TB-Profiler result

Run: SRR10315556
Summary

Run ID: SRR10315556

Sample name:

Date: 02-04-2023 17:09:17

Number of reads: 3217375

Percentage reads mapped: 52.68

Strain: lineage2.2.1

Drug-resistance: Sensitive

Download CSV Download TXT Download PDF Download JSON
Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
lineage2 East-Asian Beijing RD105 1.0
lineage2.2 East-Asian (Beijing) Beijing-RD207 RD105;RD207 1.0
lineage2.2.1 East-Asian (Beijing) Beijing-RD181 RD105;RD207;RD181 1.0
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
gyrA 7362 p.Glu21Gln missense_variant 1.0
gyrA 7585 p.Ser95Thr missense_variant 1.0
gyrA 9304 p.Gly668Asp missense_variant 1.0
fgd1 491742 c.960T>C synonymous_variant 1.0
mshA 575907 p.Ala187Val missense_variant 1.0
mshA 576108 p.Ala254Gly missense_variant 0.33
ccsA 620625 p.Ile245Met missense_variant 1.0
rpoB 762065 c.2259T>C synonymous_variant 0.14
rpoB 762071 p.Asp755Glu missense_variant 0.17
rpoB 762080 c.2274G>C synonymous_variant 0.25
rpoB 762085 p.Ala760Glu missense_variant 0.29
rpoB 762089 c.2283G>A synonymous_variant 0.29
rpoB 762110 c.2304G>C synonymous_variant 0.3
rpoB 762114 p.Ile770Val missense_variant 0.27
rpoB 762122 p.Asp772Glu missense_variant 0.28
rpoB 762125 c.2319G>A synonymous_variant 0.28
rpoB 762126 p.Val774Ser missense_variant 0.28
rpoB 762134 c.2328C>T synonymous_variant 0.32
rpoB 762143 c.2337T>C synonymous_variant 0.37
rpoB 762149 c.2343G>C synonymous_variant 0.39
rpoB 762156 p.Val784Ile missense_variant 0.39
rpoB 762167 c.2361T>C synonymous_variant 0.39
rpoB 762176 c.2370T>C synonymous_variant 0.38
rpoB 762177 p.Arg791Thr missense_variant 0.38
rpoB 762181 p.Asp792Ala missense_variant 0.37
rpoB 762185 c.2379G>C synonymous_variant 0.37
rpoB 762194 c.2388G>C synonymous_variant 0.38
rpoB 762200 c.2394C>T synonymous_variant 0.37
rpoB 762218 c.2412T>C synonymous_variant 0.35
rpoB 762233 c.2427G>C synonymous_variant 0.19
rpoB 762234 p.Pro810Ser missense_variant 0.2
rpoB 762239 c.2433G>A synonymous_variant 0.19
rpoB 762245 c.2439G>C synonymous_variant 0.19
rpoB 762254 c.2448T>C synonymous_variant 0.19
rpoB 762266 c.2460T>C synonymous_variant 0.18
rpoB 762855 p.Val1017Ile missense_variant 0.17
rpoB 762858 p.Thr1018Ser missense_variant 0.17
rpoC 762863 c.-507T>G upstream_gene_variant 0.17
rpoB 762871 p.Met1022Thr missense_variant 0.17
rpoB 762878 p.Ile1024Met missense_variant 0.17
rpoB 762879 p.Met1025Leu missense_variant 0.17
rpoC 762887 c.-483G>C upstream_gene_variant 0.21
rpoC 762899 c.-471G>C upstream_gene_variant 0.25
rpoC 762926 c.-444C>G upstream_gene_variant 0.31
rpoC 762929 c.-441G>C upstream_gene_variant 0.32
rpoC 762947 c.-423C>G upstream_gene_variant 0.4
rpoC 762971 c.-399G>C upstream_gene_variant 0.43
rpoC 762980 c.-390T>C upstream_gene_variant 0.45
rpoC 762989 c.-381G>C upstream_gene_variant 0.42
rpoC 762995 c.-375G>C upstream_gene_variant 0.41
rpoB 763005 p.Cys1067Val missense_variant 0.39
rpoB 763014 p.Met1070Leu missense_variant 0.39
rpoB 763017 p.Gln1071Glu missense_variant 0.39
rpoC 763022 c.-348C>T upstream_gene_variant 0.4
