TB-Profiler result

Run: SRR19303820
Summary

Run ID: SRR19303820

Sample name:

Date: 03-04-2023 21:08:08

Number of reads: 792653

Percentage reads mapped: 9.45

Strain: lineage4.8

Drug-resistance: RR-TB

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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
lineage4 Euro-American LAM;T;S;X;H None 1.0
lineage4.8 Euro-American (mainly T) T1;T2;T3;T5 RD219 1.0
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
rpoB 761127 p.Ser441Ala missense_variant 0.47 rifampicin
rpoB 761196 p.Leu464Met missense_variant 0.15 rifampicin
rrs 1472644 n.799C>T non_coding_transcript_exon_variant 0.38 streptomycin
rrs 1472733 n.888G>A non_coding_transcript_exon_variant 0.5 streptomycin
rrs 1473247 n.1402C>A non_coding_transcript_exon_variant 0.75 kanamycin, capreomycin, aminoglycosides, amikacin
rrs 1473329 n.1484G>T non_coding_transcript_exon_variant 0.68 kanamycin, capreomycin, aminoglycosides, amikacin
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
gyrA 7362 p.Glu21Gln missense_variant 1.0
fgd1 491310 c.528C>G synonymous_variant 0.4
mshA 576113 p.Arg256Gly missense_variant 0.44
mshA 576453 p.Val369Gly missense_variant 0.25
ccsA 619968 c.78G>A synonymous_variant 0.18
rpoB 761015 c.1209G>C synonymous_variant 0.16
rpoB 761021 c.1215G>C synonymous_variant 0.17
rpoB 761027 c.1221A>G synonymous_variant 0.17
rpoB 761031 p.Gln409Asn missense_variant 0.16
rpoB 761036 c.1230G>C synonymous_variant 0.15
rpoB 761037 c.1231_1233delTTGinsCTC synonymous_variant 0.19
rpoB 761054 c.1248G>C synonymous_variant 0.31
rpoB 761058 p.Val418Thr missense_variant 0.25
rpoB 761088 c.1282_1283delAGinsTC synonymous_variant 0.45
rpoB 761096 c.1290G>C synonymous_variant 0.5
rpoB 761102 c.1296A>G synonymous_variant 0.52
rpoB 761132 c.1326G>C synonymous_variant 0.45
rpoB 761133 c.1327T>C synonymous_variant 0.45
rpoB 761150 c.1344A>C synonymous_variant 0.38
rpoB 761154 p.Ser450Asn missense_variant 0.32
rpoB 761159 c.1353G>C synonymous_variant 0.32
rpoB 761165 c.1359G>T synonymous_variant 0.22
rpoB 761180 c.1374A>C synonymous_variant 0.25
rpoB 761189 c.1383T>C synonymous_variant 0.2
rpoB 761193 p.Gly463Ser missense_variant 0.15
rpoB 761213 c.1407G>C synonymous_variant 0.14
rpoB 761990 c.2184G>C synonymous_variant 0.14
rpoB 761999 c.2193G>C synonymous_variant 0.17
rpoB 762003 p.Asn733Gln missense_variant 0.17
rpoB 762009 p.Leu735Val missense_variant 0.16
rpoB 762016 p.Glu737Ala missense_variant 0.16
rpoB 762024 p.Val740Met missense_variant 0.16
rpoB 762053 c.2247T>C synonymous_variant 0.14
rpoB 762057 p.Ile751Val missense_variant 0.15
rpoB 762062 c.2256T>C synonymous_variant 0.15
rpoB 762065 c.2259T>C synonymous_variant 0.18
rpoB 762110 c.2304G>C synonymous_variant 0.15
rpoB 762114 p.Ile770Val missense_variant 0.12
rpoB 762143 c.2337T>C synonymous_variant 0.18
rpoB 762149 c.2343G>C synonymous_variant 0.17
rpoB 762156 p.Val784Ile missense_variant 0.19
rpoB 762167 c.2361T>C synonymous_variant 0.24
rpoB 762176 c.2370T>C synonymous_variant 0.21
rpoB 762185 c.2379G>C synonymous_variant 0.23
rpoB 762194 c.2388G>C synonymous_variant 0.26
rpoB 762197 c.2391C>G synonymous_variant 0.12
rpoB 762212 c.2406G>C synonymous_variant 0.13
rpoB 762245 c.2439G>C synonymous_variant 0.23
rpoB 762248 c.2442G>C synonymous_variant 0.14
rpoB 762254 c.2448T>C synonymous_variant 0.24
rpoB 762879 p.Met1025Leu missense_variant 0.14
rpoC 762887 c.-483G>C upstream_gene_variant 0.17
rpoC 762896 c.-474G>C upstream_gene_variant 0.13
rpoC 762926 c.-444C>G upstream_gene_variant 0.26
rpoC 762929 c.-441G>C upstream_gene_variant 0.15
rpoC 762938 c.-432G>C upstream_gene_variant 0.14
rpoC 762962 c.-408C>T upstream_gene_variant 0.15
rpoC 762971 c.-399G>C upstream_gene_variant 0.3
rpoC 762980 c.-390T>C upstream_gene_variant 0.14
rpoC 762989 c.-381G>C upstream_gene_variant 0.29
rpoC 762995 c.-375G>C upstream_gene_variant 0.18
rpoB 763005 p.Cys1067Val missense_variant 0.17
rpoB 763014 p.Met1070Leu missense_variant 0.18
rpoB 763017 p.Gln1071Glu missense_variant 0.19
rpoC 763028 c.-342T>C upstream_gene_variant 0.21
rpoC 763031 c.-339T>C upstream_gene_variant 0.14
rpoB 763038 p.Thr1078Ala missense_variant 0.21
rpoC 763043 c.-327G>C upstream_gene_variant 0.2
rpoC 763053 c.-317T>C upstream_gene_variant 0.36
rpoC 763067 c.-303C>G upstream_gene_variant 0.19
rpoC 763070 c.-300T>C upstream_gene_variant 0.23
rpoB 763077 p.Val1091Thr missense_variant 0.27
rpoC 763103 c.-267G>C upstream_gene_variant 0.16
rpoC 763456 c.87A>G synonymous_variant 0.15
rpoC 763468 c.99G>C synonymous_variant 0.23
rpoC 763483 c.114G>C synonymous_variant 0.17
rpoC 763486 c.117T>C synonymous_variant 0.27
rpoC 763492 c.123G>C synonymous_variant 0.27
rpoC 763507 c.138G>C synonymous_variant 0.31
rpoC 763528 c.159G>C synonymous_variant 0.36
rpoC 763531 c.162G>C synonymous_variant 0.38
rpoC 763534 c.165T>C synonymous_variant 0.31
rpoC 763537 c.168C>G synonymous_variant 0.25
rpoC 763546 c.177A>G synonymous_variant 0.24
rpoC 763550 p.Tyr61Ala missense_variant 0.31
rpoC 763570 c.201G>T synonymous_variant 0.27
rpoC 763578 p.Phe70Tyr missense_variant 0.38
rpoC 763585 c.216C>G synonymous_variant 0.2
rpoC 763589 p.Ile74Val missense_variant 0.24
rpoC 763606 c.237C>A synonymous_variant 0.23
rpoC 763615 c.246G>C synonymous_variant 0.31
rpoC 763618 c.249C>T synonymous_variant 0.27
rpoC 763622 p.Ala85Ser missense_variant 0.36
rpoC 763636 c.267T>C synonymous_variant 0.19
rpoC 763642 c.273G>C synonymous_variant 0.4
rpoC 763647 p.Gly93Ala missense_variant 0.29
rpoC 763654 c.285C>T synonymous_variant 0.16
rpoC 763655 p.Glu96Lys missense_variant 0.26
rpoC 763660 c.291T>C synonymous_variant 0.29
rpoC 763669 c.300C>G synonymous_variant 0.24
