TB-Profiler result

Run: SRR6045158
Summary

Run ID: SRR6045158

Sample name:

Date: 04-04-2023 11:53:40

Number of reads: 27996

Percentage reads mapped: 1.06

Strain: lineage4.9

Drug-resistance: Other

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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
lineage4 Euro-American LAM;T;S;X;H None 1.0
lineage4.9 Euro-American (H37Rv-like) T1 None 1.0
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
rrs 1472733 n.888G>A non_coding_transcript_exon_variant 1.0 streptomycin
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
gyrB 6133 c.894G>C synonymous_variant 1.0
gyrB 6148 c.909C>G synonymous_variant 1.0
gyrB 6242 p.Arg335Lys missense_variant 1.0
gyrB 6250 c.1011A>G synonymous_variant 1.0
gyrB 6253 c.1014G>C synonymous_variant 1.0
gyrB 6268 c.1029C>G synonymous_variant 1.0
gyrB 6271 c.1032C>T synonymous_variant 1.0
gyrB 6274 c.1035C>G synonymous_variant 1.0
gyrB 6280 c.1041T>C synonymous_variant 1.0
gyrA 7066 c.-236G>T upstream_gene_variant 0.5
gyrA 7078 c.-224A>C upstream_gene_variant 0.8
gyrA 7081 c.-221T>C upstream_gene_variant 0.83
gyrA 7084 c.-218A>G upstream_gene_variant 0.83
gyrA 7093 c.-209T>C upstream_gene_variant 0.88
gyrA 7099 c.-203G>A upstream_gene_variant 0.88
gyrA 7100 c.-202T>C upstream_gene_variant 0.88
gyrA 7123 c.-179C>A upstream_gene_variant 1.0
gyrA 7129 c.-173T>G upstream_gene_variant 1.0
gyrA 7132 c.-170T>G upstream_gene_variant 1.0
gyrB 7210 p.Asp657Glu missense_variant 1.0
gyrA 7213 c.-89G>A upstream_gene_variant 1.0
gyrA 7225 c.-77T>C upstream_gene_variant 1.0
gyrA 7745 c.444G>A synonymous_variant 1.0
gyrA 7754 p.Asp151Glu missense_variant 1.0
gyrA 7763 c.462T>C synonymous_variant 1.0
gyrA 7832 c.531G>T synonymous_variant 1.0
gyrA 7835 c.534A>G synonymous_variant 1.0
gyrA 7841 c.540C>T synonymous_variant 1.0
gyrA 7847 c.546G>C synonymous_variant 1.0
gyrA 7859 c.558A>C synonymous_variant 1.0
gyrA 7865 c.564T>C synonymous_variant 1.0
gyrA 7886 c.585T>G synonymous_variant 1.0
gyrA 8156 c.855T>C synonymous_variant 1.0
gyrA 8168 c.867A>G synonymous_variant 1.0
gyrA 8294 c.993T>C synonymous_variant 1.0
gyrA 8324 c.1023T>C synonymous_variant 1.0
gyrA 9704 c.2403T>C synonymous_variant 1.0
gyrA 9707 c.2406G>C synonymous_variant 1.0
gyrA 9716 c.2415T>C synonymous_variant 1.0
gyrA 9737 c.2436_2437insA frameshift_variant 1.0
ccsA 620694 c.804C>G synonymous_variant 1.0
ccsA 620698 p.Val270Ile missense_variant 1.0
rpoB 759616 c.-191C>T upstream_gene_variant 1.0
rpoB 760130 p.Asp108Glu missense_variant 1.0
rpoB 760139 c.333A>T synonymous_variant 1.0
rpoB 760142 c.336C>G synonymous_variant 1.0
rpoB 760184 c.378A>G synonymous_variant 1.0
rpoB 760196 c.390C>G synonymous_variant 1.0
rpoB 760235 c.429T>C synonymous_variant 1.0
rpoB 760244 c.438G>C synonymous_variant 1.0
rpoB 760256 c.450C>T synonymous_variant 1.0
rpoB 760283 c.477G>C synonymous_variant 1.0
rpoB 760298 c.492G>C synonymous_variant 1.0
rpoB 761948 c.2142G>C synonymous_variant 1.0
rpoB 761954 c.2148C>G synonymous_variant 1.0
rpoB 761972 c.2166C>T synonymous_variant 1.0
rpoB 762038 c.2232C>T synonymous_variant 1.0
rpoB 762047 c.2241G>A synonymous_variant 1.0
rpoB 762879 p.Met1025Leu missense_variant 1.0
rpoC 762917 c.-453C>T upstream_gene_variant 1.0
rpoC 762962 c.-408C>T upstream_gene_variant 1.0
rpoB 762968 p.Lys1054Asn missense_variant 1.0
rpoC 762989 c.-381G>A upstream_gene_variant 1.0
rpoC 762995 c.-375G>T upstream_gene_variant 1.0
rpoC 763004 c.-366G>A upstream_gene_variant 1.0
rpoC 763007 c.-363C>T upstream_gene_variant 1.0
rpoC 763109 c.-261C>G upstream_gene_variant 1.0
rpoC 763115 c.-255T>C upstream_gene_variant 1.0
rpoC 763166 c.-204A>G upstream_gene_variant 1.0
rpoC 763169 c.-201A>G upstream_gene_variant 1.0
rpoC 763193 c.-177C>T upstream_gene_variant 1.0
rpoC 763202 c.-168A>C upstream_gene_variant 1.0
rpoC 763205 c.-165G>C upstream_gene_variant 1.0
rpoC 763375 c.6C>A synonymous_variant 1.0
rpoC 763408 c.39T>C synonymous_variant 1.0
rpoC 763528 c.159G>A synonymous_variant 1.0
rpoC 763546 c.177A>G synonymous_variant 1.0
rpoC 763570 c.201G>T synonymous_variant 1.0
rpoC 763573 c.204G>C synonymous_variant 1.0
rpoC 763594 c.225C>T synonymous_variant 1.0
rpoC 763675 c.306C>G synonymous_variant 1.0
rpoC 763699 c.330G>T synonymous_variant 1.0
rpoC 763702 c.333C>G synonymous_variant 1.0
