Run ID: SRR6045163
Sample name:
Date: 04-04-2023 11:53:55
Number of reads: 1692811
Percentage reads mapped: 89.73
Strain: lineage2.2.1
Drug-resistance: Other
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage2 | East-Asian | Beijing | RD105 | 1.0 |
lineage2.2 | East-Asian (Beijing) | Beijing-RD207 | RD105;RD207 | 1.0 |
lineage2.2.1 | East-Asian (Beijing) | Beijing-RD181 | RD105;RD207;RD181 | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|---|---|---|---|---|
rrs | 1472733 | n.888G>A | non_coding_transcript_exon_variant | 0.64 | streptomycin |
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
fgd1 | 491742 | c.960T>C | synonymous_variant | 1.0 |
mshA | 575907 | p.Ala187Val | missense_variant | 1.0 |
ccsA | 620625 | p.Ile245Met | missense_variant | 1.0 |
rpoC | 763031 | c.-339T>C | upstream_gene_variant | 1.0 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
mmpL5 | 776100 | p.Thr794Ile | missense_variant | 1.0 |
mmpL5 | 776182 | p.Asp767Asn | missense_variant | 1.0 |
mmpS5 | 779615 | c.-710C>G | upstream_gene_variant | 1.0 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
Rv1258c | 1406760 | c.580_581insC | frameshift_variant | 1.0 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrs | 1472507 | n.662C>G | non_coding_transcript_exon_variant | 0.5 |
rrs | 1472517 | n.672T>A | non_coding_transcript_exon_variant | 0.5 |
rrs | 1472518 | n.673G>T | non_coding_transcript_exon_variant | 0.5 |
rrs | 1472530 | n.685G>A | non_coding_transcript_exon_variant | 0.5 |
rrs | 1472537 | n.692C>T | non_coding_transcript_exon_variant | 0.56 |
rrs | 1472544 | n.699C>A | non_coding_transcript_exon_variant | 0.56 |
rrs | 1472545 | n.700A>T | non_coding_transcript_exon_variant | 0.56 |
rrs | 1472566 | n.721G>A | non_coding_transcript_exon_variant | 0.58 |
rrs | 1472571 | n.726G>C | non_coding_transcript_exon_variant | 0.64 |
rrs | 1472579 | n.734G>C | non_coding_transcript_exon_variant | 0.5 |
rrs | 1472580 | n.735C>T | non_coding_transcript_exon_variant | 0.36 |
rrs | 1472581 | n.736A>T | non_coding_transcript_exon_variant | 0.8 |
rrs | 1472584 | n.739A>T | non_coding_transcript_exon_variant | 0.2 |
rrs | 1472598 | n.753A>C | non_coding_transcript_exon_variant | 0.64 |
rrs | 1472599 | n.754G>T | non_coding_transcript_exon_variant | 0.64 |
rrs | 1472616 | n.771G>A | non_coding_transcript_exon_variant | 0.31 |
rrs | 1472655 | n.810G>A | non_coding_transcript_exon_variant | 0.86 |
rrs | 1472658 | n.813G>A | non_coding_transcript_exon_variant | 0.83 |
rrs | 1472661 | n.816A>G | non_coding_transcript_exon_variant | 0.71 |
rrs | 1472670 | n.825G>T | non_coding_transcript_exon_variant | 0.67 |
rrs | 1472673 | n.828T>G | non_coding_transcript_exon_variant | 0.5 |
rrs | 1472675 | n.830T>C | non_coding_transcript_exon_variant | 0.67 |
rrs | 1472677 | n.832C>T | non_coding_transcript_exon_variant | 0.67 |
rrs | 1472681 | n.837_838delTT | non_coding_transcript_exon_variant | 0.67 |
rrs | 1472687 | n.843dupT | non_coding_transcript_exon_variant | 0.5 |
rrs | 1472690 | n.845C>A | non_coding_transcript_exon_variant | 0.67 |
rrs | 1472697 | n.852T>C | non_coding_transcript_exon_variant | 0.56 |
rrs | 1472713 | n.868T>C | non_coding_transcript_exon_variant | 0.7 |
rrs | 1472716 | n.871C>T | non_coding_transcript_exon_variant | 0.64 |
rrs | 1472742 | n.897C>T | non_coding_transcript_exon_variant | 0.54 |
