TB-Profiler result

Run: SRR24061597
Summary

Run ID: SRR24061597

Sample name:

Date: 16-04-2023 20:11:10

Number of reads: 1264895

Percentage reads mapped: 96.81

Strain:

Drug-resistance: Sensitive

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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Rifampicin
Isoniazid
Ethambutol
Pyrazinamide
Streptomycin
Fluoroquinolones
Moxifloxacin
Ofloxacin
Levofloxacin
Ciprofloxacin
Aminoglycosides
Amikacin
Capreomycin
Kanamycin
Cycloserine
Ethionamide
Clofazimine
Para-aminosalicylic_acid
Delamanid
Bedaquiline
Linezolid
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
gyrB 5452 c.213G>A synonymous_variant 0.92
gyrB 5731 c.492C>T synonymous_variant 1.0
gyrB 6007 c.768C>T synonymous_variant 1.0
gyrA 6454 c.-848C>T upstream_gene_variant 1.0
gyrA 6721 c.-581C>T upstream_gene_variant 1.0
gyrA 7093 c.-209T>C upstream_gene_variant 1.0
gyrA 7362 p.Glu21Gln missense_variant 1.0
gyrA 7585 p.Ser95Thr missense_variant 1.0
gyrA 7835 c.534A>G synonymous_variant 0.94
gyrA 7988 c.687G>C synonymous_variant 1.0
gyrA 8714 c.1413A>G synonymous_variant 1.0
gyrA 9143 c.1842T>C synonymous_variant 1.0
gyrA 9182 c.1881T>C synonymous_variant 1.0
gyrA 9304 p.Gly668Asp missense_variant 1.0
gyrA 9377 c.2076A>G synonymous_variant 1.0
gyrA 9716 c.2415T>C synonymous_variant 1.0
gyrA 9740 c.2439G>A synonymous_variant 1.0
gyrA 9776 c.2475T>C synonymous_variant 1.0
fgd1 490666 c.-117G>T upstream_gene_variant 1.0
fgd1 490678 c.-105_-104insG upstream_gene_variant 1.0
fgd1 490687 c.-96T>C upstream_gene_variant 1.0
fgd1 491406 p.Met208Ile missense_variant 1.0
fgd1 491742 c.960T>C synonymous_variant 1.0
mshA 575665 c.318G>C synonymous_variant 1.0
mshA 575971 c.624C>T synonymous_variant 1.0
mshA 576285 p.Val313Ala missense_variant 1.0
mshA 576757 c.1410C>G synonymous_variant 1.0
ccsA 620256 c.366C>G synonymous_variant 1.0
ccsA 620257 p.Ile123Ala missense_variant 1.0
ccsA 620415 c.525T>C synonymous_variant 1.0
ccsA 620490 c.600A>C synonymous_variant 1.0
ccsA 620808 c.918T>C synonymous_variant 1.0
rpoB 759911 c.105C>T synonymous_variant 1.0
rpoB 760715 c.909C>T synonymous_variant 1.0
rpoB 760812 p.Ile336Val missense_variant 1.0
rpoB 761510 c.1704T>C synonymous_variant 1.0
rpoB 761573 c.1767C>A synonymous_variant 1.0
rpoC 763031 c.-339T>C upstream_gene_variant 1.0
rpoC 763259 c.-111G>C upstream_gene_variant 1.0
rpoC 763660 c.291T>C synonymous_variant 1.0
rpoC 764107 c.738C>T synonymous_variant 1.0
rpoC 764134 c.765C>G synonymous_variant 1.0
rpoC 764152 c.783C>T synonymous_variant 1.0
rpoC 764159 c.790C>T synonymous_variant 1.0
rpoC 764195 p.Ser276Ala missense_variant 1.0
rpoC 764198 c.829C>T synonymous_variant 1.0
rpoC 764203 c.834G>T synonymous_variant 1.0
rpoC 764206 p.Asp279Glu missense_variant 1.0
rpoC 764245 c.876C>T synonymous_variant 1.0