rpoC 763709 c.340C>T synonymous_variant 1.0
rpoC 763714 c.345G>C synonymous_variant 1.0
rpoC 763717 c.348T>C synonymous_variant 1.0
rpoC 763723 c.354G>C synonymous_variant 1.0
rpoC 763741 c.372C>T synonymous_variant 1.0
rpoC 763747 c.378G>A synonymous_variant 1.0
rpoC 763765 c.396T>G synonymous_variant 1.0
rpoC 764458 c.1089G>C synonymous_variant 1.0
rpoC 764461 c.1092A>G synonymous_variant 1.0
rpoC 764485 c.1116G>C synonymous_variant 1.0
rpoC 764491 c.1122G>T synonymous_variant 1.0
rpoC 764758 c.1389C>G synonymous_variant 1.0
rpoC 764764 c.1395T>C synonymous_variant 1.0
rpoC 764827 c.1458G>C synonymous_variant 1.0
rpoC 764858 c.1489T>C synonymous_variant 1.0
rpoC 764869 c.1500C>T synonymous_variant 1.0
rpoC 764968 c.1599T>C synonymous_variant 1.0
rpoC 765404 p.Leu679Lys missense_variant 1.0
rpoC 765409 c.2040T>C synonymous_variant 1.0
rpoC 765412 c.2043T>C synonymous_variant 1.0
rpoC 765425 p.Lys686Glu missense_variant 1.0
rpoC 765445 c.2076G>C synonymous_variant 1.0
rpoC 765452 p.Ala695Arg missense_variant 1.0
rpoC 765466 c.2097C>T synonymous_variant 1.0
rpoC 765871 c.2502T>C synonymous_variant 1.0
rpoC 765875 p.Val836Ile missense_variant 1.0
rpoC 765886 c.2517C>G synonymous_variant 1.0
rpoC 765904 c.2535C>G synonymous_variant 1.0
rpoC 765908 c.2539C>T synonymous_variant 1.0
rpoC 765934 c.2565C>T synonymous_variant 1.0
rpoC 765940 c.2571A>T synonymous_variant 1.0
rpoC 765946 c.2577C>T synonymous_variant 1.0
rpoC 765947 c.2578T>C synonymous_variant 1.0
rpoC 765952 c.2583G>C synonymous_variant 1.0
rpoC 765961 c.2592G>T synonymous_variant 1.0
rpoC 765962 c.2593T>C synonymous_variant 1.0
rpoC 765967 c.2598C>T synonymous_variant 1.0
rpoC 765979 c.2610C>G synonymous_variant 1.0
rpoC 765982 c.2613C>T synonymous_variant 1.0
rpoC 765994 c.2625A>T synonymous_variant 1.0
rpoC 766456 c.3087C>G synonymous_variant 1.0
rpoC 766459 c.3090G>T synonymous_variant 1.0
rpoC 766469 c.3100C>T synonymous_variant 1.0
mmpL5 775895 c.2586C>A synonymous_variant 0.6
mmpL5 775904 c.2577G>A synonymous_variant 0.5
mmpL5 775909 p.Leu858Phe missense_variant 1.0
mmpL5 775915 p.Ala856Ser missense_variant 1.0
mmpL5 775916 c.2565T>C synonymous_variant 1.0
mmpL5 775943 c.2538C>G synonymous_variant 1.0
mmpL5 776100 p.Thr794Ile missense_variant 1.0
mmpL5 776107 c.2374C>T synonymous_variant 0.5
mmpL5 776129 c.2352C>G synonymous_variant 1.0
mmpL5 776132 p.Ala783Ser missense_variant 0.5
mmpL5 776135 p.Ser782Ala missense_variant 0.5
mmpL5 776377 p.Gln702Lys missense_variant 1.0
mmpL5 776396 p.Val695Ala missense_variant 1.0
mmpL5 776402 c.2079C>G synonymous_variant 1.0
mmpL5 776405 c.2076T>G synonymous_variant 1.0
mmpL5 776426 c.2055C>T synonymous_variant 1.0
mmpL5 776693 p.Val596Met missense_variant 1.0
mmpL5 776715 p.Lys589Pro missense_variant 1.0
mmpL5 776726 p.Phe585Leu missense_variant 0.5
mmpL5 776733 p.Ser583Asn missense_variant 1.0
mmpL5 776741 c.1740C>G synonymous_variant 0.86
mmpL5 776744 c.1737C>G synonymous_variant 1.0
mmpL5 776771 c.1710T>C synonymous_variant 1.0
mmpL5 776776 p.Asn569Asp missense_variant 1.0
mmpL5 776777 c.1704C>T synonymous_variant 1.0
mmpL5 777224 p.Asn419Lys missense_variant 1.0
mmpL5 777246 p.Arg412Lys missense_variant 1.0
mmpL5 777251 c.1230C>G synonymous_variant 1.0
mmpL5 777254 c.1227G>C synonymous_variant 1.0
mmpL5 777507 p.Ser325His missense_variant 1.0
mmpL5 777512 c.969T>C synonymous_variant 1.0
mmpL5 777518 c.963G>C synonymous_variant 1.0
fbiC 1303761 c.831T>C synonymous_variant 1.0
fbiC 1303770 c.840G>C synonymous_variant 1.0
fbiC 1303779 c.849G>A synonymous_variant 1.0
fbiC 1303785 c.855G>A synonymous_variant 1.0
fbiC 1303788 c.858T>C synonymous_variant 1.0
fbiC 1303789 p.Ile287Val missense_variant 1.0
fbiC 1303818 c.888C>G synonymous_variant 1.0
fbiC 1303827 p.Glu299Asp missense_variant 1.0
fbiC 1303836 c.906G>T synonymous_variant 1.0
atpE 1461188 c.144G>T synonymous_variant 1.0
atpE 1461197 c.153A>C synonymous_variant 1.0
atpE 1461219 c.175T>C synonymous_variant 1.0
atpE 1461224 c.180T>G synonymous_variant 1.0
atpE 1461230 c.186G>C synonymous_variant 1.0
atpE 1461233 c.189A>G synonymous_variant 1.0
atpE 1461251 c.207G>C synonymous_variant 0.67
rrs 1471896 n.51T>C non_coding_transcript_exon_variant 1.0
rrs 1471900 n.55C>T non_coding_transcript_exon_variant 1.0
rrs 1471911 n.66C>A non_coding_transcript_exon_variant 1.0
