lineage | Count |
---|---|
lineage2.2.2 | 6 |
lineage4.1.1.3 | 12 |
lineage4.5 | 9 |
lineage2.2.1 | 193 |
lineage4.1.2.1 | 52 |
lineage3 | 68 |
lineage4.8 | 40 |
lineage6.1.3 | 5 |
lineage4.4.1.1 | 15 |
lineage4.6.2.2 | 9 |
lineage4.2.2 | 4 |
lineage4.7 | 15 |
lineage4.2.1 | 11 |
lineage4.2.1.1;lineage4.8 | 1 |
lineage4.3.3 | 22 |
lineage4.3.4.2 | 10 |
lineage1.2.2.2 | 12 |
lineage4 | 4 |
lineage4.9 | 61 |
lineage4.3.4.2.1 | 4 |
lineage2.2.1;lineage4.9 | 1 |
lineage2.2.1.1 | 5 |
lineage4.1.1.3.1 | 4 |
lineage3.1 | 3 |
lineage4.3.2 | 9 |
lineage1.1.2 | 10 |
lineage4.2.2.2 | 11 |
lineage3.1.2 | 6 |
M.canetti;lineage2.1;lineage4.9;lineage6.3 | 1 |
lineage4.3.2.1 | 4 |
lineage3.1.2.2 | 4 |
lineage1.2.1.1 | 2 |
lineage4.1.2 | 5 |
lineage2.2.1;lineage4 | 1 |
lineage3.1.2;lineage4.9 | 1 |
lineage1.2.1.2.1 | 6 |
lineage6.3.2 | 1 |
lineage4.6.5 | 5 |
lineage3.1.2.1 | 3 |
lineage2.2.1;lineage2.2.2 | 1 |
lineage3;lineage4.9 | 4 |
lineage4.4.1.1.1 | 6 |
lineage4.3 | 2 |
lineage4.1.1.1 | 10 |
lineage2.2.1.2 | 1 |
lineage2.2;lineage4 | 1 |
lineage4.8.2 | 4 |
lineage1.1.3.3 | 2 |
lineage1.1.3 | 1 |
lineage3.1.1 | 11 |
lineage3;lineage4.2.2.2 | 2 |
La1.2 | 1 |
lineage4.2.1.1 | 2 |
lineage4.8.1 | 5 |
lineage1.1.1.1 | 1 |
lineage4.1.3 | 3 |
lineage4.6 | 3 |
lineage3.1.1;lineage4 | 1 |
lineage4.3.1.1 | 8 |
lineage4.3.4.2;lineage4.7 | 2 |
lineage3.1.2.1;lineage4 | 2 |
lineage2.2.1;lineage4.1.2.1 | 1 |
lineage1.1.1 | 1 |
lineage4.1.2.1;lineage4.9 | 1 |
lineage3.1.3 | 1 |
La1.7;lineage4.9 | 1 |
lineage6.1.2 | 1 |
lineage4.4 | 1 |
lineage3;lineage4 | 1 |
lineage1.1.3.1 | 3 |
lineage4.1.4 | 3 |
La3 | 1 |
lineage4.4.2 | 2 |
lineage4.1.1.3.1;lineage4.9 | 1 |
lineage4.1.1.2 | 2 |
lineage4.2.1.1;lineage4.3.3 | 1 |
lineage2.2.1;lineage4.8 | 1 |
La1.7;lineage2.2.1 | 1 |
lineage1.2.2.1 | 1 |
lineage4.3.4.1 | 2 |
La1.8.1 | 4 |
M.canetti;lineage2.1;lineage4.9 | 1 |
lineage4.8.2;lineage4.9 | 1 |
lineage4.4.1.2 | 1 |
La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | 1 |
lineage4.3.4.1;lineage4.9 | 1 |
lineage3.1.2.1;lineage4.9 | 1 |
lineage4.6.3 | 1 |
lineage4.6.1.1 | 1 |
lineage4.1 | 1 |
lineage6.1.1 | 1 |
lineage4.4.1.1.1;lineage4.8 | 1 |
La1.7;M.canetti;lineage4.9 | 2 |
lineage5.1.3 | 1 |
lineage2.2.1;lineage4.5 | 1 |
M.canetti;lineage4.9 | 1 |
La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9 | 1 |
lineage1.1.3.2 | 2 |
lineage4.9.1 | 1 |
lineage2.2;lineage4.9 | 1 |
spoligotype | Count |
---|---|
None | 759 |
ID | Drug resistance | Lineage | Country iso2 | SRR18002998 | Pre-XDR-TB | lineage2.2.2 | None | SRR6045621 | Other | lineage4.1.1.3 | None | SRR7069959 | Other | lineage4.5 | None | SRR3675485 | Other | lineage2.2.1 | None | SRR19304035 | Other | lineage4.1.2.1 | None | ERR4821538 | Other | lineage3 | None | SRR7070144 | Other | lineage4.8 | None | SRR6045743 | Other | lineage3 | None | ERR4829344 | Other | lineage6.1.3 | None | SRR16295770 | Other | lineage2.2.1 | None | SRR16295808 | Other | lineage2.2.1 | None | SRR21239878 | HR-TB | lineage4.4.1.1 | None | SRR7068946 | Other | lineage4.6.2.2 | None | SRR9971333 | MDR-TB | lineage4.1.1.3 | None | ERR4820318 | Other | lineage4.2.2 | None | SRR11342646 | HR-TB | lineage3 | None | ERR5979407 | Other | lineage3 | None | ERR6197025 | Sensitive | lineage4.7 | None | SRR11349205 | MDR-TB | lineage2.2.1 | None | SRR7755649 | MDR-TB | lineage4.2.1 | None | ERR2027252 | Other | lineage4.2.1.1;lineage4.8 | None | ERR4815452 | Other | lineage4.3.3 | None | ERR4818977 | Other | lineage4.1.2.1 | None | SRR11342692 | MDR-TB | lineage2.2.1 | None | SRR11342673 | RR-TB | lineage4.3.4.2 | None | SRR16295809 | Other | lineage2.2.1 | None | SRR17567917 | RR-TB | lineage4.4.1.1 | None | SRR18003002 | MDR-TB | lineage2.2.1 | None | SRR5818672 | Other | lineage1.2.2.2 | None | SRR6045726 | Other | lineage3 | None | ERR4814312 | Other | lineage4 | None | SRR1208306 | Other | lineage4.9 | None | SRR19303907 | Other | lineage4.8 | None | SRR7070525 | Other | lineage4.3.4.2.1 | None | SRR7131163 | Other | lineage2.2.1 | None | ERR2513405 | Other | lineage2.2.1 | None | SRR12708406 | HR-TB | lineage2.2.1;lineage4.9 | None | SRR7069839 | Other | lineage4.8 | None | SRR18002960 | XDR-TB | lineage2.2.1 | None | SRR18002981 | Other | lineage2.2.1 | None | SRR22424778 | RR-TB | lineage2.2.1.1 | None | ERR4818637 | Other | lineage4.8 | None | SRR6044873 | Other | lineage4.1.1.3.1 | None | SRR6045778 | Other | lineage3.1 | None | ERR9786452 | Other | lineage4.3.2 | None | SRR6045986 | Other | lineage3 | None | ERR4829328 | Other | lineage2.2.1 | None | SRR7069018 | Other | lineage4.8 | None | SRR6046739 | Other | lineage1.1.2 | None | ERR4815795 | Other | lineage1.1.2 | None | ERR4817046 | Other | lineage3 | None | ERR4819334 | Other | lineage4.2.2.2 | gb | ERR10796591 | Other | lineage4.9 | None | SRR6046273 | Other | lineage3.1.2 | None | SRR16295817 | Other | lineage2.2.1 | None | ERR5865303 | Pre-XDR-TB | lineage2.2.1 | None | ERR9117729 | Sensitive | lineage3 | None | ERR9117732 | Other | lineage1.2.2.2 | None | SRR6045952 | HR-TB | M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | SRR11349147 | RR-TB | lineage4.3.2.1 | None | SRR10315465 | MDR-TB | lineage4.4.1.1 | None | SRR7070632 | Sensitive | lineage3 | None | ERR4814783 | Other | lineage4.7 | None | SRR7645928 | Other | lineage4.7 | None | ERR4819699 | HR-TB | lineage4.6.2.2 | gb | SRR16295742 | Other | lineage2.2.1 | None | SRR16295766 | Other | lineage2.2.1 | None | SRR10430377 | MDR-TB | lineage2.2.1 | None | SRR7069033 | Sensitive | lineage4.2.1 | None | SRR7645906 | Other | lineage2.2.1 | None | ERR4817475 | Other | lineage4.1.1.3 | gb | SRR7068875 | Other | lineage3.1.2.2 | None | ERR4816866 | Other | lineage2.2.1 | None | SRR7069377 | Other | lineage3 | None | SRR12062482 | MDR-TB | lineage2.2.1.1 | None | SRR7069754 | Other | lineage4.3.2 | None | SRR16295787 | Other | lineage2.2.1 | None | ERR2027209 | MDR-TB | lineage1.2.1.1 | None | ERR867527 | Pre-XDR-TB | lineage2.2.1 | None | SRR18002891 | MDR-TB | lineage2.2.1 | None | SRR11342658 | RR-TB | lineage4.1.2 | None | SRR16295749 | Other | lineage2.2.1 | None | SRR9971101 | XDR-TB | lineage4.1.2.1 | None | ERR867568 | Other | lineage2.2.1;lineage4 | None | SRR6045547 | Sensitive | lineage3.1.2;lineage4.9 | gb | ERR4821179 | Other | lineage4.1.2.1 | gb | ERR4829313 | XDR-TB | lineage4.8 | None | SRR11342683 | Other | lineage4.1.2 | None | SRR11342649 | MDR-TB | lineage4.3.3 | None | SRR9971105 | XDR-TB | lineage4.4.1.1 | None | SRR18003042 | Other | lineage2.2.1 | None | SRR7070185 | Other | lineage3 | None | ERR4815792 | Other | lineage4.1.2.1 | None | SRR7069899 | Other | lineage1.2.1.2.1 | None | SRR2101627 | Other | lineage4.1.2.1 | None | SRR1202408 | Other | lineage4.9 | None | SRR6045110 | Other | lineage3 | None | ERR5336160 | Other | lineage6.3.2 | None | SRR16295806 | Other | lineage2.2.1 | None | SRR11349211 | Pre-XDR-TB | lineage4.3.3 | None | ERR4822138 | Other | lineage4.1.2.1 | None | ERR3276005 | Other | lineage4.1.2.1 | nl | ERR9117827 | Other | lineage1.2.2.2 | None | SRR13180246 | HR-TB | lineage4.8 | None | ERR9117814 | Sensitive | lineage3 | None | ERR9907741 | MDR-TB | lineage4.3.2.1 | None | SRR22175249 | Pre-XDR-TB | lineage2.2.1 | None | SRR6045957 | Other | lineage4.9 | None | SRR6044817 | Other | lineage3 | None | SRR6045664 | Other | lineage4.2.1 | None | SRR7070504 | Other | lineage3 | None | SRR16295746 | Other | lineage2.2.1 | None | SRR16295783 | Other | lineage2.2.1 | None | SRR16295789 | Sensitive | lineage2.2.1 | None | ERR4814745 | Other | lineage4.6.5 | None | SRR7069766 | Other | lineage4.1.2.1 | None | SRR7069800 | Other | lineage3.1.2.1 | None | SRR18002876 | MDR-TB | lineage2.2.1;lineage2.2.2 | None | SRR7645899 | Other | lineage2.2.1 | None | SRR5007163 | Other | lineage3;lineage4.9 | None | SRR7069255 | Other | lineage4.1.2 | None | SRR9971351 | RR-TB | lineage2.2.1 | None | SRR7069518 | Other | lineage4.8 | None | SRR7069835 | Other | lineage2.2.1 | None | ERR7801176 | RR-TB | lineage4.6.5 | None | SRR7069431 | Other | lineage4.1.2.1 | None | SRR7131237 | Other | lineage2.2.1 | None | SRR14782113 | Pre-XDR-TB | lineage4.2.1 | None | SRR10315707 | MDR-TB | lineage4.4.1.1.1 | None | ERR9907760 | Pre-XDR-TB | lineage4.3 | None | ERR867555 | Other | lineage3 | None | SRR11342642 | MDR-TB | lineage4.1.1.1 | None | SRR7070532 | Other | lineage4.7 | None | SRR3675225 | Other | lineage2.2.1.2 | None | SRR16156832 | RR-TB | lineage2.2;lineage4 | None | SRR16295735 | Other | lineage2.2.1 | None | ERR3804166 | Other | lineage4.3.2 | None | SRR10303325 | MDR-TB | lineage2.2.1 | None | SRR7131028 | Other | lineage4.8 | None | SRR6045267 | RR-TB | lineage4.8 | None | SRR5007169 | RR-TB | lineage4.8.2 | None | ERR867574 | Other | lineage4.9 | None | SRR16295744 | Other | lineage2.2.1 | None | SRR7070535 | HR-TB | lineage4.1.2.1 | None | ERR6197042 | Other | lineage4.9 | None | ERR4815413 | Other | lineage4.3.4.2.1 | None | SRR7645927 | Other | lineage4.8 | None | SRR10315579 | Other | lineage2.2.1.1 | None | ERR4820404 | Other | lineage4.3.2 | None | ERR4815901 | Other | lineage2.2.2 | None | SRR18002997 | Other | lineage2.2.1 | None | ERR4819224 | Other | lineage1.2.1.2.1 | None | ERR4822066 | Other | lineage4.1.2.1 | None | SRR11342691 | MDR-TB | lineage2.2.1 | None | SRR6982429 | Sensitive | lineage2.2.1 | None | SRR7069812 | Sensitive | lineage4.1.1.1 | None | SRR7069027 | MDR-TB | lineage4.3.4.2 | None | SRR16295797 | Other | lineage2.2.1 | None | SRR7069399 | Other | lineage3 | None | SRR16295790 | Other | lineage2.2.1 | None | SRR11342655 | MDR-TB | lineage2.2.1 | None | ERR4817987 | Other | lineage4.7 | None | ERR4821791 | Other | lineage4.1.2.1 | None | ERR10219868 | Other | lineage4.1.2.1 | None | SRR11342664 | MDR-TB | lineage2.2.2 | None | SRR6045312 | Other | lineage1.1.3.3 | None | SRR10315630 | MDR-TB | lineage4.3.3 | None | ERR4816093 | Other | lineage1.1.3 | None | SRR21001883 | XDR-TB | lineage2.2.1 | None | SRR7070157 | Other | lineage4.1.1.3.1 | None | SRR7068927 | Other | lineage1.2.2.2 | None | SRR1735598 | RR-TB | lineage4.9 | None | SRR5007171 | Sensitive | lineage2.2.1 | None | SRR7070134 | Other | lineage3.1.1 | None | SRR6046291 | Other | lineage3 | None | SRR6046766 | Other | lineage3.1.1 | None | SRR11349207 | RR-TB | lineage2.2.1 | None | SRR9971122 | MDR-TB | lineage4.8 | None | ERR4816429 | Other | lineage1.1.2 | None | ERR4596929 | MDR-TB | lineage3;lineage4.2.2.2 | None | ERR4769418 | Other | La1.2 | None | SRR16295743 | Other | lineage2.2.1 | None | SRR16295751 | Other | lineage2.2.1 | None | SRR16295822 | Other | lineage2.2.1 | None | SRR6045052 | HR-TB | lineage4.2.1.1 | None | SRR6046729 | Other | lineage3 | None | ERR4820746 | Other | lineage3 | None | SRR1208281 | Sensitive | lineage4.9 | None | SRR7069391 | Other | lineage4.9 | None | SRR15316084 | Other | lineage2.2.1 | None | SRR16295810 | Other | lineage2.2.1 | None | SRR18003031 | HR-TB | lineage2.2.1 | None | SRR6046457 | Other | lineage3 | gb | SRR9971369 | MDR-TB | lineage4.1.1.3 | None | ERR10796597 | Other | lineage4.3.3 | None | SRR16295792 | Other | lineage2.2.1 | None | SRR11342693 | MDR-TB | lineage4.8.1 | None | SRR16295829 | Other | lineage2.2.1 | None | SRR11349145 | Pre-XDR-TB | lineage4.4.1.1.1 | None | SRR6044952 | Other | lineage4.9 | None | SRR6044838 | Other | lineage4.9 | None | SRR6045909 | Other | lineage4.8.1 | None | SRR6046612 | Other | lineage1.1.1.1 | None | ERR4403541 | Sensitive | lineage4.8 | None | SRR16295741 | Other | lineage2.2.1 | None | SRR16295753 | Other | lineage2.2.1 | None | SRR16295816 | Other | lineage2.2.1 | None | SRR16295828 | Other | lineage2.2.1 | None | ERR4816688 | Other | lineage4.2.2.2 | gb | SRR7131287 | Other | lineage2.2.1.1 | None | ERR867570 | RR-TB | lineage4.9 | None | ERR3261351 | Other | lineage4.9 | None | SRR6046701 | Other | lineage3.1.2.2 | None | SRR7765062 | Pre-XDR-TB | lineage4.1.2.1 | None | SRR16295780 | Other | lineage2.2.1 | None | SRR16295784 | Other | lineage2.2.1 | None | ERR6197026 | Other | lineage4.9 | None | SRR11342662 | MDR-TB | lineage4.8.1 | None | SRR14782539 | MDR-TB | lineage4.2.1 | None | ERR4815905 | Other | lineage1.2.2.2 | gb | SRR9971017 | HR-TB | lineage2.2.1 | None | SRR9971223 | Other | lineage2.2.1 | None | ERR4817479 | Other | lineage4.1.3 | None | ERR3148546 | Other | lineage4.3.2 | None | SRR18002874 | MDR-TB | lineage2.2.1 | None | SRR1208532 | Other | lineage4.9 | None | SRR21798279 | MDR-TB | lineage2.2.1 | None | SRR7069294 | Sensitive | lineage3.1 | None | SRR7755657 | Other | lineage4.8 | None | SRR6044936 | Other | lineage4.6 | None | SRR5818622 | Sensitive | lineage4.2.2.2 | None | SRR6046275 | Other | lineage3.1.1;lineage4 | None | ERR4819131 | Other | lineage4.8 | None | ERR4819513 | Other | lineage4.3.2 | None | SRR16295803 | Other | lineage2.2.1 | None | SRR9971025 | Other | lineage2.2.1 | None | ERR9117812 | Other | lineage4.3.1.1 | None | ERR4822261 | RR-TB | lineage2.2.1 | None | SRR11342668 | Pre-XDR-TB | lineage4.8.1 | None | SRR11349191 | Pre-XDR-TB | lineage4.3.3 | None | SRR10851730 | Other | lineage4.3.3 | None | SRR16295775 | Other | lineage2.2.1 | None | SRR11342640 | MDR-TB | lineage4.3.3 | None | SRR6046815 | Other | lineage3 | None | ERR4814362 | Other | lineage4.8 | None | SRR6045485 | Other | lineage4.9 | None | SRR19303820 | RR-TB | lineage4.8 | None | SRR16295752 | Other | lineage2.2.1 | None | SRR7070553 | Other | lineage3 | None | ERR4820720 | Other | lineage4.1.2.1 | None | SRR6045464 | Other | lineage4.1.1.3 | None | SRR6046607 | Other | lineage3 | None | SRR6046852 | MDR-TB | lineage3 | None | SRR1173719 | Other | lineage4.9 | None | SRR3675265 | Other | lineage4 | None | SRR3675565 | Other | lineage4 | None | ERR6197023 | MDR-TB | lineage4.3.4.2;lineage4.7 | None | SRR11871432 | Pre-XDR-TB | lineage2.2.1 | None | ERR4769554 | RR-TB | lineage4.9 | None | SRR6045071 | Other | lineage4.3.1.1 | None | SRR6046655 | Other | lineage4.1.2.1 | None | SRR18213721 | Other | lineage4.8 | None | SRR7069954 | Other | lineage1.2.2.2 | None | ERR4817751 | Other | lineage1.1.3.3 | None | SRR7070461 | Other | lineage3 | None | ERR4819307 | Other | lineage4.3.2 | None | SRR3675552 | Other | lineage4.9 | None | SRR6046117 | Other | lineage4.9 | None | SRR7131068 | Other | lineage4.8 | None | ERR2513681 | Other | lineage1.1.2 | None | SRR16295759 | Sensitive | lineage2.2.1 | None | SRR6046517 | Other | lineage4.8 | None | ERR867538 | Other | lineage4.2.2.2 | None | SRR11349148 | RR-TB | lineage2.2.1 | None | SRR18003038 | Other | lineage2.2.1 | None | ERR867575 | Other | lineage4.9 | None | SRR7070469 | Other | lineage4.3.1.1 | None | ERR867569 | Other | lineage4.9 | None | SRR16295830 | Other | lineage2.2.1 | None | ERR4818272 | Other | lineage4.3.2 | None | SRR7069946 | Other | lineage4.8 | None | ERR3275941 | RR-TB | lineage4.3 | nl | SRR21240202 | HR-TB | lineage4.4.1.1 | None | SRR6045683 | Other | lineage3.1.2.1;lineage4 | None | ERR4863405 | Pre-XDR-TB | lineage2.2.1;lineage4.1.2.1 | None | SRR6046818 | Other | lineage4.2.1 | gb | SRR16295800 | Sensitive | lineage2.2.1 | None | SRR16295776 | Other | lineage2.2.1 | None | SRR16295825 | Other | lineage2.2.1 | None | SRR7069628 | Other | lineage4.1.2.1 | None | SRR21658550 | Other | lineage1.1.1 | None | SRR11342682 | Other | lineage4.1.2 | None | SRR7069013 | Other | lineage4.8 | None | SRR6045553 | Other | lineage4.1.2.1;lineage4.9 | None | SRR6045613 | Other | lineage3.1.3 | None | SRR7755645 | Pre-XDR-TB | lineage2.2.1 | None | SRR7070065 | Other | lineage4.1.1.1 | None | SRR3675267 | Other | La1.7;lineage4.9 | None | ERR867567 | RR-TB | lineage3 | None | SRR16295813 | Other | lineage2.2.1 | None | SRR16295826 | Other | lineage2.2.1 | None | ERR4818178 | Sensitive | lineage4.1.2.1 | None | ERR9907785 | RR-TB | lineage4.3.2.1 | None | SRR18002976 | Other | lineage2.2.1 | None | SRR16295750 | Other | lineage2.2.1 | None | SRR5818647 | Other | lineage4.3.4.2.1 | None | SRR19304094 | Other | lineage6.1.2 | None | SRR16627752 | RR-TB | lineage4.4 | None | ERR4769433 | RR-TB | lineage4.9 | None | SRR3675230 | Other | lineage3;lineage4 | None | SRR6045618 | Other | lineage3.1.2 | None | SRR6045763 | Pre-XDR-TB | lineage2.2.1 | None | SRR7069120 | Sensitive | lineage3 | None | ERR4819012 | Other | lineage1.1.2 | None | SRR7069082 | Other | lineage4.1.2.1 | None | SRR16295801 | Other | lineage2.2.1 | None | SRR7070515 | Other | lineage1.1.3.1 | None | SRR7070602 | Other | lineage4.2.1 | None | SRR7070636 | Other | lineage4.1.2.1 | None | SRR7131122 | Other | lineage2.2.1 | None | SRR7131195 | Other | lineage2.2.1 | None | ERR867525 | Pre-XDR-TB | lineage2.2.1 | None | SRR16295761 | Other | lineage2.2.1 | None | ERR867573 | Other | lineage4.9 | None | SRR6046485 | Other | lineage4.9 | None | ERR3283006 | RR-TB | lineage4.9 | None | SRR7070165 | Other | lineage4.1.2.1 | None | SRR7070321 | Sensitive | lineage4.5 | None | ERR5979454 | Pre-XDR-TB | lineage3 | None | ERR4352119 | HR-TB | lineage4.3.4.2 | None | ERR4814782 | HR-TB | lineage2.2.1 | None | ERR4817822 | Other | lineage4.6 | None | SRR6044993 | Other | lineage3 | None | SRR18003023 | Other | lineage2.2.1 | None | ERR4821288 | Other | lineage4.7 | None | SRR3675556 | Other | lineage3 | None | ERR9907777 | RR-TB | lineage4.3.4.2.1 | None | SRR7069722 | Other | lineage4.1.2.1 | None | SRR7069760 | Other | lineage3 | None | SRR7070373 | Other | lineage4.1.1.1 | None | ERR4815837 | Other | lineage4.1.4 | gb | ERR4815517 | Other | lineage1.2.2.2 | None | ERR867521 | MDR-TB | lineage2.2.1 | None | SRR18003024 | RR-TB | lineage2.2.1 | None | SRR6785282 | Other | lineage4.3.3 | None | SRR6896535 | Other | lineage4.1.1.3 | None | SRR11342671 | RR-TB | lineage4.1.3 | None | SRR16295758 | Other | lineage2.2.1 | None | SRR9971372 | MDR-TB | lineage4.1.1.1 | None | ERR4820543 | Other | La3 | None | ERR4820787 | Other | lineage3.1.1 | gb | SRR5818610 | Other | lineage3 | None | ERR2027256 | Other | lineage4.1.2 | None | SRR16295785 | Other | lineage2.2.1 | None | SRR16295786 | Other | lineage2.2.1 | None | SRR11342648 | MDR-TB | lineage4.1.1.3 | None | SRR1208683 | Other | lineage4.9 | None | SRR18002902 | Sensitive | lineage2.2.1 | None | SRR18002932 | Pre-XDR-TB | lineage2.2.1 | None | SRR6046343 | Other | lineage2.2.1 | None | ERR2027293 | Other | lineage4.3.4.2 | None | ERR2600613 | Sensitive | lineage4.8 | None | ERR4816745 | Pre-XDR-TB | lineage2.2.1 | None | SRR7069097 | Other | lineage3.1.2.1 | None | SRR7069314 | Other | lineage3 | None | SRR12062493 | Pre-XDR-TB | lineage4.4.2 | None | SRR3675288 | Other | lineage3 | None | SRR6789630 | Sensitive | lineage4.1.1.3 | None | SRR5818694 | Other | lineage3;lineage4.2.2.2 | None | SRR18002947 | MDR-TB | lineage2.2.1 | None | SRR18213736 | Other | lineage3 | None | ERR10762275 | MDR-TB | lineage4.2.1 | None | ERR4818008 | Other | lineage4.3.3 | None | ERR4818261 | Other | lineage1.1.2 | None | SRR1209015 | Sensitive | lineage4.9 | None | SRR3675261 | Other | lineage1.2.1.1 | None | SRR21240077 | Other | lineage4.1.2.1 | None | SRR16295764 | Other | lineage2.2.1 | None | SRR16295771 | Other | lineage2.2.1 | None | SRR16295798 | Other | lineage2.2.1 | None | ERR4819073 | Other | lineage4.1.2.1 | None | SRR7068912 | Pre-XDR-TB | lineage2.2.1 | None | SRR7069164 | Other | lineage4.8 | None | ERR4820151 | Other | lineage4.8 | None | SRR7070564 | Other | lineage4.8.2 | None | ERR2851354 | Other | lineage4.9 | None | SRR6045445 | Other | lineage4.3.1.1 | None | SRR19303964 | Other | lineage4.7 | None | SRR16295732 | Other | lineage2.2.1 | None | SRR6045138 | Other | lineage3.1.1 | None | SRR6045424 | Other | lineage1.1.2 | None | SRR11342680 | Other | lineage4.8 | None | SRR6045894 | Other | lineage4.8 | None | ERR4192398 | Other | lineage6.1.3 | None | SRR7070665 | HR-TB | lineage3 | None | SRR5007161 | RR-TB | lineage4.1.1.3.1;lineage4.9 | None | SRR5007165 | Other | lineage3 | None | SRR10315464 | MDR-TB | lineage4.4.1.1 | None | SRR7069473 | Other | lineage4.1.1.2 | None | ERR867542 | HR-TB | lineage4.2.1.1;lineage4.3.3 | None | SRR18003015 | MDR-TB | lineage2.2.1 | None | SRR16295748 | Other | lineage2.2.1 | None | SRR7069931 | Other | lineage4.2.2.2 | None | SRR11342684 | HR-TB | lineage4.4.1.1 | None | ERR4816610 | Other | lineage4.3.3 | None | ERR10219876 | Other | lineage4.3.4.2 | None | ERR2600562 | MDR-TB | lineage2.2.1;lineage4.8 | None | ERR4820187 | Other | lineage4.3.3 | None | ERR4819017 | Other | lineage3 | None | ERR4816462 | Other | lineage4.1.2.1 | None | SRR6046440 | Other | lineage3.1.2.2 | None | SRR6045124 | Other | lineage4.9 | None | SRR7131236 | Other | lineage4.3.4.2 | None | SRR18002974 | Other | lineage2.2.1 | None | SRR1735596 | RR-TB | lineage4.9 | None | SRR16295738 | Other | lineage2.2.1 | None | SRR16295788 | Other | lineage2.2.1 | None | SRR11342669 | Other | lineage4.8 | None | ERR4815022 | Other | lineage3.1.2.1 | None | SRR5007167 | RR-TB | lineage4.1.1.3.1 | None | SRR7755655 | Other | lineage4.1.2.1 | None | SRR3675474 | Other | lineage4.1.1.1 | None | SRR6045843 | Other | lineage4.2.2.2 | None | SRR6046616 | Other | lineage4.3.1.1 | None | SRR7069802 | Other | lineage3 | None | SRR6045248 | Sensitive | lineage3.1.1 | None | SRR6046456 | Other | lineage4.1.1.3.1 | None | ERR4815427 | HR-TB | lineage3.1 | gb | ERR7801175 | HR-TB | lineage4.6.5 | None | SRR7131123 | Other | lineage4.8 | None | ERR2600609 | Other | lineage4.8 | None | SRR20969923 | Other | La1.7;lineage2.2.1 | None | ERR4815551 | Other | lineage2.2.1 | None | SRR3675491 | Other | lineage4.7 | None | ERR4829208 | Other | lineage4.8 | None | SRR7069784 | Other | lineage1.2.2.2 | None | SRR7070388 | Other | lineage3.1.2 | None | SRR7068984 | Other | lineage4.8 | None | SRR11342687 | RR-TB | lineage4.2.2.2 | None | ERR4821372 | Other | lineage4.1.2.1 | None | ERR4820967 | Other | lineage3;lineage4.9 | None | SRR7069675 | Other | lineage3 | None | ERR867526 | MDR-TB | lineage2.2.1 | None | SRR6044983 | Other | lineage3.1.1 | None | SRR7070497 | Other | lineage4.8.2 | None | SRR16295756 | Other | lineage2.2.1 | None | ERR9117740 | Other | lineage3.1.1 | None | SRR11342656 | MDR-TB | lineage2.2.1 | None | SRR7070369 | Other | lineage1.2.2.2 | None | SRR18002901 | MDR-TB | lineage2.2.1 | None | SRR18002963 | Other | lineage2.2.1 | None | SRR7070399 | Other | lineage2.2.1 | None | SRR6045603 | Other | lineage4.1.1.3 | None | SRR7131147 | Other | lineage4.1.2.1 | None | SRR7131198 | Other | lineage4.3.3 | None | SRR7070521 | Other | lineage4.2.1.1 | None | ERR2660505 | Other | lineage1.2.2.1 | None | SRR18002984 | MDR-TB | lineage2.2.2 | None | SRR11349175 | Other | lineage2.2.1 | None | SRR18002937 | Other | lineage2.2.1 | None | SRR6045805 | Other | lineage4.3.1.1 | None | SRR16295768 | Other | lineage2.2.1 | None | SRR11349196 | MDR-TB | lineage2.2.1 | None | ERR4815425 | Other | lineage4.5 | gb | SRR16295754 | Other | lineage2.2.1 | None | ERR867554 | Other | lineage4.3.4.1 | None | SRR7070293 | Other | lineage4.8 | None | SRR6046020 | Other | lineage3 | None | ERR4815832 | Other | lineage3 | None | ERR4817569 | Other | lineage4.3.4.1 | None | SRR6982141 | Other | lineage4.3.3 | None | SRR7645901 | MDR-TB | lineage2.2.1 | None | SRR6046152 | Other | lineage4.9 | None | ERR4818570 | Other | lineage4.3.3 | None | SRR16295824 | Other | lineage2.2.1 | None | ERR9117699 | Other | lineage4.1.2.1 | None | SRR7070276 | Other | lineage3 | None | SRR16295747 | Other | lineage2.2.1 | None | SRR19303876 | Other | lineage4.7 | None | SRR16295814 | Other | lineage2.2.1 | None | SRR18002903 | Pre-XDR-TB | lineage2.2.1 | None | SRR16295820 | Other | lineage2.2.1 | None | SRR1202417 | Other | lineage4.9 | None | SRR16295763 | Other | lineage2.2.1 | None | ERR9117725 | Other | lineage4.1.1.1 | None | SRR16295819 | Other | lineage2.2.1 | None | ERR867572 | Other | lineage4.9 | None | SRR16295779 | Other | lineage2.2.1 | None | SRR16295734 | Sensitive | lineage2.2.1 | None | SRR11342636 | MDR-TB | lineage4.3.3 | None | ERR867523 | Pre-XDR-TB | lineage2.2.1 | None | ERR4820862 | Other | lineage2.2.1.1 | None | ERR2514345 | Sensitive | lineage4.8 | gb | ERR4821334 | Other | lineage4.1.3 | None | ERR9117805 | Other | lineage4.3.2 | None | SRR6046177 | Other | lineage3.1.2 | None | SRR16295762 | Other | lineage2.2.1 | None | SRR7131032 | Other | lineage2.2.1 | None | SRR6046764 | Other | lineage4.2.2 | None | ERR4820162 | Other | lineage4.1.1.3 | None | SRR6046376 | Other | lineage3 | None | ERR4872152 | RR-TB | lineage4.6.2.2 | None | SRR7070087 | Other | lineage4.8.1 | None | ERR9117678 | Other | lineage4.6.2.2 | None | SRR8600099 | Other | La1.8.1 | None | SRR7131145 | Other | lineage4.1.2.1 | None | SRR11342643 | MDR-TB | lineage4.1.1.1 | None | ERR4819211 | Other | lineage4.7 | None | SRR7131004 | Other | lineage4.6.2.2 | None | SRR11342698 | RR-TB | lineage4.4.1.1 | None | SRR20969951 | Other | lineage4.4.2 | None | SRR6045290 | RR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR18002881 | Pre-XDR-TB | lineage2.2.1 | None | ERR4815909 | Other | lineage4.8 | None | SRR6824324 | Other | lineage4.5 | None | SRR6046089 | Other | lineage4.1.2.1 | None | ERR4814761 | Other | lineage4.8 | gb | SRR16295821 | Other | lineage2.2.1 | None | SRR16295757 | Other | lineage2.2.1 | None | SRR1019127 | Other | lineage4.9 | None | ERR4816043 | Other | lineage4.2.2 | None | ERR4821616 | Other | lineage1.1.3.1 | None | SRR6045705 | Other | lineage4.9 | None | ERR4816951 | HR-TB | lineage4.1.2.1 | gb | ERR3797062 | RR-TB | lineage4.9 | None | SRR11342685 | HR-TB | lineage4.4.1.1 | None | ERR867522 | Pre-XDR-TB | lineage2.2.1 | None | SRR5007168 | Other | lineage4.8.2;lineage4.9 | None | ERR867566 | Other | lineage4.9 | None | SRR11342696 | MDR-TB | lineage4.4.1.1.1 | None | ERR126597 | HR-TB | lineage4.4.1.2 | None | ERR4822032 | Other | lineage2.2.1 | gb | ERR4817584 | Other | lineage3;lineage4.9 | None | SRR1208947 | Other | lineage4.9 | None | ERR4820075 | Other | lineage4.1.2.1 | None | SRR9971256 | MDR-TB | lineage2.2.1 | None | SRR21728726 | HR-TB | lineage1.2.1.2.1 | None | SRR16295796 | Other | lineage2.2.1 | None | SRR11349135 | XDR-TB | lineage4.3.3 | None | ERR4821679 | Other | lineage4.3.3 | None | SRR6045017 | Other | lineage3.1.2.2 | None | ERR3559289 | HR-TB | lineage4.2.2 | None | SRR6982391 | Other | lineage4.1.2.1 | None | SRR11342647 | MDR-TB | lineage4.1.1.3 | None | SRR7069233 | Other | lineage1.2.2.2 | None | SRR7131201 | Other | lineage4.8 | None | ERR502470 | RR-TB | lineage4.9 | None | ERR4819377 | Other | lineage3.1.2.1;lineage4 | None | SRR16295793 | Other | lineage2.2.1 | None | SRR22048392 | Other | lineage4.8 | None | SRR7069005 | Other | lineage3.1.2 | None | SRR16295760 | Other | lineage2.2.1 | None | ERR867571 | Other | lineage4.9 | None | SRR7070153 | Sensitive | lineage4.1.2.1 | None | SRR6045045 | Other | lineage2.2.1 | None | SRR18002908 | Other | lineage2.2.1 | None | SRR16295767 | Other | lineage2.2.1 | None | SRR16295736 | Other | lineage2.2.1 | None | SRR16295745 | Other | lineage2.2.1 | None | SRR6046541 | Other | lineage4.9 | None | ERR2851359 | Other | lineage4.9 | None | SRR11342686 | MDR-TB | lineage4.8 | None | SRR3675291 | Sensitive | lineage4.6 | gb | SRR11342651 | MDR-TB | lineage4.1.1.1 | None | SRR9970996 | XDR-TB | lineage4.4.1.1 | None | SRR6046521 | Other | lineage4.4.1.1 | None | SRR19303949 | Other | lineage4.3.3 | None | ERR6197043 | MDR-TB | lineage4.3.4.2 | None | SRR9971201 | MDR-TB | lineage4.4.1.1.1 | None | ERR3261359 | Other | lineage4.9 | None | SRR3675461 | RR-TB | lineage4.9 | None | SRR3675389 | Other | lineage4.9 | None | SRR11342660 | MDR-TB | lineage2.2.1 | None | SRR19304095 | Other | lineage4.1.2.1 | None | ERR4821704 | Other | lineage4.3.3 | None | SRR6046482 | Other | La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | None | ERR4818926 | HR-TB | lineage4.6.2.2 | gb | SRR3675245 | Other | lineage4.1.2.1 | None | ERR4818465 | Other | lineage3 | gb | ERR6197041 | MDR-TB | lineage4.3.4.2 | None | ERR4821796 | Other | lineage4.1.1.1 | None | SRR7069193 | Other | lineage4.3.1.1 | None | SRR8217893 | HR-TB | lineage2.2.1 | None | ERR4820060 | Other | lineage4.3.3 | None | ERR10796572 | Other | lineage4.3.4.1;lineage4.9 | None | ERR4816667 | Other | lineage2.2.2 | None | SRR7131251 | Other | lineage2.2.1 | None | SRR6153166 | Other | lineage1.2.1.2.1 | ca | SRR16295777 | Other | lineage2.2.1 | None | ERR4815005 | Other | lineage4.1.2.1 | None | SRR11349208 | MDR-TB | lineage2.2.1 | None | ERR2027290 | Other | lineage3.1.2.1;lineage4.9 | None | SRR6045163 | Other | lineage2.2.1 | None | SRR6045288 | Other | lineage3 | gb | SRR1208421 | Other | lineage4.9 | None | SRR1208677 | Other | lineage4.9 | None | ERR867540 | MDR-TB | lineage2.2.1 | None | SRR7070329 | Other | lineage3 | None | ERR9117714 | Other | lineage3.1.2 | None | SRR5818586 | RR-TB | lineage4.2.2.2 | None | SRR7069063 | Other | lineage3 | None | ERR1665403 | MDR-TB | lineage2.2.1 | None | SRR7069669 | Other | lineage3.1.1 | None | SRR1208565 | Other | lineage4.9 | None | SRR6045178 | Other | lineage3 | None | SRR6045496 | Other | lineage6.1.3 | None | SRR3675452 | Other | lineage3 | None | SRR3675483 | Other | lineage4.1.2.1 | None | SRR7070176 | Other | lineage3 | None | SRR7070266 | Other | lineage1.1.2 | None | SRR7069137 | Other | lineage4.8 | None | ERR4816579 | Other | lineage3 | None | SRR7070419 | Other | lineage3 | None | SRR16295818 | Other | lineage2.2.1 | None | ERR4817368 | Other | lineage4.6.3 | None | SRR7069319 | Other | lineage4.5 | None | ERR4820918 | Other | lineage4.9 | None | ERR4818187 | Other | lineage4.6.1.1 | gb | SRR6045024 | Other | lineage4.1.1.2 | None | SRR18002909 | MDR-TB | lineage2.2.1 | None | SRR7069981 | Other | lineage3 | None | SRR18213726 | Other | lineage3 | None | ERR4817189 | Other | lineage4.7 | None | ERR4819622 | Other | lineage4.1.2.1 | None | SRR10726045 | MDR-TB | lineage4.3.3 | None | ERR2027255 | HR-TB | lineage4.4.1.1 | None | SRR11342644 | MDR-TB | lineage4.4.1.1.1 | None | SRR6045261 | Other | lineage1.1.2 | gb | SRR6046250 | Other | lineage4.9 | None | ERR2120270 | MDR-TB | lineage4.6.5 | None | ERR4820410 | RR-TB | lineage3.1.1 | None | SRR6044904 | Other | lineage3 | None | SRR6045158 | Other | lineage4.9 | None | SRR16295765 | Other | lineage2.2.1 | None | ERR4276854 | MDR-TB | lineage4.2.1 | None | ERR6197021 | MDR-TB | lineage4.3.4.2;lineage4.7 | None | ERR6197028 | Sensitive | lineage4.9 | None | SRR7069216 | Other | lineage4.1.2.1 | None | SRR1208900 | Other | lineage4.9 | None | SRR18002964 | Other | lineage2.2.1 | None | ERR4815137 | Other | lineage4.1 | gb | SRR7070154 | Other | lineage4.4.1.1 | None | SRR16295791 | Other | lineage2.2.1 | None | SRR6045855 | Sensitive | lineage3 | None | ERR4192392 | Other | lineage6.1.1 | None | SRR3675512 | Other | lineage2.2.1 | None | ERR4817826 | Other | lineage4.5 | None | ERR4820922 | Other | lineage4.1.2.1 | gb | ERR4820833 | Other | lineage3;lineage4.9 | None | SRR3675497 | Other | lineage4.1.2.1 | None | SRR16295804 | Other | lineage2.2.1 | None | SRR10315728 | MDR-TB | lineage4.4.1.1.1;lineage4.8 | None | ERR4819864 | RR-TB | lineage1.1.3.1 | None | ERR4819679 | Other | lineage3 | None | SRR6397975 | Sensitive | lineage4.1.2.1 | ca | SRR6045422 | Other | lineage4.3.1.1 | None | SRR7236108 | Other | La1.8.1 | None | SRR6046159 | Other | lineage4.8.2 | None | SRR6045887 | Other | La1.7;M.canetti;lineage4.9 | None | SRR7070181 | Other | lineage3 | None | SRR16295737 | Other | lineage2.2.1 | None | SRR16295782 | Other | lineage2.2.1 | None | SRR6046783 | Other | La1.7;M.canetti;lineage4.9 | None | SRR6045591 | Other | lineage4.1.2.1 | None | SRR6045516 | Other | lineage3.1.1 | None | ERR9117676 | Sensitive | lineage4.2.2.2 | None | SRR7069128 | Other | lineage1.2.1.2.1 | None | ERR10762483 | MDR-TB | lineage2.2.1 | None | ERR4815917 | Other | lineage2.2.1 | gb | SRR6045199 | Other | lineage2.2.1 | None | SRR7070184 | HR-TB | lineage4.6.2.2 | None | SRR6511600 | MDR-TB | lineage4.3.4.2 | None | SRR6855774 | Other | lineage2.2.1 | None | SRR7069999 | Sensitive | lineage5.1.3 | None | ERR4811035 | Pre-XDR-TB | lineage2.2.1;lineage4.5 | None | ERR6197039 | MDR-TB | lineage4.3.4.2 | None | SRR6046484 | Other | lineage1.2.2.2 | None | SRR11342688 | Other | lineage4.2.2.2 | None | SRR6044841 | Other | lineage4.9 | None | SRR6046246 | Other | lineage3 | None | SRR18003047 | MDR-TB | lineage2.2.1 | None | SRR11342653 | MDR-TB | lineage2.2.1 | None | SRR18003007 | MDR-TB | lineage4.5 | None | ERR2513837 | Sensitive | lineage4.1.2.1 | gb | SRR16295811 | Other | lineage2.2.1 | None | SRR16295807 | Other | lineage2.2.1 | None | ERR4814551 | Sensitive | lineage4.1.2.1 | gb | ERR4816883 | Other | lineage4.5 | None | ERR4192554 | Other | lineage6.1.3 | None | SRR18002967 | HR-TB | lineage2.2.1 | None | SRR5818612 | Other | lineage4.2.2.2 | None | SRR12062542 | Pre-XDR-TB | lineage2.2.1 | None | SRR18003012 | Pre-XDR-TB | lineage2.2.1 | None | SRR6398138 | Sensitive | lineage4.1.2.1 | ca | SRR6046359 | Other | lineage4.7 | None | ERR867541 | MDR-TB | lineage4.2.1 | None | SRR7069251 | Other | lineage3 | None | ERR9117788 | Other | lineage3 | None | SRR16295812 | Other | lineage2.2.1 | None | ERR4829333 | Other | lineage4 | None | SRR1208378 | Other | lineage4.9 | None | SRR1208768 | Other | lineage4.9 | None | SRR6855828 | Other | lineage4.3.2.1 | None | SRR7131053 | Other | lineage2.2.1 | None | ERR4815265 | Other | lineage2.2.1 | None | ERR4820193 | Other | lineage3 | None | SRR13180370 | Other | lineage4.1.4 | None | ERR5311077 | Other | La1.8.1 | None | SRR11349203 | MDR-TB | lineage4.4.1.1 | None | ERR4820332 | Sensitive | lineage2.2.1 | None | SRR6046848 | Other | lineage4.6.5 | None | ERR2600422 | MDR-TB | lineage2.2.1 | None | SRR7070031 | Other | lineage4.5 | None | ERR3468488 | Other | La1.8.1 | None | ERR4815956 | Other | lineage1.1.2 | None | SRR11342638 | MDR-TB | lineage4.4.1.1.1 | None | ERR4818831 | Other | lineage3 | None | ERR4820801 | Other | lineage1.2.2.2 | None | SRR7069648 | Other | lineage4.6.2.2 | None | SRR3675449 | Other | M.canetti;lineage4.9 | None | ERR4817055 | Other | lineage4.1.2.1 | None | ERR3261389 | Other | lineage4.9 | None | SRR6046824 | MDR-TB | La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9 | None | SRR11972323 | Other | lineage1.1.3.2 | None | SRR6045295 | Other | lineage4.7 | None | SRR16295802 | Other | lineage2.2.1 | None | SRR16295731 | Other | lineage2.2.1 | None | SRR11349201 | MDR-TB | lineage4.1.1.3 | None | ERR4192417 | Other | lineage6.1.3 | None | ERR4822105 | Other | lineage4.1.4 | None | ERR4829314 | Other | lineage4.1.2.1 | None | SRR16156697 | RR-TB | lineage2.2.1 | None | SRR16295740 | Other | lineage2.2.1 | None | SRR16295769 | Other | lineage2.2.1 | None | SRR16295773 | Other | lineage2.2.1 | None | SRR18002875 | MDR-TB | lineage2.2.2 | None | SRR3675256 | Other | lineage4.7 | None | SRR7069430 | Other | lineage3.1.1 | None | ERR6197029 | Other | lineage4.7 | None | ERR7821182 | Other | lineage1.1.3.2 | None | SRR11342676 | HR-TB | lineage4.6.2.2 | None | SRR16295827 | Other | lineage2.2.1 | None | SRR16295799 | Other | lineage2.2.1 | None | ERR4819119 | HR-TB | lineage1.2.1.2.1 | gb | ERR037504 | Other | lineage4.9.1 | None | SRR16295755 | Other | lineage2.2.1 | None | SRR16295772 | Other | lineage2.2.1 | None | SRR1208543 | Other | lineage4.9 | None | SRR1202648 | Other | lineage4.9 | None | SRR3675527 | Other | lineage4.9 | None | SRR6046463 | Other | lineage4.4.1.1 | None | SRR6045289 | Other | lineage2.2;lineage4.9 | None | SRR7069880 | MDR-TB | lineage3 | None | SRR7069074 | Other | lineage3 | None | SRR6045384 | Other | lineage4.1.2.1 | None | SRR7645972 | MDR-TB | lineage4.2.1 | None | SRR8217895 | Sensitive | lineage2.2.1 | None | SRR16295774 | Sensitive | lineage2.2.1 | None | SRR7069258 | HR-TB | lineage3 | None |
---|