rpoC 764257 c.888G>C synonymous_variant 1.0
rpoC 764275 c.906C>T synonymous_variant 1.0
rpoC 764278 c.909A>G synonymous_variant 1.0
rpoC 764293 c.924G>A synonymous_variant 1.0
rpoC 764341 c.972G>A synonymous_variant 1.0
rpoC 764365 c.996C>T synonymous_variant 1.0
rpoC 764405 c.1036A>C synonymous_variant 1.0
rpoC 764497 c.1128A>G synonymous_variant 1.0
rpoC 764506 c.1137C>T synonymous_variant 1.0
rpoC 764510 c.1141C>T synonymous_variant 1.0
rpoC 764521 c.1152T>C synonymous_variant 1.0
rpoC 764524 c.1155C>T synonymous_variant 1.0
rpoC 764527 c.1158C>T synonymous_variant 1.0
rpoC 764533 c.1164C>T synonymous_variant 1.0
rpoC 764536 c.1167G>C synonymous_variant 1.0
rpoC 764539 c.1170C>G synonymous_variant 1.0
rpoC 764554 c.1185C>T synonymous_variant 1.0
rpoC 764575 c.1206T>G synonymous_variant 1.0
rpoC 764578 c.1209C>G synonymous_variant 1.0
rpoC 764632 c.1263T>G synonymous_variant 1.0
rpoC 764650 c.1281G>C synonymous_variant 1.0
rpoC 764651 c.1282_1284delTCGinsAGC synonymous_variant 1.0
rpoC 765001 c.1632C>T synonymous_variant 0.95
rpoC 765082 c.1713G>A synonymous_variant 0.97
rpoC 765152 p.Asp595Asn missense_variant 1.0
rpoC 765409 c.2040T>C synonymous_variant 1.0
rpoC 765478 c.2109T>C synonymous_variant 1.0
rpoC 766152 p.Asp928Gly missense_variant 1.0
rpoC 766675 c.3306C>T synonymous_variant 1.0
rpoC 766870 c.3501C>T synonymous_variant 1.0
rpoC 766900 c.3531T>C synonymous_variant 1.0
rpoC 766945 c.3576A>G synonymous_variant 1.0
rpoC 767062 c.3693C>A synonymous_variant 1.0
mmpL5 775639 p.Ile948Val missense_variant 1.0
mmpL5 775748 c.2733T>C synonymous_variant 1.0
mmpL5 776100 p.Thr794Ile missense_variant 1.0
mmpL5 776132 c.2349A>G synonymous_variant 1.0
mmpL5 776544 p.Lys646Arg missense_variant 1.0
mmpL5 776807 c.1674G>C synonymous_variant 1.0
mmpL5 776954 c.1527A>G synonymous_variant 1.0
mmpL5 777294 p.Gly396Ala missense_variant 1.0
mmpL5 777431 c.1050A>G synonymous_variant 1.0
mmpL5 777964 p.Val173Ile missense_variant 1.0
mmpL5 778473 p.Val3Ala missense_variant 1.0
mmpL5 778573 c.-93C>G upstream_gene_variant 1.0
mmpL5 778654 c.-174A>G upstream_gene_variant 1.0
mmpL5 778921 c.-441G>A upstream_gene_variant 1.0
mmpL5 779439 c.-959G>T upstream_gene_variant 1.0
rpsL 781395 c.-165T>C upstream_gene_variant 1.0
rplC 800618 c.-191T>C upstream_gene_variant 1.0
rplC 800970 c.162T>C synonymous_variant 1.0
rplC 801003 c.195G>A synonymous_variant 1.0
rplC 801267 c.459A>G synonymous_variant 1.0
fbiC 1302810 c.-121C>T upstream_gene_variant 1.0
fbiC 1302860 c.-71G>A upstream_gene_variant 1.0
fbiC 1303695 c.765T>C synonymous_variant 1.0
fbiC 1304598 c.1668C>T synonymous_variant 1.0
Rv1258c 1406466 p.Ser292Leu missense_variant 1.0
Rv1258c 1406492 c.849C>A synonymous_variant 1.0
Rv1258c 1406496 p.Ala282Val missense_variant 1.0
embR 1417294 c.54A>G synonymous_variant 1.0
