lineage | Count |
---|---|
lineage4.9 | 18 |
lineage4.3.3 | 4 |
lineage2.2 | 3 |
lineage4 | 7 |
9 | |
lineage2.2.1 | 21 |
lineage3.1.2.1 | 1 |
lineage2.2.1.2 | 2 |
lineage2.2.2 | 1 |
lineage3 | 4 |
lineage4.4.2 | 1 |
lineage4.8 | 5 |
lineage2.2.1.1 | 1 |
lineage4.1 | 1 |
lineage3.1 | 1 |
lineage4.5 | 1 |
lineage4.1.1.3.1 | 3 |
lineage4.4.1.1 | 2 |
lineage4.8.2 | 1 |
lineage4.2.2 | 1 |
lineage1.1.3.1 | 1 |
lineage3.1.1 | 1 |
lineage4.3.4.2.1 | 1 |
lineage4.7 | 1 |
lineage4.3.1.1 | 1 |
lineage5.1.1 | 1 |
spoligotype | Count |
---|---|
None | 93 |
ID | Drug resistance | Lineage | Country iso2 | ERR323048 | Pre-XDR-TB | lineage4.9 | None | ERR10796564 | Other | lineage4.3.3 | None | ERR10796596 | Other | lineage4.9 | None | ERR10796565 | RR-TB | lineage4.9 | None | ERR10796591 | MDR-TB | lineage4.9 | None | ERR4799513 | HR-TB | lineage2.2 | None | ERR10796629 | Other | lineage4 | None | ERR3797065 | MDR-TB | lineage4 | None | ERR4769452 | HR-TB | None | ERR4769450 | HR-TB | None | ERR4796351 | MDR-TB | lineage4.9 | None | ERR10796598 | RR-TB | lineage4.9 | None | ERR10796628 | Other | lineage4.3.3 | None | ERR108125 | Pre-XDR-TB | lineage4.9 | None | ERR3283046 | MDR-TB | lineage4.9 | None | ERR4769457 | Other | lineage4.9 | None | ERR4799025 | Pre-XDR-TB | None | SRR10315556 | Sensitive | lineage2.2.1 | None | ERR4800102 | Sensitive | lineage3.1.2.1 | None | SRR1049675 | HR-TB | lineage2.2.1 | None | SRR1062919 | HR-TB | lineage2.2.1 | None | SRR1049674 | HR-TB | lineage2.2.1 | None | SRR1175127 | Sensitive | lineage2.2.1.2 | None | SRR1140724 | HR-TB | lineage2.2.1 | None | SRR1172796 | Sensitive | lineage2.2.1.2 | None | SRR18003023 | Other | lineage2.2.1 | None | SRR14782405 | HR-TB | None | SRR14801652 | MDR-TB | lineage4.3.3 | None | SRR16156804 | RR-TB | lineage4.9 | None | SRR18002941 | RR-TB | lineage2.2.1 | None | SRR18002981 | Other | lineage2.2.1 | None | SRR18003004 | Pre-XDR-TB | lineage2.2.2 | None | SRR1735596 | RR-TB | lineage4.9 | None | SRR18002881 | Pre-XDR-TB | lineage2.2.1 | None | SRR18002903 | Pre-XDR-TB | lineage2.2.1 | None | SRR18002933 | Other | lineage2.2.1 | None | SRR18002945 | RR-TB | lineage2.2.1 | None | SRR18002947 | MDR-TB | lineage2.2.1 | None | SRR20969731 | Other | lineage2.2.1 | None | SRR18003015 | MDR-TB | lineage2.2.1 | None | SRR18003042 | Other | lineage2.2.1 | None | SRR18003047 | MDR-TB | lineage2.2.1 | None | SRR18213736 | MDR-TB | lineage3 | None | SRR20969542 | Other | lineage4.4.2 | None | SRR18003027 | Other | lineage2.2.1 | None | SRR18003030 | Pre-XDR-TB | lineage2.2.1 | None | SRR18213721 | Other | lineage4.8 | None | SRR19303820 | RR-TB | lineage4.8 | None | SRR20969708 | HR-TB | lineage2.2 | None | SRR21663281 | Sensitive | lineage4.8 | None | SRR20970016 | Other | lineage2.2 | None | SRR3675270 | HR-TB | None | SRR22424778 | RR-TB | lineage2.2.1.1 | None | SRR3675230 | RR-TB | lineage3 | None | ERR4814841 | Other | lineage4.1 | None | ERR2027290 | RR-TB | lineage3.1 | None | SAMEA3501073 | RR-TB | lineage4.8 | None | SRR3675527 | RR-TB | lineage4.9 | None | ERR2229198 | MDR-TB | lineage4.8 | None | ERR2229233 | Sensitive | lineage4 | None | ERR4816610 | RR-TB | lineage4.3.3 | None | ERR4816548 | MDR-TB | lineage4.5 | None | SRR5007167 | RR-TB | lineage4.1.1.3.1 | None | SRR5007165 | MDR-TB | lineage3 | None | ERR2515055 | Other | lineage3 | None | ERR4818851 | RR-TB | lineage4.4.1.1 | None | SRR5007161 | RR-TB | lineage4.1.1.3.1 | None | SRR5007168 | RR-TB | lineage4.9 | None | SRR6046117 | RR-TB | lineage4.9 | None | SRR5007169 | RR-TB | lineage4.8.2 | None | SRR5007193 | RR-TB | lineage4.1.1.3.1 | None | ERR4820318 | Other | lineage4.2.2 | None | ERR4819864 | RR-TB | lineage1.1.3.1 | None | ERR6359082 | Other | lineage4.9 | None | SRR5535933 | HR-TB | None | SRR5007170 | RR-TB | lineage4.9 | None | ERR4820107 | RR-TB | None | ERR4821119 | Other | lineage4.4.1.1 | None | SRR6045516 | Other | lineage3.1.1 | None | ERR2660539 | Other | lineage4.9 | None | ERR4822261 | RR-TB | lineage2.2.1 | None | ERR4821176 | Pre-XDR-TB | lineage2.2.1 | None | SRR6045957 | Other | lineage4.9 | None | SRR5818647 | RR-TB | lineage4.3.4.2.1 | None | SRR6044936 | Other | lineage4 | None | SRR6045053 | Other | None | SRR6045267 | RR-TB | lineage4 | None | SRR6045217 | Other | lineage4 | None | SRR6046359 | Other | lineage4.7 | None | SRR6046046 | Other | None | SRR6046616 | Other | lineage4.3.1.1 | None | ERR502517 | MDR-TB | lineage5.1.1 | None | SRR6046878 | HR-TB | lineage4 | None |
---|