rrs 1471917 n.72G>C non_coding_transcript_exon_variant 1.0
rrs 1471934 n.89A>G non_coding_transcript_exon_variant 1.0
rrs 1471986 n.141C>T non_coding_transcript_exon_variant 1.0
rrs 1472019 n.174G>A non_coding_transcript_exon_variant 1.0
rrs 1472023 n.178G>T non_coding_transcript_exon_variant 1.0
rrs 1472106 n.261G>A non_coding_transcript_exon_variant 1.0
rrs 1472112 n.267C>T non_coding_transcript_exon_variant 1.0
rrs 1472113 n.268T>C non_coding_transcript_exon_variant 0.5
rrs 1472122 n.277G>T non_coding_transcript_exon_variant 0.5
rrs 1472123 n.278A>T non_coding_transcript_exon_variant 0.5
rrs 1472124 n.279C>T non_coding_transcript_exon_variant 0.5
rrs 1472137 n.292G>A non_coding_transcript_exon_variant 0.4
rrs 1472150 n.305T>A non_coding_transcript_exon_variant 1.0
rrs 1472151 n.306C>T non_coding_transcript_exon_variant 0.6
rrs 1472152 n.307C>T non_coding_transcript_exon_variant 0.25
rrs 1472172 n.327T>C non_coding_transcript_exon_variant 0.6
rrs 1472203 n.358G>A non_coding_transcript_exon_variant 0.62
rrs 1472210 n.365A>C non_coding_transcript_exon_variant 0.4
rrs 1472251 n.406G>A non_coding_transcript_exon_variant 1.0
rrs 1472339 n.494C>A non_coding_transcript_exon_variant 1.0
rrs 1472344 n.499C>T non_coding_transcript_exon_variant 1.0
rrs 1472380 n.535G>C non_coding_transcript_exon_variant 1.0
rrs 1472446 n.601T>A non_coding_transcript_exon_variant 1.0
rrs 1472452 n.607G>A non_coding_transcript_exon_variant 1.0
rrs 1472464 n.619A>G non_coding_transcript_exon_variant 1.0
rrs 1472494 n.649A>G non_coding_transcript_exon_variant 0.33
rrs 1472496 n.651T>A non_coding_transcript_exon_variant 0.27
rrs 1472498 n.653C>T non_coding_transcript_exon_variant 0.42
rrs 1472507 n.662C>G non_coding_transcript_exon_variant 0.29
rrs 1472517 n.672T>A non_coding_transcript_exon_variant 0.39
rrs 1472518 n.673G>T non_coding_transcript_exon_variant 0.44
rrs 1472530 n.685G>A non_coding_transcript_exon_variant 0.54
rrs 1472537 n.692C>T non_coding_transcript_exon_variant 0.63
rrs 1472544 n.699C>A non_coding_transcript_exon_variant 0.71
rrs 1472545 n.700A>T non_coding_transcript_exon_variant 0.71
rrs 1472566 n.721G>A non_coding_transcript_exon_variant 0.74
rrs 1472571 n.726G>C non_coding_transcript_exon_variant 0.85
rrs 1472579 n.734G>T non_coding_transcript_exon_variant 0.47
rrs 1472580 n.735C>T non_coding_transcript_exon_variant 0.32
rrs 1472581 n.736A>T non_coding_transcript_exon_variant 0.92
rrs 1472598 n.753A>C non_coding_transcript_exon_variant 0.67
rrs 1472599 n.754G>T non_coding_transcript_exon_variant 0.58
rrs 1472616 n.771G>A non_coding_transcript_exon_variant 0.74
rrs 1472655 n.810G>A non_coding_transcript_exon_variant 0.72
rrs 1472658 n.813G>A non_coding_transcript_exon_variant 0.58
rrs 1472661 n.816A>G non_coding_transcript_exon_variant 0.58
rrs 1472668 n.825_829delGGGTT non_coding_transcript_exon_variant 0.29
rrs 1472675 n.830_831insAGAC non_coding_transcript_exon_variant 0.29
rrs 1472680 n.835C>T non_coding_transcript_exon_variant 0.29
rrs 1472682 n.837T>C non_coding_transcript_exon_variant 0.29
rrs 1472683 n.838T>G non_coding_transcript_exon_variant 0.29
rrs 1472687 n.842A>T non_coding_transcript_exon_variant 0.29
rrs 1472689 n.844C>T non_coding_transcript_exon_variant 0.29
rrs 1472690 n.845C>A non_coding_transcript_exon_variant 0.29
rrs 1472713 n.868T>C non_coding_transcript_exon_variant 0.79
rrs 1472716 n.871C>T non_coding_transcript_exon_variant 0.88
rrs 1472742 n.897C>T non_coding_transcript_exon_variant 1.0
rrs 1472744 n.899A>G non_coding_transcript_exon_variant 0.94
rrs 1472781 n.936C>T non_coding_transcript_exon_variant 0.82
rrs 1472793 n.948A>T non_coding_transcript_exon_variant 0.66
rrs 1472803 n.958T>A non_coding_transcript_exon_variant 0.61
rrs 1472824 n.979T>A non_coding_transcript_exon_variant 0.33
rrs 1472828 n.983T>C non_coding_transcript_exon_variant 0.27
rrs 1472847 n.1002G>C non_coding_transcript_exon_variant 1.0
rrs 1472848 n.1003T>A non_coding_transcript_exon_variant 1.0
rrs 1472849 n.1004C>G non_coding_transcript_exon_variant 1.0
rrs 1472858 n.1013G>T non_coding_transcript_exon_variant 1.0
rrs 1472859 n.1014G>T non_coding_transcript_exon_variant 1.0
rrs 1472860 n.1015C>G non_coding_transcript_exon_variant 1.0
rrs 1472895 n.1050C>T non_coding_transcript_exon_variant 0.88