rpoC 763028 c.-342T>C upstream_gene_variant 0.41
rpoC 763031 c.-339T>C upstream_gene_variant 1.0
rpoB 763038 p.Thr1078Ala missense_variant 0.42
rpoC 763043 c.-327G>C upstream_gene_variant 0.43
rpoC 763053 c.-317T>C upstream_gene_variant 0.41
rpoC 763067 c.-303C>G upstream_gene_variant 0.4
rpoC 763070 c.-300T>C upstream_gene_variant 0.4
rpoB 763077 p.Val1091Thr missense_variant 0.38
rpoC 763103 c.-267G>C upstream_gene_variant 0.22
rpoC 763109 c.-261C>T upstream_gene_variant 0.18
rpoC 763570 c.201G>C synonymous_variant 0.13
rpoC 763589 p.Ile74Val missense_variant 0.13
rpoC 763598 p.Arg77Lys missense_variant 0.14
rpoC 763606 c.237C>T synonymous_variant 0.13
rpoC 763615 c.246G>C synonymous_variant 0.13
rpoC 763630 c.261G>T synonymous_variant 0.13
rpoC 763642 c.273G>C synonymous_variant 0.19
rpoC 763648 c.279C>T synonymous_variant 0.2
rpoC 763657 p.Glu96Asp missense_variant 0.21
rpoC 763660 c.291T>G synonymous_variant 0.21
rpoC 763663 c.294C>G synonymous_variant 0.21
rpoC 763666 c.297G>C synonymous_variant 0.21
rpoC 763675 c.306C>G synonymous_variant 0.23
rpoC 763699 c.330G>T synonymous_variant 0.22
rpoC 763708 c.339G>C synonymous_variant 0.14
rpoC 763714 c.345G>C synonymous_variant 0.12
rpoC 763717 c.348T>C synonymous_variant 0.12
rpoC 763718 p.Leu117Val missense_variant 0.12
rpoC 763723 c.354G>C synonymous_variant 0.12
rpoC 763724 p.Asp119Asn missense_variant 0.12
rpoC 763729 c.360G>C synonymous_variant 0.12
rpoC 763732 c.363C>G synonymous_variant 0.12
rpoC 763735 c.366G>C synonymous_variant 0.13
rpoC 763744 c.375G>C synonymous_variant 0.13
rpoC 763751 p.Ile128Val missense_variant 0.13
rpoC 763772 p.Val135Met missense_variant 0.12
rpoC 764338 p.Glu323Asp missense_variant 0.12
rpoC 764485 c.1116G>C synonymous_variant 0.2
rpoC 764491 c.1122G>T synonymous_variant 0.18
rpoC 764497 c.1128A>G synonymous_variant 0.2
rpoC 764503 c.1134G>T synonymous_variant 0.2
rpoC 764509 c.1140G>C synonymous_variant 0.19
rpoC 764512 c.1143G>C synonymous_variant 0.19
rpoC 764521 c.1152T>C synonymous_variant 0.2
rpoC 764530 c.1161C>T synonymous_variant 0.2
rpoC 764536 c.1167G>C synonymous_variant 0.21
rpoC 764543 p.Thr392Ala missense_variant 0.29
rpoC 764548 c.1179G>C synonymous_variant 0.3
rpoC 764566 c.1197C>G synonymous_variant 0.3
rpoC 764573 p.Leu402Ile missense_variant 0.3
rpoC 764578 c.1209C>G synonymous_variant 0.29
rpoC 764581 c.1212T>C synonymous_variant 0.3
rpoC 764582 p.Leu405Met missense_variant 0.3
rpoC 764593 c.1224C>T synonymous_variant 0.31
rpoC 764602 c.1233C>T synonymous_variant 0.3
rpoC 764605 c.1236G>T synonymous_variant 0.31
rpoC 764611 c.1242G>T synonymous_variant 0.27
rpoC 764626 c.1257C>T synonymous_variant 0.15
rpoC 764632 c.1263T>C synonymous_variant 0.13
mmpL5 775639 p.Ile948Val missense_variant 1.0
mmpL5 776100 p.Thr794Ile missense_variant 1.0
mmpL5 776182 p.Asp767Asn missense_variant 1.0
mmpS5 779615 c.-710C>G upstream_gene_variant 1.0
rpsL 781395 c.-165T>C upstream_gene_variant 1.0
Rv1258c 1406760 c.580_581insC frameshift_variant 1.0
rrs 1471659 n.-187C>T upstream_gene_variant 1.0