rpoC 763696 c.327T>C synonymous_variant 0.41
rpoC 763699 c.330G>T synonymous_variant 0.31
rpoC 763708 c.339G>C synonymous_variant 0.44
rpoC 763714 c.345G>C synonymous_variant 0.37
rpoC 763717 c.348T>C synonymous_variant 0.21
rpoC 763723 c.354G>C synonymous_variant 0.21
rpoC 763724 p.Asp119Asn missense_variant 0.18
rpoC 763729 c.360G>C synonymous_variant 0.19
rpoC 763732 c.363C>G synonymous_variant 0.33
rpoC 763735 c.366G>C synonymous_variant 0.18
rpoC 763751 p.Ile128Val missense_variant 0.3
rpoC 763772 p.Val135Met missense_variant 0.21
rpoC 764485 c.1116G>C synonymous_variant 0.19
rpoC 764491 c.1122G>T synonymous_variant 0.18
rpoC 764497 p.Glu376Asp missense_variant 0.18
rpoC 764498 p.Ser377Ala missense_variant 0.18
rpoC 764503 c.1134G>C synonymous_variant 0.26
rpoC 764509 c.1140G>C synonymous_variant 0.3
rpoC 764521 c.1152T>C synonymous_variant 0.3
rpoC 764536 c.1167G>C synonymous_variant 0.3
rpoC 764539 c.1170C>G synonymous_variant 0.35
rpoC 764548 c.1179G>C synonymous_variant 0.38
rpoC 764549 p.Pro394Val missense_variant 0.38
rpoC 764566 c.1197C>G synonymous_variant 0.44
rpoC 764572 c.1203G>C synonymous_variant 0.44
rpoC 764575 c.1206T>G synonymous_variant 0.39
rpoC 764581 c.1212T>C synonymous_variant 0.41
rpoC 764582 p.Leu405Met missense_variant 0.42
rpoC 764605 c.1236G>C synonymous_variant 0.43
rpoC 764611 c.1242G>C synonymous_variant 0.45
rpoC 764620 c.1251G>C synonymous_variant 0.36
rpoC 764623 c.1254C>G synonymous_variant 0.42
rpoC 764632 c.1263T>C synonymous_variant 0.5
rpoC 764635 c.1266C>G synonymous_variant 0.41
rpoC 764644 c.1275G>C synonymous_variant 0.45
rpoC 764650 c.1281G>T synonymous_variant 0.41
rpoC 764651 c.1282_1284delTCGinsAGC synonymous_variant 0.39
rpoC 764662 c.1293G>C synonymous_variant 0.45
rpoC 764668 c.1299C>T synonymous_variant 0.3
rpoC 764671 c.1302G>C synonymous_variant 0.35
rpoC 764683 c.1314G>C synonymous_variant 0.29
rpoC 764703 p.Lys445Ser missense_variant 0.19
rpoC 764706 p.Leu446Gln missense_variant 0.31
rpoC 764713 c.1344G>C synonymous_variant 0.23
rpoC 764731 c.1362G>C synonymous_variant 0.21
rpoC 764737 c.1368G>C synonymous_variant 0.12
rpoC 764749 c.1380G>C synonymous_variant 0.12
rpoC 764755 p.Asp462Glu missense_variant 0.12
rpoC 765937 c.2568T>C synonymous_variant 0.14
rpoC 765958 c.2589C>G synonymous_variant 0.14
rpoC 765962 c.2593T>C synonymous_variant 0.17
rpoC 765988 c.2619G>C synonymous_variant 0.16
rpoC 765991 c.2622C>G synonymous_variant 0.16
rpoC 766003 c.2634G>C synonymous_variant 0.18
rpoC 766009 c.2640G>C synonymous_variant 0.17
rpoC 766021 c.2652G>C synonymous_variant 0.16
mmpL5 775639 p.Ile948Val missense_variant 1.0
mmpL5 776654 c.1827A>G synonymous_variant 0.12
rpsL 781395 c.-165T>C upstream_gene_variant 1.0
rpsL 781751 c.192G>C synonymous_variant 0.12
rpsL 781766 c.207C>T synonymous_variant 0.19
rpsL 781772 c.213C>T synonymous_variant 0.18
rpsL 781796 p.Met79Ile missense_variant 0.19
rpsL 781802 c.243G>C synonymous_variant 0.18
rpsL 781805 c.246G>T synonymous_variant 0.18
rpsL 781811 c.252C>T synonymous_variant 0.18
rpsL 781817 c.258G>T synonymous_variant 0.22
rpsL 781829 c.270G>C synonymous_variant 0.22
rpsL 781832 c.273T>C synonymous_variant 0.22
fbiC 1303747 p.Thr273Ala missense_variant 1.0
Rv1258c 1406577 p.Gln255Arg missense_variant 0.12
rrs 1471659 n.-187C>T upstream_gene_variant 1.0
rrs 1471896 n.51T>C non_coding_transcript_exon_variant 0.2
rrs 1471900 n.55C>T non_coding_transcript_exon_variant 0.2
rrs 1472068 n.223T>G non_coding_transcript_exon_variant 1.0
rrs 1472075 n.230A>G non_coding_transcript_exon_variant 1.0
rrs 1472078 n.233C>T non_coding_transcript_exon_variant 1.0
rrs 1472094 n.249T>A non_coding_transcript_exon_variant 0.16
rrs 1472102 n.257G>A non_coding_transcript_exon_variant 0.49
rrs 1472106 n.261G>A non_coding_transcript_exon_variant 0.69
rrs 1472108 n.263C>T non_coding_transcript_exon_variant 0.51
rrs 1472112 n.267C>T non_coding_transcript_exon_variant 0.54
rrs 1472113 n.268T>C non_coding_transcript_exon_variant 0.38
rrs 1472123 n.278A>T non_coding_transcript_exon_variant 0.18
rrs 1472124 n.279C>T non_coding_transcript_exon_variant 0.25
rrs 1472127 n.282C>T non_coding_transcript_exon_variant 0.19
rrs 1472129 n.284G>C non_coding_transcript_exon_variant 0.18
rrs 1472130 n.285G>A non_coding_transcript_exon_variant 0.17
rrs 1472137 n.292G>A non_coding_transcript_exon_variant 0.19
rrs 1472150 n.305T>A non_coding_transcript_exon_variant 0.99
rrs 1472151 n.306C>T non_coding_transcript_exon_variant 0.22
rrs 1472155 n.310C>T non_coding_transcript_exon_variant 0.26
rrs 1472160 n.315C>T non_coding_transcript_exon_variant 0.17
rrs 1472172 n.327T>C non_coding_transcript_exon_variant 0.84
rrs 1472203 n.358G>A non_coding_transcript_exon_variant 0.19
rrs 1472210 n.365A>C non_coding_transcript_exon_variant 0.18
rrs 1472213 n.368G>C non_coding_transcript_exon_variant 0.18
rrs 1472215 n.370A>G non_coding_transcript_exon_variant 0.18
rrs 1472225 n.380C>A non_coding_transcript_exon_variant 0.26
rrs 1472234 n.389T>C non_coding_transcript_exon_variant 0.14
rrs 1472236 n.391C>G non_coding_transcript_exon_variant 0.13
rrs 1472251 n.406G>A non_coding_transcript_exon_variant 1.0
rrs 1472258 n.413A>G non_coding_transcript_exon_variant 0.15
rrs 1472259 n.414C>A non_coding_transcript_exon_variant 0.14
rrs 1472282 n.437T>G non_coding_transcript_exon_variant 0.85
rrs 1472284 n.439C>T non_coding_transcript_exon_variant 0.85
rrs 1472286 n.441C>G non_coding_transcript_exon_variant 0.96
rrs 1472293 n.448C>A non_coding_transcript_exon_variant 1.0
rrs 1472297 n.453_465delGTCCGGGTTCTCT non_coding_transcript_exon_variant 1.0
rrs 1472315 n.470T>G non_coding_transcript_exon_variant 0.92