rrs 1472990 n.1145A>G non_coding_transcript_exon_variant 0.6
rrs 1473005 n.1160C>T non_coding_transcript_exon_variant 0.29
rrs 1473035 n.1190G>A non_coding_transcript_exon_variant 1.0
rrs 1473053 n.1208T>A non_coding_transcript_exon_variant 0.63
rrs 1473055 n.1210C>T non_coding_transcript_exon_variant 0.31
rrs 1473056 n.1211A>T non_coding_transcript_exon_variant 0.93
rrs 1473062 n.1217T>A non_coding_transcript_exon_variant 0.56
rrs 1473066 n.1221A>G non_coding_transcript_exon_variant 0.43
rrs 1473068 n.1223A>G non_coding_transcript_exon_variant 0.42
rrs 1473080 n.1235C>T non_coding_transcript_exon_variant 0.43
rrs 1473081 n.1236C>T non_coding_transcript_exon_variant 0.69
rrs 1473088 n.1243A>G non_coding_transcript_exon_variant 0.64
rrs 1473093 n.1248C>T non_coding_transcript_exon_variant 0.5
rrs 1473100 n.1255G>A non_coding_transcript_exon_variant 0.67
rrs 1473102 n.1257C>T non_coding_transcript_exon_variant 0.67
rrs 1473104 n.1259C>T non_coding_transcript_exon_variant 1.0
rrs 1473110 n.1265T>G non_coding_transcript_exon_variant 1.0
rrs 1473111 n.1266A>G non_coding_transcript_exon_variant 1.0
rrs 1473130 n.1285G>A non_coding_transcript_exon_variant 0.5
rrs 1473145 n.1300C>T non_coding_transcript_exon_variant 0.5
rrs 1473148 n.1303G>T non_coding_transcript_exon_variant 0.33
rrs 1473166 n.1321G>A non_coding_transcript_exon_variant 1.0
rrs 1473172 n.1327T>G non_coding_transcript_exon_variant 0.33
rrs 1473173 n.1328C>T non_coding_transcript_exon_variant 0.33
rrs 1473177 n.1332G>A non_coding_transcript_exon_variant 0.5
rrs 1473192 n.1347A>G non_coding_transcript_exon_variant 0.62
rrs 1473199 n.1356delA non_coding_transcript_exon_variant 0.67
rrs 1473205 n.1360T>C non_coding_transcript_exon_variant 0.62
rrs 1473226 n.1381C>T non_coding_transcript_exon_variant 0.29
rrs 1473248 n.1403G>A non_coding_transcript_exon_variant 0.29
rrs 1473276 n.1431A>G non_coding_transcript_exon_variant 1.0
rrs 1473290 n.1445C>T non_coding_transcript_exon_variant 1.0
rrs 1473291 n.1446_1447insT non_coding_transcript_exon_variant 1.0
rrs 1473301 n.1456T>C non_coding_transcript_exon_variant 1.0
rrs 1473316 n.1471C>A non_coding_transcript_exon_variant 0.86
rrs 1473318 n.1473G>A non_coding_transcript_exon_variant 0.57
rrs 1473319 n.1474C>T non_coding_transcript_exon_variant 0.57
rrs 1473327 n.1482A>G non_coding_transcript_exon_variant 0.62
rrs 1473328 n.1483C>T non_coding_transcript_exon_variant 0.62
rrs 1473352 n.1507C>T non_coding_transcript_exon_variant 0.64
rrl 1473397 n.-261A>G upstream_gene_variant 1.0
rrl 1473568 n.-90G>T upstream_gene_variant 1.0
rrl 1473569 n.-89A>T upstream_gene_variant 1.0
rrl 1473570 n.-88A>T upstream_gene_variant 1.0
rrl 1473571 n.-87C>G upstream_gene_variant 1.0
rrl 1473593 n.-65A>T upstream_gene_variant 1.0
rrl 1473746 n.89T>C non_coding_transcript_exon_variant 1.0
rrl 1473758 n.101G>T non_coding_transcript_exon_variant 1.0
rrl 1473770 n.113T>G non_coding_transcript_exon_variant 1.0
rrl 1473806 n.149C>T non_coding_transcript_exon_variant 1.0
rrl 1473811 n.154C>T non_coding_transcript_exon_variant 1.0
rrl 1473813 n.156C>T non_coding_transcript_exon_variant 1.0
rrl 1473823 n.166T>C non_coding_transcript_exon_variant 0.94
rrl 1473833 n.176G>A non_coding_transcript_exon_variant 1.0
rrl 1473876 n.219G>A non_coding_transcript_exon_variant 0.91
rrl 1473887 n.230T>A non_coding_transcript_exon_variant 0.87
rrl 1473888 n.231T>A non_coding_transcript_exon_variant 0.87
rrl 1473898 n.241C>T non_coding_transcript_exon_variant 1.0
rrl 1473899 n.242A>G non_coding_transcript_exon_variant 1.0
rrl 1473916 n.259C>A non_coding_transcript_exon_variant 1.0
rrl 1473922 n.265A>G non_coding_transcript_exon_variant 1.0
rrl 1473923 n.266C>G non_coding_transcript_exon_variant 1.0
rrl 1473924 n.267_268insT non_coding_transcript_exon_variant 1.0
rrl 1473935 n.278C>T non_coding_transcript_exon_variant 1.0
rrl 1473937 n.280C>T non_coding_transcript_exon_variant 1.0
rrl 1473943 n.286G>T non_coding_transcript_exon_variant 1.0
rrl 1473945 n.288T>A non_coding_transcript_exon_variant 1.0
rrl 1473946 n.289A>T non_coding_transcript_exon_variant 1.0
rrl 1474140 n.483C>T non_coding_transcript_exon_variant 1.0
rrl 1474151 n.494C>T non_coding_transcript_exon_variant 1.0
rrl 1474174 n.517A>G non_coding_transcript_exon_variant 0.47
rrl 1474181 n.524C>T non_coding_transcript_exon_variant 1.0