rrs 1472068 n.223T>G non_coding_transcript_exon_variant 0.15
rrs 1472075 n.230A>G non_coding_transcript_exon_variant 0.36
rrs 1472078 n.233C>T non_coding_transcript_exon_variant 0.42
rrs 1472108 n.263C>T non_coding_transcript_exon_variant 0.76
rrs 1472122 n.277G>T non_coding_transcript_exon_variant 0.76
rrs 1472123 n.278A>T non_coding_transcript_exon_variant 0.76
rrs 1472124 n.279C>T non_coding_transcript_exon_variant 0.76
rrs 1472150 n.305T>A non_coding_transcript_exon_variant 0.76
rrs 1472155 n.310C>T non_coding_transcript_exon_variant 0.75
rrs 1472160 n.315C>T non_coding_transcript_exon_variant 0.77
rrs 1472225 n.380C>A non_coding_transcript_exon_variant 0.69
rrs 1472251 n.406G>A non_coding_transcript_exon_variant 0.58
rrs 1472379 n.534T>C non_coding_transcript_exon_variant 0.21
rrs 1472400 n.555C>T non_coding_transcript_exon_variant 0.29
rrs 1472412 n.567A>G non_coding_transcript_exon_variant 0.26
rrs 1472416 n.571C>T non_coding_transcript_exon_variant 0.26
rrs 1472422 n.577T>C non_coding_transcript_exon_variant 0.24
rrs 1472427 n.582T>G non_coding_transcript_exon_variant 0.24
rrs 1472435 n.590T>C non_coding_transcript_exon_variant 0.24
rrs 1472436 n.591G>T non_coding_transcript_exon_variant 0.24
rrs 1472437 n.592T>G non_coding_transcript_exon_variant 0.23
rrs 1472438 n.593T>C non_coding_transcript_exon_variant 0.23
rrs 1472448 n.603T>C non_coding_transcript_exon_variant 0.23
rrs 1472449 n.604C>T non_coding_transcript_exon_variant 0.23
rrs 1472450 n.605A>C non_coding_transcript_exon_variant 0.24
rrs 1472451 n.606C>T non_coding_transcript_exon_variant 0.23
rrs 1472462 n.617T>G non_coding_transcript_exon_variant 0.27
rrs 1472464 n.619A>G non_coding_transcript_exon_variant 0.29
rrs 1472473 n.628G>T non_coding_transcript_exon_variant 0.26
rrs 1472474 n.629C>G non_coding_transcript_exon_variant 0.27
rrs 1472476 n.631A>G non_coding_transcript_exon_variant 0.27
rrs 1472484 n.639A>T non_coding_transcript_exon_variant 0.28
rrs 1472489 n.644A>T non_coding_transcript_exon_variant 0.27
rrs 1472494 n.649A>G non_coding_transcript_exon_variant 0.27
rrs 1472496 n.651T>G non_coding_transcript_exon_variant 0.27
rrs 1472498 n.653C>T non_coding_transcript_exon_variant 0.32
rrs 1472513 n.668T>C non_coding_transcript_exon_variant 0.53
rrs 1472549 n.704G>A non_coding_transcript_exon_variant 0.63
rrs 1472581 n.736A>C non_coding_transcript_exon_variant 0.65
rrs 1472584 n.739A>T non_coding_transcript_exon_variant 0.66
rrs 1472647 n.802C>T non_coding_transcript_exon_variant 0.76
rrs 1472655 n.810G>T non_coding_transcript_exon_variant 0.73
rrs 1472660 n.815T>C non_coding_transcript_exon_variant 0.71
rrs 1472686 n.841G>T non_coding_transcript_exon_variant 0.59
rrs 1472687 n.842A>T non_coding_transcript_exon_variant 0.59
rrs 1472690 n.845C>T non_coding_transcript_exon_variant 0.59
rrs 1472692 n.847T>C non_coding_transcript_exon_variant 0.59
rrs 1472707 n.862A>T non_coding_transcript_exon_variant 0.62
rrs 1472714 n.869A>G non_coding_transcript_exon_variant 0.61