rrs 1472328 n.483G>C non_coding_transcript_exon_variant 0.88
rrs 1472332 n.487A>G non_coding_transcript_exon_variant 0.92
rrs 1472333 n.488G>A non_coding_transcript_exon_variant 0.92
rrs 1472338 n.493A>G non_coding_transcript_exon_variant 0.97
rrs 1472344 n.499C>T non_coding_transcript_exon_variant 1.0
rrs 1472378 n.533G>T non_coding_transcript_exon_variant 0.15
rrs 1472379 n.534T>C non_coding_transcript_exon_variant 0.9
rrs 1472400 n.555C>T non_coding_transcript_exon_variant 0.84
rrs 1472412 n.567A>G non_coding_transcript_exon_variant 0.18
rrs 1472416 n.571C>T non_coding_transcript_exon_variant 0.45
rrs 1472422 n.577T>C non_coding_transcript_exon_variant 0.5
rrs 1472427 n.582T>G non_coding_transcript_exon_variant 0.4
rrs 1472435 n.590T>C non_coding_transcript_exon_variant 0.67
rrs 1472438 n.593T>C non_coding_transcript_exon_variant 0.5
rrs 1472448 n.603T>C non_coding_transcript_exon_variant 0.4
rrs 1472464 n.619A>G non_coding_transcript_exon_variant 0.4
rrs 1472476 n.631A>G non_coding_transcript_exon_variant 0.6
rrs 1472494 n.649A>G non_coding_transcript_exon_variant 0.91
rrs 1472496 n.651T>A non_coding_transcript_exon_variant 0.89
rrs 1472498 n.653C>T non_coding_transcript_exon_variant 0.93
rrs 1472507 n.662C>G non_coding_transcript_exon_variant 0.27
rrs 1472513 n.668T>C non_coding_transcript_exon_variant 0.13
rrs 1472517 n.672T>A non_coding_transcript_exon_variant 0.25
rrs 1472518 n.673G>T non_coding_transcript_exon_variant 0.28
rrs 1472530 n.685G>A non_coding_transcript_exon_variant 0.4
rrs 1472537 n.692C>T non_coding_transcript_exon_variant 0.4
rrs 1472544 n.699C>A non_coding_transcript_exon_variant 0.32
rrs 1472545 n.700A>T non_coding_transcript_exon_variant 0.28
rrs 1472549 n.704G>A non_coding_transcript_exon_variant 0.23
rrs 1472557 n.712G>A non_coding_transcript_exon_variant 0.17
rrs 1472558 n.713G>A non_coding_transcript_exon_variant 0.45
rrs 1472566 n.721G>A non_coding_transcript_exon_variant 0.28
rrs 1472569 n.724G>A non_coding_transcript_exon_variant 0.46
rrs 1472571 n.726G>C non_coding_transcript_exon_variant 0.44
rrs 1472579 n.734G>C non_coding_transcript_exon_variant 0.36
rrs 1472580 n.735C>T non_coding_transcript_exon_variant 0.21
rrs 1472581 n.736A>T non_coding_transcript_exon_variant 0.98
rrs 1472597 n.752G>A non_coding_transcript_exon_variant 0.45
rrs 1472598 n.753A>C non_coding_transcript_exon_variant 0.42
rrs 1472599 n.754G>T non_coding_transcript_exon_variant 0.31
rrs 1472607 n.762G>A non_coding_transcript_exon_variant 0.44
rrs 1472616 n.771G>A non_coding_transcript_exon_variant 0.44
rrs 1472655 n.810G>A non_coding_transcript_exon_variant 0.94
rrs 1472655 n.810G>T non_coding_transcript_exon_variant 0.96
rrs 1472658 n.813G>A non_coding_transcript_exon_variant 0.42
rrs 1472660 n.815T>C non_coding_transcript_exon_variant 0.55
rrs 1472661 n.816A>G non_coding_transcript_exon_variant 0.41
rrs 1472690 n.845C>A non_coding_transcript_exon_variant 0.49
rrs 1472692 n.847T>C non_coding_transcript_exon_variant 0.51
rrs 1472695 n.850C>T non_coding_transcript_exon_variant 0.17
rrs 1472697 n.852T>C non_coding_transcript_exon_variant 0.35
rrs 1472713 n.868T>C non_coding_transcript_exon_variant 0.47
rrs 1472714 n.869A>G non_coding_transcript_exon_variant 0.5
rrs 1472716 n.871C>T non_coding_transcript_exon_variant 0.49
rrs 1472742 n.897C>T non_coding_transcript_exon_variant 0.52
rrs 1472744 n.899A>G non_coding_transcript_exon_variant 0.53
rrs 1472755 n.910G>A non_coding_transcript_exon_variant 0.3
rrs 1472767 n.922G>A non_coding_transcript_exon_variant 0.26
rrs 1472781 n.936C>T non_coding_transcript_exon_variant 0.42
rrs 1472790 n.945T>C non_coding_transcript_exon_variant 0.56
rrs 1472793 n.948A>T non_coding_transcript_exon_variant 0.44
rrs 1472803 n.958T>A non_coding_transcript_exon_variant 0.48
rrs 1472824 n.979T>A non_coding_transcript_exon_variant 1.0
rrs 1472825 n.980G>A non_coding_transcript_exon_variant 0.73
rrs 1472828 n.983T>C non_coding_transcript_exon_variant 1.0
rrs 1472836 n.991G>A non_coding_transcript_exon_variant 0.79
rrs 1472837 n.992C>T non_coding_transcript_exon_variant 0.73
rrs 1472840 n.995A>T non_coding_transcript_exon_variant 1.0
rrs 1472844 n.999_1000insT non_coding_transcript_exon_variant 1.0
rrs 1472849 n.1005delT non_coding_transcript_exon_variant 0.92
rrs 1472856 n.1012delA non_coding_transcript_exon_variant 0.92
rrs 1472861 n.1018dupT non_coding_transcript_exon_variant 0.92
rrs 1472874 n.1029C>T non_coding_transcript_exon_variant 0.92
rrs 1472875 n.1030T>G non_coding_transcript_exon_variant 0.92
rrs 1472878 n.1033G>A non_coding_transcript_exon_variant 0.79
rrs 1472880 n.1035G>A non_coding_transcript_exon_variant 0.85
rrs 1472895 n.1050C>T non_coding_transcript_exon_variant 0.99
rrs 1472952 n.1107T>C non_coding_transcript_exon_variant 0.66
rrs 1472955 n.1110C>T non_coding_transcript_exon_variant 0.67
rrs 1472956 n.1111T>C non_coding_transcript_exon_variant 0.91
rrs 1472957 n.1112C>T non_coding_transcript_exon_variant 0.72
rrs 1472958 n.1113A>G non_coding_transcript_exon_variant 0.2
rrs 1472973 n.1128A>G non_coding_transcript_exon_variant 0.77
rrs 1472973 n.1128A>T non_coding_transcript_exon_variant 0.86
rrs 1472974 n.1129A>G non_coding_transcript_exon_variant 0.17
rrs 1472987 n.1142G>A non_coding_transcript_exon_variant 0.66
rrs 1472988 n.1143T>C non_coding_transcript_exon_variant 0.2
rrs 1472989 n.1144G>A non_coding_transcript_exon_variant 0.61
rrs 1472990 n.1145A>G non_coding_transcript_exon_variant 0.92
rrs 1473035 n.1190G>A non_coding_transcript_exon_variant 0.99
rrs 1473055 n.1210C>T non_coding_transcript_exon_variant 0.96
rrs 1473056 n.1211A>T non_coding_transcript_exon_variant 0.98