rrl 1474183 n.526T>C non_coding_transcript_exon_variant 0.47
rrl 1474184 n.527C>T non_coding_transcript_exon_variant 0.53
rrl 1474185 n.528G>A non_coding_transcript_exon_variant 0.5
rrl 1474186 n.529A>G non_coding_transcript_exon_variant 0.41
rrl 1474197 n.540C>T non_coding_transcript_exon_variant 0.52
rrl 1474199 n.542G>C non_coding_transcript_exon_variant 0.39
rrl 1474200 n.545delT non_coding_transcript_exon_variant 0.52
rrl 1474218 n.561T>A non_coding_transcript_exon_variant 0.44
rrl 1474228 n.571T>C non_coding_transcript_exon_variant 0.43
rrl 1474249 n.592G>T non_coding_transcript_exon_variant 0.92
rrl 1474252 n.595T>A non_coding_transcript_exon_variant 0.45
rrl 1474269 n.612C>T non_coding_transcript_exon_variant 0.31
rrl 1474275 n.618T>G non_coding_transcript_exon_variant 0.89
rrl 1474288 n.631C>T non_coding_transcript_exon_variant 0.5
rrl 1474446 n.789C>T non_coding_transcript_exon_variant 1.0
rrl 1474476 n.819C>T non_coding_transcript_exon_variant 0.5
rrl 1474488 n.831G>T non_coding_transcript_exon_variant 1.0
rrl 1474496 n.839C>T non_coding_transcript_exon_variant 1.0
rrl 1474497 n.840G>C non_coding_transcript_exon_variant 0.67
rrl 1474506 n.849C>G non_coding_transcript_exon_variant 0.5
rrl 1474507 n.850G>T non_coding_transcript_exon_variant 0.5
rrl 1474516 n.859C>A non_coding_transcript_exon_variant 0.5
rrl 1474529 n.872A>C non_coding_transcript_exon_variant 0.5
rrl 1474530 n.873G>A non_coding_transcript_exon_variant 0.5
rrl 1474537 n.880G>A non_coding_transcript_exon_variant 0.5
rrl 1474539 n.882C>T non_coding_transcript_exon_variant 0.5
rrl 1474540 n.883T>G non_coding_transcript_exon_variant 0.5
rrl 1474558 n.901G>A non_coding_transcript_exon_variant 0.6
rrl 1474627 n.970G>A non_coding_transcript_exon_variant 1.0
rrl 1474632 n.975G>T non_coding_transcript_exon_variant 1.0
rrl 1474636 n.979A>T non_coding_transcript_exon_variant 1.0
rrl 1474637 n.980C>T non_coding_transcript_exon_variant 1.0
rrl 1474638 n.981C>G non_coding_transcript_exon_variant 1.0
rrl 1474639 n.982G>C non_coding_transcript_exon_variant 1.0
rrl 1474709 n.1052G>A non_coding_transcript_exon_variant 1.0
rrl 1474734 n.1077G>T non_coding_transcript_exon_variant 1.0
rrl 1474740 n.1083G>T non_coding_transcript_exon_variant 0.5
rrl 1474747 n.1090C>G non_coding_transcript_exon_variant 1.0
rrl 1474749 n.1092C>T non_coding_transcript_exon_variant 0.67
rrl 1474753 n.1097delC non_coding_transcript_exon_variant 1.0
rrl 1474777 n.1120T>C non_coding_transcript_exon_variant 1.0
rrl 1474779 n.1122G>A non_coding_transcript_exon_variant 0.5
rrl 1474782 n.1125G>A non_coding_transcript_exon_variant 1.0
rrl 1474790 n.1133C>T non_coding_transcript_exon_variant 0.29
rrl 1474794 n.1137C>T non_coding_transcript_exon_variant 1.0
rrl 1474801 n.1144G>A non_coding_transcript_exon_variant 0.36
rrl 1474803 n.1146G>A non_coding_transcript_exon_variant 0.43
rrl 1474812 n.1155G>A non_coding_transcript_exon_variant 0.68
rrl 1474823 n.1166C>G non_coding_transcript_exon_variant 0.48
rrl 1474827 n.1170C>T non_coding_transcript_exon_variant 0.29
rrl 1474830 n.1173A>G non_coding_transcript_exon_variant 0.77
rrl 1474831 n.1174A>C non_coding_transcript_exon_variant 0.29
rrl 1474864 n.1207C>T non_coding_transcript_exon_variant 0.44
rrl 1474869 n.1212G>C non_coding_transcript_exon_variant 0.29
rrl 1474892 n.1235G>A non_coding_transcript_exon_variant 0.29
rrl 1474896 n.1239A>G non_coding_transcript_exon_variant 0.29
rrl 1474902 n.1245T>C non_coding_transcript_exon_variant 0.27
rrl 1474904 n.1247G>C non_coding_transcript_exon_variant 0.4
rrl 1474913 n.1256T>A non_coding_transcript_exon_variant 0.29
rrl 1474932 n.1275C>T non_coding_transcript_exon_variant 1.0
rrl 1475031 n.1374G>T non_coding_transcript_exon_variant 1.0
rrl 1475061 n.1404C>A non_coding_transcript_exon_variant 1.0
rrl 1475062 n.1405A>T non_coding_transcript_exon_variant 1.0
rrl 1475154 n.1497C>T non_coding_transcript_exon_variant 0.5
rrl 1475175 n.1518G>A non_coding_transcript_exon_variant 1.0
rrl 1475176 n.1519G>A non_coding_transcript_exon_variant 0.5
rrl 1475199 n.1542G>A non_coding_transcript_exon_variant 1.0
rrl 1475206 n.1549C>T non_coding_transcript_exon_variant 1.0
rrl 1475209 n.1552G>C non_coding_transcript_exon_variant 1.0
rrl 1475213 n.1556C>T non_coding_transcript_exon_variant 1.0