embR 1417454 c.-107C>A upstream_gene_variant 1.0
rrs 1471659 n.-187C>T upstream_gene_variant 1.0
rrl 1473658 n.1T>A non_coding_transcript_exon_variant 1.0
rrl 1474414 n.757C>T non_coding_transcript_exon_variant 1.0
rrl 1474438 n.781A>G non_coding_transcript_exon_variant 1.0
rrl 1475266 n.1609T>C non_coding_transcript_exon_variant 1.0
fabG1 1673257 c.-183C>G upstream_gene_variant 1.0
inhA 1674816 c.615T>C synonymous_variant 1.0
rpsA 1833367 c.-175G>C upstream_gene_variant 1.0
rpsA 1833370 c.-172G>T upstream_gene_variant 1.0
rpsA 1833381 c.-161T>C upstream_gene_variant 0.91
rpsA 1833435 c.-107G>A upstream_gene_variant 0.93
rpsA 1833471 c.-71_-70insC upstream_gene_variant 1.0
rpsA 1833512 c.-29delC upstream_gene_variant 1.0
rpsA 1833554 p.Thr5Ala missense_variant 0.96
rpsA 1833568 c.27G>C synonymous_variant 0.96
rpsA 1834169 p.Thr210Ala missense_variant 1.0
rpsA 1834912 c.1371A>G synonymous_variant 1.0
tlyA 1917972 c.33A>G synonymous_variant 1.0
ndh 2101777 c.1266C>G synonymous_variant 1.0
ndh 2102353 p.Gln230His missense_variant 1.0
katG 2154724 p.Arg463Leu missense_variant 1.0
katG 2155219 p.Leu298* stop_gained 0.17
katG 2156055 c.57C>T synonymous_variant 1.0
PPE35 2167777 p.Leu946Val missense_variant 0.96
PPE35 2167926 p.Leu896Ser missense_variant 1.0
PPE35 2168522 c.2091T>C synonymous_variant 1.0
PPE35 2168531 c.2082G>A synonymous_variant 1.0
PPE35 2168564 c.2049T>C synonymous_variant 1.0
PPE35 2168567 c.2046A>G synonymous_variant 1.0
PPE35 2168575 p.Ala680Pro missense_variant 1.0
PPE35 2168588 c.2025G>A synonymous_variant 1.0
PPE35 2168621 c.1992C>T synonymous_variant 1.0
PPE35 2168633 c.1980C>T synonymous_variant 1.0
PPE35 2169461 p.Val384Ala missense_variant 1.0
PPE35 2169605 c.1008T>C synonymous_variant 1.0
PPE35 2169623 c.990T>C synonymous_variant 1.0
PPE35 2169643 p.Ala324Ser missense_variant 1.0
PPE35 2169668 c.945C>T synonymous_variant 1.0
PPE35 2169686 c.927T>C synonymous_variant 1.0
PPE35 2169717 p.Asn299Ile missense_variant 1.0
PPE35 2169740 c.873C>T synonymous_variant 1.0
PPE35 2169767 c.846A>G synonymous_variant 1.0
PPE35 2169779 c.834A>G synonymous_variant 1.0
PPE35 2169809 c.804A>T synonymous_variant 1.0
PPE35 2169819 p.Asn265Ser missense_variant 1.0
PPE35 2169839 c.774C>T synonymous_variant 1.0
PPE35 2169857 c.756A>G synonymous_variant 1.0
PPE35 2169887 c.726C>T synonymous_variant 1.0
PPE35 2169932 c.681C>T synonymous_variant 1.0
PPE35 2169940 p.Gly225Arg missense_variant 1.0
PPE35 2169948 p.Asn222Ile missense_variant 1.0
PPE35 2169956 c.657T>C synonymous_variant 1.0
PPE35 2169959 c.654C>T synonymous_variant 1.0
PPE35 2169974 c.639T>C synonymous_variant 1.0
PPE35 2169977 c.636C>T synonymous_variant 1.0
PPE35 2169989 c.624C>T synonymous_variant 1.0
PPE35 2169992 c.621C>T synonymous_variant 1.0
PPE35 2169996 p.Ser206Asn missense_variant 1.0