rrs 1473066 n.1221A>G non_coding_transcript_exon_variant 0.96
rrs 1473088 n.1243A>G non_coding_transcript_exon_variant 0.98
rrs 1473093 n.1248C>T non_coding_transcript_exon_variant 0.77
rrs 1473100 n.1255G>A non_coding_transcript_exon_variant 0.99
rrs 1473102 n.1257C>T non_coding_transcript_exon_variant 0.66
rrs 1473104 n.1259C>T non_coding_transcript_exon_variant 0.99
rrs 1473110 n.1265T>G non_coding_transcript_exon_variant 0.99
rrs 1473111 n.1266A>G non_coding_transcript_exon_variant 0.99
rrs 1473115 n.1270G>T non_coding_transcript_exon_variant 0.66
rrs 1473121 n.1276T>C non_coding_transcript_exon_variant 0.96
rrs 1473123 n.1278A>T non_coding_transcript_exon_variant 0.28
rrs 1473145 n.1300C>T non_coding_transcript_exon_variant 0.86
rrs 1473166 n.1321G>A non_coding_transcript_exon_variant 0.85
rrs 1473172 n.1327T>G non_coding_transcript_exon_variant 0.13
rrs 1473173 n.1328C>T non_coding_transcript_exon_variant 0.23
rrs 1473221 n.1376C>T non_coding_transcript_exon_variant 0.18
rrs 1473252 n.1407T>C non_coding_transcript_exon_variant 0.88
rrs 1473259 n.1414C>T non_coding_transcript_exon_variant 0.91
rrs 1473270 n.1425G>A non_coding_transcript_exon_variant 0.41
rrs 1473276 n.1431A>C non_coding_transcript_exon_variant 0.92
rrs 1473276 n.1431A>G non_coding_transcript_exon_variant 0.98
rrs 1473277 n.1432G>A non_coding_transcript_exon_variant 0.15
rrs 1473301 n.1456T>C non_coding_transcript_exon_variant 0.95
rrs 1473301 n.1456T>G non_coding_transcript_exon_variant 0.85
rrs 1473305 n.1460G>T non_coding_transcript_exon_variant 0.36
rrs 1473315 n.1470T>C non_coding_transcript_exon_variant 0.42
rrs 1473316 n.1471C>T non_coding_transcript_exon_variant 0.96
rrl 1473517 n.-141A>G upstream_gene_variant 0.29
rrl 1473676 n.19G>A non_coding_transcript_exon_variant 0.33
rrl 1473679 n.22T>C non_coding_transcript_exon_variant 0.4
rrl 1473697 n.40C>T non_coding_transcript_exon_variant 0.4
rrl 1473698 n.41G>A non_coding_transcript_exon_variant 0.5
rrl 1473718 n.61G>T non_coding_transcript_exon_variant 0.44
rrl 1473721 n.64G>A non_coding_transcript_exon_variant 0.5
rrl 1473722 n.65G>T non_coding_transcript_exon_variant 0.5
rrl 1473731 n.74T>A non_coding_transcript_exon_variant 0.62
rrl 1473744 n.87T>C non_coding_transcript_exon_variant 0.57
rrl 1473746 n.89T>A non_coding_transcript_exon_variant 0.57
rrl 1473747 n.90C>T non_coding_transcript_exon_variant 0.57
rrl 1473751 n.94C>T non_coding_transcript_exon_variant 0.57
rrl 1473753 n.96A>G non_coding_transcript_exon_variant 0.57
rrl 1474111 n.454T>G non_coding_transcript_exon_variant 0.67
rrl 1474124 n.467G>C non_coding_transcript_exon_variant 0.88
rrl 1474125 n.468C>G non_coding_transcript_exon_variant 0.88
rrl 1474130 n.473C>T non_coding_transcript_exon_variant 0.91
rrl 1474140 n.483C>T non_coding_transcript_exon_variant 0.93
rrl 1474141 n.484G>C non_coding_transcript_exon_variant 0.93
rrl 1474142 n.485C>G non_coding_transcript_exon_variant 0.93
rrl 1474151 n.494C>T non_coding_transcript_exon_variant 0.95
rrl 1474155 n.498G>A non_coding_transcript_exon_variant 0.95
rrl 1474164 n.507C>T non_coding_transcript_exon_variant 0.96
rrl 1474171 n.514C>T non_coding_transcript_exon_variant 0.88
rrl 1474181 n.524C>T non_coding_transcript_exon_variant 0.89
rrl 1474183 n.526T>C non_coding_transcript_exon_variant 0.44
rrl 1474184 n.527C>T non_coding_transcript_exon_variant 0.93
rrl 1474185 n.528G>A non_coding_transcript_exon_variant 0.36
rrl 1474197 n.540C>T non_coding_transcript_exon_variant 0.94
rrl 1474199 n.542G>A non_coding_transcript_exon_variant 0.35
rrl 1474202 n.545T>C non_coding_transcript_exon_variant 0.91
rrl 1474218 n.561T>A non_coding_transcript_exon_variant 0.15
rrl 1474249 n.592G>T non_coding_transcript_exon_variant 0.84
rrl 1474269 n.612C>T non_coding_transcript_exon_variant 0.74
rrl 1474271 n.614A>G non_coding_transcript_exon_variant 0.16
rrl 1474272 n.615C>T non_coding_transcript_exon_variant 0.16
rrl 1474275 n.618T>G non_coding_transcript_exon_variant 0.88
rrl 1474280 n.623C>T non_coding_transcript_exon_variant 0.62
rrl 1474281 n.624A>G non_coding_transcript_exon_variant 0.29
rrl 1474282 n.625G>T non_coding_transcript_exon_variant 0.32
rrl 1474310 n.653T>G non_coding_transcript_exon_variant 0.76
rrl 1474315 n.658A>G non_coding_transcript_exon_variant 0.47
rrl 1474317 n.660G>A non_coding_transcript_exon_variant 0.29
rrl 1474348 n.691C>T non_coding_transcript_exon_variant 0.66
rrl 1474351 n.694G>T non_coding_transcript_exon_variant 0.95
rrl 1474353 n.696A>G non_coding_transcript_exon_variant 0.78
rrl 1474353 n.696A>T non_coding_transcript_exon_variant 0.88
rrl 1474354 n.697C>T non_coding_transcript_exon_variant 0.64
rrl 1474355 n.698A>G non_coding_transcript_exon_variant 0.36
rrl 1474362 n.705A>G non_coding_transcript_exon_variant 0.92
rrl 1474383 n.726G>T non_coding_transcript_exon_variant 0.37
rrl 1474384 n.727C>T non_coding_transcript_exon_variant 0.26
rrl 1474387 n.730C>T non_coding_transcript_exon_variant 0.95
rrl 1474393 n.736A>G non_coding_transcript_exon_variant 0.45
rrl 1474402 n.745T>C non_coding_transcript_exon_variant 0.61
rrl 1474413 n.757_776delCCCACACGCGCATACGCGCG non_coding_transcript_exon_variant 0.86
rrl 1474437 n.781_782delAA non_coding_transcript_exon_variant 0.82
rrl 1474444 n.787G>C non_coding_transcript_exon_variant 0.12
rrl 1474448 n.791T>C non_coding_transcript_exon_variant 0.74
rrl 1474454 n.797G>A non_coding_transcript_exon_variant 0.14
rrl 1474467 n.810A>G non_coding_transcript_exon_variant 0.55
rrl 1474476 n.819C>T non_coding_transcript_exon_variant 0.54
rrl 1474488 n.831G>T non_coding_transcript_exon_variant 0.97
rrl 1474495 n.838G>A non_coding_transcript_exon_variant 0.58
