lineage | Count |
---|---|
lineage1.2.1.2.1 | 1 |
La1.8.2 | 1 |
lineage3.1 | 1 |
lineage4.9 | 9 |
lineage4.8 | 6 |
lineage4 | 4 |
lineage2.2.1 | 6 |
lineage4.5 | 1 |
lineage3 | 8 |
lineage6 | 1 |
lineage4.1.2.1 | 4 |
lineage1 | 1 |
lineage4.4.1.1 | 4 |
lineage4.1.1.3.1 | 3 |
lineage4.8.2 | 1 |
lineage1.2.2.2 | 1 |
lineage4.3.4.2 | 1 |
lineage3.1.1 | 1 |
lineage1.1.3.1 | 1 |
2 | |
lineage4.7 | 1 |
lineage4.3.3 | 2 |
lineage4.1.3 | 1 |
lineage4.2.2.2 | 1 |
lineage5.1.1 | 1 |
lineage4.9;lineage4.1 | 1 |
lineage4.3.4.1 | 1 |
lineage4.3.4 | 1 |
lineage1.2.2 | 1 |
lineage4.1 | 1 |
lineage5 | 1 |
spoligotype | Count |
---|---|
None | 69 |
ID | Drug resistance | Lineage | Country iso2 | ERR4817010 | HR-TB | lineage1.2.1.2.1 | None | ERR4816133 | Other | La1.8.2 | None | ERR2027290 | RR-TB | lineage3.1 | None | SRR3675552 | RR-TB | lineage4.9 | None | ERR2229234 | RR-TB | lineage4.8 | None | ERR2229233 | Sensitive | lineage4 | None | ERR4816745 | Pre-XDR-TB | lineage2.2.1 | None | ERR4817826 | RR-TB | lineage4.5 | None | ERR4819017 | RR-TB | lineage3 | None | ERR4818787 | MDR-TB | lineage6 | None | ERR4818128 | RR-TB | lineage4.1.2.1 | None | ERR4818126 | RR-TB | lineage1 | None | ERR2515055 | Other | lineage3 | None | SRR5007168 | RR-TB | lineage4.9 | None | ERR4818851 | RR-TB | lineage4.4.1.1 | None | ERR4818393 | RR-TB | lineage3 | None | SRR5007161 | RR-TB | lineage4.1.1.3.1 | None | ERR4818355 | Other | lineage3 | None | ERR3276170 | Other | lineage4.1.2.1 | nl | SRR5007169 | RR-TB | lineage4.8.2 | None | SRR5007167 | RR-TB | lineage4.1.1.3.1 | None | SRR5007170 | RR-TB | lineage4.9 | None | ERR4817555 | RR-TB | lineage3 | None | SRR5007193 | RR-TB | lineage4.1.1.3.1 | None | ERR4817584 | MDR-TB | lineage3 | None | ERR4819096 | Other | lineage4.4.1.1 | None | ERR2446154 | Sensitive | lineage4.4.1.1 | nl | ERR3275615 | Sensitive | lineage4.4.1.1 | nl | ERR4819217 | Other | lineage1.2.2.2 | None | ERR4820265 | Other | lineage4.1.2.1 | None | ERR4820324 | Other | lineage4 | None | ERR4819307 | RR-TB | lineage4 | None | ERR4820746 | RR-TB | lineage3 | None | ERR4819706 | MDR-TB | lineage4.3.4.2 | None | ERR4820410 | Pre-XDR-TB | lineage3.1.1 | None | ERR4819864 | RR-TB | lineage1.1.3.1 | None | ERR4820107 | RR-TB | None | ERR4820833 | HR-TB | None | ERR4821286 | Other | lineage4.8 | None | ERR552643 | Sensitive | lineage4.7 | None | ERR4820151 | RR-TB | lineage4.8 | None | ERR4820666 | Other | lineage4.8 | gb | ERR4821704 | MDR-TB | lineage4.3.3 | None | ERR4821334 | RR-TB | lineage4.1.3 | None | ERR4822261 | RR-TB | lineage2.2.1 | None | SRR6044841 | Other | lineage4.9 | None | SRR5818586 | RR-TB | lineage4.2.2.2 | None | SRR6046733 | Pre-XDR-TB | lineage2.2.1 | None | SRR6045957 | Other | lineage4.9 | None | SRR6045267 | RR-TB | lineage4 | None | ERR502517 | MDR-TB | lineage5.1.1 | None | SRR1181250 | Other | lineage4.9 | None | ERR10796560 | MDR-TB | lineage4.9;lineage4.1 | None | ERR1035282 | MDR-TB | lineage4.3.4.1 | br | ERR10796564 | Other | lineage4.3.3 | None | ERR10796565 | RR-TB | lineage4.9 | None | ERR10796598 | RR-TB | lineage4.9 | None | ERR10796633 | RR-TB | lineage4.3.4 | None | SRR1735596 | RR-TB | lineage4.9 | None | SRR18002881 | Pre-XDR-TB | lineage2.2.1 | None | ERR4815225 | RR-TB | lineage1.2.2 | None | SRR18002967 | Pre-XDR-TB | lineage2.2.1 | None | SRR18003023 | Other | lineage2.2.1 | None | SRR19303820 | RR-TB | lineage4.8 | None | SRR3675230 | RR-TB | lineage3 | None | ERR4814841 | Other | lineage4.1 | None | ERR4815572 | Other | lineage4.1.2.1 | None | SAMEA3501073 | RR-TB | lineage4.8 | None | ERR4816967 | RR-TB | lineage5 | None |
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