rrs 1472790 n.945T>C non_coding_transcript_exon_variant 0.38
rrs 1472824 n.979T>A non_coding_transcript_exon_variant 0.17
rrs 1472825 n.980G>A non_coding_transcript_exon_variant 0.17
rrs 1472828 n.983T>C non_coding_transcript_exon_variant 0.17
rrs 1472895 n.1050C>T non_coding_transcript_exon_variant 0.36
rrs 1472954 n.1109T>C non_coding_transcript_exon_variant 0.65
rrs 1472956 n.1111T>C non_coding_transcript_exon_variant 0.64
rrs 1472957 n.1112C>T non_coding_transcript_exon_variant 0.64
rrs 1472990 n.1145A>G non_coding_transcript_exon_variant 0.67
rrs 1472992 n.1147A>G non_coding_transcript_exon_variant 0.67
rrs 1473005 n.1160C>T non_coding_transcript_exon_variant 0.73
rrs 1473035 n.1190G>A non_coding_transcript_exon_variant 0.75
rrs 1473055 n.1210C>T non_coding_transcript_exon_variant 0.72
rrs 1473056 n.1211A>T non_coding_transcript_exon_variant 0.73
rrs 1473066 n.1221A>G non_coding_transcript_exon_variant 0.72
rrs 1473080 n.1235C>T non_coding_transcript_exon_variant 0.67
rrs 1473081 n.1236C>T non_coding_transcript_exon_variant 0.67
rrs 1473088 n.1243A>G non_coding_transcript_exon_variant 0.66
rrs 1473093 n.1248C>T non_coding_transcript_exon_variant 0.65
rrs 1473100 n.1255G>A non_coding_transcript_exon_variant 0.63
rrs 1473102 n.1257C>T non_coding_transcript_exon_variant 0.62
rrs 1473104 n.1259C>T non_coding_transcript_exon_variant 0.62
rrs 1473110 n.1265T>G non_coding_transcript_exon_variant 0.63
rrs 1473111 n.1266A>G non_coding_transcript_exon_variant 0.62
rrs 1473121 n.1276T>C non_coding_transcript_exon_variant 0.64
rrs 1473123 n.1278A>T non_coding_transcript_exon_variant 0.67
rrs 1473130 n.1285G>A non_coding_transcript_exon_variant 0.68
rrs 1473145 n.1300C>T non_coding_transcript_exon_variant 0.7
rrs 1473166 n.1321G>A non_coding_transcript_exon_variant 0.66
rrs 1473172 n.1327T>G non_coding_transcript_exon_variant 0.64
rrs 1473173 n.1328C>T non_coding_transcript_exon_variant 0.64
rrs 1473221 n.1376C>T non_coding_transcript_exon_variant 0.66
rrs 1473252 n.1407T>C non_coding_transcript_exon_variant 0.69
rrs 1473259 n.1414C>T non_coding_transcript_exon_variant 0.69
rrs 1473276 n.1431A>C non_coding_transcript_exon_variant 0.61
rrs 1473277 n.1432G>A non_coding_transcript_exon_variant 0.6
rrs 1473288 n.1443C>G non_coding_transcript_exon_variant 0.54
rrs 1473289 n.1444_1445insTTTTG non_coding_transcript_exon_variant 0.55
rrs 1473293 n.1449delA non_coding_transcript_exon_variant 0.54
rrs 1473300 n.1455C>T non_coding_transcript_exon_variant 0.55
rrs 1473301 n.1456T>G non_coding_transcript_exon_variant 0.55
rrs 1473316 n.1471C>T non_coding_transcript_exon_variant 0.54
rrl 1473384 n.-274A>G upstream_gene_variant 0.13
rrl 1474181 n.524C>A non_coding_transcript_exon_variant 0.3
rrl 1474184 n.527C>T non_coding_transcript_exon_variant 0.33
rrl 1474197 n.540C>T non_coding_transcript_exon_variant 0.35
rrl 1474199 n.542G>C non_coding_transcript_exon_variant 0.35
rrl 1474200 n.545delT non_coding_transcript_exon_variant 0.36
rrl 1474249 n.592G>T non_coding_transcript_exon_variant 0.5
rrl 1474271 n.614A>G non_coding_transcript_exon_variant 0.47