PPE35 2169998 c.615T>C synonymous_variant 1.0
PPE35 2170010 c.603G>C synonymous_variant 1.0
PPE35 2170016 c.597C>G synonymous_variant 1.0
PPE35 2170028 p.Met195Ile missense_variant 1.0
PPE35 2170035 p.Val193Ala missense_variant 1.0
PPE35 2170125 p.Val163Ala missense_variant 1.0
PPE35 2170133 c.480G>C synonymous_variant 1.0
PPE35 2170148 c.465T>C synonymous_variant 1.0
PPE35 2170156 p.Ala153Thr missense_variant 1.0
PPE35 2170169 c.444A>G synonymous_variant 1.0
PPE35 2170175 c.438G>C synonymous_variant 1.0
PPE35 2170232 c.381T>C synonymous_variant 1.0
PPE35 2170246 p.Ser123Ala missense_variant 1.0
PPE35 2170247 p.Ile122Met missense_variant 1.0
PPE35 2170250 c.363G>A synonymous_variant 1.0
PPE35 2170261 p.Ile118Val missense_variant 1.0
PPE35 2170267 p.Gly116Ser missense_variant 1.0
PPE35 2170268 c.345C>T synonymous_variant 1.0
PPE35 2170306 p.Ala103Thr missense_variant 1.0
PPE35 2170314 p.Val100Ala missense_variant 1.0
PPE35 2170319 c.294G>A synonymous_variant 1.0
PPE35 2170330 p.Ala95Thr missense_variant 1.0
PPE35 2170334 p.Met93Ile missense_variant 1.0
PPE35 2170351 p.Thr88Ala missense_variant 1.0
PPE35 2170485 p.Val43Ala missense_variant 1.0
PPE35 2170499 c.114A>G synonymous_variant 1.0
PPE35 2170505 c.108C>G synonymous_variant 1.0
PPE35 2170511 c.102G>T synonymous_variant 1.0
PPE35 2170553 c.60C>A synonymous_variant 1.0
PPE35 2170585 p.Ile10Val missense_variant 1.0
PPE35 2170601 c.12A>G synonymous_variant 1.0
PPE35 2170620 c.-9_-8insT upstream_gene_variant 0.88
PPE35 2170671 c.-59G>T upstream_gene_variant 0.75
PPE35 2170676 c.-64A>T upstream_gene_variant 0.75
PPE35 2170677 c.-65G>A upstream_gene_variant 0.75
PPE35 2170679 c.-67A>G upstream_gene_variant 0.75
PPE35 2170681 c.-69G>C upstream_gene_variant 0.75
PPE35 2170690 c.-78A>G upstream_gene_variant 0.75
PPE35 2170693 c.-81C>G upstream_gene_variant 0.75
PPE35 2170694 c.-82T>C upstream_gene_variant 0.75
PPE35 2170695 c.-83C>G upstream_gene_variant 0.75
PPE35 2170703 c.-91T>A upstream_gene_variant 0.89
PPE35 2170717 c.-105C>T upstream_gene_variant 0.88
PPE35 2170720 c.-108A>G upstream_gene_variant 0.88
PPE35 2170722 c.-110G>A upstream_gene_variant 0.88
PPE35 2170723 c.-111C>T upstream_gene_variant 0.88
PPE35 2170726 c.-115delT upstream_gene_variant 0.88
PPE35 2170766 c.-154T>C upstream_gene_variant 1.0
PPE35 2170770 c.-158T>G upstream_gene_variant 1.0
PPE35 2170780 c.-168G>A upstream_gene_variant 1.0
PPE35 2170796 c.-184C>A upstream_gene_variant 1.0
PPE35 2170809 c.-198delA upstream_gene_variant 1.0
PPE35 2170812 c.-200G>C upstream_gene_variant 1.0
Rv1979c 2222308 p.Asp286Gly missense_variant 1.0
Rv1979c 2222357 p.Thr270Ala missense_variant 1.0
Rv1979c 2223293 c.-129A>G upstream_gene_variant 1.0
Rv1979c 2223318 c.-154A>G upstream_gene_variant 1.0
pncA 2288855 c.387T>C synonymous_variant 1.0
