EBG00000313339 - n.894G>A
Drug resistance types
17 Sensitive
23 RR-TB
4 HR-TB
19 MDR-TB
4 Pre-XDR-TB
0 XDR-TB
93 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.1.1.3.1 | 3 |
| lineage3 | 21 |
| lineage4.8.2 | 1 |
| lineage4.9 | 18 |
| lineage4.1.2.1 | 9 |
| lineage4.4.1.1 | 7 |
| lineage4.8 | 9 |
| lineage4.3.4.2 | 1 |
| lineage2.2.1.1 | 4 |
| lineage4.3.1.1 | 4 |
| lineage4.1.1.3 | 4 |
| lineage4.6.2.2 | 4 |
| lineage4.2.1 | 2 |
| lineage3.1 | 2 |
| lineage4 | 7 |
| lineage3.1.1 | 5 |
| lineage4.2.1.1 | 1 |
| lineage2.2.1 | 18 |
| lineage1.1.2 | 4 |
| lineage4.7 | 2 |
| lineage4.1.1 | 2 |
| lineage1.1.3.3 | 1 |
| lineage1.1.3.1 | 1 |
| lineage4.2.2.2 | 3 |
| lineage3.1.2 | 1 |
| lineage3.1.2.2 | 2 |
| lineage1.1.1.1 | 1 |
| 2 | |
| lineage4.6.5 | 1 |
| lineage4.4.2 | 1 |
| lineage4.3.2 | 1 |
| lineage4.3 | 1 |
| lineage4.3.3 | 3 |
| lineage4.6 | 2 |
| lineage4.3.4.1 | 1 |
| lineage1.2.2.2 | 2 |
| lineage4.3.2.1 | 1 |
| lineage4.1.2 | 1 |
| lineage4.4.1.1.1 | 1 |
| lineage2.2.2 | 2 |
| lineage6 | 1 |
| lineage4.4.1.2 | 1 |
| lineage1.2.1.1 | 2 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 160 |
Geographic prevalence
Country level data for this variant is available for 18 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR5007161 | RR-TB | lineage4.1.1.3.1 | None | SRR5007165 | MDR-TB | lineage3 | None | SRR5007169 | RR-TB | lineage4.8.2 | None | SRR5007167 | RR-TB | lineage4.1.1.3.1 | None | SRR5007170 | RR-TB | lineage4.9 | None | ERR4820777 | Other | lineage4.1.2.1 | None | SRR5007193 | RR-TB | lineage4.1.1.3.1 | None | ERR2446154 | Sensitive | lineage4.4.1.1 | nl | ERR4819305 | RR-TB | lineage4.9 | None | ERR3275239 | Sensitive | lineage4.8 | nl | ERR3275615 | Sensitive | lineage4.4.1.1 | nl | ERR4820746 | RR-TB | lineage3 | None | SRR6045447 | Other | lineage3 | gb | ERR4819706 | MDR-TB | lineage4.3.4.2 | None | ERR4820862 | Other | lineage2.2.1.1 | None | ERR4820968 | Other | lineage4.1.2.1 | gb | SRR6045422 | Other | lineage4.3.1.1 | None | SRR6045464 | Other | lineage4.1.1.3 | None | SRR6045485 | Other | lineage4.9 | None | SRR6045805 | Other | lineage4.3.1.1 | None | SRR6045565 | Other | lineage4.6.2.2 | None | SRR6045603 | RR-TB | lineage4.1.1.3 | None | SRR6045664 | Other | lineage4.2.1 | None | SRR6045705 | Other | lineage4.9 | None | SRR6045743 | Other | lineage3 | None | SRR6045778 | Other | lineage3.1 | None | SRR6044784 | MDR-TB | lineage3 | None | SRR5818663 | Sensitive | lineage4.1.2.1 | dj | SRR6045944 | Other | lineage4.1.2.1 | None | SRR6045909 | Other | lineage4.8 | None | SRR6044904 | Other | lineage3 | None | SRR6044958 | Other | lineage4.4.1.1 | None | SRR6044936 | Other | lineage4 | None | SRR6044945 | HR-TB | lineage4.1.2.1 | gb | SRR6044983 | Other | lineage3.1.1 | None | SRR6044993 | Other | lineage3 | None | SRR6045052 | HR-TB | lineage4.2.1.1 | None | SRR6045056 | Other | lineage2.2.1 | gb | SRR6046020 | Other | lineage3 | None | SRR6045125 | Other | lineage1.1.2 | None | SRR6045295 | Other | lineage4.7 | None | SRR6045243 | Sensitive | lineage4.1.1 | gb | SRR6045267 | RR-TB | lineage4 | None | SRR6046064 | Other | lineage3 | gb | SRR6045312 | Other | lineage1.1.3.3 | None | SRR6045321 | Other | lineage1.1.3.1 | None | SRR6046246 | Other | lineage3 | None | SRR6045424 | Other | lineage1.1.2 | None | SRR6045843 | Other | lineage4.2.2.2 | None | SRR6046359 | Other | lineage4.7 | None | SRR6046275 | Other | lineage3.1.1 | None | SRR6046273 | Other | lineage3.1.2 | None | SRR6046291 | Other | lineage3 | None | SRR6046440 | Other | lineage3.1.2.2 | None | SRR6046343 | Other | lineage2.2.1 | None | SRR6046447 | Sensitive | lineage4.8 | gb | SRR6046463 | Other | lineage4.4.1.1 | None | SRR6046521 | Other | lineage4.4.1.1 | None | SRR6046616 | Other | lineage4.3.1.1 | None | SRR6046612 | Other | lineage1.1.1.1 | None | SRR6046679 | Other | lineage3 | gb | SRR6046668 | Sensitive | lineage1.1.2 | gb | SRR6046701 | Other | lineage3.1.2.2 | None | SRR6046729 | Other | None | SRR6046818 | Other | lineage4.2.1 | gb | SRR6046733 | Pre-XDR-TB | lineage2.2.1 | None | SRR6046766 | Other | lineage3.1.1 | None | SRR6046905 | Other | lineage3 | gb | SRR6046815 | Other | lineage3 | None | SRR6046848 | Other | lineage4.6.5 | None | SRR6046852 | MDR-TB | lineage3 | None | SRR6397642 | RR-TB | None | SRR9971246 | MDR-TB | lineage4.1.1.3 | None | SRR7131152 | MDR-TB | lineage2.2.1 | None | SRR7131004 | Other | lineage4.6.2.2 | None | SRR7131221 | Other | lineage4.6.2.2 | None | ERR10796558 | Sensitive | lineage4 | None | SRR7131287 | Other | lineage2.2.1.1 | None | SRR9971088 | RR-TB | lineage2.2.1 | None | SRR8651633 | Pre-XDR-TB | lineage4.4.2 | None | ERR10796555 | Other | lineage4.1.2.1 | None | ERR10796561 | Other | lineage4.3.2 | None | ERR10796582 | HR-TB | lineage4.3 | None | ERR10796563 | Other | lineage4.3.3 | None | ERR10796564 | Other | lineage4.3.3 | None | ERR10796574 | Other | lineage4.9 | None | ERR10796575 | RR-TB | lineage4.9 | None | ERR10796577 | RR-TB | lineage4.9 | None | ERR10796578 | Other | lineage2.2.1 | None | ERR10796580 | RR-TB | lineage4.6 | None | ERR10796595 | Other | lineage4.9 | None | ERR10796583 | Other | lineage2.2.1 | None | ERR10796586 | Other | lineage4.9 | None | ERR10796599 | Other | lineage4 | None | ERR10796598 | RR-TB | lineage4.9 | None | ERR10796618 | Other | lineage4.3.4.1 | None | ERR10796615 | Other | lineage4 | None | ERR10796620 | Other | lineage4.1.1 | None | ERR10796635 | Other | lineage4 | None | ERR10796627 | Other | lineage4 | None | ERR6197024 | RR-TB | lineage4.9 | None | ERR9117678 | Other | lineage4.6.2.2 | None | ERR9117729 | Other | lineage3 | None | ERR9117676 | Other | lineage4.2.2.2 | None | ERR9117788 | Other | lineage3 | None | ERR9117732 | Other | lineage1.2.2.2 | None | ERR9117740 | Other | lineage3.1.1 | None | ERR9117763 | HR-TB | lineage3 | None | ERR9117812 | Other | lineage4.3.1.1 | None | ERR9117806 | Other | lineage4.8 | None | SRR10315556 | Sensitive | lineage2.2.1 | None | ERR9117827 | Other | lineage1.2.2.2 | None | SRR10315464 | MDR-TB | lineage4.4.1.1 | None | ERR9285844 | Sensitive | lineage3.1.1 | None | ERR9896153 | RR-TB | lineage4.4.1.1 | None | SRR10315579 | Other | lineage2.2.1.1 | None | SRR10315640 | MDR-TB | lineage4.8 | None | SRR10315696 | Sensitive | lineage4.3.2.1 | None | SRR10315693 | RR-TB | lineage4.1.2 | None | SRR10315707 | MDR-TB | lineage4.4.1.1.1 | None | SRR1181161 | Other | lineage4.9 | None | SRR11342688 | Other | lineage4.2.2.2 | None | SRR1180252 | Other | lineage4.9 | None | SRR1183080 | RR-TB | lineage4.9 | None | SRR1181250 | Other | lineage4.9 | None | SRR14801652 | MDR-TB | lineage4.3.3 | None | SRR1735591 | Other | lineage4.1.2.1 | None | SRR15014615 | MDR-TB | lineage1.1.2 | None | SRR18002875 | MDR-TB | lineage2.2.2 | None | SRR18002908 | Other | lineage2.2.1 | None | SRR18002903 | Pre-XDR-TB | lineage2.2.1 | None | SRR18002930 | MDR-TB | lineage2.2.1 | None | SRR18003002 | MDR-TB | lineage2.2.1 | None | SRR18002947 | MDR-TB | lineage2.2.1 | None | SRR18002976 | Other | lineage2.2.1 | None | SRR18003004 | Pre-XDR-TB | lineage2.2.2 | None | SRR18003042 | Other | lineage2.2.1 | None | SRR18911231 | Sensitive | lineage4.1.1.3 | None | SRR18213726 | Other | lineage3 | None | SRR18003047 | MDR-TB | lineage2.2.1 | None | SRR18213736 | MDR-TB | lineage3 | None | SRR19304094 | Other | lineage6 | None | SRR18913750 | Other | lineage2.2.1 | None | SRR19303808 | Sensitive | lineage4.1.2.1 | None | SRR19303985 | Other | lineage4.8 | None | SRR19304057 | Sensitive | lineage4.4.1.2 | None | SRR19325518 | MDR-TB | lineage2.2.1 | None | SRR22048392 | Other | lineage4.8 | None | SRR22048374 | Sensitive | lineage4.8 | None | SRR3675230 | RR-TB | lineage3 | None | SRR3675261 | Other | lineage1.2.1.1 | None | ERR4814896 | Other | lineage2.2.1.1 | None | SRR3675291 | Sensitive | lineage4.6 | gb | ERR4818691 | Other | lineage4.8 | None | SRR3675552 | RR-TB | lineage4.9 | None | SRR3675527 | RR-TB | lineage4.9 | None | ERR2027209 | MDR-TB | lineage1.2.1.1 | None | ERR2027290 | RR-TB | lineage3.1 | None | ERR4817187 | Sensitive | lineage4.9 | gb | ERR3276170 | Other | lineage4.1.2.1 | nl |
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