rrl 1474272 n.615C>T non_coding_transcript_exon_variant 0.47
rrl 1474275 n.618T>G non_coding_transcript_exon_variant 0.47
rrl 1474348 n.691C>T non_coding_transcript_exon_variant 0.23
rrl 1474351 n.694G>T non_coding_transcript_exon_variant 0.22
rrl 1474354 n.697C>T non_coding_transcript_exon_variant 0.21
rrl 1474356 n.699T>C non_coding_transcript_exon_variant 0.21
rrl 1474359 n.702C>G non_coding_transcript_exon_variant 0.22
rrl 1474362 n.705A>G non_coding_transcript_exon_variant 0.22
rrl 1474363 n.706A>T non_coding_transcript_exon_variant 0.22
rrl 1474365 n.708G>C non_coding_transcript_exon_variant 0.22
rrl 1474383 n.726G>T non_coding_transcript_exon_variant 0.25
rrl 1474384 n.727C>G non_coding_transcript_exon_variant 0.25
rrl 1474387 n.730C>T non_coding_transcript_exon_variant 0.25
rrl 1474454 n.797G>A non_coding_transcript_exon_variant 0.37
rrl 1474467 n.810A>G non_coding_transcript_exon_variant 0.55
rrl 1474483 n.826C>T non_coding_transcript_exon_variant 0.59
rrl 1474488 n.831G>T non_coding_transcript_exon_variant 0.58
rrl 1474495 n.838G>A non_coding_transcript_exon_variant 0.61
rrl 1474496 n.839C>G non_coding_transcript_exon_variant 0.61
rrl 1474497 n.840G>A non_coding_transcript_exon_variant 0.6
rrl 1474506 n.849C>T non_coding_transcript_exon_variant 0.63
rrl 1474508 n.851C>T non_coding_transcript_exon_variant 0.62
rrl 1474516 n.859C>A non_coding_transcript_exon_variant 0.62
rrl 1474527 n.870T>C non_coding_transcript_exon_variant 0.59
rrl 1474528 n.871T>A non_coding_transcript_exon_variant 0.59
rrl 1474529 n.872A>G non_coding_transcript_exon_variant 0.59
rrl 1474537 n.880G>A non_coding_transcript_exon_variant 0.58
rrl 1474540 n.883T>C non_coding_transcript_exon_variant 0.57
rrl 1474541 n.884G>T non_coding_transcript_exon_variant 0.58
rrl 1474542 n.885A>G non_coding_transcript_exon_variant 0.59
rrl 1474551 n.894G>A non_coding_transcript_exon_variant 0.66
rrl 1474626 n.969T>C non_coding_transcript_exon_variant 0.7
rrl 1474634 n.977T>C non_coding_transcript_exon_variant 0.69
rrl 1474636 n.979A>C non_coding_transcript_exon_variant 0.71
rrl 1474637 n.980C>T non_coding_transcript_exon_variant 0.71
rrl 1474638 n.981C>G non_coding_transcript_exon_variant 0.71
rrl 1474640 n.983C>T non_coding_transcript_exon_variant 0.72
rrl 1474674 n.1018delC non_coding_transcript_exon_variant 0.81
rrl 1474677 n.1020A>G non_coding_transcript_exon_variant 0.81
rrl 1474709 n.1052G>A non_coding_transcript_exon_variant 0.8
rrl 1474722 n.1065T>C non_coding_transcript_exon_variant 0.83
rrl 1474734 n.1077G>T non_coding_transcript_exon_variant 0.86
rrl 1474749 n.1092C>T non_coding_transcript_exon_variant 0.85
rrl 1474753 n.1097delC non_coding_transcript_exon_variant 0.85
rrl 1474760 n.1103A>G non_coding_transcript_exon_variant 0.85
rrl 1474779 n.1122G>A non_coding_transcript_exon_variant 0.84
rrl 1474780 n.1123C>T non_coding_transcript_exon_variant 0.83
rrl 1474782 n.1125G>A non_coding_transcript_exon_variant 0.84
rrl 1474794 n.1137C>T non_coding_transcript_exon_variant 0.84
