Rv3457c - c.861C>T
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
70 Sensitive
1 RR-TB
31 HR-TB
3 MDR-TB
4 Pre-XDR-TB
0 XDR-TB
37 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage2.2.1 | 12 |
| lineage1.1.2 | 2 |
| lineage4.9 | 84 |
| lineage4.1.2 | 2 |
| lineage4.8;lineage4.9 | 2 |
| lineage3.1.2.1;lineage4 | 1 |
| 1 | |
| lineage4.2;lineage4.6.3;lineage4.9.1 | 2 |
| La1.7.X-unk4;lineage4.9 | 1 |
| M.canetti | 11 |
| La1.7;lineage4.9;lineage7 | 3 |
| La3;M.canetti;lineage4.9 | 1 |
| lineage4.1.1.2 | 1 |
| lineage3.1.1 | 1 |
| lineage4.6.2.2 | 1 |
| lineage4 | 1 |
| La1.8.1 | 2 |
| lineage2.2.1.2 | 1 |
| lineage1.1.3.1 | 1 |
| lineage4.8 | 1 |
| La1.7;lineage3;lineage4.9;lineage7 | 1 |
| La1.2.BCG | 1 |
| lineage1.2.1.1 | 1 |
| La1.2.BCG;lineage4.9 | 1 |
| lineage3 | 1 |
| lineage4.3.3 | 1 |
| lineage4.2;lineage4.6.3;lineage4.9 | 1 |
| lineage4.3.4.2.1 | 1 |
| lineage3.1.2.1 | 1 |
| La1;lineage2;lineage4.9 | 1 |
| La1;lineage4.9 | 2 |
| La1.7;lineage4.9 | 1 |
| lineage4.2.1 | 1 |
| lineage4.3.2.1 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 146 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR9971114 | Other | lineage2.2.1 | None | SRR5341310 | Other | lineage1.1.2 | None | SRR3675246 | Other | lineage4.9 | None | SRR9970978 | Sensitive | lineage4.1.2 | None | SRR6045158 | Other | lineage4.9 | None | SRR9971112 | Other | lineage2.2.1 | None | SRR9970980 | Other | lineage4.1.2 | None | ERR1034634 | HR-TB | lineage4.9 | None | SRR6044835 | Other | lineage4.9 | None | ERR4024991 | Other | lineage4.8;lineage4.9 | None | SRR11662690 | HR-TB | lineage4.9 | None | SRR5341469 | HR-TB | lineage4.9 | None | SRR5341387 | Other | lineage4.9 | None | SRR19295647 | Sensitive | lineage4.9 | None | ERR4797474 | Sensitive | lineage4.9 | None | ERR6866022 | Other | lineage4.8;lineage4.9 | None | SRR28351455 | Other | lineage3.1.2.1;lineage4 | None | ERR926157 | Sensitive | lineage4.9 | None | SRR1158918 | Sensitive | lineage4.9 | None | ERR3283040 | HR-TB | lineage4.9 | None | ERR3797029 | Other | lineage4.9 | None | SRR5341373 | Other | lineage4.9 | None | ERR736872 | HR-TB | lineage4.9 | None | ERR1063896 | Sensitive | None | ERR3283026 | HR-TB | lineage4.2;lineage4.6.3;lineage4.9.1 | None | SRR3675580 | Sensitive | lineage4.9 | None | ERR502511 | Sensitive | lineage4.9 | None | SRR3675520 | Other | La1.7.X-unk4;lineage4.9 | None | SRR10522763 | Sensitive | M.canetti | None | ERR4188247 | HR-TB | lineage4.9 | None | SRR5341432 | Sensitive | La1.7;lineage4.9;lineage7 | None | ERR473277 | HR-TB | La3;M.canetti;lineage4.9 | None | ERR736848 | Other | lineage4.9 | None | SRR5341300 | HR-TB | lineage4.9 | None | SRR3675235 | Sensitive | lineage4.9 | None | ERR3283030 | HR-TB | lineage4.9 | None | SRR5341366 | Sensitive | lineage4.9 | None | ERR4810624 | HR-TB | lineage2.2.1 | None | ERR926158 | Sensitive | lineage4.9 | None | ERR4818252 | Sensitive | lineage4.1.1.2 | None | ERR4407457 | Sensitive | lineage3.1.1 | None | ERR4819809 | HR-TB | lineage4.6.2.2 | None | ERR4797193 | HR-TB | lineage1.1.2 | None | SRR5341461 | HR-TB | lineage4.9 | None | ERR1063846 | HR-TB | lineage4.9 | None | ERR926161 | Sensitive | lineage4.9 | None | ERR3797085 | Other | lineage4.9 | None | ERR3273109 | HR-TB | lineage4 | None | ERR108471 | HR-TB | lineage4.9 | None | ERR3797073 | Other | La1.8.1 | None | SRR18549032 | HR-TB | lineage2.2.1.2 | None | SRR5341453 | Other | lineage4.9 | None | SRR12416842 | HR-TB | lineage4.9 | None | ERR6866639 | Other | lineage4.9 | None | ERR8479578 | Sensitive | lineage1.1.3.1 | None | SRR9970979 | Sensitive | lineage4.8 | None | ERR5311094 | HR-TB | lineage4.9 | None | ERR323085 | Sensitive | lineage4.9 | None | SRR5341315 | Other | La1.7;lineage3;lineage4.9;lineage7 | None | SRR5341422 | HR-TB | La1.7;lineage4.9;lineage7 | None | SRR5341299 | HR-TB | lineage4.9 | None | SRR1915487 | Other | La1.2.BCG | None | ERR551180 | Sensitive | M.canetti | None | ERR926165 | Sensitive | lineage4.9 | None | ERR2693252 | Sensitive | lineage4.9 | None | SRR6045795 | Sensitive | lineage2.2.1 | None | ERR4796254 | Sensitive | lineage4.9 | None | ERR323062 | Sensitive | lineage4.9 | None | ERR926155 | Sensitive | lineage4.9 | None | ERR137286 | Other | lineage4.9 | None | SRR6046611 | Sensitive | lineage4.9 | None | SRR5341313 | Sensitive | La1.7;lineage4.9;lineage7 | None | ERR4831620 | MDR-TB | lineage2.2.1 | None | SRR1159378 | Other | lineage4.9 | None | SRR10522783 | Sensitive | M.canetti | None | SRR5341400 | Sensitive | lineage4.9 | None | ERR1336822 | Sensitive | M.canetti | None | ERR551182 | Sensitive | M.canetti | None | ERR6866410 | Sensitive | lineage4.9 | None | ERR736837 | Pre-XDR-TB | lineage4.9 | None | ERR926162 | Sensitive | lineage4.9 | None | ERR4799547 | HR-TB | lineage2.2.1 | None | SRR5341293 | Sensitive | lineage4.9 | None | ERR216965 | Sensitive | lineage4.9 | None | ERR4798099 | Other | lineage4.9 | None | ERR4831616 | MDR-TB | lineage2.2.1 | None | ERR4814734 | Other | lineage1.2.1.1 | None | ERR926160 | Sensitive | lineage4.9 | None | ERR736856 | Sensitive | lineage4.9 | None | SRR10809074 | Sensitive | lineage4.9 | None | SRR5341384 | HR-TB | lineage4.9 | None | ERR502510 | Sensitive | lineage4.9 | None | ERR3797015 | HR-TB | lineage4.9 | None | SRR10315567 | Other | lineage2.2.1 | None | SRR6511621 | Sensitive | lineage4.9 | None | SRR1915481 | Other | La1.2.BCG;lineage4.9 | None | ERR1035122 | Sensitive | lineage4.9 | None | SRR5341412 | Pre-XDR-TB | lineage3 | None | ERR3290633 | Other | lineage4.2;lineage4.6.3;lineage4.9.1 | None | SRR5341308 | Sensitive | lineage4.9 | None | SRR5153091 | HR-TB | lineage4.3.3 | None | SRR5341467 | Other | lineage4.9 | None | ERR779852 | Sensitive | lineage4.9 | None | ERR736834 | Sensitive | lineage4.9 | None | SRR3675585 | Sensitive | lineage4.9 | None | SRR5341298 | Sensitive | lineage4.9 | None | ERR4797264 | Sensitive | lineage4.9 | None | ERR4796929 | Sensitive | lineage4.9 | None | SAMEA2533757 | Sensitive | M.canetti | None | ERR926156 | Sensitive | lineage4.9 | None | SRR24061597 | Sensitive | M.canetti | None | ERR5311097 | Sensitive | lineage4.2;lineage4.6.3;lineage4.9 | None | SRR7535082 | Sensitive | lineage4.9 | None | ERR323066 | Sensitive | lineage4.9 | None | ERR3597004 | Sensitive | M.canetti | None | ERR551179 | Sensitive | M.canetti | None | ERR702405 | Sensitive | lineage4.9 | None | SRR5341341 | Pre-XDR-TB | lineage2.2.1 | None | ERR323107 | Sensitive | lineage4.9 | None | SRR16156817 | Other | lineage4.9 | None | ERR400345 | Other | lineage4.9 | None | ERR245794 | HR-TB | lineage4.3.4.2.1 | None | SRR29096943 | Sensitive | lineage3.1.2.1 | None | SRR14801749 | HR-TB | lineage4.9 | None | SRR11662694 | Other | lineage4.9 | None | ERR4797184 | Sensitive | lineage4.9 | None | ERR124636 | Sensitive | lineage4.9 | None | ERR067699 | Sensitive | La1;lineage2;lineage4.9 | None | SRR10808668 | Sensitive | lineage2.2.1 | None | SRR10808805 | Other | La1;lineage4.9 | None | SRR18289195 | Sensitive | M.canetti | None | ERR926163 | Other | lineage4.9 | None | ERR751326 | Other | lineage4.9 | None | ERR1023525 | HR-TB | La1.7;lineage4.9 | None | SRR12142339 | HR-TB | lineage2.2.1 | None | ERR926159 | Sensitive | lineage4.9 | None | SRR14802079 | MDR-TB | lineage4.2.1 | None | ERR551181 | Sensitive | M.canetti | None | SRR5341303 | Sensitive | lineage4.9 | None | SRR5341465 | Pre-XDR-TB | lineage2.2.1 | None | SRR5431730 | Other | La1.8.1 | None | ERR4799378 | Sensitive | lineage4.9 | None | ERR971389 | Sensitive | lineage4.9 | None | SRR9970981 | RR-TB | lineage4.3.2.1 | None | ERR133825 | HR-TB | La1;lineage4.9 | None | ERR926164 | Other | lineage4.9 | None |
|---|