rrl 1474496 n.839C>A non_coding_transcript_exon_variant 0.45
rrl 1474497 n.840G>C non_coding_transcript_exon_variant 0.41
rrl 1474498 n.841G>T non_coding_transcript_exon_variant 0.49
rrl 1474505 n.848C>G non_coding_transcript_exon_variant 0.48
rrl 1474506 n.849C>G non_coding_transcript_exon_variant 0.45
rrl 1474507 n.850G>T non_coding_transcript_exon_variant 0.44
rrl 1474508 n.851C>T non_coding_transcript_exon_variant 0.55
rrl 1474516 n.859C>A non_coding_transcript_exon_variant 0.98
rrl 1474527 n.870T>C non_coding_transcript_exon_variant 0.55
rrl 1474529 n.872A>C non_coding_transcript_exon_variant 0.47
rrl 1474530 n.873G>A non_coding_transcript_exon_variant 0.42
rrl 1474537 n.880G>A non_coding_transcript_exon_variant 0.99
rrl 1474539 n.882C>T non_coding_transcript_exon_variant 0.43
rrl 1474540 n.883T>G non_coding_transcript_exon_variant 0.46
rrl 1474542 n.885A>G non_coding_transcript_exon_variant 0.57
rrl 1474558 n.901G>A non_coding_transcript_exon_variant 0.71
rrl 1474584 n.927C>T non_coding_transcript_exon_variant 0.69
rrl 1474626 n.969T>C non_coding_transcript_exon_variant 0.31
rrl 1474627 n.970G>A non_coding_transcript_exon_variant 0.49
rrl 1474632 n.975G>T non_coding_transcript_exon_variant 0.68
rrl 1474634 n.977T>G non_coding_transcript_exon_variant 0.24
rrl 1474658 n.1001A>G non_coding_transcript_exon_variant 0.2
rrl 1474663 n.1006C>T non_coding_transcript_exon_variant 0.19
rrl 1474672 n.1015C>T non_coding_transcript_exon_variant 0.26
rrl 1474677 n.1020A>G non_coding_transcript_exon_variant 0.99
rrl 1474692 n.1035G>A non_coding_transcript_exon_variant 0.18
rrl 1474694 n.1037C>T non_coding_transcript_exon_variant 0.44
rrl 1474722 n.1065T>C non_coding_transcript_exon_variant 0.35
rrl 1474723 n.1066G>A non_coding_transcript_exon_variant 0.29
rrl 1474734 n.1077G>A non_coding_transcript_exon_variant 0.97
rrl 1474734 n.1077G>T non_coding_transcript_exon_variant 0.97
rrl 1474736 n.1079C>T non_coding_transcript_exon_variant 0.33
rrl 1474749 n.1092C>T non_coding_transcript_exon_variant 0.71
rrl 1474751 n.1094G>A non_coding_transcript_exon_variant 0.31
rrl 1474753 n.1097delC non_coding_transcript_exon_variant 0.98
rrl 1474760 n.1103A>G non_coding_transcript_exon_variant 0.84
rrl 1474777 n.1120T>C non_coding_transcript_exon_variant 0.52
rrl 1474779 n.1122G>A non_coding_transcript_exon_variant 0.67
rrl 1474780 n.1123C>T non_coding_transcript_exon_variant 0.36
rrl 1474782 n.1125G>A non_coding_transcript_exon_variant 0.78
rrl 1474783 n.1126G>A non_coding_transcript_exon_variant 0.38
rrl 1474794 n.1137C>T non_coding_transcript_exon_variant 0.98
rrl 1474801 n.1144G>A non_coding_transcript_exon_variant 0.24
rrl 1474802 n.1145T>C non_coding_transcript_exon_variant 0.2
rrl 1474823 n.1166C>G non_coding_transcript_exon_variant 0.82
rrl 1474824 n.1167A>G non_coding_transcript_exon_variant 0.19
rrl 1474827 n.1170C>T non_coding_transcript_exon_variant 0.63
rrl 1474830 n.1173A>G non_coding_transcript_exon_variant 0.71
rrl 1474830 n.1173A>T non_coding_transcript_exon_variant 0.8
rrl 1474831 n.1174A>G non_coding_transcript_exon_variant 0.96
rrl 1474831 n.1174A>T non_coding_transcript_exon_variant 0.95
rrl 1474832 n.1175A>T non_coding_transcript_exon_variant 0.19
rrl 1474864 n.1207C>T non_coding_transcript_exon_variant 0.86
rrl 1474883 n.1226T>C non_coding_transcript_exon_variant 0.34
rrl 1474901 n.1244A>G non_coding_transcript_exon_variant 0.13
rrl 1474903 n.1246T>C non_coding_transcript_exon_variant 0.15
rrl 1474904 n.1247G>C non_coding_transcript_exon_variant 0.85
rrl 1474913 n.1256T>C non_coding_transcript_exon_variant 0.38
rrl 1474932 n.1275C>T non_coding_transcript_exon_variant 0.63
rrl 1474946 n.1289C>T non_coding_transcript_exon_variant 0.22
rrl 1475031 n.1374G>C non_coding_transcript_exon_variant 0.75
rrl 1475059 n.1403_1404insTA non_coding_transcript_exon_variant 0.86
rrl 1475062 n.1405A>T non_coding_transcript_exon_variant 0.86
rrl 1475065 n.1409_1411delCAA non_coding_transcript_exon_variant 0.86
rrl 1475080 n.1425_1426delCC non_coding_transcript_exon_variant 0.86
rrl 1475090 n.1433A>T non_coding_transcript_exon_variant 0.88
rrl 1475104 n.1447T>A non_coding_transcript_exon_variant 0.88
rrl 1475114 n.1457C>T non_coding_transcript_exon_variant 0.88
rrl 1475124 n.1467A>T non_coding_transcript_exon_variant 0.91
rrl 1475129 n.1472G>T non_coding_transcript_exon_variant 0.33
rrl 1475137 n.1480A>G non_coding_transcript_exon_variant 0.25
rrl 1475171 n.1514C>T non_coding_transcript_exon_variant 0.67
rrl 1475172 n.1515A>G non_coding_transcript_exon_variant 0.43
rrl 1475499 n.1842C>T non_coding_transcript_exon_variant 0.75
rrl 1475515 n.1858G>A non_coding_transcript_exon_variant 0.71
rrl 1475526 n.1869C>A non_coding_transcript_exon_variant 0.83
rrl 1475531 n.1874C>T non_coding_transcript_exon_variant 0.71
rrl 1475538 n.1881T>A non_coding_transcript_exon_variant 0.71
rrl 1475539 n.1882A>T non_coding_transcript_exon_variant 0.86
rrl 1475545 n.1888T>G non_coding_transcript_exon_variant 0.86
rrl 1475548 n.1891C>T non_coding_transcript_exon_variant 0.75
rrl 1475549 n.1892T>C non_coding_transcript_exon_variant 0.75
rrl 1475649 n.1992A>G non_coding_transcript_exon_variant 0.5
rrl 1475655 n.1998T>G non_coding_transcript_exon_variant 0.5
rrl 1475657 n.2000A>G non_coding_transcript_exon_variant 0.38
rrl 1475659 n.2002G>A non_coding_transcript_exon_variant 0.67
rrl 1475672 n.2015C>T non_coding_transcript_exon_variant 0.47
rrl 1475673 n.2016T>C non_coding_transcript_exon_variant 0.57
rrl 1475686 n.2029C>G non_coding_transcript_exon_variant 0.16
rrl 1475696 n.2039T>C non_coding_transcript_exon_variant 0.31
rrl 1475699 n.2042C>T non_coding_transcript_exon_variant 0.93