rrs | 1472744 | n.899A>G | non_coding_transcript_exon_variant | 0.54 |
rrs | 1472781 | n.936C>T | non_coding_transcript_exon_variant | 0.57 |
rrs | 1472793 | n.948A>T | non_coding_transcript_exon_variant | 0.5 |
rrs | 1473035 | n.1190G>A | non_coding_transcript_exon_variant | 0.3 |
rrs | 1473055 | n.1210C>T | non_coding_transcript_exon_variant | 0.27 |
rrs | 1473056 | n.1211A>T | non_coding_transcript_exon_variant | 0.27 |
rrs | 1473066 | n.1221A>G | non_coding_transcript_exon_variant | 0.42 |
rrs | 1473080 | n.1235C>T | non_coding_transcript_exon_variant | 0.38 |
rrs | 1473081 | n.1236C>T | non_coding_transcript_exon_variant | 0.25 |
rrs | 1473088 | n.1243A>G | non_coding_transcript_exon_variant | 0.5 |
rrs | 1473093 | n.1248C>T | non_coding_transcript_exon_variant | 0.62 |
rrs | 1473100 | n.1255G>A | non_coding_transcript_exon_variant | 0.5 |
rrs | 1473102 | n.1257C>T | non_coding_transcript_exon_variant | 0.5 |
rrs | 1473104 | n.1259C>T | non_coding_transcript_exon_variant | 0.62 |
rrs | 1473110 | n.1265T>G | non_coding_transcript_exon_variant | 0.62 |
rrs | 1473111 | n.1266A>G | non_coding_transcript_exon_variant | 0.5 |
rrs | 1473115 | n.1270G>T | non_coding_transcript_exon_variant | 0.38 |
rrs | 1473121 | n.1276T>C | non_coding_transcript_exon_variant | 0.62 |
rrs | 1473123 | n.1278A>T | non_coding_transcript_exon_variant | 0.29 |
rrs | 1473132 | n.1287T>C | non_coding_transcript_exon_variant | 0.2 |
rrs | 1473145 | n.1300C>T | non_coding_transcript_exon_variant | 0.67 |
rrs | 1473166 | n.1321G>A | non_coding_transcript_exon_variant | 0.56 |
rrs | 1473172 | n.1327T>G | non_coding_transcript_exon_variant | 0.18 |
rrs | 1473173 | n.1328C>T | non_coding_transcript_exon_variant | 0.18 |
rrl | 1474527 | n.870T>C | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474537 | n.880G>A | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474542 | n.885A>G | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475803 | n.2146T>C | non_coding_transcript_exon_variant | 0.2 |
rrl | 1475804 | n.2147G>C | non_coding_transcript_exon_variant | 0.2 |
rrl | 1475816 | n.2159C>G | non_coding_transcript_exon_variant | 0.22 |
rrl | 1475817 | n.2160A>G | non_coding_transcript_exon_variant | 0.25 |
rrl | 1476194 | n.2537A>G | non_coding_transcript_exon_variant | 0.5 |
rrl | 1476195 | n.2538C>A | non_coding_transcript_exon_variant | 0.5 |
rrl | 1476200 | n.2543A>T | non_coding_transcript_exon_variant | 0.67 |
rrl | 1476201 | n.2544C>T | non_coding_transcript_exon_variant | 0.67 |
rrl | 1476204 | n.2547C>A | non_coding_transcript_exon_variant | 0.67 |
rrl | 1476211 | n.2554G>T | non_coding_transcript_exon_variant | 0.5 |
rrl | 1476212 | n.2555T>C | non_coding_transcript_exon_variant | 0.5 |
rrl | 1476214 | n.2557G>C | non_coding_transcript_exon_variant | 0.5 |
rrl | 1476215 | n.2558C>A | non_coding_transcript_exon_variant | 0.5 |
rrl | 1476225 | n.2568T>G | non_coding_transcript_exon_variant | 0.67 |
rrl | 1476227 | n.2570C>T | non_coding_transcript_exon_variant | 0.67 |
rrl | 1476229 | n.2572C>T | non_coding_transcript_exon_variant | 0.67 |
rrl | 1476250 | n.2593C>G | non_coding_transcript_exon_variant | 0.82 |
rrl | 1476251 | n.2594T>C | non_coding_transcript_exon_variant | 0.73 |
rrl | 1476257 | n.2600G>C | non_coding_transcript_exon_variant | 0.75 |