rrl 1474801 n.1144G>A non_coding_transcript_exon_variant 0.83
rrl 1474802 n.1145T>C non_coding_transcript_exon_variant 0.83
rrl 1474823 n.1166C>G non_coding_transcript_exon_variant 0.83
rrl 1474830 n.1173A>G non_coding_transcript_exon_variant 0.81
rrl 1474831 n.1174A>G non_coding_transcript_exon_variant 0.8
rrl 1474832 n.1175A>T non_coding_transcript_exon_variant 0.81
rrl 1474864 n.1207C>T non_coding_transcript_exon_variant 0.77
rrl 1474901 n.1244A>G non_coding_transcript_exon_variant 0.54
rrl 1474904 n.1247G>C non_coding_transcript_exon_variant 0.5
rrl 1474913 n.1256T>C non_coding_transcript_exon_variant 0.5
rrl 1474933 n.1276A>G non_coding_transcript_exon_variant 0.31
rrl 1474934 n.1277C>T non_coding_transcript_exon_variant 0.28
rrl 1475532 n.1875A>G non_coding_transcript_exon_variant 0.12
rrl 1475659 n.2002G>A non_coding_transcript_exon_variant 0.26
rrl 1475672 n.2015C>T non_coding_transcript_exon_variant 0.42
rrl 1475673 n.2016T>C non_coding_transcript_exon_variant 0.44
rrl 1475686 n.2029C>G non_coding_transcript_exon_variant 0.56
rrl 1475696 n.2039T>C non_coding_transcript_exon_variant 0.61
rrl 1475699 n.2042C>T non_coding_transcript_exon_variant 0.64
rrl 1475703 n.2046A>G non_coding_transcript_exon_variant 0.64
rrl 1475715 n.2058G>C non_coding_transcript_exon_variant 0.7
rrl 1475751 n.2094C>A non_coding_transcript_exon_variant 0.71
rrl 1475756 n.2099T>C non_coding_transcript_exon_variant 0.7
rrl 1475760 n.2103C>A non_coding_transcript_exon_variant 0.69
rrl 1475764 n.2107A>G non_coding_transcript_exon_variant 0.68
rrl 1475765 n.2108A>G non_coding_transcript_exon_variant 0.69
rrl 1475767 n.2110G>T non_coding_transcript_exon_variant 0.67
rrl 1475777 n.2120A>T non_coding_transcript_exon_variant 0.71
rrl 1475883 n.2226A>C non_coding_transcript_exon_variant 0.76
rrl 1475884 n.2227A>G non_coding_transcript_exon_variant 0.76
rrl 1475896 n.2239A>G non_coding_transcript_exon_variant 0.76
rrl 1475897 n.2240T>C non_coding_transcript_exon_variant 0.76
rrl 1475898 n.2241A>G non_coding_transcript_exon_variant 0.77
rrl 1475899 n.2242G>A non_coding_transcript_exon_variant 0.77
rrl 1475906 n.2249C>T non_coding_transcript_exon_variant 0.78
rrl 1475916 n.2259C>G non_coding_transcript_exon_variant 0.78
rrl 1475937 n.2280A>T non_coding_transcript_exon_variant 0.77
rrl 1475943 n.2286G>A non_coding_transcript_exon_variant 0.75
rrl 1475945 n.2288C>A non_coding_transcript_exon_variant 0.74
rrl 1475952 n.2295A>G non_coding_transcript_exon_variant 0.72
rrl 1475970 n.2313C>T non_coding_transcript_exon_variant 0.64
rrl 1475975 n.2318C>T non_coding_transcript_exon_variant 0.61
rrl 1475977 n.2320A>G non_coding_transcript_exon_variant 0.6
rrl 1475988 n.2331A>G non_coding_transcript_exon_variant 0.53
rrl 1475995 n.2338G>C non_coding_transcript_exon_variant 0.38
rrl 1475997 n.2340A>T non_coding_transcript_exon_variant 0.33
rrl 1475998 n.2341C>G non_coding_transcript_exon_variant 0.34
rrl 1476000 n.2343G>A non_coding_transcript_exon_variant 0.32
rrl 1476001 n.2344T>C non_coding_transcript_exon_variant 0.32