rrl 1475353 n.1696A>T non_coding_transcript_exon_variant 1.0
rrl 1475354 n.1697A>G non_coding_transcript_exon_variant 1.0
rrl 1475355 n.1698C>T non_coding_transcript_exon_variant 1.0
rrl 1475363 n.1706C>T non_coding_transcript_exon_variant 1.0
rrl 1475378 n.1721A>T non_coding_transcript_exon_variant 1.0
rrl 1475379 n.1722G>C non_coding_transcript_exon_variant 1.0
rrl 1475380 n.1723C>A non_coding_transcript_exon_variant 1.0
rrl 1475387 n.1730C>T non_coding_transcript_exon_variant 1.0
rrl 1475397 n.1740G>T non_coding_transcript_exon_variant 1.0
rrl 1475398 n.1741C>G non_coding_transcript_exon_variant 1.0
rrl 1475399 n.1742T>G non_coding_transcript_exon_variant 1.0
rrl 1475402 n.1745C>T non_coding_transcript_exon_variant 1.0
rrl 1475419 n.1762C>T non_coding_transcript_exon_variant 1.0
rrl 1475429 n.1772G>T non_coding_transcript_exon_variant 1.0
rrl 1475452 n.1795C>A non_coding_transcript_exon_variant 1.0
rrl 1475479 n.1822C>G non_coding_transcript_exon_variant 1.0
rrl 1475483 n.1826C>T non_coding_transcript_exon_variant 1.0
rrl 1475505 n.1848G>A non_coding_transcript_exon_variant 0.89
rrl 1475526 n.1869C>A non_coding_transcript_exon_variant 1.0
rrl 1475531 n.1874C>T non_coding_transcript_exon_variant 0.78
rrl 1475544 n.1887A>T non_coding_transcript_exon_variant 0.63
rrl 1475545 n.1888T>G non_coding_transcript_exon_variant 0.89
rrl 1475550 n.1893A>C non_coding_transcript_exon_variant 0.29
rrl 1475552 n.1895G>C non_coding_transcript_exon_variant 0.32
rrl 1475574 n.1917C>A non_coding_transcript_exon_variant 0.42
rrl 1475647 n.1990G>C non_coding_transcript_exon_variant 1.0
rrl 1475659 n.2002G>A non_coding_transcript_exon_variant 1.0
rrl 1475713 n.2056C>G non_coding_transcript_exon_variant 0.41
rrl 1475716 n.2059A>G non_coding_transcript_exon_variant 0.41
rrl 1475717 n.2060C>G non_coding_transcript_exon_variant 0.41
rrl 1475753 n.2096C>T non_coding_transcript_exon_variant 0.88
rrl 1475762 n.2105G>T non_coding_transcript_exon_variant 1.0
rrl 1475763 n.2106C>T non_coding_transcript_exon_variant 1.0
rrl 1475764 n.2107A>C non_coding_transcript_exon_variant 1.0
rrl 1475765 n.2108A>G non_coding_transcript_exon_variant 1.0
rrl 1475775 n.2118G>A non_coding_transcript_exon_variant 0.68
rrl 1475777 n.2120A>T non_coding_transcript_exon_variant 0.32
rrl 1475783 n.2126T>G non_coding_transcript_exon_variant 0.59
rrl 1475803 n.2146T>C non_coding_transcript_exon_variant 0.61
rrl 1475804 n.2147G>C non_coding_transcript_exon_variant 0.61
rrl 1475816 n.2159C>G non_coding_transcript_exon_variant 0.57
rrl 1475817 n.2160A>G non_coding_transcript_exon_variant 0.6
rrl 1475858 n.2201T>C non_coding_transcript_exon_variant 0.47
rrl 1475866 n.2209T>A non_coding_transcript_exon_variant 0.44
rrl 1475916 n.2259C>G non_coding_transcript_exon_variant 0.27
rrl 1475937 n.2280A>T non_coding_transcript_exon_variant 0.28
rrl 1475943 n.2286G>A non_coding_transcript_exon_variant 0.47
rrl 1475945 n.2288C>A non_coding_transcript_exon_variant 0.34
rrl 1475952 n.2295A>G non_coding_transcript_exon_variant 0.4
rrl 1475988 n.2331A>G non_coding_transcript_exon_variant 1.0
rrl 1475991 n.2334T>C non_coding_transcript_exon_variant 0.87
rrl 1475995 n.2338G>A non_coding_transcript_exon_variant 0.95
rrl 1476044 n.2387T>G non_coding_transcript_exon_variant 0.93
rrl 1476045 n.2388G>T non_coding_transcript_exon_variant 1.0
rrl 1476049 n.2392C>T non_coding_transcript_exon_variant 1.0
rrl 1476088 n.2431A>C non_coding_transcript_exon_variant 1.0
rrl 1476099 n.2442A>G non_coding_transcript_exon_variant 1.0
rrl 1476103 n.2446C>G non_coding_transcript_exon_variant 1.0
rrl 1476105 n.2448G>A non_coding_transcript_exon_variant 1.0
rrl 1476106 n.2449A>T non_coding_transcript_exon_variant 1.0
rrl 1476110 n.2453G>C non_coding_transcript_exon_variant 1.0
rrl 1476115 n.2458T>C non_coding_transcript_exon_variant 1.0
rrl 1476131 n.2474C>T non_coding_transcript_exon_variant 1.0
rrl 1476214 n.2557G>T non_coding_transcript_exon_variant 1.0
rrl 1476215 n.2558C>T non_coding_transcript_exon_variant 1.0
rrl 1476224 n.2567A>G non_coding_transcript_exon_variant 0.47
rrl 1476225 n.2568T>G non_coding_transcript_exon_variant 0.53
rrl 1476227 n.2570C>T non_coding_transcript_exon_variant 0.53
rrl 1476229 n.2572C>T non_coding_transcript_exon_variant 0.58
rrl 1476250 n.2593C>G non_coding_transcript_exon_variant 0.76