rrl 1475703 n.2046A>G non_coding_transcript_exon_variant 0.31
rrl 1475707 n.2050T>G non_coding_transcript_exon_variant 0.21
rrl 1475715 n.2058G>C non_coding_transcript_exon_variant 0.19
rrl 1475722 n.2065G>T non_coding_transcript_exon_variant 0.66
rrl 1475751 n.2094C>A non_coding_transcript_exon_variant 1.0
rrl 1475751 n.2094C>T non_coding_transcript_exon_variant 1.0
rrl 1475752 n.2095C>T non_coding_transcript_exon_variant 0.63
rrl 1475753 n.2096C>G non_coding_transcript_exon_variant 0.65
rrl 1475754 n.2097G>A non_coding_transcript_exon_variant 0.15
rrl 1475756 n.2099T>C non_coding_transcript_exon_variant 0.31
rrl 1475765 n.2108A>G non_coding_transcript_exon_variant 0.94
rrl 1475765 n.2108A>T non_coding_transcript_exon_variant 0.98
rrl 1475769 n.2112T>C non_coding_transcript_exon_variant 0.77
rrl 1475774 n.2117C>T non_coding_transcript_exon_variant 0.16
rrl 1475775 n.2118G>T non_coding_transcript_exon_variant 0.63
rrl 1475777 n.2120A>T non_coding_transcript_exon_variant 0.38
rrl 1475869 n.2212C>A non_coding_transcript_exon_variant 0.65
rrl 1475881 n.2224T>C non_coding_transcript_exon_variant 0.81
rrl 1475883 n.2226A>C non_coding_transcript_exon_variant 0.98
rrl 1475883 n.2226A>T non_coding_transcript_exon_variant 0.99
rrl 1475884 n.2227A>G non_coding_transcript_exon_variant 0.28
rrl 1475896 n.2239A>G non_coding_transcript_exon_variant 0.15
rrl 1475898 n.2241A>G non_coding_transcript_exon_variant 0.99
rrl 1475899 n.2242G>A non_coding_transcript_exon_variant 0.99
rrl 1475906 n.2249C>T non_coding_transcript_exon_variant 0.37
rrl 1475916 n.2259C>G non_coding_transcript_exon_variant 1.0
rrl 1475937 n.2280A>T non_coding_transcript_exon_variant 1.0
rrl 1475943 n.2286G>A non_coding_transcript_exon_variant 1.0
rrl 1475945 n.2288C>A non_coding_transcript_exon_variant 0.23
rrl 1475952 n.2295A>G non_coding_transcript_exon_variant 0.99
rrl 1475963 n.2306G>T non_coding_transcript_exon_variant 0.78
rrl 1475970 n.2313C>T non_coding_transcript_exon_variant 1.0
rrl 1475975 n.2318C>T non_coding_transcript_exon_variant 0.95
rrl 1475977 n.2320A>G non_coding_transcript_exon_variant 1.0
rrl 1475978 n.2321C>T non_coding_transcript_exon_variant 0.81
rrl 1475988 n.2331A>G non_coding_transcript_exon_variant 1.0
rrl 1475993 n.2336C>T non_coding_transcript_exon_variant 0.89
rrl 1475996 n.2339T>G non_coding_transcript_exon_variant 0.27
rrl 1475997 n.2340A>T non_coding_transcript_exon_variant 0.99
rrl 1475998 n.2341C>T non_coding_transcript_exon_variant 0.99
rrl 1476001 n.2344T>C non_coding_transcript_exon_variant 0.99
rrl 1476030 n.2373A>G non_coding_transcript_exon_variant 0.98
rrl 1476032 n.2375C>A non_coding_transcript_exon_variant 0.55
rrl 1476033 n.2376T>G non_coding_transcript_exon_variant 0.4
rrl 1476034 n.2377C>G non_coding_transcript_exon_variant 0.59
rrl 1476035 n.2378G>T non_coding_transcript_exon_variant 0.33
rrl 1476040 n.2383C>T non_coding_transcript_exon_variant 0.81
rrl 1476044 n.2387T>G non_coding_transcript_exon_variant 0.34
rrl 1476045 n.2388G>T non_coding_transcript_exon_variant 0.55
rrl 1476046 n.2389G>T non_coding_transcript_exon_variant 0.36
rrl 1476047 n.2390G>T non_coding_transcript_exon_variant 0.55
rrl 1476049 n.2392C>T non_coding_transcript_exon_variant 0.95
rrl 1476113 n.2456T>G non_coding_transcript_exon_variant 0.55
rrl 1476115 n.2458T>C non_coding_transcript_exon_variant 0.54
rrl 1476116 n.2459A>G non_coding_transcript_exon_variant 0.14
rrl 1476130 n.2473G>A non_coding_transcript_exon_variant 0.62
rrl 1476131 n.2474C>T non_coding_transcript_exon_variant 0.97
rrl 1476141 n.2484A>G non_coding_transcript_exon_variant 0.13
rrl 1476153 n.2496T>C non_coding_transcript_exon_variant 0.17
rrl 1476164 n.2507A>G non_coding_transcript_exon_variant 0.77
rrl 1476179 n.2522C>T non_coding_transcript_exon_variant 0.21
rrl 1476194 n.2537A>G non_coding_transcript_exon_variant 1.0
rrl 1476200 n.2543A>T non_coding_transcript_exon_variant 1.0
rrl 1476201 n.2544C>T non_coding_transcript_exon_variant 0.92
rrl 1476214 n.2557G>T non_coding_transcript_exon_variant 0.91
rrl 1476215 n.2558C>T non_coding_transcript_exon_variant 0.92
rrl 1476224 n.2567A>G non_coding_transcript_exon_variant 0.78
rrl 1476225 n.2568T>G non_coding_transcript_exon_variant 0.22
rrl 1476227 n.2570C>T non_coding_transcript_exon_variant 0.16
rrl 1476245 n.2588C>T non_coding_transcript_exon_variant 0.61
rrl 1476250 n.2593C>G non_coding_transcript_exon_variant 0.5
rrl 1476251 n.2594T>C non_coding_transcript_exon_variant 0.44
rrl 1476252 n.2595T>G non_coding_transcript_exon_variant 0.63
rrl 1476253 n.2596A>G non_coding_transcript_exon_variant 0.55
rrl 1476255 n.2598A>G non_coding_transcript_exon_variant 0.22
rrl 1476256 n.2599A>G non_coding_transcript_exon_variant 0.37
rrl 1476257 n.2600G>C non_coding_transcript_exon_variant 0.51
rrl 1476260 n.2603A>G non_coding_transcript_exon_variant 1.0
rrl 1476280 n.2623A>C non_coding_transcript_exon_variant 0.42
rrl 1476281 n.2624T>C non_coding_transcript_exon_variant 0.57
rrl 1476293 n.2636C>T non_coding_transcript_exon_variant 0.42
rrl 1476294 n.2637A>G non_coding_transcript_exon_variant 0.71
rrl 1476295 n.2638C>G non_coding_transcript_exon_variant 1.0
rrl 1476296 n.2639C>T non_coding_transcript_exon_variant 1.0
rrl 1476297 n.2640C>G non_coding_transcript_exon_variant 0.95
rrl 1476297 n.2640C>T non_coding_transcript_exon_variant 0.97
rrl 1476298 n.2641C>G non_coding_transcript_exon_variant 0.27
rrl 1476299 n.2642C>G non_coding_transcript_exon_variant 0.27
rrl 1476300 n.2643G>T non_coding_transcript_exon_variant 0.54
rrl 1476301 n.2644A>T non_coding_transcript_exon_variant 0.99
rrl 1476302 n.2645G>A non_coding_transcript_exon_variant 0.43
rrl 1476308 n.2651G>C non_coding_transcript_exon_variant 0.28
