
None
|
ERR10796555
|
Other
|
lineage4.1.2.1
|
None
|
ERR10796629
|
Other
|
lineage4.1;lineage4.9
|
None
|
SRR11342671
|
RR-TB
|
lineage4.1.3
|
None
|
SRR11342673
|
RR-TB
|
lineage4.3.4.2
|
None
|
SRR9971372
|
MDR-TB
|
lineage4.1.1.1
|
None
|
ERR4797474
|
Sensitive
|
lineage4.9
|
None
|
SRR19303907
|
Other
|
lineage4.8
|
None
|
SRR7070195
|
Sensitive
|
lineage3.1.2.1
|
None
|
SRR7070458
|
Sensitive
|
lineage3
|
None
|
SRR1049726
|
Other
|
lineage4.1.2.1;lineage4.4.1.1
|
None
|
SRR6045002
|
RR-TB
|
lineage4.9
|
None
|
SRR6045909
|
Other
|
lineage4.8.1
|
None
|
SRR18911231
|
Sensitive
|
lineage4.1.1.3
|
None
|
SRR7069671
|
HR-TB
|
lineage3
|
None
|
SRR7069839
|
Other
|
lineage4.8
|
None
|
ERR867544
|
Other
|
lineage4.9
|
None
|
ERR867570
|
RR-TB
|
lineage4.9
|
None
|
ERR2513819
|
Pre-XDR-TB
|
lineage4.3.3
|
gb
|
ERR10796592
|
Other
|
lineage4.9
|
None
|
ERR978727
|
Other
|
lineage4.8
|
None
|
SRR1140736
|
Other
|
lineage4.1.2.1
|
None
|
SRR19303805
|
Sensitive
|
lineage4.8
|
None
|
SRR7535082
|
Sensitive
|
lineage4.9
|
None
|
SRR5818694
|
Other
|
lineage3;lineage4.2.2.2
|
None
|
ERR323062
|
Sensitive
|
lineage4.9
|
None
|
ERR926157
|
Sensitive
|
lineage4.9
|
None
|
SRR1173170
|
Other
|
lineage4.9
|
None
|
SRR11342662
|
MDR-TB
|
lineage4.8.1
|
None
|
ERR9786597
|
Other
|
lineage4.6.2.2
|
None
|
ERR6866547
|
Other
|
La1.7;lineage4.9;lineage6
|
None
|
SRR10808668
|
Sensitive
|
lineage2.2.1
|
None
|
SRR1173568
|
Sensitive
|
lineage4.9
|
None
|
SRR6044936
|
Other
|
lineage4.6
|
None
|
ERR2514173
|
Other
|
lineage4.5
|
gb
|
SRR7131075
|
Other
|
lineage4.8
|
None
|
ERR736872
|
HR-TB
|
lineage4.9
|
None
|
SRR5818622
|
Sensitive
|
lineage4.2.2.2
|
None
|
SRR6046275
|
Other
|
lineage3.1.1;lineage4
|
None
|
ERR4818646
|
Sensitive
|
lineage4.1.2.1
|
None
|
SRR7069922
|
Other
|
lineage2.2.1
|
None
|
ERR911929_ERR911930
|
Other
|
lineage4.8
|
None
|
ERR2027209
|
MDR-TB
|
lineage1.2.1.1
|
None
|
ERR10796565
|
Other
|
lineage4.9
|
None
|
SRR18003004
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SRR18003009
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR867527
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR7070223
|
HR-TB
|
lineage3
|
None
|
ERR978765
|
RR-TB
|
lineage4.8
|
None
|
SRR9971088
|
RR-TB
|
lineage2.2.1
|
None
|
SRR18002891
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR7069347
|
Other
|
lineage4.1.2.1
|
None
|
ERR867568
|
Other
|
lineage2.2.1;lineage4
|
None
|
ERR11465777
|
Sensitive
|
lineage4.1.1.3
|
None
|
ERR4819198
|
Other
|
lineage2.2.1
|
None
|
SRR11349193
|
RR-TB
|
lineage4.1.2
|
None
|
SRR11342649
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR18003042
|
Other
|
lineage2.2.1
|
None
|
SRR19303820
|
RR-TB
|
lineage4.8
|
None
|
SRR6046440
|
Other
|
lineage3.1.2.2
|
None
|
ERR502481
|
RR-TB
|
lineage4.9
|
None
|
SRR14801325
|
Pre-XDR-TB
|
lineage4.2.1
|
None
|