rrl 1476251 n.2594T>C non_coding_transcript_exon_variant 1.0
rrl 1476257 n.2600G>C non_coding_transcript_exon_variant 0.79
rrl 1476260 n.2603A>G non_coding_transcript_exon_variant 1.0
rrl 1476280 n.2623A>C non_coding_transcript_exon_variant 1.0
rrl 1476297 n.2640C>T non_coding_transcript_exon_variant 1.0
rrl 1476299 n.2642C>T non_coding_transcript_exon_variant 1.0
rrl 1476353 n.2696G>T non_coding_transcript_exon_variant 0.33
rrl 1476358 n.2701T>C non_coding_transcript_exon_variant 0.33
rrl 1476359 n.2702C>G non_coding_transcript_exon_variant 0.33
rrl 1476369 n.2712C>T non_coding_transcript_exon_variant 0.4
rrl 1476372 n.2715T>C non_coding_transcript_exon_variant 0.4
rrl 1476381 n.2724G>C non_coding_transcript_exon_variant 0.5
rrl 1476382 n.2725A>G non_coding_transcript_exon_variant 0.43
rrl 1476383 n.2726T>A non_coding_transcript_exon_variant 0.43
rrl 1476425 n.2768G>T non_coding_transcript_exon_variant 1.0
rrl 1476428 n.2771C>T non_coding_transcript_exon_variant 1.0
rrl 1476429 n.2772A>C non_coding_transcript_exon_variant 1.0
rrl 1476466 n.2809C>T non_coding_transcript_exon_variant 0.67
rrl 1476481 n.2824T>C non_coding_transcript_exon_variant 0.38
rrl 1476506 n.2849T>C non_coding_transcript_exon_variant 0.67
rrl 1476529 n.2872A>G non_coding_transcript_exon_variant 1.0
rrl 1476540 n.2883C>T non_coding_transcript_exon_variant 1.0
rrl 1476547 n.2890C>T non_coding_transcript_exon_variant 0.25
rrl 1476583 n.2926G>A non_coding_transcript_exon_variant 0.75
rrl 1476584 n.2927C>T non_coding_transcript_exon_variant 1.0
rrl 1476594 n.2937C>T non_coding_transcript_exon_variant 1.0
rrl 1476597 n.2940G>A non_coding_transcript_exon_variant 1.0
rrl 1476603 n.2946G>A non_coding_transcript_exon_variant 1.0
rrl 1476628 n.2971T>A non_coding_transcript_exon_variant 1.0
rrl 1476664 n.3007T>C non_coding_transcript_exon_variant 1.0
rrl 1476665 n.3008T>C non_coding_transcript_exon_variant 1.0
rrl 1476674 n.3017T>C non_coding_transcript_exon_variant 1.0
rrl 1476679 n.3022T>C non_coding_transcript_exon_variant 0.8
rrl 1476689 n.3032A>T non_coding_transcript_exon_variant 1.0
rrl 1476690 n.3033C>T non_coding_transcript_exon_variant 1.0
rrl 1476693 n.3036G>A non_coding_transcript_exon_variant 1.0
rrl 1476695 n.3038T>A non_coding_transcript_exon_variant 1.0
rrl 1476716 n.3059A>C non_coding_transcript_exon_variant 1.0
rrl 1476723 n.3066T>A non_coding_transcript_exon_variant 1.0
rrl 1476725 n.3068C>T non_coding_transcript_exon_variant 1.0
rrl 1476726 n.3069A>G non_coding_transcript_exon_variant 1.0
rrl 1476731 n.3074G>A non_coding_transcript_exon_variant 0.67
rrl 1476732 n.3075T>C non_coding_transcript_exon_variant 1.0
rrl 1476746 n.3089T>C non_coding_transcript_exon_variant 0.67
rrl 1476747 n.3090C>T non_coding_transcript_exon_variant 0.67
rrl 1476754 n.3097G>A non_coding_transcript_exon_variant 1.0
rrl 1476759 n.3102T>C non_coding_transcript_exon_variant 1.0
rrl 1476770 n.3113T>C non_coding_transcript_exon_variant 1.0
rrl 1476771 n.3114G>A non_coding_transcript_exon_variant 1.0
inhA 1674522 c.321G>C synonymous_variant 1.0
inhA 1674534 c.333G>C synonymous_variant 1.0
inhA 1674542 p.Ala114Glu missense_variant 1.0
inhA 1674546 c.345T>C synonymous_variant 1.0
inhA 1674549 c.348G>C synonymous_variant 1.0
inhA 1674550 p.Ser117Ala missense_variant 1.0
inhA 1674576 c.375T>C synonymous_variant 1.0
rpsA 1833634 c.93G>A synonymous_variant 1.0
rpsA 1833661 c.120A>G synonymous_variant 1.0
rpsA 1833664 c.123C>A synonymous_variant 1.0
rpsA 1833676 c.135A>G synonymous_variant 1.0
rpsA 1833679 c.138G>T synonymous_variant 1.0
rpsA 1833685 c.144G>T synonymous_variant 1.0
rpsA 1833694 c.153G>C synonymous_variant 1.0
rpsA 1834030 c.489C>G synonymous_variant 1.0
rpsA 1834177 c.636A>C synonymous_variant 1.0
rpsA 1834189 c.648G>C synonymous_variant 1.0
rpsA 1834190 c.649_650delTCinsAG synonymous_variant 1.0
rpsA 1834213 c.672G>C synonymous_variant 1.0
rpsA 1834396 c.855G>T synonymous_variant 1.0
rpsA 1834654 c.1113G>A synonymous_variant 1.0
rpsA 1834667 p.Ala376Ser missense_variant 1.0
rpsA 1834690 c.1149T>C synonymous_variant 1.0
rpsA 1834732 c.1191T>C synonymous_variant 1.0
rpsA 1834738 c.1197A>G synonymous_variant 1.0
ndh 2102611 c.432G>A synonymous_variant 1.0
ndh 2102632 c.411C>T synonymous_variant 1.0
ndh 2102644 c.399A>G synonymous_variant 1.0
katG 2155637 p.Leu159Ile missense_variant 1.0