pncA 2289104 c.138A>G synonymous_variant 1.0
pncA 2289323 c.-82G>A upstream_gene_variant 1.0
pncA 2289664 c.-423G>A upstream_gene_variant 1.0
pncA 2289820 c.-579T>C upstream_gene_variant 1.0
pncA 2290120 c.-879T>C upstream_gene_variant 1.0
kasA 2518132 c.18C>T synonymous_variant 0.94
kasA 2519287 c.1173T>C synonymous_variant 1.0
eis 2714274 c.1059G>A synonymous_variant 1.0
eis 2714714 p.Ala207Thr missense_variant 1.0
eis 2714994 c.339T>C synonymous_variant 1.0
folC 2747204 p.Ala132Gln missense_variant 1.0
folC 2747572 c.27T>C synonymous_variant 0.93
folC 2747575 c.24G>C synonymous_variant 0.93
folC 2747628 c.-30G>C upstream_gene_variant 1.0
folC 2747631 c.-33C>G upstream_gene_variant 1.0
folC 2747691 c.-93A>G upstream_gene_variant 1.0
pepQ 2859490 p.Val310Ala missense_variant 1.0
ribD 2987505 c.667C>T synonymous_variant 1.0
ribD 2987614 c.766delA frameshift_variant 1.0
Rv2752c 3064627 p.Asn522Ser missense_variant 1.0
Rv2752c 3064812 c.1380C>A synonymous_variant 1.0
Rv2752c 3065499 c.693A>G synonymous_variant 0.95
Rv2752c 3066354 c.-163G>C upstream_gene_variant 1.0
thyX 3067239 p.Ala236Asp missense_variant 1.0
thyX 3067444 p.Arg168Cys missense_variant 1.0
thyA 3074160 c.312A>G synonymous_variant 1.0
thyA 3074238 c.234C>T synonymous_variant 0.98
thyA 3074247 c.225C>T synonymous_variant 1.0
ald 3086788 c.-32T>C upstream_gene_variant 1.0
ald 3087122 c.303T>C synonymous_variant 1.0
ald 3087140 c.321G>A synonymous_variant 1.0
ald 3087663 p.Thr282Ser missense_variant 0.14
fbiD 3339402 c.285C>T synonymous_variant 1.0
fbiD 3339568 c.451C>T synonymous_variant 1.0
Rv3083 3448325 c.-179G>A upstream_gene_variant 1.0
Rv3083 3448403 c.-101G>A upstream_gene_variant 1.0
Rv3083 3448453 c.-51G>T upstream_gene_variant 1.0
Rv3083 3448474 c.-30G>T upstream_gene_variant 1.0
Rv3083 3448495 c.-9G>C upstream_gene_variant 1.0
Rv3083 3448588 p.Asp29Asn missense_variant 1.0
Rv3083 3448611 c.108A>G synonymous_variant 1.0
Rv3083 3448905 c.402T>C synonymous_variant 1.0
Rv3083 3448972 p.His157Asp missense_variant 1.0
Rv3083 3449028 c.525T>C synonymous_variant 1.0
Rv3083 3449029 p.Ser176Ala missense_variant 1.0
Rv3083 3449237 p.Arg245Lys missense_variant 1.0
Rv3083 3449305 c.802T>C synonymous_variant 1.0
Rv3083 3449400 c.897C>G synonymous_variant 1.0
Rv3083 3449421 c.918T>C synonymous_variant 1.0
Rv3083 3449622 c.1119T>C synonymous_variant 1.0
Rv3083 3449652 c.1149T>C synonymous_variant 1.0
Rv3083 3449767 p.Thr422Val missense_variant 1.0
Rv3083 3449778 c.1275T>C synonymous_variant 1.0
Rv3083 3449802 c.1299T>C synonymous_variant 1.0
Rv3083 3449820 c.1317G>C synonymous_variant 1.0
Rv3083 3449832 c.1329T>C synonymous_variant 1.0
Rv3083 3449835 c.1332G>C synonymous_variant 1.0
Rv3083 3449868 c.1365C>A synonymous_variant 1.0
Rv3083 3449877 c.1374T>C synonymous_variant 1.0