rrl 1476179 n.2522C>T non_coding_transcript_exon_variant 0.2
rrl 1476194 n.2537A>G non_coding_transcript_exon_variant 0.18
rrl 1476200 n.2543A>T non_coding_transcript_exon_variant 0.17
rrl 1476201 n.2544C>T non_coding_transcript_exon_variant 0.18
rrl 1476204 n.2547C>T non_coding_transcript_exon_variant 0.18
rrl 1476221 n.2564T>C non_coding_transcript_exon_variant 0.14
rrl 1476224 n.2567A>G non_coding_transcript_exon_variant 0.14
rrl 1476359 n.2702C>G non_coding_transcript_exon_variant 0.63
rrl 1476381 n.2724G>C non_coding_transcript_exon_variant 0.69
rrl 1476428 n.2771C>T non_coding_transcript_exon_variant 0.69
rrl 1476429 n.2772A>T non_coding_transcript_exon_variant 0.68
rrl 1476466 n.2809C>T non_coding_transcript_exon_variant 0.72
rrl 1476481 n.2824T>C non_coding_transcript_exon_variant 0.69
rrl 1476506 n.2849T>C non_coding_transcript_exon_variant 0.59
rrl 1476513 n.2856G>T non_coding_transcript_exon_variant 0.53
rrl 1476515 n.2858C>T non_coding_transcript_exon_variant 0.51
rrl 1476517 n.2860C>T non_coding_transcript_exon_variant 0.52
rrl 1476523 n.2866T>C non_coding_transcript_exon_variant 0.51
rrl 1476524 n.2867C>A non_coding_transcript_exon_variant 0.5
rrl 1476525 n.2868A>G non_coding_transcript_exon_variant 0.5
rrl 1476530 n.2873C>T non_coding_transcript_exon_variant 0.51
rrl 1476536 n.2879G>A non_coding_transcript_exon_variant 0.5
rrl 1476538 n.2881A>G non_coding_transcript_exon_variant 0.5
rrl 1476539 n.2882A>G non_coding_transcript_exon_variant 0.5
rrl 1476540 n.2883C>G non_coding_transcript_exon_variant 0.5
rrl 1476542 n.2885T>C non_coding_transcript_exon_variant 0.51
rrl 1476567 n.2910C>T non_coding_transcript_exon_variant 0.56
rrl 1476584 n.2927C>T non_coding_transcript_exon_variant 0.44
rrl 1476585 n.2928A>G non_coding_transcript_exon_variant 0.44
rrl 1476594 n.2937C>A non_coding_transcript_exon_variant 0.39
rrl 1476603 n.2946G>T non_coding_transcript_exon_variant 0.23
rrl 1476607 n.2950C>T non_coding_transcript_exon_variant 0.17
rrl 1476608 n.2951C>G non_coding_transcript_exon_variant 0.16
rrl 1476614 n.2957A>T non_coding_transcript_exon_variant 0.15
rrl 1476616 n.2959A>G non_coding_transcript_exon_variant 0.15
rrl 1476619 n.2962C>T non_coding_transcript_exon_variant 0.15
rrl 1476628 n.2971T>A non_coding_transcript_exon_variant 0.15
rrl 1476629 n.2972C>A non_coding_transcript_exon_variant 0.15
rrl 1476630 n.2973A>G non_coding_transcript_exon_variant 0.15
rpsA 1833949 c.408T>C synonymous_variant 0.19
rpsA 1833970 c.429G>C synonymous_variant 0.34
rpsA 1833976 c.435C>T synonymous_variant 0.35
rpsA 1833979 c.438T>C synonymous_variant 0.35
rpsA 1833994 c.453G>C synonymous_variant 0.35
rpsA 1833997 c.456G>C synonymous_variant 0.35
rpsA 1834000 c.459G>C synonymous_variant 0.33
rpsA 1834009 c.468C>T synonymous_variant 0.34
rpsA 1834012 c.471G>C synonymous_variant 0.34
rpsA 1834015 c.474G>C synonymous_variant 0.35
rpsA 1834024 c.483G>C synonymous_variant 0.33
rpsA 1834025 p.Gln162Ala missense_variant 0.33
rpsA 1834039 c.498C>T synonymous_variant 0.34
rpsA 1834040 p.Lys167Arg missense_variant 0.34