rrl 1476309 n.2652G>C non_coding_transcript_exon_variant 0.27
rrl 1476311 n.2654G>C non_coding_transcript_exon_variant 1.0
rrl 1476312 n.2655T>C non_coding_transcript_exon_variant 0.71
rrl 1476313 n.2656G>A non_coding_transcript_exon_variant 0.41
rrl 1476332 n.2675G>C non_coding_transcript_exon_variant 0.5
rrl 1476337 n.2680C>T non_coding_transcript_exon_variant 0.43
rrl 1476338 n.2681C>T non_coding_transcript_exon_variant 0.52
rrl 1476353 n.2696G>T non_coding_transcript_exon_variant 0.58
rrl 1476358 n.2701T>C non_coding_transcript_exon_variant 0.61
rrl 1476359 n.2702C>G non_coding_transcript_exon_variant 0.38
rrl 1476369 n.2712C>T non_coding_transcript_exon_variant 0.37
rrl 1476372 n.2715T>C non_coding_transcript_exon_variant 0.59
rrl 1476381 n.2724G>C non_coding_transcript_exon_variant 0.4
rrl 1476382 n.2725A>G non_coding_transcript_exon_variant 0.58
rrl 1476383 n.2726T>A non_coding_transcript_exon_variant 0.58
rrl 1476408 n.2751G>A non_coding_transcript_exon_variant 0.28
rrl 1476425 n.2768G>T non_coding_transcript_exon_variant 0.54
rrl 1476428 n.2771C>T non_coding_transcript_exon_variant 0.95
rrl 1476429 n.2772A>C non_coding_transcript_exon_variant 0.93
rrl 1476466 n.2809C>T non_coding_transcript_exon_variant 0.72
rrl 1476481 n.2824T>C non_coding_transcript_exon_variant 0.94
rrl 1476506 n.2849T>C non_coding_transcript_exon_variant 0.98
rrl 1476513 n.2856G>T non_coding_transcript_exon_variant 0.18
rrl 1476514 n.2857C>T non_coding_transcript_exon_variant 0.31
rrl 1476515 n.2858C>T non_coding_transcript_exon_variant 0.67
rrl 1476517 n.2860C>T non_coding_transcript_exon_variant 0.15
rrl 1476519 n.2862C>G non_coding_transcript_exon_variant 0.28
rrl 1476523 n.2866T>C non_coding_transcript_exon_variant 0.21
rrl 1476524 n.2867C>A non_coding_transcript_exon_variant 0.92
rrl 1476524 n.2867C>T non_coding_transcript_exon_variant 0.95
rrl 1476525 n.2868A>G non_coding_transcript_exon_variant 0.97
rrl 1476528 n.2871A>G non_coding_transcript_exon_variant 0.3
rrl 1476530 n.2873C>T non_coding_transcript_exon_variant 0.66
rrl 1476536 n.2879G>A non_coding_transcript_exon_variant 0.95
rrl 1476537 n.2880A>G non_coding_transcript_exon_variant 0.16
rrl 1476538 n.2881A>G non_coding_transcript_exon_variant 0.41
rrl 1476539 n.2882A>G non_coding_transcript_exon_variant 0.79
rrl 1476540 n.2883C>G non_coding_transcript_exon_variant 0.78
rrl 1476547 n.2890C>T non_coding_transcript_exon_variant 0.69
rrl 1476567 n.2910C>T non_coding_transcript_exon_variant 0.3
rrl 1476583 n.2926G>A non_coding_transcript_exon_variant 0.26
rrl 1476584 n.2927C>T non_coding_transcript_exon_variant 0.74
rrl 1476585 n.2928A>G non_coding_transcript_exon_variant 0.52
rrl 1476594 n.2937C>A non_coding_transcript_exon_variant 0.27
rrl 1476600 n.2943A>C non_coding_transcript_exon_variant 0.38
rrl 1476603 n.2946G>T non_coding_transcript_exon_variant 0.29
rrl 1476607 n.2950C>T non_coding_transcript_exon_variant 0.28
rrl 1476608 n.2951C>G non_coding_transcript_exon_variant 0.61
rrl 1476613 n.2956G>A non_coding_transcript_exon_variant 0.22
rrl 1476614 n.2957A>T non_coding_transcript_exon_variant 0.61
rrl 1476616 n.2959A>G non_coding_transcript_exon_variant 0.61
rrl 1476619 n.2962C>T non_coding_transcript_exon_variant 0.61
rrl 1476628 n.2971T>G non_coding_transcript_exon_variant 0.62
rrl 1476629 n.2972C>A non_coding_transcript_exon_variant 0.62
rrl 1476630 n.2973A>G non_coding_transcript_exon_variant 0.25
rrl 1476633 n.2976A>G non_coding_transcript_exon_variant 0.31
rrl 1476664 n.3007T>A non_coding_transcript_exon_variant 0.18
rrl 1476668 n.3011C>T non_coding_transcript_exon_variant 0.18
rpsA 1833661 c.120A>G synonymous_variant 0.2
rpsA 1833667 c.126C>T synonymous_variant 0.21
rpsA 1833668 p.Ile43Val missense_variant 0.21
rpsA 1833676 c.135A>G synonymous_variant 0.24
rpsA 1833679 c.138G>C synonymous_variant 0.23
rpsA 1833685 c.144G>T synonymous_variant 0.17
rpsA 1833688 c.147C>T synonymous_variant 0.17
rpsA 1833694 c.153G>C synonymous_variant 0.2
rpsA 1833727 c.186G>C synonymous_variant 0.23
rpsA 1833732 p.Pro64Leu missense_variant 0.21
rpsA 1833736 c.195C>T synonymous_variant 0.22
rpsA 1833742 c.201A>G synonymous_variant 0.22
rpsA 1833770 p.Asn77Asp missense_variant 0.17
rpsA 1833781 c.240T>C synonymous_variant 0.13
rpsA 1833874 c.333T>C synonymous_variant 0.3
rpsA 1833905 p.Lys122Glu missense_variant 0.32
rpsA 1833912 p.Glu124Gly missense_variant 0.3
rpsA 1833915 p.Ala125Val missense_variant 0.3
rpsA 1833921 p.Lys127Thr missense_variant 0.32
rpsA 1833926 p.Thr129Ser missense_variant 0.32
rpsA 1833940 c.399C>T synonymous_variant 0.22
rpsA 1833949 c.408T>C synonymous_variant 0.27
rpsA 1833952 c.411C>T synonymous_variant 0.19
rpsA 1833955 c.414G>T synonymous_variant 0.33
rpsA 1833961 c.420C>G synonymous_variant 0.21
rpsA 1833970 c.429G>C synonymous_variant 0.44
rpsA 1833976 c.435C>T synonymous_variant 0.5
rpsA 1833979 c.438T>C synonymous_variant 0.59
rpsA 1833991 c.450C>A synonymous_variant 0.28
rpsA 1833994 c.453G>C synonymous_variant 0.58
rpsA 1833997 c.456G>C synonymous_variant 0.33
rpsA 1834000 c.459G>T synonymous_variant 0.23
rpsA 1834009 c.468C>T synonymous_variant 0.33
rpsA 1834012 c.471G>C synonymous_variant 0.53
rpsA 1834015 c.474G>C synonymous_variant 0.38
rpsA 1834024 c.483G>C synonymous_variant 0.26
rpsA 1834026 c.486delG frameshift_variant 0.23
rpsA 1834030 c.489C>T synonymous_variant 0.21
rpsA 1834034 p.Ile165Val missense_variant 0.14
rpsA 1834039 c.498C>T synonymous_variant 0.31
rpsA 1834040 p.Lys167Arg missense_variant 0.5
rpsA 1834043 p.Glu168Gln missense_variant 0.21
rpsA 1834051 c.510G>A synonymous_variant 0.32
rpsA 1834054 c.513C>G synonymous_variant 0.33