Rv3083 3449885 p.Arg461Lys missense_variant 1.0
Rv3083 3449940 c.1437T>C synonymous_variant 1.0
fprA 3473996 c.-11_-10insA upstream_gene_variant 1.0
fprA 3475059 c.1053C>T synonymous_variant 0.94
fprA 3475159 p.Asn385Asp missense_variant 1.0
whiB7 3568687 c.-8A>T upstream_gene_variant 1.0
Rv3236c 3611968 c.1149T>G synonymous_variant 1.0
Rv3236c 3612211 c.906A>G synonymous_variant 1.0
Rv3236c 3612250 c.867A>G synonymous_variant 1.0
Rv3236c 3612301 c.816G>C synonymous_variant 1.0
Rv3236c 3612541 c.576G>A synonymous_variant 1.0
Rv3236c 3612561 p.Thr186Ala missense_variant 1.0
Rv3236c 3612577 c.540G>A synonymous_variant 1.0
Rv3236c 3612580 c.537C>G synonymous_variant 1.0
Rv3236c 3612709 c.408G>C synonymous_variant 1.0
Rv3236c 3613056 c.61C>T synonymous_variant 1.0
fbiB 3641840 c.306T>C synonymous_variant 1.0
fbiB 3642254 c.720G>A synonymous_variant 1.0
fbiB 3642467 c.933T>C synonymous_variant 0.97
alr 3840527 c.894A>C synonymous_variant 1.0
alr 3840719 c.702A>G synonymous_variant 1.0
alr 3840791 c.630T>C synonymous_variant 1.0
alr 3840796 p.Asp209Asn missense_variant 1.0
alr 3840914 c.507G>C synonymous_variant 1.0
alr 3840994 p.His143Asp missense_variant 1.0
alr 3841112 p.Asp103Gly missense_variant 1.0
alr 3841116 p.Ala102Gly missense_variant 1.0
alr 3841172 c.249A>C synonymous_variant 1.0
alr 3841199 c.222T>C synonymous_variant 1.0
alr 3841419 p.Val1Ala missense_variant 1.0
alr 3841426 c.-6T>C upstream_gene_variant 1.0
rpoA 3877647 c.861C>T synonymous_variant 1.0
rpoA 3878001 c.507A>G synonymous_variant 1.0
ddn 3986805 c.-39G>C upstream_gene_variant 1.0
ddn 3987050 c.207C>T synonymous_variant 1.0
ddn 3987287 c.444T>C synonymous_variant 1.0
clpC1 4038227 c.2478G>T synonymous_variant 1.0
clpC1 4038443 c.2262G>A synonymous_variant 1.0
clpC1 4038683 c.2022T>C synonymous_variant 1.0
clpC1 4038746 c.1959C>T synonymous_variant 1.0
clpC1 4038779 c.1926C>T synonymous_variant 1.0
clpC1 4038848 c.1857C>T synonymous_variant 1.0
clpC1 4038860 c.1845G>C synonymous_variant 1.0
clpC1 4038878 c.1827A>G synonymous_variant 1.0
clpC1 4038974 c.1731T>C synonymous_variant 1.0
clpC1 4039046 c.1659C>T synonymous_variant 1.0
clpC1 4039058 c.1647C>T synonymous_variant 1.0
clpC1 4039094 c.1611C>T synonymous_variant 1.0
clpC1 4039100 c.1605C>T synonymous_variant 1.0
clpC1 4039274 c.1431G>C synonymous_variant 1.0
clpC1 4039336 c.1369C>T synonymous_variant 1.0
clpC1 4039352 c.1353C>T synonymous_variant 1.0
clpC1 4039448 c.1257A>G synonymous_variant 1.0
clpC1 4039454 c.1251A>G synonymous_variant 1.0
clpC1 4039502 c.1203C>T synonymous_variant 1.0
clpC1 4039682 c.1023C>A synonymous_variant 1.0
clpC1 4039700 c.1005C>T synonymous_variant 1.0
clpC1 4039718 c.987C>T synonymous_variant 1.0
clpC1 4039817 c.888A>C synonymous_variant 1.0
clpC1 4039820 c.885T>C synonymous_variant 1.0
