Rv1979c - p.Thr270Ala
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
167 Sensitive
1 RR-TB
33 HR-TB
26 MDR-TB
47 Pre-XDR-TB
5 XDR-TB
29 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage2.2.1 | 213 |
| lineage2.2.1;lineage4.5 | 2 |
| lineage1.1.1.1;lineage2.2.1 | 2 |
| M.canetti | 72 |
| La3;M.canetti | 9 |
| lineage2.2.1;lineage4.1.2.1 | 1 |
| lineage2.2.1;lineage4 | 1 |
| lineage2.2.1;lineage4.9 | 1 |
| lineage2.2.1;lineage3 | 2 |
| lineage2.2.1;lineage4.8 | 1 |
| La2;M.canetti | 1 |
| lineage4.4 | 1 |
| lineage2.2.1;lineage3.1.2 | 1 |
| lineage2.2.1;lineage3;lineage4.1.1.3;lineage4.9 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 308 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR4831750 | HR-TB | lineage2.2.1 | vn | ERR2843528 | Sensitive | lineage2.2.1 | None | ERR4828429 | Sensitive | lineage2.2.1;lineage4.5 | vn | ERR4831917 | HR-TB | lineage2.2.1 | vn | ERR4831768 | HR-TB | lineage2.2.1 | vn | ERR4831844 | HR-TB | lineage2.2.1 | vn | ERR4831984 | MDR-TB | lineage2.2.1 | vn | ERR4831826 | MDR-TB | lineage2.2.1 | vn | ERR4831866 | MDR-TB | lineage2.2.1 | vn | ERR4822451 | Sensitive | lineage2.2.1 | de | SRR28044618 | Pre-XDR-TB | lineage2.2.1 | None | ERR4828421 | Sensitive | lineage2.2.1 | vn | ERR4831761 | MDR-TB | lineage2.2.1 | vn | ERR4831771 | MDR-TB | lineage2.2.1 | vn | ERR4830374 | Sensitive | lineage2.2.1 | vn | ERR4830325 | Sensitive | lineage2.2.1 | vn | ERR4830359 | Other | lineage1.1.1.1;lineage2.2.1 | vn | ERR4830333 | Sensitive | lineage2.2.1 | vn | ERR4830420 | Sensitive | lineage2.2.1 | vn | ERR4830434 | Sensitive | lineage2.2.1 | vn | SRR5818668 | Sensitive | M.canetti | dj | ERR2517414 | Sensitive | lineage2.2.1 | nl | ERR266121 | Sensitive | M.canetti | None | SRR24061597 | Sensitive | M.canetti | None | SRR24061599 | Sensitive | M.canetti | None | SRR24061600 | Sensitive | M.canetti | None | ERR266122 | Sensitive | La3;M.canetti | None | ERR1035098 | Pre-XDR-TB | lineage2.2.1 | vn | ERR11068598 | Sensitive | lineage2.2.1 | None | SRR7496499 | Sensitive | lineage2.2.1 | us | ERR9119200 | Sensitive | lineage2.2.1 | None | DRR184897 | Sensitive | lineage2.2.1 | vn | SRR5065221 | Sensitive | lineage2.2.1 | vn | DRR184979 | Sensitive | lineage2.2.1 | vn | ERR266123 | Sensitive | M.canetti | None | SRR5074148 | Sensitive | lineage2.2.1 | vn | ERR2517145 | Sensitive | lineage2.2.1 | nl | SRR26399220 | Sensitive | lineage2.2.1 | None | SRR27450360 | Sensitive | lineage2.2.1 | None | ERR13266394 | Pre-XDR-TB | lineage2.2.1 | None | ERR4798355 | MDR-TB | lineage2.2.1 | in | ERR4798368 | Pre-XDR-TB | lineage2.2.1 | in | ERR4798760 | Pre-XDR-TB | lineage2.2.1 | in | ERR4798997 | Pre-XDR-TB | lineage2.2.1 | None | SRR10522783 | Sensitive | M.canetti | None | SRR10522763 | Sensitive | M.canetti | None | ERR551055 | Sensitive | M.canetti | None | DRR261189 | Sensitive | lineage2.2.1 | None | ERR9125475 | Sensitive | M.canetti | None | ERR9125480 | Sensitive | M.canetti | None | ERR7451301 | Sensitive | M.canetti | None | SRR26399539 | Sensitive | lineage2.2.1 | None | SRR29051432 | HR-TB | lineage2.2.1 | None | ERR3275464 | Sensitive | lineage2.2.1 | nl | ERR13266696 | Pre-XDR-TB | lineage2.2.1 | None | SRR25534461 | Sensitive | lineage2.2.1 | None | ERR13260967 | Pre-XDR-TB | lineage2.2.1 | None | SRR26399635 | Sensitive | lineage2.2.1 | None | ERR1336825 | Sensitive | La3;M.canetti | None | ERR13267119 | HR-TB | lineage2.2.1;lineage4.1.2.1 | None | ERR13266119 | Pre-XDR-TB | lineage2.2.1 | None | ERR13266659 | Pre-XDR-TB | lineage2.2.1 | None | ERR266106 | Sensitive | M.canetti | None | ERR4831839 | MDR-TB | lineage2.2.1 | None | SRR25827503 | Pre-XDR-TB | lineage2.2.1 | None | SRR26399937 | HR-TB | lineage2.2.1 | None | ERR266120 | Sensitive | M.canetti | None | SRR5818652 | Sensitive | M.canetti | dj | SRR5818653 | Sensitive | M.canetti | dj | SRR26399868 | Sensitive | lineage2.2.1 | None | SRR29050728 | Sensitive | lineage2.2.1;lineage4.5 | None | SRR24083661 | Sensitive | lineage2.2.1 | None | ERR266109 | Sensitive | M.canetti | None | SRR18002926 | Other | lineage2.2.1 | None | SRR26399492 | Other | lineage2.2.1 | None | SRR26936987 | Pre-XDR-TB | lineage2.2.1 | None | SRR30333232 | Sensitive | lineage2.2.1 | None | ERR13262066 | Pre-XDR-TB | lineage2.2.1 | None | ERR13267033 | Pre-XDR-TB | lineage2.2.1 | None | SRR10177258 | Other | M.canetti | None | SRR26399345 | Other | lineage2.2.1 | None | ERR13267118 | Pre-XDR-TB | lineage2.2.1 | None | ERR13261201 | MDR-TB | lineage2.2.1 | None | SRR21689933 | HR-TB | lineage2.2.1 | None | ERR4797967 | MDR-TB | lineage2.2.1 | in | ERR4798249 | Pre-XDR-TB | lineage2.2.1 | in | ERR4798274 | Pre-XDR-TB | lineage2.2.1 | in | ERR4799083 | MDR-TB | lineage2.2.1 | in | ERR4799734 | Pre-XDR-TB | lineage2.2.1 | in | SRR26399658 | Sensitive | lineage2.2.1 | None | ERR4797580 | Pre-XDR-TB | lineage2.2.1 | in | ERR4800282 | Pre-XDR-TB | lineage2.2.1 | in | DRR261182 | Sensitive | lineage2.2.1 | None | ERR4799299 | Pre-XDR-TB | lineage2.2.1 | in | ERR1336826 | Sensitive | La3;M.canetti | None | ERR9119388 | Sensitive | lineage2.2.1 | None | ERR551180 | Sensitive | M.canetti | None | SRR25515094 | Sensitive | lineage2.2.1 | None | DRR261180 | Sensitive | lineage2.2.1 | None | SRR10177262 | Sensitive | M.canetti | None | SRR26399426 | Sensitive | lineage2.2.1 | None | SRR6152813 | HR-TB | lineage2.2.1 | ca | SRR27450442 | HR-TB | lineage2.2.1 | None | ERR3597003 | Sensitive | M.canetti | None | SRR22175245 | Pre-XDR-TB | lineage2.2.1 | None | SRR25827430 | Pre-XDR-TB | lineage2.2.1;lineage4 | None | ERR4816381 | HR-TB | lineage2.2.1 | gb | SRR1735588 | Sensitive | lineage2.2.1 | None | ERR3597005 | Sensitive | M.canetti | None | SRR5065434 | Sensitive | lineage2.2.1 | vn | SRR5065601 | Sensitive | lineage2.2.1 | vn | SRR5065470 | RR-TB | lineage2.2.1 | vn | SRR5065530 | Sensitive | lineage2.2.1 | vn | SRR5067478 | Sensitive | lineage2.2.1 | vn | SRR24083658 | Sensitive | lineage2.2.1 | None | SRR5067251 | HR-TB | lineage2.2.1 | vn | SRR5067623 | HR-TB | lineage2.2.1 | vn | SRR5067340 | HR-TB | lineage2.2.1 | vn | SRR5067570 | Sensitive | lineage2.2.1 | vn | SRR5067595 | HR-TB | lineage2.2.1 | vn | SRR5073527 | HR-TB | lineage2.2.1 | vn | SRR5073920 | HR-TB | lineage2.2.1 | vn | SRR26400051 | Sensitive | lineage2.2.1 | None | ERR13278956 | MDR-TB | lineage2.2.1 | None | ERR1336822 | Sensitive | M.canetti | None | SRR5818614 | Sensitive | M.canetti | dj | DRR261155 | Sensitive | lineage2.2.1;lineage4.9 | None | ERR313115 | Sensitive | M.canetti | None | ERR313117 | Sensitive | M.canetti | None | ERR266125 | Other | M.canetti | None | ERR3597004 | Sensitive | M.canetti | None | ERR3597007 | Sensitive | M.canetti | None | SRR29217217 | Sensitive | lineage2.2.1 | None | SRR22179528 | Sensitive | M.canetti | None | SRR16058668 | Sensitive | M.canetti | None | ERR13439878 | HR-TB | lineage2.2.1 | None | ERR1336824 | Sensitive | La3;M.canetti | None | ERR551056 | Sensitive | M.canetti | None | ERR266110 | Other | M.canetti | None | ERR13285624 | HR-TB | lineage2.2.1 | None | ERR3275459 | Sensitive | lineage2.2.1 | nl | SRR10177259 | Other | M.canetti | None | ERR9892007 | Sensitive | lineage2.2.1 | None | ERR2446503 | Sensitive | lineage2.2.1 | nl | SRR22251066 | HR-TB | lineage2.2.1 | None | SRR26399349 | Sensitive | lineage2.2.1 | None | ERR11044961 | Sensitive | lineage2.2.1 | None | ERR2503439 | Sensitive | lineage2.2.1 | fi | SRR26399154 | Sensitive | lineage2.2.1 | None | SRR29681362 | HR-TB | lineage2.2.1 | None | SRR25827543 | XDR-TB | lineage2.2.1;lineage3 | None | SRR29690800 | Sensitive | lineage2.2.1 | None | ERR13266691 | Pre-XDR-TB | lineage2.2.1 | None | SRR8217888 | Sensitive | lineage2.2.1 | None | SRR125288 | Sensitive | lineage1.1.1.1;lineage2.2.1 | None | SRR18289196 | Sensitive | M.canetti | None | SRR18289195 | Sensitive | M.canetti | None | ERR551181 | Sensitive | M.canetti | None | SRR24083633 | Sensitive | lineage2.2.1 | None | SRR25827780 | XDR-TB | lineage2.2.1;lineage4.8 | None | ERR9119395 | Sensitive | lineage2.2.1 | None | ERR4828642 | HR-TB | lineage2.2.1 | None | SRR25534244 | Sensitive | lineage2.2.1 | None | SRR21732939 | Sensitive | lineage2.2.1 | None | ERR13260028 | MDR-TB | lineage2.2.1 | None | SRR26399864 | Other | lineage2.2.1 | None | ERR13290862 | Pre-XDR-TB | lineage2.2.1 | None | SRR5818676 | Other | M.canetti | dj | ERR13266634 | Other | lineage2.2.1 | None | SRR24061598 | Sensitive | M.canetti | None | SRR26399381 | Sensitive | lineage2.2.1 | None | ERR4798033 | MDR-TB | lineage2.2.1 | in | ERR4796509 | Pre-XDR-TB | lineage2.2.1 | in | SRR26399758 | Other | lineage2.2.1 | None | ERR4796389 | Pre-XDR-TB | lineage2.2.1 | in | ERR4797510 | Pre-XDR-TB | lineage2.2.1 | in | ERR4797898 | XDR-TB | lineage2.2.1 | in | SRR29881206 | Sensitive | lineage2.2.1 | None | SRR10177260 | Other | M.canetti | None | ERR4800497 | Pre-XDR-TB | lineage2.2.1 | in | ERR13291330 | Sensitive | lineage2.2.1 | None | SRR28170812 | Sensitive | M.canetti | None | ERR2446485 | Sensitive | lineage2.2.1 | nl | ERR4799440 | Pre-XDR-TB | lineage2.2.1 | in | ERR4796613 | Pre-XDR-TB | lineage2.2.1 | in | SRR22249833 | Other | lineage2.2.1 | None | ERR4798666 | Pre-XDR-TB | lineage2.2.1 | in | ERR13262158 | Pre-XDR-TB | lineage2.2.1 | None | SRR27450264 | Sensitive | lineage2.2.1 | None | SRR25827791 | Pre-XDR-TB | lineage2.2.1 | None | SAMEA6086630 | Sensitive | M.canetti | None | SAMEA2533665 | Sensitive | M.canetti | None | ERR1043163 | Other | La3;M.canetti | None | ERR7911508 | MDR-TB | lineage2.2.1 | vn | ERR7911516 | MDR-TB | lineage2.2.1 | vn | ERR7737809 | MDR-TB | lineage2.2.1 | None | ERR1336823 | Sensitive | La3;M.canetti | None | ERR2199835 | Other | lineage2.2.1 | de | ERR13266989 | MDR-TB | lineage2.2.1 | None | SRR26399871 | Other | lineage2.2.1 | None | SRR26399173 | HR-TB | lineage2.2.1 | None | ERR266126 | Sensitive | La2;M.canetti | None | SRR5065628 | Sensitive | lineage2.2.1 | vn | SRR5065674 | Sensitive | lineage2.2.1 | vn | SRR29050775 | Sensitive | lineage2.2.1 | None | SRR5065512 | Sensitive | lineage2.2.1 | vn | ERR13439894 | HR-TB | lineage2.2.1 | None | SRR5065669 | Sensitive | lineage2.2.1 | vn | SRR5067439 | MDR-TB | lineage2.2.1 | vn | SRR5067686 | HR-TB | lineage2.2.1 | vn | SRR5067706 | Sensitive | lineage2.2.1 | vn | SRR21732966 | Sensitive | lineage2.2.1 | None | SRR5067520 | HR-TB | lineage2.2.1 | vn | SRR5067316 | Sensitive | lineage2.2.1 | vn | SRR5067502 | Other | lineage2.2.1 | vn | SRR5067456 | Sensitive | lineage2.2.1 | vn | SRR5067462 | HR-TB | lineage2.2.1 | vn | SRR21677059 | Sensitive | lineage2.2.1 | None | SRR5067555 | Sensitive | lineage2.2.1 | vn | SRR5073568 | HR-TB | lineage2.2.1 | vn | SRR5073961 | Other | lineage2.2.1 | vn | SRR26936998 | MDR-TB | lineage2.2.1 | None | SRR5073878 | Sensitive | lineage2.2.1 | vn | SRR5073935 | MDR-TB | lineage2.2.1 | vn | SRR5073638 | HR-TB | lineage2.2.1 | vn | SRR5073712 | Sensitive | lineage2.2.1 | vn | SRR5073764 | MDR-TB | lineage2.2.1 | vn | SRR5073976 | Sensitive | lineage2.2.1 | vn | SRR5073563 | Sensitive | lineage2.2.1 | vn | SRR5073917 | Other | lineage2.2.1 | vn | SRR5073524 | Other | lineage2.2.1 | vn | SRR5073828 | Sensitive | lineage2.2.1 | vn | SRR5074185 | MDR-TB | lineage2.2.1 | vn | ERR9119252 | Sensitive | lineage2.2.1 | None | ERR9119443 | Sensitive | lineage2.2.1 | None | SRR26399909 | Sensitive | lineage2.2.1 | None | ERR4799472 | Pre-XDR-TB | lineage2.2.1 | in | ERR7737775 | MDR-TB | lineage2.2.1 | None | SRR125308 | Sensitive | lineage2.2.1 | None | SRR5818567 | Other | M.canetti | dj | SRR21277480 | Sensitive | lineage4.4 | None | ERR266107 | Other | M.canetti | None | ERR4831764 | MDR-TB | lineage2.2.1 | vn | ERR4830284 | HR-TB | lineage2.2.1 | vn | ERR4830375 | Sensitive | lineage2.2.1 | vn | ERR313116 | Sensitive | M.canetti | None | ERR313114 | Sensitive | M.canetti | None | ERR266124 | Other | M.canetti | None | ERR4815361 | Other | M.canetti | None | ERR313113 | Sensitive | M.canetti | None | SRR27450438 | Other | lineage2.2.1 | None | ERR3597001 | Sensitive | M.canetti | None | ERR3597002 | Sensitive | M.canetti | None | ERR3597006 | Sensitive | M.canetti | None | ERR11043130 | MDR-TB | lineage2.2.1 | None | ERR4817181 | Sensitive | M.canetti | None | ERR4819927 | Sensitive | M.canetti | None | ERR4821046 | Sensitive | M.canetti | None | ERR551182 | Sensitive | M.canetti | None | ERR551057 | Sensitive | M.canetti | None | ERR551179 | Sensitive | M.canetti | None | ERR552307 | Sensitive | M.canetti | None | ERR552304 | Sensitive | M.canetti | None | SRR10177261 | Sensitive | M.canetti | None | SRR22175213 | Pre-XDR-TB | lineage2.2.1 | None | SRR16058674 | Sensitive | M.canetti | None | ERR266108 | Sensitive | M.canetti | None | SRR29056248 | Sensitive | M.canetti | None | SRR5818685 | Sensitive | M.canetti | None | SRR6650709 | Sensitive | M.canetti | None | SRR25827747 | XDR-TB | lineage2.2.1;lineage3.1.2 | None | SRR1723800 | HR-TB | lineage2.2.1 | cn | SRR8217905 | Sensitive | lineage2.2.1 | None | ERR9119279 | HR-TB | lineage2.2.1 | None | ERR13266079 | Pre-XDR-TB | lineage2.2.1 | None | SRR30146986 | Sensitive | lineage2.2.1 | None | ERR13266671 | Pre-XDR-TB | lineage2.2.1 | None | ERR1336820 | Sensitive | La3;M.canetti | None | ERR13290874 | Pre-XDR-TB | lineage2.2.1 | None | SRR24083705 | Sensitive | lineage2.2.1 | None | SRR5065321 | Sensitive | lineage2.2.1 | None | SRR10177263 | Sensitive | M.canetti | None | SRR5818661 | Other | M.canetti | dj | SRR25827790 | XDR-TB | lineage2.2.1;lineage3 | None | ERR13261465 | Pre-XDR-TB | lineage2.2.1 | None | SRR30182660 | Sensitive | lineage2.2.1 | None | ERR1336821 | Sensitive | La3;M.canetti | None | ERR4796690 | Pre-XDR-TB | lineage2.2.1 | in | ERR4797975 | Pre-XDR-TB | lineage2.2.1 | in | SRR26399787 | Sensitive | lineage2.2.1 | None | SRR24083741 | Sensitive | lineage2.2.1 | None | ERR4797438 | Pre-XDR-TB | lineage2.2.1 | in | ERR4798816 | Pre-XDR-TB | lineage2.2.1;lineage3;lineage4.1.1.3;lineage4.9 | in | SRR26399870 | Sensitive | lineage2.2.1 | None | ERR4799148 | Pre-XDR-TB | lineage2.2.1 | in | ERR9119426 | Sensitive | lineage2.2.1 | None | SRR1735586 | Sensitive | lineage2.2.1 | None | ERR4799519 | Pre-XDR-TB | lineage2.2.1 | in | ERR1043164 | Other | La3;M.canetti | None | ERR4799011 | MDR-TB | lineage2.2.1 | in | SRR5818605 | Other | M.canetti | None | SRR29230860 | Sensitive | lineage2.2.1 | None | SRR26399743 | HR-TB | lineage2.2.1 | None | ERR4831225 | Sensitive | lineage2.2.1 | de | SAMEA2534556 | Sensitive | M.canetti | None | SAMEA2533757 | Sensitive | M.canetti | None | SRR125287 | Sensitive | lineage2.2.1 | None | SRR28351186 | Pre-XDR-TB | lineage2.2.1 | None |
|---|
