lineage | Count |
---|---|
La1.8.1 | 5 |
lineage4.9 | 44 |
lineage6 | 4 |
lineage6.1.3 | 7 |
lineage6.1.1 | 1 |
lineage2.2.1 | 96 |
lineage4.9;La1.3 | 1 |
lineage6.3.2 | 1 |
lineage2.2.2 | 5 |
lineage4.3.2 | 9 |
lineage4.1.1.3 | 20 |
lineage4.6.2.2 | 13 |
lineage1.1.3.2 | 2 |
lineage4.1.2.1 | 78 |
lineage4.8 | 66 |
lineage4.2.2.2 | 13 |
lineage4.6 | 6 |
lineage3.1.2 | 7 |
lineage3 | 87 |
lineage4.3.4.2.1 | 5 |
lineage4.1.1 | 9 |
lineage1.1.2 | 24 |
lineage4.3 | 1 |
lineage1.2.2.2 | 12 |
lineage3.1.1 | 14 |
lineage4.5 | 9 |
lineage1.1.1 | 3 |
lineage4.3.1.1 | 10 |
lineage4.8.2 | 6 |
lineage4.4.1.1 | 17 |
lineage4.9;lineage2.2 | 1 |
lineage4.4.1.1.1 | 1 |
lineage4.3.3 | 30 |
lineage4.8;lineage4.4.1.1.1 | 1 |
lineage4.1.2 | 8 |
lineage4.8.1 | 2 |
lineage1.1.3 | 3 |
lineage2.2.1.1 | 7 |
lineage4.7 | 18 |
lineage4.1.4 | 3 |
lineage4.2.2 | 4 |
lineage4.4.1.2 | 1 |
lineage1.2.1.2.1 | 7 |
lineage4.4.2 | 2 |
lineage3.1.3 | 2 |
lineage4 | 18 |
lineage4.3.4.2 | 7 |
La1.6 | 2 |
lineage3.1 | 6 |
lineage1.1.3.1 | 4 |
17 | |
lineage4.6.5 | 3 |
lineage4.2.1 | 5 |
lineage4.1 | 4 |
lineage1.2.1.1 | 2 |
lineage4.3.4.1 | 8 |
lineage4.3.3;lineage3 | 2 |
lineage5 | 2 |
lineage4.2 | 2 |
lineage4.8;lineage4.2.1.1 | 1 |
La1.8.2 | 1 |
lineage4.1.3 | 3 |
lineage4.6.1.2 | 1 |
lineage4.6.3 | 1 |
La3 | 2 |
lineage1 | 1 |
lineage4.6.1.1 | 1 |
lineage4.1.1.3.1 | 9 |
lineage4;lineage3 | 1 |
lineage4.2.2.1 | 2 |
lineage1.2.2.1 | 2 |
lineage3.1.2.2 | 4 |
lineage4;lineage3.1.2.1 | 1 |
lineage4.9;lineage4.8 | 1 |
lineage1.2.2 | 1 |
lineage4.9;lineage3.1.2 | 1 |
lineage4.3.2.1 | 2 |
lineage4.1.1.2 | 2 |
lineage4.2.2.2;lineage3 | 1 |
lineage4.2.1.1 | 1 |
lineage1.1.3.3 | 1 |
lineage4.8;lineage3 | 1 |
lineage4.9;lineage3 | 1 |
lineage1.1.1.1 | 1 |
lineage4.1.2.1;lineage2.2.1 | 1 |
lineage6.3.1 | 1 |
lineage4.3.4 | 1 |
spoligotype | Count |
---|---|
None | 793 |
ID | Drug resistance | Lineage | Country iso2 | ERR3468435 | Other | La1.8.1 | None | ERR3439391 | Other | La1.8.1 | None | ERR3283053 | Other | lineage4.9 | None | ERR3806588 | Other | lineage6 | None | ERR3468464 | Other | La1.8.1 | None | ERR4192398 | Other | lineage6.1.3 | None | ERR4192392 | Other | lineage6.1.1 | None | ERR4192396 | Other | lineage6.1.3 | None | ERR4192419 | Other | lineage6.1.3 | None | ERR4192417 | Other | lineage6.1.3 | None | ERR4808964 | RR-TB | lineage2.2.1 | None | ERR4192556 | Other | lineage6.1.3 | None | ERR4192554 | Other | lineage6.1.3 | None | ERR4769547 | Sensitive | lineage4.9;La1.3 | None | ERR5336160 | Other | lineage6.3.2 | None | ERR4809333 | Pre-XDR-TB | lineage2.2.2 | None | ERR5865303 | Pre-XDR-TB | lineage2.2.1 | None | ERR6197032 | Other | lineage4.9 | None | ERR6197026 | RR-TB | lineage4.9 | None | ERR6197034 | Other | lineage4.9 | None | ERR6197024 | RR-TB | lineage4.9 | None | ERR6866241 | Other | lineage4.3.2 | None | ERR7821125 | Sensitive | lineage4.1.1.3 | None | ERR9117678 | Other | lineage4.6.2.2 | None | ERR7821182 | Other | lineage1.1.3.2 | None | ERR7975629 | XDR-TB | lineage2.2.1 | None | ERR9027228 | Pre-XDR-TB | lineage2.2.1 | None | ERR9117696 | Other | lineage4.1.2.1 | None | ERR9117675 | Other | lineage4.8 | None | ERR9117676 | Other | lineage4.2.2.2 | None | ERR9117699 | Other | lineage4.1.2.1 | None | ERR9117695 | Other | lineage4.1.2.1 | None | ERR9117704 | Other | lineage4.6 | None | ERR9117714 | Other | lineage3.1.2 | None | ERR9117728 | Other | lineage3 | None | ERR9117711 | Other | lineage4.3.4.2.1 | None | ERR9117729 | Other | lineage3 | None | ERR9117725 | Other | lineage4.1.1 | None | ERR9117730 | Other | lineage1.1.2 | None | ERR9117760 | HR-TB | lineage4.3 | None | ERR9117732 | Other | lineage1.2.2.2 | None | ERR9117740 | Other | lineage3.1.1 | None | ERR9117750 | HR-TB | lineage4.5 | None | ERR9117747 | HR-TB | lineage4.8 | None | ERR9117788 | Other | lineage3 | None | ERR9117780 | Other | lineage4.1.2.1 | None | ERR9117805 | Other | lineage4.3.2 | None | ERR9117806 | Other | lineage4.8 | None | ERR9117814 | Sensitive | lineage3 | None | ERR9117827 | Other | lineage1.2.2.2 | None | ERR9117823 | Other | lineage1.1.1 | None | ERR9117812 | Other | lineage4.3.1.1 | None | ERR9907777 | RR-TB | lineage4.3.4.2.1 | None | ERR983241 | MDR-TB | lineage2.2.1 | None | ERR9117841 | Other | lineage4.8.2 | None | ERR9896153 | RR-TB | lineage4.4.1.1 | None | SRR1019127 | Other | lineage4.9;lineage2.2 | None | SRR10315707 | MDR-TB | lineage4.4.1.1.1 | None | SRR10315465 | MDR-TB | lineage4.4.1.1 | None | SRR10315635 | RR-TB | lineage2.2.1 | None | SRR10315464 | MDR-TB | lineage4.4.1.1 | None | SRR10315640 | MDR-TB | lineage4.8 | None | SRR10851730 | Other | lineage4.3.3 | None | SRR10315728 | MDR-TB | lineage4.8;lineage4.4.1.1.1 | None | SRR11342685 | HR-TB | lineage4.4.1.1 | None | SRR11342683 | Other | lineage4.1.2 | None | SRR11349191 | Pre-XDR-TB | lineage4.3.3 | None | SRR11349135 | XDR-TB | lineage4.3.3 | None | SRR11349148 | RR-TB | lineage2.2.1 | None | SRR11349187 | Pre-XDR-TB | lineage4.8.1 | None | SRR11342688 | Other | lineage4.2.2.2 | None | SRR11349159 | MDR-TB | lineage2.2.2 | None | SRR11349179 | MDR-TB | lineage2.2.1 | None | SRR11349193 | RR-TB | lineage4.1.2 | None | SRR11349207 | RR-TB | lineage2.2.1 | None | SRR11349208 | MDR-TB | lineage2.2.1 | None | SRR1173521 | HR-TB | lineage4.9 | None | SRR1183080 | RR-TB | lineage4.9 | None | SRR1181250 | Other | lineage4.9 | None | SRR1735585 | Sensitive | lineage3 | None | SRR11972323 | RR-TB | lineage1.1.3.2 | None | SRR12199387 | Other | lineage1.1.3 | None | SRR14164664 | HR-TB | lineage4.3.3 | None | SRR15316102 | Other | lineage2.2.1.1 | None | SRR1735596 | RR-TB | lineage4.9 | None | SRR13180300 | Other | lineage4.7 | None | SRR13180370 | Other | lineage4.1.4 | None | SRR13423629 | MDR-TB | lineage2.2.1 | None | SRR15316084 | Other | lineage2.2.1 | None | SRR1735591 | Other | lineage4.1.2.1 | None | SRR18002874 | MDR-TB | lineage2.2.1 | None | SRR18002875 | MDR-TB | lineage2.2.2 | None | SRR18002887 | MDR-TB | lineage2.2.1.1 | None | SRR18002881 | Pre-XDR-TB | lineage2.2.1 | None | SRR18002902 | Other | lineage2.2.1 | None | SRR18002908 | Other | lineage2.2.1 | None | SRR18002903 | Pre-XDR-TB | lineage2.2.1 | None | SRR18002909 | MDR-TB | lineage2.2.1 | None | SRR18002901 | MDR-TB | lineage2.2.1 | None | SRR18002937 | Other | lineage2.2.1 | None | SRR18002932 | Pre-XDR-TB | lineage2.2.1 | None | SRR18002954 | Other | lineage2.2.1 | None | SRR18002947 | MDR-TB | lineage2.2.1 | None | SRR18002941 | RR-TB | lineage2.2.1 | None | SRR18002984 | MDR-TB | lineage2.2.2 | None | SRR18002994 | MDR-TB | lineage4.2.2 | None | SRR18003007 | MDR-TB | lineage4.5 | None | SRR18002998 | Pre-XDR-TB | lineage2.2.2 | None | SRR18002997 | Other | lineage2.2.1 | None | SRR18003012 | Pre-XDR-TB | lineage2.2.1 | None | SRR18003002 | MDR-TB | lineage2.2.1 | None | SRR18003023 | Other | lineage2.2.1 | None | SRR18003015 | MDR-TB | lineage2.2.1 | None | SRR18003038 | Other | lineage2.2.1 | None | SRR18003033 | Other | lineage2.2.1 | None | SRR18213721 | Other | lineage4.8 | None | SRR18003042 | Other | lineage2.2.1 | None | SRR18003047 | MDR-TB | lineage2.2.1 | None | SRR18003052 | Other | lineage2.2.1.1 | None | SRR18213675 | Other | lineage4.8 | None | SRR18213691 | Other | lineage4.8 | None | SRR18213800 | Other | lineage3.1.2 | None | SRR18213726 | Other | lineage3 | None | SRR18213736 | MDR-TB | lineage3 | None | SRR18911231 | Sensitive | lineage4.1.1.3 | None | SRR18909918 | Other | lineage2.2.1.1 | None | SRR18911555 | Other | lineage4.1.2.1 | None | SRR19303805 | Other | lineage4.8 | None | SRR19303796 | Other | lineage4.3.3 | None | SRR19303817 | Other | lineage2.2.1 | None | SRR19303819 | Other | lineage4.6.2.2 | None | SRR19303820 | RR-TB | lineage4.8 | None | SRR19303985 | Other | lineage4.8 | None | SRR19303907 | Other | lineage4.8 | None | SRR19303949 | Other | lineage4.3.3 | None | SRR19303964 | Other | lineage4.7 | None | SRR19304094 | Other | lineage6 | None | SRR19304035 | Other | lineage4.1.2.1 | None | SRR19304095 | Other | lineage4.1.2.1 | None | SRR19304057 | Sensitive | lineage4.4.1.2 | None | SRR19325518 | MDR-TB | lineage2.2.1 | None | SRR19304114 | Other | lineage1.2.1.2.1 | None | SRR20969923 | Other | lineage2.2.1 | None | SRR20969951 | Other | lineage4.4.2 | None | SRR21001883 | XDR-TB | lineage2.2.1 | None | SRR21240202 | HR-TB | lineage4.4.1.1 | None | SRR2101627 | Other | lineage4.1.2.1 | None | SRR21239878 | HR-TB | lineage4.4.1.1 | None | SRR21728726 | HR-TB | lineage1.2.1.2.1 | None | SRR21686114 | Other | lineage3.1.3 | None | SRR21798279 | MDR-TB | lineage2.2.1 | None | SRR22424743 | Pre-XDR-TB | lineage1.1.2 | None | SRR22048392 | Other | lineage4.8 | None | SRR22424910 | HR-TB | lineage4.5 | None | SRR2993039 | MDR-TB | lineage4.3.3 | None | SRR22424905 | RR-TB | lineage4.9 | None | ERR4815268 | Other | lineage4.8 | None | SRR3675474 | Other | lineage4.1.1 | None | ERR4815800 | Other | lineage4.8 | None | ERR4815613 | Other | lineage3 | None | ERR4815261 | Other | lineage4.8 | gb | ERR4814312 | Other | lineage4 | None | ERR4815265 | Other | lineage2.2.1 | None | SRR3675485 | Other | lineage2.2.1 | None | ERR4815641 | Other | lineage4.3.4.2 | gb | ERR4815777 | Other | lineage4.9 | None | ERR4814346 | HR-TB | lineage3 | gb | ERR4814355 | Other | La1.6 | gb | SRR3675491 | Other | lineage4.7 | None | ERR4814362 | Other | lineage4.8 | None | ERR4815795 | Other | lineage1.1.2 | None | ERR4814399 | Other | lineage4.6.2.2 | gb | ERR4815413 | Other | lineage4.3.4.2.1 | None | ERR4814512 | Other | lineage2.2.1 | None | ERR4814551 | Other | lineage4.1.2.1 | gb | SRR3675496 | Other | lineage4.1.1.3 | gb | ERR4815425 | Other | lineage4.5 | gb | ERR4815697 | Sensitive | lineage4.1.2.1 | None | ERR4815427 | HR-TB | lineage3.1 | gb | ERR4815784 | Other | lineage2.2.1 | gb | ERR4814617 | Other | lineage1.1.3.1 | None | ERR4814674 | Sensitive | lineage3 | gb | ERR4815452 | Other | lineage4.3.3 | None | SRR3675220 | Pre-XDR-TB | lineage2.2.1 | None | SRR3675213 | Other | lineage4 | None | ERR4815472 | Other | lineage4.9 | gb | ERR4814681 | Other | lineage2.2.1 | None | ERR4815467 | Other | lineage3 | None | ERR1665403 | MDR-TB | lineage2.2.1 | None | ERR4814714 | Other | lineage3 | None | SRR3675230 | RR-TB | lineage3 | None | SRR3675236 | HR-TB | None | ERR4814745 | Other | lineage4.6.5 | None | SRR3675234 | Other | None | ERR4814761 | Other | lineage4.8 | gb | ERR4815476 | HR-TB | lineage2.2.1 | gb | ERR4814748 | Other | lineage4.8 | None | ERR4814763 | Other | lineage2.2.1 | None | ERR4814815 | Other | lineage4.2.1 | None | ERR4814790 | Other | lineage4.2.1 | None | ERR4814782 | HR-TB | lineage2.2.1 | None | ERR4815787 | Other | lineage2.2.1 | None | ERR4814783 | Other | lineage4.7 | None | ERR4814804 | Other | lineage2.2.1 | None | ERR4815502 | Other | lineage4.1 | None | SRR3675256 | Other | lineage4.7 | None | ERR4814834 | Other | lineage3 | None | SRR3675245 | Other | lineage4.1.2.1 | None | SRR3675251 | Other | lineage4.3.3 | None | SRR3675261 | Other | lineage1.2.1.1 | None | SRR3675265 | Other | lineage4 | None | ERR4814841 | Other | lineage4.1 | None | ERR4815517 | Other | lineage1.2.2.2 | None | ERR4814930 | Other | lineage4.4.1.1 | None | SRR2024953 | MDR-TB | lineage2.2.1 | cn | ERR4815520 | Other | lineage4.8 | None | ERR4814896 | Other | lineage2.2.1.1 | None | SRR3675282 | Other | None | SRR3675287 | Other | lineage3 | None | ERR4814912 | HR-TB | lineage4.3.4.1 | None | ERR4814928 | Sensitive | lineage4.8 | None | SRR3675288 | Other | lineage3 | None | SRR3675361 | Other | lineage1.1.2 | gb | ERR4814939 | Other | lineage4.3.3;lineage3 | gb | ERR4814954 | Other | lineage3.1 | gb | SRR3675291 | Sensitive | lineage4.6 | gb | ERR4815005 | Other | lineage4.1.2.1 | None | SRR3675451 | Sensitive | lineage4.1.2.1 | None | SRR3675453 | Sensitive | lineage4.8.2 | gb | SRR3675452 | Other | lineage3 | None | ERR4815089 | HR-TB | lineage2.2.1 | gb | ERR4816954 | Other | lineage4.1.2.1 | None | ERR4816928 | HR-TB | lineage1.2.2.2 | None | ERR4816940 | Other | lineage3.1.2 | gb | ERR4815837 | Other | lineage4.1.4 | gb | ERR4815832 | Other | lineage3 | None | ERR4816951 | HR-TB | lineage4.1.2.1 | gb | ERR4815909 | Other | lineage4.8 | None | ERR4815898 | Other | lineage3 | None | SRR3675510 | Other | None | ERR4815936 | Other | lineage1.1.2 | None | ERR4815917 | Other | lineage2.2.1 | gb | ERR4816969 | Other | lineage4.8 | None | ERR4816967 | RR-TB | lineage5 | None | ERR4815956 | Other | lineage1.1.2 | None | SRR3675512 | Other | lineage2.2.1 | None | ERR4816043 | Other | lineage4.2 | None | ERR4817526 | Other | lineage4.4.1.1 | gb | SRR3675525 | Other | lineage4.8 | None | SRR3675527 | RR-TB | lineage4.9 | None | SRR3675547 | Other | lineage4.9 | None | ERR4816086 | Other | lineage4.2.2.2 | None | ERR4816089 | Other | lineage4.2.2.2 | gb | ERR4816093 | Other | lineage1.1.3 | None | ERR2027252 | Other | lineage4.8;lineage4.2.1.1 | None | ERR2027209 | MDR-TB | lineage1.2.1.1 | None | ERR4816101 | Other | lineage4.1.2.1 | None | ERR4816129 | HR-TB | lineage4.6.2.2 | gb | ERR2027257 | Other | lineage4.1.2.1 | None | ERR2027256 | Other | lineage4.1.2 | None | ERR4816133 | Other | La1.8.2 | None | ERR2027255 | HR-TB | lineage4.4.1.1 | None | ERR4816184 | Other | lineage4.1.2.1 | None | ERR2027290 | RR-TB | lineage3.1 | None | ERR2027293 | Other | lineage4.3.4.2 | None | ERR4816177 | Other | lineage4.1.2.1 | None | ERR4817046 | Other | lineage3 | None | SRR3675557 | Other | lineage4.9 | None | SRR3675552 | RR-TB | lineage4.9 | None | ERR4817479 | Other | lineage4.1.3 | None | ERR4816227 | RR-TB | lineage3 | None | ERR4817055 | Other | lineage4.1.2.1 | None | ERR4817478 | Other | lineage3 | None | SRR3675556 | Other | lineage3 | None | SRR3675565 | Other | lineage3 | None | ERR4816310 | HR-TB | lineage4.6.1.2 | None | SRR3675567 | Other | lineage4.8 | gb | ERR4817368 | Other | lineage4.6.3 | None | ERR4816334 | Other | lineage4.6.2.2 | None | ERR4816350 | Other | lineage4.9 | gb | ERR4816410 | Other | lineage4.3.3 | gb | ERR4816397 | Other | lineage1.1.2 | None | ERR4816373 | Other | lineage4.1.2 | gb | ERR4816419 | HR-TB | lineage2.2.1 | gb | ERR4816549 | Other | lineage2.2.1 | None | ERR4817086 | Other | lineage1.2.2.2 | gb | ERR4816429 | Other | lineage1.1.2 | None | ERR4817475 | Other | lineage4.1.1.3 | gb | ERR4817134 | HR-TB | lineage2.2.1 | None | ERR4816458 | Other | lineage1.2.2.2 | None | ERR4816462 | Other | lineage4.1.2.1 | None | ERR4817144 | Sensitive | lineage1.1.2 | None | ERR4816571 | Other | lineage1.1.2 | None | ERR4816562 | Other | lineage4 | None | ERR4816677 | Other | lineage4.5 | None | ERR4816579 | Other | lineage3 | None | ERR4817182 | Other | lineage4.7 | None | ERR4816610 | RR-TB | lineage4.3.3 | None | ERR4817189 | Other | lineage4.7 | None | ERR4817492 | HR-TB | lineage3.1 | gb | ERR4816692 | Other | lineage4.1.2.1 | None | ERR4816688 | Other | lineage4.2.2.2 | gb | ERR4816699 | Other | lineage4.6 | None | ERR4817213 | Other | lineage3 | gb | ERR4816745 | Pre-XDR-TB | lineage2.2.1 | None | ERR4816782 | Other | lineage4.1.2.1 | None | ERR4817427 | Other | La3 | None | ERR4816749 | Other | lineage1.1.2 | None | ERR4817426 | Other | lineage4.1 | gb | ERR4816882 | Other | lineage4.8 | None | ERR4817497 | Other | lineage1.1.2 | None | ERR4816846 | Other | lineage6 | gb | ERR4816856 | Other | lineage4.1.2.1 | None | ERR4816800 | Other | lineage4.8 | gb | ERR4816828 | Other | lineage1.1.1 | gb | ERR4816833 | Other | lineage4.1.1.3 | None | ERR4816866 | Other | lineage2.2.1 | None | ERR4817294 | Other | lineage4.1.2 | None | ERR4816883 | Other | lineage4.5 | None | ERR4817735 | Other | lineage4.8 | None | ERR4817710 | Other | lineage1.1.2 | None | ERR4817874 | Other | lineage3 | None | ERR4817822 | Other | lineage4.6 | None | ERR4817826 | RR-TB | lineage4.5 | None | ERR4817811 | Sensitive | lineage4.1.2.1 | None | ERR4818698 | HR-TB | lineage2.2.1 | gb | ERR4817952 | Other | lineage2.2.1 | gb | ERR2510736 | Other | lineage4.1.2.1 | None | ERR4817948 | Other | lineage3 | gb | ERR4817907 | Other | lineage3 | gb | ERR4817976 | HR-TB | lineage4.1.2.1 | None | ERR4819007 | Other | lineage2.2.1 | None | ERR4818064 | Other | lineage4.8 | None | ERR4819012 | Other | lineage1.1.2 | None | ERR4818008 | Other | lineage4.3.3 | None | ERR4818027 | Other | lineage4.8 | None | ERR4817987 | Other | lineage4.7 | None | ERR2510831 | Other | lineage4.3.3 | None | ERR4818028 | Other | lineage4.1.2.1 | None | ERR2513430 | Other | lineage4.1.2.1 | gb | ERR2512460 | Other | lineage1.2.2.2 | gb | ERR4818065 | Other | lineage4.1.2.1 | None | ERR4819017 | RR-TB | lineage3 | None | ERR2515055 | Other | lineage3 | None | ERR2513440 | Other | lineage4.1.1.3 | None | ERR4818787 | MDR-TB | lineage6 | None | ERR4818084 | Other | lineage3.1.1 | gb | ERR4818126 | RR-TB | lineage1 | None | ERR2512504 | Other | lineage4.1.2.1 | gb | ERR4819021 | Other | lineage4.8 | gb | ERR4818128 | RR-TB | lineage4.1.2.1 | None | ERR4818151 | Other | lineage2.2.1 | gb | ERR4819073 | Other | lineage4.1.2.1 | None | ERR4818187 | Other | lineage4.6.1.1 | gb | ERR4818261 | Other | lineage1.1.2 | None | ERR4818232 | Other | lineage4.1.2 | gb | ERR4818260 | Other | lineage4.1.2.1 | None | ERR4818265 | Other | lineage4.1.2.1 | None | ERR4818280 | Other | lineage4.1.2.1 | gb | ERR4818274 | Other | lineage4 | None | ERR2512599 | Other | lineage3 | gb | ERR4818322 | Other | lineage4.1.2.1 | None | ERR4818355 | Other | lineage3 | None | ERR4818897 | Other | lineage4.1.2.1 | gb | ERR4818351 | Other | lineage1.1.3 | None | ERR4818393 | RR-TB | lineage3 | None | ERR4818364 | Other | lineage4.8 | gb | ERR4818370 | Other | lineage4.1.1 | None | ERR3276170 | Other | lineage4.1.2.1 | nl | ERR4818407 | Other | lineage4.3.2 | None | ERR4818926 | HR-TB | lineage4.6.2.2 | gb | ERR4818465 | Other | lineage3 | gb | ERR4818471 | Other | lineage2.2.1 | None | ERR4818538 | Other | lineage3 | gb | ERR2509885 | RR-TB | lineage3 | None | ERR4818548 | Other | lineage4.3.3 | None | SRR5007161 | RR-TB | lineage4.1.1.3.1 | None | ERR4818580 | Other | lineage4.7 | None | SRR5007163 | MDR-TB | lineage4;lineage3 | None | SRR5007165 | MDR-TB | lineage3 | None | ERR2513298 | Other | lineage4.8 | gb | SRR5007168 | RR-TB | lineage4.9 | None | SRR5007171 | Other | lineage2.2.1 | None | SRR5007167 | RR-TB | lineage4.1.1.3.1 | None | SRR5007169 | RR-TB | lineage4.8.2 | None | SRR5007170 | RR-TB | lineage4.9 | None | SRR5007180 | Other | None | SRR5007178 | Pre-XDR-TB | lineage4.1.1.3.1 | None | SRR5007174 | Other | lineage4.3.4.1 | None | ERR4817540 | Other | lineage4.3.4.2 | None | ERR4817569 | Other | lineage4.3.4.1 | None | ERR4817547 | Other | lineage4.2.2.1 | None | ERR4817551 | Other | lineage4.9 | None | ERR4817555 | RR-TB | lineage3 | None | SRR5007190 | HR-TB | lineage3 | None | SRR5007203 | Other | lineage2.2.1 | None | ERR4817584 | MDR-TB | lineage3 | None | ERR4818964 | Other | lineage1.2.1.2.1 | None | ERR2513348 | Other | lineage3 | None | ERR4819119 | HR-TB | lineage1.2.1.2.1 | gb | ERR2446154 | Sensitive | lineage4.4.1.1 | nl | ERR4818629 | Other | lineage4.3.3;lineage3 | gb | ERR2512941 | Other | lineage1.1.2 | None | ERR4818637 | Other | lineage4.8 | None | ERR4819131 | Other | lineage4 | None | ERR2513681 | Other | lineage1.1.2 | None | ERR4820711 | HR-TB | lineage4.1.2 | None | SRR5266540 | MDR-TB | lineage4.3.3 | ru | ERR2513837 | Other | lineage4.1.2.1 | gb | ERR4820256 | Other | lineage2.2.1 | None | ERR4819217 | Other | lineage1.2.2.2 | None | ERR4819154 | Sensitive | lineage4.1.1.3 | None | ERR4820242 | Other | lineage1.2.2.1 | None | ERR4820247 | HR-TB | lineage4.9 | None | ERR4819192 | Other | lineage3 | None | ERR4819211 | Other | lineage4.7 | None | ERR4819224 | Other | lineage1.2.1.2.1 | None | ERR4820270 | MDR-TB | lineage4.8 | gb | ERR4819262 | Other | lineage4.1.2.1 | None | ERR4819347 | Other | lineage4.1.2.1 | None | ERR4819307 | RR-TB | lineage4 | None | ERR2513924 | RR-TB | lineage4.8 | None | ERR4819334 | Other | lineage4.2.2.2 | gb | ERR4819265 | HR-TB | lineage4.3.4.1 | None | ERR2513904 | Other | lineage3.1.2.2 | gb | ERR2513949 | Other | lineage3 | gb | ERR2514073 | Other | lineage4.1.1.3.1 | None | ERR4820318 | Other | lineage4.2.2 | None | ERR4819377 | Other | lineage4;lineage3.1.2.1 | None | ERR4820335 | Other | lineage4.1.2.1 | None | ERR4820332 | Other | lineage2.2.1 | None | ERR3275615 | Sensitive | lineage4.4.1.1 | nl | ERR4820328 | Other | lineage3 | gb | ERR2514137 | Pre-XDR-TB | lineage2.2.1 | None | ERR4820324 | Other | lineage4 | None | ERR4819513 | Other | lineage4.3.2 | None | ERR4819456 | Other | lineage4.8 | None | ERR2514173 | Other | lineage4.5 | gb | ERR4820742 | Other | lineage4.3.4.2.1 | None | ERR4820348 | Other | lineage4.1.2.1 | None | ERR4819491 | Other | lineage4.1.2.1 | None | ERR2514277 | Sensitive | lineage4.1.2.1 | None | ERR2514261 | Other | lineage3 | None | ERR4819640 | RR-TB | lineage4.6.2.2 | None | ERR4820746 | RR-TB | lineage3 | None | ERR4820367 | Sensitive | lineage3.1.1 | None | ERR4819555 | Other | lineage4.8 | None | ERR4820404 | Other | lineage4.3.2 | None | ERR4820410 | Pre-XDR-TB | lineage3.1.1 | None | ERR4819641 | HR-TB | lineage4.6.2.2 | None | ERR2514409 | Sensitive | lineage3 | gb | ERR4819553 | Other | lineage4.1.4 | None | ERR4820397 | Other | lineage4.9 | None | ERR4819592 | Other | lineage4.7 | gb | ERR2514345 | Other | lineage4.8 | gb | ERR4819622 | Other | lineage4.1.2.1 | None | ERR4820416 | Other | lineage4.1.2.1 | None | SRR5266536 | MDR-TB | lineage2.2.1 | ru | ERR4819679 | Other | lineage3 | None | ERR4820864 | Other | lineage4.9;lineage4.8 | None | ERR2514488 | Sensitive | lineage4.8 | gb | ERR4820467 | Other | lineage4.8 | gb | ERR4819699 | HR-TB | lineage4.6.2.2 | gb | ERR4819723 | Other | None | ERR4820787 | Other | lineage3.1.1 | gb | ERR4819772 | RR-TB | lineage1.1.3.1 | None | ERR4819734 | RR-TB | lineage3 | gb | ERR4819766 | Other | lineage4.4.1.1 | None | ERR4820801 | Other | lineage1.2.2 | None | ERR2514673 | Other | lineage4.1.2.1 | gb | ERR4819834 | Other | lineage4.8 | gb | ERR4819864 | RR-TB | lineage1.1.3.1 | None | ERR4820862 | Other | lineage2.2.1.1 | None | ERR4820517 | Other | lineage3 | None | ERR4820543 | Other | La3 | None | ERR4820889 | Other | lineage3 | gb | ERR2514848 | HR-TB | lineage2.2.1 | gb | ERR2517074 | Pre-XDR-TB | lineage3 | gb | ERR4819948 | Other | lineage4.4.1.1 | None | ERR2514896 | Other | lineage3 | gb | ERR4820572 | Other | lineage1.2.1.2.1 | None | ERR4820001 | Other | lineage4.8 | gb | ERR4819980 | Other | lineage4.1.2.1 | None | ERR4819999 | Sensitive | lineage4.8 | gb | ERR2515032 | Other | lineage3 | None | ERR4820880 | Other | lineage4.2.2.2 | gb | ERR2515022 | Sensitive | lineage3 | None | ERR4820622 | Other | lineage4.3.4.2 | None | ERR4820833 | HR-TB | None | ERR4820188 | Other | lineage3 | gb | ERR4820060 | Other | lineage4.3.3 | None | ERR4820076 | Other | lineage1.1.1 | gb | ERR4820100 | Other | lineage4.3.3 | None | ERR4820151 | RR-TB | lineage4.8 | None | ERR4820187 | Other | lineage4.3.3 | None | ERR4820162 | Other | lineage4.1.1.3 | None | ERR4820048 | Sensitive | lineage4.1.1.3 | None | ERR4820092 | Other | lineage3 | None | ERR4820666 | Other | lineage4.8 | gb | ERR4820679 | Other | lineage4.8 | None | ERR4820690 | Other | lineage4.1.1 | gb | ERR4820907 | Other | lineage4.1.2.1 | gb | ERR4821769 | Other | lineage4.1.2.1 | None | ERR4820918 | Other | lineage4.9 | None | SRR6045424 | Other | lineage1.1.2 | None | ERR4820922 | Other | lineage4.1.2.1 | gb | ERR4821030 | Other | lineage4.8 | None | ERR4821791 | HR-TB | lineage4.1.2.1 | None | ERR4821796 | Other | lineage4.1.1 | None | ERR4820967 | HR-TB | None | ERR4821817 | Other | lineage4.9 | None | SRR6045422 | Other | lineage4.3.1.1 | None | ERR4821812 | Other | lineage4.8 | gb | ERR4821051 | Other | lineage1.2.1.2.1 | None | SRR6045445 | Other | lineage4.3.1.1 | None | SRR6046087 | Other | None | SRR6045537 | Pre-XDR-TB | lineage2.2.1 | None | SRR6045464 | Other | lineage4.1.1.3 | None | SRR6046096 | Other | lineage4.1.2.1 | None | SRR6045485 | Other | lineage4.9 | None | ERR4821865 | Other | lineage2.2.1 | gb | SRR6046089 | Other | lineage4.1.2.1 | None | SRR6045496 | Other | lineage6.1.3 | None | SRR6045516 | Other | lineage3.1.1 | None | SRR6045553 | RR-TB | lineage4.9 | None | ERR2660499 | Sensitive | lineage4.1.1.3 | None | SRR6046117 | RR-TB | lineage4.9 | None | SRR6045547 | Sensitive | lineage4.9;lineage3.1.2 | gb | ERR2660505 | Other | lineage1.2.2.1 | None | ERR4821179 | Other | lineage4.1.2.1 | gb | ERR4821245 | Other | lineage4.1.2.1 | None | ERR4821894 | Other | lineage4 | gb | ERR4821908 | Other | lineage4.8 | None | ERR4821222 | Other | lineage4.3.2.1 | None | ERR4821214 | RR-TB | None | ERR4821232 | HR-TB | lineage4.8 | gb | ERR4821953 | Other | lineage4.7 | gb | ERR4821243 | Other | lineage4.3.3 | gb | ERR4821331 | HR-TB | lineage4.8 | None | ERR4821263 | Other | lineage4.1.3 | gb | ERR4821273 | Other | lineage4.6.2.2 | None | ERR4821288 | Other | lineage4.7 | None | ERR4821310 | Other | lineage5 | None | ERR4822021 | Other | lineage4.8 | gb | ERR4821334 | RR-TB | lineage4.1.3 | None | ERR4822032 | Other | lineage2.2.1 | gb | ERR4822150 | Other | lineage4.8 | gb | ERR4822044 | Other | lineage3 | gb | ERR4821372 | Other | lineage4.1.2.1 | None | ERR4822105 | Other | lineage4.1 | None | ERR4821466 | Sensitive | lineage4.6 | gb | ERR4822066 | HR-TB | lineage4.1.2.1 | None | ERR4822104 | RR-TB | lineage3 | None | ERR4821477 | Other | lineage4.8 | None | ERR4821761 | Other | lineage3 | gb | ERR4821530 | HR-TB | lineage4.3.4.1 | None | ERR4822170 | Other | lineage4.1.1.3 | None | ERR4822190 | Other | lineage1.1.3.1 | gb | ERR4821583 | Sensitive | lineage4.1.2.1 | None | ERR4821610 | Other | lineage4.3.2 | None | ERR4822253 | Sensitive | lineage1.1.2 | None | ERR4822261 | RR-TB | lineage2.2.1 | None | ERR4821679 | Other | lineage4.3.3 | None | ERR4821704 | MDR-TB | lineage4.3.3 | None | ERR4821538 | Other | lineage3 | None | ERR4822173 | Other | lineage4.7 | None | ERR4821568 | Other | lineage4.3.4.2.1 | None | ERR4822208 | HR-TB | lineage4.1.2.1 | gb | ERR4822224 | HR-TB | lineage4.2.1 | None | ERR4822270 | MDR-TB | lineage4.2.2.1 | None | SRR5709926 | MDR-TB | lineage2.2.1 | None | ERR4821773 | Other | La1.6 | None | SRR6045591 | Other | lineage4.1.2.1 | None | SRR6045565 | Other | lineage4.6.2.2 | None | SRR6045599 | Other | lineage4.8 | None | SRR6045603 | RR-TB | lineage4.1.1.3 | None | SRR6045614 | Other | lineage4.8 | None | SRR6045613 | Other | lineage3.1.3 | None | SRR6045705 | Other | lineage4.9 | None | SRR6045621 | Other | lineage4.1.1.3 | None | SRR6045664 | Other | lineage4.2.1 | None | SRR6045683 | Other | lineage3.1.2 | None | SRR6045618 | Other | lineage3.1.2 | None | SRR5818586 | RR-TB | lineage4.2.2.2 | None | SRR6045726 | Other | lineage3 | None | SRR6045743 | Other | lineage3 | None | SRR6045749 | Other | lineage4.1.1 | gb | SRR6046152 | Other | lineage4.9 | None | SRR6046210 | Other | lineage4 | None | SRR5818666 | Other | lineage3 | None | SRR6045778 | Other | lineage3.1 | None | SRR6045793 | HR-TB | lineage3.1.1 | None | SRR6045797 | Other | lineage4.1.1.2 | gb | SRR6045833 | Other | lineage3.1 | gb | SRR6045763 | Pre-XDR-TB | lineage2.2.1 | None | SRR5818610 | Other | lineage3 | None | SRR5818612 | Other | lineage4.2.2.2 | None | SRR5818644 | Sensitive | lineage4.2.2.2 | dj | SRR6045805 | Other | lineage4.3.1.1 | None | SRR5818665 | Other | lineage4.6.5 | dj | SRR5818670 | Other | lineage4.1.2.1 | None | SRR6045894 | Other | lineage4.8 | None | SRR5818672 | Other | lineage1.2.2.2 | None | SRR5818694 | RR-TB | lineage4.2.2.2;lineage3 | None | SRR6045843 | Other | lineage4.2.2.2 | None | SRR6045876 | Other | lineage3 | gb | SRR5818685 | Sensitive | None | SRR6045855 | Sensitive | lineage3 | None | SRR6044841 | Other | lineage4.9 | None | SRR6044838 | Other | lineage4.9 | None | SRR6044784 | MDR-TB | lineage3 | None | SRR6044817 | Other | lineage3 | None | SRR6045925 | Other | lineage4.2 | None | SRR6044857 | Other | lineage4.8.1 | gb | SRR6045909 | Other | lineage4.8 | None | SRR6044873 | Other | lineage4.1.1.3.1 | None | SRR6045928 | Other | lineage4.9 | None | SRR6044888 | Other | lineage4.1.1.3.1 | None | SRR6044893 | Sensitive | lineage2.2.1 | gb | SRR6045920 | Other | lineage4.1.1 | gb | SRR6045944 | Other | lineage4.1.2.1 | None | SRR6044904 | Other | lineage3 | None | SRR6044958 | Other | lineage4.4.1.1 | None | SRR6044936 | Other | lineage4 | None | SRR6045957 | Other | lineage4.9 | None | SRR6045017 | Other | lineage3.1.2.2 | None | SRR6044993 | Other | lineage3 | None | SRR6045952 | HR-TB | None | SRR6045022 | Other | lineage3.1.1 | None | SRR6044983 | Other | lineage3.1.1 | None | SRR6045052 | HR-TB | lineage4.2.1.1 | None | SRR6045024 | Other | lineage4.1.1.2 | None | SRR6045045 | Other | lineage2.2.1 | None | SRR6046159 | Other | lineage4.8.2 | None | SRR6045056 | Other | lineage2.2.1 | gb | SRR6045071 | Other | lineage4.3.1.1 | None | SRR6045958 | Other | lineage3 | gb | SRR6045072 | Sensitive | lineage4.2.2.2 | gb | SRR6045124 | Other | lineage4.9 | None | SRR6045986 | Other | lineage3 | None | SRR6045164 | Other | lineage4.1.2.1 | None | SRR6045999 | Sensitive | lineage4.8.2 | gb | SRR6046011 | Sensitive | lineage4.3.1.1 | gb | SRR6045110 | Other | lineage3 | None | SRR6045125 | Other | lineage1.1.2 | None | SRR6045992 | Other | lineage3 | None | SRR6045138 | Other | lineage3.1.1 | None | SRR6045158 | Other | lineage4.9 | None | SRR6045159 | Other | lineage3.1.1 | None | SRR6046016 | Other | lineage4.3.1.1 | gb | SRR6046177 | Other | lineage3.1.2 | None | SRR6045163 | Other | lineage2.2.1 | None | SRR6046197 | Other | lineage4.3.3 | None | SRR6046020 | Other | lineage3 | None | SRR6046034 | Sensitive | lineage1.2.2.2 | gb | SRR6045222 | Other | lineage4.1.2.1 | None | SRR6045178 | Other | lineage3 | None | SRR6046189 | Other | lineage4.8 | None | SRR6045199 | Other | lineage2.2.1 | None | SRR6045232 | Other | lineage4.1.1.3 | gb | SRR6045248 | Other | lineage3.1.1 | None | SRR6045243 | Sensitive | lineage4.1.1 | gb | SRR6045233 | HR-TB | None | SRR6045261 | Other | lineage1.1.2 | gb | SRR6045267 | RR-TB | lineage4 | None | SRR6045295 | Other | lineage4.7 | None | SRR6045288 | Other | lineage3 | gb | SRR6045289 | Other | None | SRR6045358 | Sensitive | lineage4.9 | None | SRR6045312 | Other | lineage1.1.3.3 | None | SRR1735629 | Other | lineage1.2.2.2 | gb | SRR6045384 | Other | lineage4.1.2 | None | SRR6045376 | HR-TB | lineage4.1.2.1 | gb | SRR6045396 | Other | lineage4.3.1.1 | None | SRR6046219 | Other | lineage4.8;lineage3 | gb | SRR6046239 | Other | lineage4.9;lineage3 | None | SRR6046275 | Other | lineage3.1.1 | None | SRR6046246 | Other | lineage3 | None | SRR6046359 | Other | lineage4.7 | None | SRR6046291 | Other | lineage3 | None | SRR6046288 | Other | lineage3 | gb | SRR6046273 | Other | lineage3.1.2 | None | SRR6046391 | Other | lineage4.1.1.3 | gb | SRR6046343 | Other | lineage2.2.1 | None | SRR6046384 | Other | lineage4.3.1.1 | gb | ERR2851359 | Other | lineage4.9 | None | SRR6046398 | Other | lineage4.1.1.3.1 | gb | ERR2851354 | RR-TB | lineage4.9 | None | ERR4829208 | RR-TB | lineage4.8 | None | ERR4829222 | Sensitive | lineage4.1.2.1 | None | ERR4828849 | Sensitive | lineage4.3.2 | None | SRR6046457 | Other | lineage3 | gb | SRR6046440 | Other | lineage3.1.2.2 | None | SRR6046586 | Other | lineage4.1.1.3 | gb | SRR6046456 | Other | lineage4.1.1.3.1 | None | SRR6046463 | Other | lineage4.4.1.1 | None | SRR6046482 | HR-TB | None | SRR6046521 | Other | lineage4.4.1.1 | None | SRR6046541 | Other | lineage4.9 | None | SRR6046481 | Other | lineage4.1.1.3.1 | None | SRR6046484 | Other | lineage1.2.2.2 | None | SRR6046517 | Other | lineage4.8 | None | SRR6046534 | Other | lineage1.1.2 | None | SRR6046607 | Other | lineage3 | None | SRR6046612 | Other | lineage1.1.1.1 | None | SRR6046616 | Other | lineage4.3.1.1 | None | SRR6046602 | HR-TB | lineage4.1.2.1 | gb | SRR6046641 | Other | lineage4.8 | None | SRR6046646 | Other | lineage4.7 | gb | SRR6046645 | Sensitive | lineage4.3.3 | gb | SRR6046655 | Other | lineage4.1.2.1 | None | SRR6046668 | Sensitive | lineage1.1.2 | gb | SRR6046701 | Other | lineage3.1.2.2 | None | SRR6046710 | Other | lineage4.8.2 | None | SRR6046739 | Other | lineage1.1.2 | None | SRR6046729 | Other | None | SRR6046761 | Other | lineage3 | gb | SRR6046815 | Other | lineage3 | None | SRR6046790 | Other | lineage4.7 | None | SRR6046764 | Other | lineage4.2.2 | None | SRR6046766 | Other | lineage3.1.1 | None | SRR6046802 | Other | lineage4 | None | SRR6046818 | Other | lineage4.2.1 | gb | SRR6046848 | Other | lineage4.6.5 | None | SRR6511600 | MDR-TB | lineage4.3.4.2 | None | SRR6046852 | MDR-TB | lineage3 | None | SRR6046824 | HR-TB | None | ERR2886463 | Sensitive | lineage2.2.1 | None | ERR3148546 | Other | lineage4.3.2 | None | SRR6896336 | Sensitive | lineage2.2.1 | None | ERR4863405 | Pre-XDR-TB | lineage4.1.2.1;lineage2.2.1 | None | SRR6785282 | Other | lineage4.3.3 | None | SRR6896535 | Other | lineage4.1.1.3 | None | SRR9971246 | MDR-TB | lineage4.1.1.3 | None | SRR6824324 | Other | lineage4.5 | None | SRR6855828 | Other | lineage4.3.2.1 | None | SRR6982391 | Other | lineage4.1.2.1 | None | SRR6855774 | Other | lineage2.2.1 | None | SRR7131026 | Other | lineage2.2.1 | None | SRR7131004 | Other | lineage4.6.2.2 | None | SRR7131031 | Other | lineage4.2.2.2 | None | SRR7131030 | Other | lineage4.1.2.1 | None | SRR7131028 | Other | lineage4.8 | None | SRR7131146 | Sensitive | lineage4.6.2.2 | None | SRR7131098 | MDR-TB | lineage4.3.3 | None | SRR7131123 | Other | lineage4.8 | None | SRR7131068 | Other | lineage4.8 | None | SRR7131122 | Other | lineage2.2.1 | None | SRR7131169 | Other | lineage4.1.2.1 | None | SRR7131163 | Other | lineage2.2.1 | None | SRR7131195 | Other | lineage2.2.1 | None | SRR7131182 | Other | lineage4.1.2.1 | None | SRR7131233 | MDR-TB | lineage4.3.3 | None | SRR7131198 | Other | lineage4.3.3 | None | SRR7131201 | Other | lineage4.8 | None | SRR8217893 | HR-TB | lineage2.2.1 | None | SRR7131251 | Other | lineage2.2.1 | None | SRR7131236 | Other | lineage4.3.4.2 | None | SRR7131257 | Other | lineage6.3.1 | None | SRR8651633 | Pre-XDR-TB | lineage4.4.2 | None | SRR9971351 | RR-TB | lineage2.2.1 | None | SRR9971369 | MDR-TB | lineage4.1.1.3 | None | SRR8600217 | Other | La1.8.1 | None | SRR9971052 | MDR-TB | lineage4.4.1.1 | None | SRR7131287 | Other | lineage2.2.1.1 | None | SRR8600127 | Other | La1.8.1 | None | SRR9971051 | Pre-XDR-TB | lineage4.3.3 | None | SRR8651662 | Pre-XDR-TB | lineage2.2.1 | None | ERR10796558 | Sensitive | lineage4 | None | ERR10219876 | Other | lineage4.3.4.2 | None | SRR9971147 | RR-TB | lineage2.2.1 | None | SRR7765062 | Pre-XDR-TB | lineage4.1.2.1 | None | DRR188816 | Sensitive | lineage4.2.2 | None | ERR10219868 | Other | lineage4.1.2.1 | None | ERR10796561 | Other | lineage4.3.2 | None | ERR10796562 | Other | lineage4.3.4.1 | None | ERR10796564 | Other | lineage4.3.3 | None | ERR10796563 | Other | lineage4.3.3 | None | ERR10796578 | Other | lineage2.2.1 | None | ERR10796572 | Other | lineage4.3.4.1 | None | ERR10796618 | Other | lineage4.3.4.1 | None | ERR10796595 | Other | lineage4.9 | None | ERR10796599 | Other | lineage4 | None | ERR10796615 | Other | lineage4 | None | ERR10796580 | RR-TB | lineage4.6 | None | ERR10796594 | Other | lineage4.9 | None | ERR3261351 | Other | lineage4.9 | None | ERR10796620 | Other | lineage4.1.1 | None | ERR10796627 | Other | lineage4 | None | ERR10796633 | RR-TB | lineage4.3.4 | None | ERR10796635 | Other | lineage4 | None | ERR3261359 | Other | lineage4.9 | None | ERR3261389 | Other | lineage4.9 | None |
---|