clpC1 4039823 c.882T>G synonymous_variant 1.0
clpC1 4040045 c.660C>G synonymous_variant 1.0
clpC1 4040048 c.657C>T synonymous_variant 1.0
clpC1 4040063 c.642G>C synonymous_variant 1.0
clpC1 4040090 c.615T>C synonymous_variant 1.0
clpC1 4040093 c.612C>G synonymous_variant 1.0
clpC1 4040147 c.558A>G synonymous_variant 1.0
clpC1 4040159 c.546G>A synonymous_variant 1.0
clpC1 4040162 c.543G>C synonymous_variant 1.0
clpC1 4040213 c.492T>C synonymous_variant 1.0
clpC1 4040267 c.438A>G synonymous_variant 1.0
clpC1 4040273 c.432T>C synonymous_variant 1.0
clpC1 4040276 c.429C>G synonymous_variant 1.0
clpC1 4040279 c.426C>G synonymous_variant 1.0
clpC1 4040363 c.342A>G synonymous_variant 1.0
clpC1 4040393 c.312G>C synonymous_variant 1.0
clpC1 4040411 c.294T>C synonymous_variant 1.0
clpC1 4040423 c.282A>G synonymous_variant 1.0
clpC1 4040450 c.255A>G synonymous_variant 1.0
clpC1 4040471 c.234T>C synonymous_variant 1.0
clpC1 4040480 c.225T>C synonymous_variant 1.0
clpC1 4040534 c.171A>G synonymous_variant 1.0
clpC1 4040551 c.154T>C synonymous_variant 1.0
clpC1 4040573 c.132T>C synonymous_variant 1.0
clpC1 4040657 c.48T>G synonymous_variant 1.0
panD 4043932 p.Met117Thr missense_variant 1.0
panD 4044243 c.39C>G synonymous_variant 1.0
embC 4239764 c.-99G>C upstream_gene_variant 1.0
embC 4240237 c.375G>C synonymous_variant 1.0
embC 4240671 p.Thr270Ile missense_variant 1.0
embA 4242643 c.-590C>T upstream_gene_variant 1.0
embA 4243377 p.Ser49Arg missense_variant 1.0
embA 4243690 p.Met153Thr missense_variant 1.0
embA 4243919 c.687G>A synonymous_variant 0.95
embA 4244154 p.Thr308Pro missense_variant 1.0
embA 4244312 c.1080T>G synonymous_variant 1.0
embA 4245023 c.1791A>G synonymous_variant 1.0
embB 4245701 c.-813G>T upstream_gene_variant 1.0
embB 4247590 c.1077A>G synonymous_variant 1.0
embB 4247646 p.Glu378Ala missense_variant 1.0
embB 4247815 c.1302C>T synonymous_variant 1.0
embB 4248195 p.Lys561Met missense_variant 1.0
embB 4248206 p.Ser565Gly missense_variant 1.0
embB 4248439 c.1926C>T synonymous_variant 1.0
embB 4248664 c.2151G>A synonymous_variant 1.0
embB 4248721 c.2208C>T synonymous_variant 1.0
embB 4248744 p.Val744Ala missense_variant 1.0
embB 4248853 c.2340G>A synonymous_variant 1.0
embB 4249069 c.2556A>G synonymous_variant 1.0
aftB 4267412 c.1425T>C synonymous_variant 1.0
aftB 4268588 c.249G>T synonymous_variant 1.0
aftB 4268615 c.222C>T synonymous_variant 1.0
ubiA 4269387 p.Glu149Asp missense_variant 1.0
aftB 4269606 c.-770T>C upstream_gene_variant 0.97
ubiA 4269811 p.Gln8Arg missense_variant 1.0
ethA 4326463 c.1011C>T synonymous_variant 1.0
ethA 4326740 p.Arg245His missense_variant 1.0
ethA 4327547 c.-75_-74insT upstream_gene_variant 1.0
whiB6 4338595 c.-75delG upstream_gene_variant 1.0
gid 4407588 c.615A>G synonymous_variant 1.0
gid 4408185 c.18C>T synonymous_variant 1.0