rpsA 1834063 c.522C>T synonymous_variant 0.15
rpsA 1834069 c.528G>C synonymous_variant 0.15
rpsA 1834093 c.552G>C synonymous_variant 0.29
rpsA 1834096 c.555G>C synonymous_variant 0.14
rpsA 1834102 c.561T>C synonymous_variant 0.21
rpsA 1834246 c.705G>C synonymous_variant 0.18
rpsA 1834249 c.708T>C synonymous_variant 0.27
rpsA 1834261 c.720A>G synonymous_variant 0.45
rpsA 1834264 c.723G>C synonymous_variant 0.48
rpsA 1834285 c.744G>C synonymous_variant 0.34
rpsA 1834294 c.753G>C synonymous_variant 0.43
rpsA 1834298 p.Gln253Glu missense_variant 0.43
rpsA 1834303 c.762T>C synonymous_variant 0.29
rpsA 1834306 c.765T>C synonymous_variant 0.35
rpsA 1834307 p.Asp256Asn missense_variant 0.32
rpsA 1834318 c.777C>G synonymous_variant 0.28
rpsA 1834327 c.786G>C synonymous_variant 0.3
rpsA 1834330 c.789C>G synonymous_variant 0.27
rpsA 1834340 p.Met267Phe missense_variant 0.27
rpsA 1834348 c.807T>C synonymous_variant 0.32
rpsA 1834354 c.813G>C synonymous_variant 0.32
rpsA 1834357 c.816T>C synonymous_variant 0.32
rpsA 1834360 c.819G>C synonymous_variant 0.32
rpsA 1834361 c.820T>C synonymous_variant 0.31
rpsA 1834366 c.825A>G synonymous_variant 0.3
rpsA 1834378 c.837T>C synonymous_variant 0.31
rpsA 1834384 c.843A>G synonymous_variant 0.24
rpsA 1834411 c.870T>C synonymous_variant 0.19
rpsA 1834417 c.876G>C synonymous_variant 0.15
rpsA 1834474 c.933C>G synonymous_variant 0.13
rpsA 1834486 p.Glu315Asp missense_variant 0.19
rpsA 1834489 c.948T>C synonymous_variant 0.25
rpsA 1834504 c.963G>C synonymous_variant 0.35
rpsA 1834522 c.981C>G synonymous_variant 0.36
rpsA 1834523 p.Glu328Gln missense_variant 0.36
rpsA 1834528 c.987T>G synonymous_variant 0.36
rpsA 1834540 c.999G>C synonymous_variant 0.36
rpsA 1834546 p.Asp335Glu missense_variant 0.33
rpsA 1834552 c.1013_1015delTTG disruptive_inframe_deletion 0.25
rpsA 1834558 c.1017_1018insAAG conservative_inframe_insertion 0.27
rpsA 1834570 p.Asp343Glu missense_variant 0.33
rpsA 1834572 p.Ala344Val missense_variant 0.23
rpsA 1834574 p.Met345Phe missense_variant 0.23
rpsA 1834612 c.1071G>C synonymous_variant 0.13
rpsA 1834618 c.1077G>C synonymous_variant 0.14
rpsA 1834619 c.1078T>C synonymous_variant 0.14
tlyA 1917972 c.33A>G synonymous_variant 1.0
Rv1979c 2223293 c.-129A>G upstream_gene_variant 1.0
kasA 2517991 c.-124T>A upstream_gene_variant 0.14
ahpC 2726408 c.216T>C synonymous_variant 0.12
folC 2747392 c.207C>T synonymous_variant 1.0
pepQ 2860159 p.Ala87Gly missense_variant 0.17
fbiD 3339734 p.Ala206Gly missense_variant 0.67
Rv3236c 3612059 p.Ala353Asp missense_variant 0.2
Rv3236c 3612872 p.Phe82Ser missense_variant 0.12
Rv3236c 3612998 p.Gly40Val missense_variant 1.0
rpoA 3878295 c.213A>G synonymous_variant 0.25
rpoA 3878298 p.Lys70Thr missense_variant 0.25
rpoA 3878304 c.204G>A synonymous_variant 0.25
rpoA 3878310 c.198G>T synonymous_variant 0.27
rpoA 3878313 c.195G>T synonymous_variant 0.25
rpoA 3878317 p.Thr64Ser missense_variant 0.23
rpoA 3878322 c.186A>G synonymous_variant 0.23
rpoA 3878331 c.177A>T synonymous_variant 0.25
rpoA 3878337 c.171T>C synonymous_variant 0.25
rpoA 3878343 c.165C>T synonymous_variant 0.23
rpoA 3878348 p.Ile54Val missense_variant 0.23
rpoA 3878355 c.153C>T synonymous_variant 0.23
rpoA 3878361 c.147G>C synonymous_variant 0.2
rpoA 3878364 c.144A>C synonymous_variant 0.19
rpoA 3878373 c.135G>C synonymous_variant 0.17
rpoA 3878376 c.132G>C synonymous_variant 0.17
rpoA 3878394 c.114G>C synonymous_variant 0.18
rpoA 3878397 c.111G>C synonymous_variant 0.19
rpoA 3878400 c.108T>C synonymous_variant 0.19
rpoA 3878403 c.105C>T synonymous_variant 0.19
rpoA 3878408 p.Leu34Met missense_variant 0.18
clpC1 4038860 c.1845G>C synonymous_variant 0.15
clpC1 4038875 c.1830C>G synonymous_variant 0.16
clpC1 4038878 c.1827A>G synonymous_variant 0.17
clpC1 4039610 c.1095G>C synonymous_variant 0.22
clpC1 4039694 c.1011G>C synonymous_variant 0.32
clpC1 4039714 p.Tyr331His missense_variant 0.25
clpC1 4039724 c.981A>G synonymous_variant 0.25
clpC1 4039730 c.975C>G synonymous_variant 0.24
clpC1 4039733 c.972G>C synonymous_variant 0.18
clpC1 4039769 c.936C>G synonymous_variant 0.17
clpC1 4039773 p.Lys311Met missense_variant 0.18
clpC1 4039787 c.918G>C synonymous_variant 0.2
clpC1 4039793 c.912C>T synonymous_variant 0.21
clpC1 4039817 c.888A>T synonymous_variant 0.21
clpC1 4039820 c.885T>C synonymous_variant 0.18
clpC1 4039829 c.874_876delTTGinsCTT synonymous_variant 0.16
clpC1 4039838 p.Leu289Ile missense_variant 0.16
clpC1 4039850 c.855T>C synonymous_variant 0.14
clpC1 4039865 c.840T>C synonymous_variant 0.13
clpC1 4039875 p.Asn277Arg missense_variant 0.14
clpC1 4039883 c.822G>A synonymous_variant 0.18
clpC1 4040024 c.681A>G synonymous_variant 0.17
clpC1 4040033 c.672G>C synonymous_variant 0.24
clpC1 4040042 c.663C>T synonymous_variant 0.14
clpC1 4040057 c.648C>T synonymous_variant 0.16
clpC1 4040063 c.642G>C synonymous_variant 0.13
clpC1 4040069 c.636G>C synonymous_variant 0.18
clpC1 4040084 c.621C>T synonymous_variant 0.15
clpC1 4040087 c.618G>C synonymous_variant 0.15
clpC1 4040090 c.615T>C synonymous_variant 0.29
clpC1 4040096 c.609G>C synonymous_variant 0.29
clpC1 4040108 p.Arg199Ser missense_variant 0.17
clpC1 4040111 c.594G>A synonymous_variant 0.19
clpC1 4040114 p.Ile197Met missense_variant 0.33
clpC1 4040117 c.588A>G synonymous_variant 0.32
clpC1 4040123 p.Glu194His missense_variant 0.18
clpC1 4040147 p.Lys186Glu missense_variant 0.24
embA 4242643 c.-590C>T upstream_gene_variant 1.0
embB 4246527 p.Ala5Gly missense_variant 0.29
embB 4248324 p.Ala604Gly missense_variant 0.25
whiB6 4338595 c.-75delG upstream_gene_variant 1.0
Rv3083 3448507 c.5_*1408del frameshift_variant&stop_lost&splice_region_variant 1.0