Run ID: ERR4820332
Sample name:
Date: 01-04-2023 16:37:13
Number of reads: 3514644
Percentage reads mapped: 98.51
Strain: lineage2.2.1
Drug-resistance: Other
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage2 | East-Asian | Beijing | RD105 | 1.0 |
lineage2.2 | East-Asian (Beijing) | Beijing-RD207 | RD105;RD207 | 1.0 |
lineage2.2.1 | East-Asian (Beijing) | Beijing-RD181 | RD105;RD207;RD181 | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|---|---|---|---|---|
rrs | 1472733 | n.888G>A | non_coding_transcript_exon_variant | 0.27 | streptomycin |
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
fgd1 | 491742 | c.960T>C | synonymous_variant | 1.0 |
mshA | 575907 | p.Ala187Val | missense_variant | 1.0 |
ccsA | 620625 | p.Ile245Met | missense_variant | 1.0 |
rpoC | 763031 | c.-339T>C | upstream_gene_variant | 1.0 |
rpoC | 766645 | p.Glu1092Asp | missense_variant | 1.0 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
mmpL5 | 776100 | p.Thr794Ile | missense_variant | 1.0 |
mmpL5 | 776182 | p.Asp767Asn | missense_variant | 1.0 |
mmpS5 | 779615 | c.-710C>G | upstream_gene_variant | 1.0 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
Rv1258c | 1406760 | c.580_581insC | frameshift_variant | 1.0 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrs | 1472150 | n.305T>A | non_coding_transcript_exon_variant | 0.17 |
rrs | 1472203 | n.358G>C | non_coding_transcript_exon_variant | 0.11 |
rrs | 1472210 | n.365A>T | non_coding_transcript_exon_variant | 0.11 |
rrs | 1472214 | n.369C>A | non_coding_transcript_exon_variant | 0.12 |
rrs | 1472215 | n.370A>G | non_coding_transcript_exon_variant | 0.13 |
rrs | 1472222 | n.377G>A | non_coding_transcript_exon_variant | 0.14 |
rrs | 1472225 | n.380C>A | non_coding_transcript_exon_variant | 0.14 |
rrs | 1472229 | n.384C>T | non_coding_transcript_exon_variant | 0.14 |
rrs | 1472234 | n.389T>C | non_coding_transcript_exon_variant | 0.13 |
rrs | 1472240 | n.395G>A | non_coding_transcript_exon_variant | 0.15 |
rrs | 1472251 | n.406G>A | non_coding_transcript_exon_variant | 0.15 |
rrs | 1472544 | n.699C>A | non_coding_transcript_exon_variant | 0.21 |
rrs | 1472545 | n.700A>T | non_coding_transcript_exon_variant | 0.21 |
rrs | 1472566 | n.721G>A | non_coding_transcript_exon_variant | 0.24 |
rrs | 1472571 | n.726G>C | non_coding_transcript_exon_variant | 0.27 |
rrs | 1472579 | n.734G>C | non_coding_transcript_exon_variant | 0.27 |
rrs | 1472580 | n.735C>T | non_coding_transcript_exon_variant | 0.31 |
rrs | 1472581 | n.736A>T | non_coding_transcript_exon_variant | 0.31 |
rrs | 1472713 | n.868T>C | non_coding_transcript_exon_variant | 0.22 |
rrs | 1472716 | n.871C>T | non_coding_transcript_exon_variant | 0.22 |
rrs | 1472742 | n.897C>T | non_coding_transcript_exon_variant | 0.21 |
rrs | 1472744 | n.899A>G | non_coding_transcript_exon_variant | 0.29 |
rrs | 1472781 | n.936C>T | non_coding_transcript_exon_variant | 0.35 |
rrs | 1472793 | n.948A>T | non_coding_transcript_exon_variant | 0.4 |
rrs | 1472803 | n.958T>A | non_coding_transcript_exon_variant | 0.47 |
rrl | 1474228 | n.571T>C | non_coding_transcript_exon_variant | 0.33 |
rrl | 1474249 | n.592G>T | non_coding_transcript_exon_variant | 0.29 |
rrl | 1474252 | n.595T>A | non_coding_transcript_exon_variant | 0.29 |
rrl | 1474275 | n.618T>C | non_coding_transcript_exon_variant | 0.22 |
rrl | 1476165 | n.2508T>G | non_coding_transcript_exon_variant | 0.11 |
rrl | 1476225 | n.2568T>G | non_coding_transcript_exon_variant | 0.19 |
rrl | 1476227 | n.2570C>T | non_coding_transcript_exon_variant | 0.21 |
rrl | 1476229 | n.2572C>T | non_coding_transcript_exon_variant | 0.21 |
rrl | 1476250 | n.2593C>G | non_coding_transcript_exon_variant | 0.23 |
rrl | 1476251 | n.2594T>C | non_coding_transcript_exon_variant | 0.23 |
rrl | 1476257 | n.2600G>C | non_coding_transcript_exon_variant | 0.23 |
rrl | 1476260 | n.2603A>G | non_coding_transcript_exon_variant | 0.28 |
rrl | 1476280 | n.2623A>C | non_coding_transcript_exon_variant | 0.32 |
rpsA | 1834177 | c.636A>C | synonymous_variant | 0.98 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
katG | 2154724 | p.Arg463Leu | missense_variant | 1.0 |
PPE35 | 2167926 | p.Leu896Ser | missense_variant | 1.0 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
thyX | 3068089 | c.-144C>T | upstream_gene_variant | 1.0 |
ald | 3086788 | c.-32T>C | upstream_gene_variant | 1.0 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 1.0 |
Rv3236c | 3612813 | p.Thr102Ala | missense_variant | 1.0 |
rpoA | 3878578 | c.-71C>A | upstream_gene_variant | 0.25 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embA | 4243460 | c.228C>T | synonymous_variant | 1.0 |
aftB | 4267647 | p.Asp397Gly | missense_variant | 1.0 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |
gid | 4407588 | c.615A>G | synonymous_variant | 1.0 |
gid | 4407927 | p.Glu92Asp | missense_variant | 1.0 |