katG 2155659 p.Val151Leu missense_variant 1.0
katG 2155668 c.444G>C synonymous_variant 1.0
katG 2155674 c.438G>T synonymous_variant 1.0
Rv1979c 2223203 c.-39G>T upstream_gene_variant 1.0
kasA 2517941 c.-174C>G upstream_gene_variant 1.0
kasA 2517989 c.-126T>C upstream_gene_variant 1.0
kasA 2517993 c.-122G>T upstream_gene_variant 1.0
kasA 2518013 c.-102G>A upstream_gene_variant 1.0
kasA 2518019 c.-96A>G upstream_gene_variant 1.0
Rv2752c 3065016 c.1176C>T synonymous_variant 1.0
Rv2752c 3065022 c.1170G>C synonymous_variant 1.0
Rv2752c 3065025 c.1167G>T synonymous_variant 1.0
Rv2752c 3065058 c.1134C>G synonymous_variant 1.0
Rv2752c 3065061 c.1131C>T synonymous_variant 1.0
Rv2752c 3065067 c.1125C>T synonymous_variant 1.0
Rv2752c 3065070 c.1122C>T synonymous_variant 1.0
thyX 3067610 p.Lys112Asn missense_variant 1.0
thyX 3067622 c.324C>T synonymous_variant 1.0
thyX 3067631 c.315C>G synonymous_variant 1.0
thyX 3067640 c.306G>C synonymous_variant 1.0
thyX 3067661 c.285C>G synonymous_variant 1.0
ald 3087699 p.Leu294Val missense_variant 1.0
ald 3087704 c.885T>C synonymous_variant 1.0
rpoA 3877602 c.906C>T synonymous_variant 1.0
rpoA 3877638 c.870T>C synonymous_variant 1.0
rpoA 3877647 c.861C>T synonymous_variant 1.0
rpoA 3877656 c.852T>G synonymous_variant 1.0
rpoA 3877920 c.588G>C synonymous_variant 1.0
rpoA 3877923 c.585C>T synonymous_variant 1.0
rpoA 3877926 c.582G>C synonymous_variant 1.0
rpoA 3877934 c.574C>T synonymous_variant 1.0
rpoA 3878247 c.261G>C synonymous_variant 1.0
rpoA 3878256 c.252G>C synonymous_variant 1.0
rpoA 3878262 p.Ser82Gly missense_variant 1.0
rpoA 3878271 c.237T>C synonymous_variant 1.0
clpC1 4038474 p.Ser744Ala missense_variant 1.0
clpC1 4038486 p.Gly740Asn missense_variant 1.0
clpC1 4038488 p.Ala739Gly missense_variant 1.0
clpC1 4038499 p.Ser736Gly missense_variant 1.0
clpC1 4038519 p.Arg729Gln missense_variant 1.0
clpC1 4038563 c.2142C>T synonymous_variant 1.0
clpC1 4038587 c.2118C>G synonymous_variant 1.0
clpC1 4038596 c.2109A>G synonymous_variant 1.0
clpC1 4038602 c.2103G>C synonymous_variant 1.0
clpC1 4038623 c.2082A>G synonymous_variant 1.0
clpC1 4038640 p.Asp689Asn missense_variant 1.0
clpC1 4038767 c.1938G>T synonymous_variant 1.0
clpC1 4038770 c.1935C>A synonymous_variant 1.0
clpC1 4038773 c.1932T>C synonymous_variant 1.0
clpC1 4038779 c.1926C>G synonymous_variant 1.0
clpC1 4038782 c.1923G>C synonymous_variant 1.0
clpC1 4038790 c.1915C>T synonymous_variant 1.0
clpC1 4038812 c.1893T>C synonymous_variant 1.0
clpC1 4038815 c.1890G>C synonymous_variant 1.0
clpC1 4038842 c.1863G>C synonymous_variant 1.0
clpC1 4039142 c.1563A>G synonymous_variant 1.0
clpC1 4039145 c.1560G>C synonymous_variant 1.0
clpC1 4039169 p.Glu512Asp missense_variant 1.0
clpC1 4039178 c.1527G>C synonymous_variant 1.0
clpC1 4039517 c.1188C>G synonymous_variant 1.0
clpC1 4039541 c.1164C>G synonymous_variant 1.0
clpC1 4039850 c.855T>C synonymous_variant 1.0
clpC1 4039865 c.840T>C synonymous_variant 1.0
clpC1 4039913 c.792C>T synonymous_variant 1.0
clpC1 4039925 c.780C>T synonymous_variant 1.0
clpC1 4040603 c.102T>G synonymous_variant 1.0
clpC1 4040606 c.99T>C synonymous_variant 1.0
clpC1 4040618 c.87C>G synonymous_variant 1.0
clpC1 4040644 c.61A>C synonymous_variant 1.0
clpC1 4040648 c.57G>A synonymous_variant 1.0
clpC1 4040690 c.15T>C synonymous_variant 1.0
clpC1 4040695 c.10C>A synonymous_variant 1.0
clpC1 4040696 c.9A>G synonymous_variant 1.0
clpC1 4040699 c.6C>T synonymous_variant 1.0
clpC1 4040711 c.-7G>A upstream_gene_variant 1.0
clpC1 4040724 c.-20G>T upstream_gene_variant 1.0
embC 4241584 c.1722T>C synonymous_variant 1.0
embC 4241587 c.1725C>G synonymous_variant 1.0
embC 4241593 c.1731C>G synonymous_variant 1.0
embC 4241614 c.1752A>C synonymous_variant 1.0
embC 4241623 c.1761C>G synonymous_variant 1.0
embC 4241626 c.1764T>C synonymous_variant 1.0
embA 4244712 p.Ala494Ser missense_variant 0.71
embA 4244726 p.Asp498Glu missense_variant 1.0
embA 4244747 c.1515T>C synonymous_variant 1.0
ethR 4326853 c.-696G>A upstream_gene_variant 1.0
ethR 4327060 c.-489G>A upstream_gene_variant 1.0
ethA 4327068 p.Leu136Val missense_variant 1.0
ethA 4327720 c.-247T>G upstream_gene_variant 1.0
ethA 4327740 c.-267A>G upstream_gene_variant 1.0
ethA 4327746 c.-273T>C upstream_gene_variant 1.0
ethA 4327749 c.-276G>C upstream_gene_variant 1.0