rrl | 1476260 | n.2603A>G | non_coding_transcript_exon_variant | 0.75 |
rrl | 1476280 | n.2623A>C | non_coding_transcript_exon_variant | 0.73 |
rrl | 1476293 | n.2636C>T | non_coding_transcript_exon_variant | 0.71 |
rrl | 1476294 | n.2637A>G | non_coding_transcript_exon_variant | 0.62 |
rrl | 1476295 | n.2638C>G | non_coding_transcript_exon_variant | 0.62 |
rrl | 1476296 | n.2639C>T | non_coding_transcript_exon_variant | 0.62 |
rrl | 1476297 | n.2640C>T | non_coding_transcript_exon_variant | 0.56 |
rrl | 1476301 | n.2644A>T | non_coding_transcript_exon_variant | 0.43 |
rrl | 1476302 | n.2645G>A | non_coding_transcript_exon_variant | 0.56 |
rrl | 1476311 | n.2654G>C | non_coding_transcript_exon_variant | 0.56 |
rrl | 1476312 | n.2655T>C | non_coding_transcript_exon_variant | 0.56 |
rrl | 1476313 | n.2656G>A | non_coding_transcript_exon_variant | 0.56 |
rrl | 1476332 | n.2675G>C | non_coding_transcript_exon_variant | 0.6 |
rrl | 1476338 | n.2681C>T | non_coding_transcript_exon_variant | 0.71 |
rrl | 1476353 | n.2696G>T | non_coding_transcript_exon_variant | 0.75 |
rrl | 1476358 | n.2701T>C | non_coding_transcript_exon_variant | 0.75 |
rrl | 1476369 | n.2712C>T | non_coding_transcript_exon_variant | 0.71 |
rrl | 1476372 | n.2715T>C | non_coding_transcript_exon_variant | 0.71 |
rrl | 1476382 | n.2725A>G | non_coding_transcript_exon_variant | 0.64 |
rrl | 1476383 | n.2726T>A | non_coding_transcript_exon_variant | 0.64 |
rrl | 1476425 | n.2768G>T | non_coding_transcript_exon_variant | 0.67 |
rrl | 1476428 | n.2771C>T | non_coding_transcript_exon_variant | 0.71 |
rrl | 1476429 | n.2772A>C | non_coding_transcript_exon_variant | 0.71 |
rrl | 1476466 | n.2809C>T | non_coding_transcript_exon_variant | 0.18 |
rrl | 1476481 | n.2824T>C | non_coding_transcript_exon_variant | 0.5 |
rrl | 1476506 | n.2849T>C | non_coding_transcript_exon_variant | 0.37 |
rrl | 1476513 | n.2856G>T | non_coding_transcript_exon_variant | 0.18 |
rrl | 1476515 | n.2858C>T | non_coding_transcript_exon_variant | 0.12 |
rrl | 1476523 | n.2866T>C | non_coding_transcript_exon_variant | 0.13 |
rrl | 1476524 | n.2867C>A | non_coding_transcript_exon_variant | 0.13 |
rrl | 1476525 | n.2868A>G | non_coding_transcript_exon_variant | 0.13 |
rrl | 1476538 | n.2881A>G | non_coding_transcript_exon_variant | 0.13 |
rrl | 1476539 | n.2882A>G | non_coding_transcript_exon_variant | 0.13 |
fabG1 | 1674076 | p.Thr213Pro | missense_variant | 0.21 |
rpsA | 1834177 | c.636A>C | synonymous_variant | 1.0 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
katG | 2154724 | p.Arg463Leu | missense_variant | 1.0 |
PPE35 | 2167926 | p.Leu896Ser | missense_variant | 1.0 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
ald | 3086788 | c.-32T>C | upstream_gene_variant | 1.0 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 1.0 |
Rv3236c | 3612813 | p.Thr102Ala | missense_variant | 1.0 |
fbiB | 3642772 | p.Asp413Ala | missense_variant | 0.19 |
clpC1 | 4039484 | c.1221T>G | synonymous_variant | 0.29 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embA | 4243460 | c.228C>T | synonymous_variant | 1.0 |
aftB | 4267647 | p.Asp397Gly | missense_variant | 1.0 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |
gid | 4407588 | c.615A>G | synonymous_variant | 1.0 |
gid | 4407620 | p.Tyr195His | missense_variant | 1.0 |
gid | 4407927 | p.Glu92Asp | missense_variant | 1.0 |