rpsA 1834051 c.510G>A synonymous_variant 0.37
rpsA 1834054 c.513C>G synonymous_variant 0.37
rpsA 1834069 c.528G>C synonymous_variant 0.37
rpsA 1834093 c.552G>C synonymous_variant 0.26
rpsA 1834102 c.561T>C synonymous_variant 0.18
rpsA 1834177 c.636A>C synonymous_variant 1.0
rpsA 1834195 c.654G>C synonymous_variant 0.14
rpsA 1834228 c.687C>T synonymous_variant 0.28
rpsA 1834234 c.693G>C synonymous_variant 0.27
rpsA 1834240 c.699T>C synonymous_variant 0.28
rpsA 1834246 c.705G>T synonymous_variant 0.29
rpsA 1834249 c.708T>C synonymous_variant 0.3
rpsA 1834261 c.720A>G synonymous_variant 0.34
rpsA 1834264 c.723G>C synonymous_variant 0.33
rpsA 1834294 c.753G>C synonymous_variant 0.35
rpsA 1834298 p.Gln253Glu missense_variant 0.35
rpsA 1834306 c.765T>C synonymous_variant 0.37
rpsA 1834307 p.Asp256Gln missense_variant 0.36
rpsA 1834312 c.771G>A synonymous_variant 0.36
rpsA 1834327 c.786G>T synonymous_variant 0.34
rpsA 1834345 c.804C>T synonymous_variant 0.24
rpsA 1834348 c.807T>C synonymous_variant 0.23
rpsA 1834354 c.813G>C synonymous_variant 0.2
rpsA 1834357 c.816T>C synonymous_variant 0.18
rpsA 1834360 c.819G>C synonymous_variant 0.18
rpsA 1834361 c.820T>C synonymous_variant 0.18
rpsA 1834366 c.825A>G synonymous_variant 0.18
rpsA 1834375 c.834G>C synonymous_variant 0.2
rpsA 1834378 c.837T>C synonymous_variant 0.2
rpsA 1834387 c.846C>T synonymous_variant 0.2
rpsA 1834411 c.870T>C synonymous_variant 0.15
rpsA 1834417 c.876G>C synonymous_variant 0.13
rpsA 1834423 c.882G>C synonymous_variant 0.11
tlyA 1917972 c.33A>G synonymous_variant 1.0
katG 2154724 p.Arg463Leu missense_variant 1.0
PPE35 2167926 p.Leu896Ser missense_variant 1.0
Rv1979c 2223293 c.-129A>G upstream_gene_variant 1.0
ald 3086788 c.-32T>C upstream_gene_variant 1.0
fbiD 3339734 p.Ala206Gly missense_variant 0.36
fprA 3473996 c.-11_-10insA upstream_gene_variant 1.0
Rv3236c 3612813 p.Thr102Ala missense_variant 1.0
clpC1 4039610 c.1095G>C synonymous_variant 0.1
clpC1 4039616 c.1089G>C synonymous_variant 0.1
clpC1 4039966 p.Leu247Ile missense_variant 0.13
clpC1 4039981 p.Leu242Ile missense_variant 0.2
clpC1 4039994 p.Glu237Asp missense_variant 0.23
clpC1 4040009 c.696C>G synonymous_variant 0.26
clpC1 4040015 c.690G>C synonymous_variant 0.27
clpC1 4040018 c.687G>C synonymous_variant 0.27
clpC1 4040021 c.684A>C synonymous_variant 0.27
clpC1 4040042 c.663C>T synonymous_variant 0.25
clpC1 4040057 c.648C>T synonymous_variant 0.22
clpC1 4040066 c.639G>C synonymous_variant 0.23
clpC1 4040081 c.624C>G synonymous_variant 0.2
clpC1 4040087 c.618G>C synonymous_variant 0.19
clpC1 4040090 c.615T>G synonymous_variant 0.19
clpC1 4040096 c.609G>C synonymous_variant 0.17
embA 4242643 c.-590C>T upstream_gene_variant 1.0
embA 4243460 c.228C>T synonymous_variant 1.0
embB 4246584 p.Arg24Pro missense_variant 0.26
aftB 4267647 p.Asp397Gly missense_variant 1.0
whiB6 4338595 c.-75delG upstream_gene_variant 1.0
gid 4407588 c.615A>G synonymous_variant 1.0
gid 4407620 p.Tyr195His missense_variant 1.0
gid 4407927 p.Glu92Asp missense_variant 1.0