Rv0668 - c.1141C>T
Drug resistance types
53 Sensitive
3 RR-TB
31 HR-TB
28 MDR-TB
4 Pre-XDR-TB
1 XDR-TB
146 Other
lineage Counts
| lineage | Count |
|---|---|
| La3;M.canetti | 9 |
| lineage4.9 | 59 |
| lineage4.1.1.3;lineage4.9 | 2 |
| lineage2.2.1 | 15 |
| lineage3 | 3 |
| lineage2.1;lineage6.3 | 2 |
| La3;M.canetti;lineage2.2.1 | 1 |
| lineage2.1;lineage4.9;lineage6.3 | 10 |
| lineage2.1;lineage4.9 | 14 |
| M.canetti | 10 |
| lineage2.2.2 | 2 |
| lineage4.3.3 | 14 |
| lineage4.8 | 6 |
| lineage4.1.2.1 | 15 |
| lineage2.1 | 5 |
| lineage4 | 5 |
| lineage4.2.1 | 1 |
| La1.2.BCG;La1.8.1 | 1 |
| M.canetti;lineage4.9 | 1 |
| lineage2.2.1;lineage3 | 1 |
| lineage1;lineage4.9 | 1 |
| lineage4.3.4.2.1 | 4 |
| La3;lineage2.1;lineage4.9;lineage6.3 | 4 |
| lineage4.4.1.1 | 2 |
| lineage4.3.4.1 | 3 |
| M.canetti;lineage2.1;lineage4.9 | 2 |
| lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 | 1 |
| lineage1.1.2;lineage2.2.1;lineage4.2.2.2 | 1 |
| La3;lineage2.1;lineage4.9 | 2 |
| La3 | 2 |
| La3;lineage2.2.1 | 1 |
| lineage4.6.3;lineage4.9;lineage6.3 | 1 |
| lineage4.1.1.1 | 3 |
| 20 | |
| La3;lineage2.1;lineage6.3 | 1 |
| lineage4.9;lineage6.3 | 5 |
| lineage4.2.1.1;lineage4.3.3 | 1 |
| lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | 1 |
| La3;lineage4.9 | 2 |
| lineage4.7 | 1 |
| La3;lineage1.1.2 | 1 |
| La2;M.canetti | 1 |
| lineage4.2.2.2 | 1 |
| lineage4.1.2.1;lineage4.3.4.2.1 | 1 |
| La3;lineage4.3.4 | 1 |
| lineage4.5 | 1 |
| lineage2.1;lineage4.3.2;lineage4.9 | 1 |
| lineage3.1.1 | 1 |
| lineage1.2.2.2 | 1 |
| lineage4.1.3 | 2 |
| La3;lineage2 | 1 |
| lineage4.1.1.3 | 2 |
| lineage6.1.3 | 2 |
| lineage4.6.2.2 | 1 |
| lineage5.1.4 | 1 |
| M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | 1 |
| La3;lineage4.8 | 1 |
| lineage6.3.1 | 1 |
| lineage2.2.1;lineage4 | 1 |
| lineage1.1;lineage4 | 1 |
| lineage2.2.1;lineage6.3 | 1 |
| lineage4.3.2 | 1 |
| lineage4.1 | 1 |
| lineage4.8.1 | 1 |
| lineage4.1.2 | 1 |
| M.canetti;lineage2.1;lineage6.3 | 1 |
| lineage4.1;lineage4.9 | 1 |
| lineage1.1.1;lineage4 | 1 |
| lineage4.6.3;lineage4.9 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 266 |
Geographic prevalence
Country level data for this variant is available for 2 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR266125 | Other | La3;M.canetti | None | SRR1196583 | Other | lineage4.9 | None | SRR1175500 | Sensitive | lineage4.1.1.3;lineage4.9 | None | SRR3675275 | Other | lineage4.9 | None | SRR9971114 | Other | lineage2.2.1 | None | ERR4798493 | MDR-TB | lineage2.2.1 | None | ERR4800341 | HR-TB | lineage3 | None | ERR5336148 | Other | lineage2.1;lineage6.3 | None | ERR1336821 | Sensitive | La3;M.canetti | None | ERR502908 | HR-TB | lineage2.2.1 | None | SRR3675549 | Other | lineage4.9 | None | SRR6785413 | Other | lineage2.2.1 | None | SRR3742657 | Pre-XDR-TB | La3;M.canetti;lineage2.2.1 | None | ERR3283027 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR3675581 | Other | lineage2.1;lineage4.9 | None | SRR1184388 | Other | lineage2.1;lineage4.9 | None | SRR10522763 | Sensitive | M.canetti | None | ERR3797069 | Other | lineage4.9 | None | SRR18910194 | HR-TB | lineage2.2.2 | None | SRR19303884 | Other | lineage2.1;lineage6.3 | None | SRR1165277 | MDR-TB | lineage4.3.3 | None | ERR9992827 | MDR-TB | lineage4.3.3 | None | ERR9786569 | Other | lineage4.8 | None | ERR4821686 | Sensitive | lineage4.1.2.1 | None | SRR3675529 | Other | lineage2.1;lineage4.9;lineage6.3 | None | ERR702406 | Other | lineage2.1 | None | ERR1336824 | Sensitive | La3;M.canetti | None | SRR6046564 | Sensitive | lineage4.9 | None | SRR5341332 | Pre-XDR-TB | lineage3 | None | ERR3283044 | Other | lineage4 | None | ERR2512770 | Sensitive | lineage4.2.1 | None | ERR4818021 | Other | La1.2.BCG;La1.8.1 | None | SRR5341345 | Sensitive | lineage4.9 | None | ERR4811311 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR6045526 | Other | lineage4.9 | None | ERR736839 | HR-TB | M.canetti;lineage4.9 | None | SRR25827497 | XDR-TB | lineage2.2.1;lineage3 | None | SRR3675216 | Other | lineage2.1;lineage4.9 | None | SRR8552928 | HR-TB | lineage2.1;lineage4.9;lineage6.3 | None | ERR323043 | Other | lineage2.1;lineage4.9 | None | ERR4797350 | Sensitive | lineage1;lineage4.9 | None | SRR6789621 | Other | lineage4.9 | None | SRR12708399 | MDR-TB | lineage4.3.4.2.1 | None | SRR12708370 | Pre-XDR-TB | lineage2.2.2 | None | ERR4811142 | RR-TB | La3;lineage2.1;lineage4.9;lineage6.3 | None | ERR4811030 | Other | lineage4.9 | None | SRR3675248 | Other | lineage4.9 | None | SRR6785263 | Sensitive | lineage2.2.1 | None | ERR551182 | Sensitive | M.canetti | None | ERR2041725 | MDR-TB | lineage4.1.2.1 | None | SRR12708398 | Sensitive | lineage4.4.1.1 | None | ERR1336822 | Sensitive | M.canetti | None | SRR1165699 | Other | lineage4.9 | None | SRR12708384 | Sensitive | lineage4.9 | None | SRR3675541 | Sensitive | lineage4.9 | None | ERR4812155 | Other | lineage4.9 | None | SRR13583478 | HR-TB | lineage4.3.4.1 | None | ERR736859 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR11049020 | Other | lineage4.8 | None | ERR1334034 | Other | lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 | None | SRR25827452 | MDR-TB | lineage1.1.2;lineage2.2.1;lineage4.2.2.2 | None | SRR3675457 | Other | lineage4.9 | None | ERR473332 | Other | lineage4.9 | None | SRR6458423 | HR-TB | lineage2.2.1 | None | ERR736867 | Other | lineage2.1;lineage4.9 | None | SRR1175351 | MDR-TB | lineage4.3.3 | None | ERR1043163 | Other | La3;M.canetti | None | SRR6044819 | Sensitive | lineage4.9 | None | ERR4797054 | Pre-XDR-TB | lineage2.1 | None | SRR5341302 | Other | La3;lineage2.1;lineage4.9 | None | ERR2229542 | Other | lineage4.8 | None | SAMN02403512 | MDR-TB | lineage4.3.3 | za | SRR3416776 | Other | lineage2.1 | None | ERR4815752 | Other | lineage4.9 | None | SRR1172817 | Other | La3 | None | SRR26937071 | MDR-TB | La3;lineage2.2.1 | None | SRR3675574 | Other | lineage4.6.3;lineage4.9;lineage6.3 | None | SRR3675508 | MDR-TB | lineage2.1;lineage4.9;lineage6.3 | None | SRR12708419 | Other | lineage4.3.3 | None | SRR6045380 | Other | lineage2.1;lineage4.9 | None | SRR25827507 | MDR-TB | lineage4.1.1.1 | None | ERR9786617 | Other | lineage4.1.1.1 | None | ERR161037 | HR-TB | lineage4.9 | None | ERR11465279 | Sensitive | lineage4.3.4.1 | None | SRR3675572 | Other | None | ERR2514692 | Other | None | SRR18213713 | HR-TB | None | SRR25827682 | Other | None | ERR4407463 | HR-TB | None | ERR3597004 | Sensitive | M.canetti | None | ERR4810741 | HR-TB | La3;lineage2.1;lineage6.3 | None | SRR3675524 | Other | lineage4.9;lineage6.3 | None | ERR867542 | HR-TB | lineage4.2.1.1;lineage4.3.3 | None | ERR11465235 | Sensitive | lineage4.3.4.2.1 | None | ERR736874 | Other | La3;lineage2.1;lineage4.9 | None | SRR12416824 | HR-TB | lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | None | ERR4811022 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR26399973 | Other | La3;lineage4.9 | None | ERR4819932 | Other | lineage4.7 | None | ERR9117721 | HR-TB | La3;lineage1.1.2 | None | ERR176549 | Other | lineage4.3.4.2.1 | None | SRR6045242 | Other | lineage2.1;lineage4.9 | None | SRR3675473 | Sensitive | lineage4.9 | None | SRR3675214 | Other | lineage4.9 | None | SRR1167250 | MDR-TB | lineage4.3.3 | None | SRR6046245 | Other | lineage4.9 | None | ERR266126 | Other | La2;M.canetti | None | SRR10522783 | Sensitive | M.canetti | None | SRR3675465 | Other | lineage4.9;lineage6.3 | None | ERR4811105 | HR-TB | La3;lineage2.1;lineage4.9;lineage6.3 | None | ERR9786627 | Other | lineage4.1.2.1 | None | SRR12142341 | HR-TB | lineage2.1 | None | ERR3283019 | Other | lineage2.1;lineage4.9 | None | SRR5341333 | HR-TB | lineage2.1;lineage4.9 | None | ERR8976013 | MDR-TB | lineage4.3.3 | None | SRR3675232 | Other | lineage4.1.2.1 | None | ERR2027263 | Other | lineage4 | None | SRR1165327 | MDR-TB | lineage4.3.3 | None | SRR24061597 | Sensitive | M.canetti | None | ERR1336825 | Sensitive | La3;M.canetti | None | ERR4816559 | MDR-TB | lineage4.4.1.1 | None | SRR1173118 | Other | lineage2.2.1 | None | SRR26159043 | Other | lineage4.9 | None | ERR2513470 | Other | lineage4.2.2.2 | None | ERR11465234 | Sensitive | lineage4.1.2.1;lineage4.3.4.2.1 | None | ERR161039 | HR-TB | La3;lineage4.3.4 | None | ERR4811031 | Other | lineage4.5 | None | SRR6045327 | Other | lineage2.1;lineage4.3.2;lineage4.9 | None | ERR400336 | Sensitive | lineage4.9 | None | SRR3675580 | Sensitive | lineage4.9 | None | SRR3675477 | Sensitive | lineage4.9 | None | ERR400326 | Other | lineage4.9 | None | ERR553132 | MDR-TB | lineage4.1.2.1 | None | SRR1173156 | MDR-TB | lineage4.3.3 | None | ERR2041726 | MDR-TB | lineage4.1.2.1 | None | SRR3675318 | Other | lineage4.9 | None | SRR1196474 | Other | lineage3.1.1 | None | SRR5341323 | Sensitive | lineage4.9 | None | ERR176793 | Other | lineage4.1.1.1 | None | ERR4797285 | MDR-TB | lineage1.2.2.2 | None | SRR3675522 | Other | lineage4.9 | None | ERR181744 | HR-TB | La3;lineage4.9 | None | SRR3675221 | Other | lineage4.9 | None | SRR1172951 | Other | lineage4.9 | None | SRR1173532 | MDR-TB | lineage4.3.3 | None | ERR4814352 | Other | lineage2.2.1 | None | ERR4819781 | Other | lineage2.2.1 | None | ERR9786611 | HR-TB | lineage4.1.3 | None | ERR9786694 | Other | lineage4.1.2.1 | None | SRR3675514 | Sensitive | lineage4.9 | None | SRR6044790 | Other | lineage2.1;lineage4.9 | None | SRR20969677 | HR-TB | La3;lineage2 | None | SRR3675247 | Other | lineage4.9 | None | SRR1196546 | Other | lineage4.9 | None | ERR736871 | HR-TB | lineage2.1;lineage4.9;lineage6.3 | None | SRR3675517 | Other | La3;lineage2.1;lineage4.9;lineage6.3 | None | ERR11465024 | Other | lineage4.1.1.3 | None | ERR9787165 | Other | lineage6.1.3 | None | ERR9786601 | Other | lineage4.1.2.1 | None | ERR2446382 | Other | lineage4 | None | ERR1336826 | Sensitive | La3;M.canetti | None | ERR9786645 | Other | lineage4.6.2.2 | None | SRR1165667 | Other | lineage4.9;lineage6.3 | None | ERR11466146 | Other | lineage4.3.4.2.1 | None | ERR2513283 | Sensitive | lineage5.1.4 | None | SRR7131023 | Other | lineage4.1.2.1 | None | ERR551179 | Sensitive | M.canetti | None | SRR28119756 | Other | lineage4.9;lineage6.3 | None | SRR1184381 | MDR-TB | None | SRR18289195 | Sensitive | M.canetti | None | SRR1184372 | MDR-TB | None | ERR9117709 | Other | None | SRR6789626 | Other | None | SRR1196768 | MDR-TB | None | SRR12708416 | Sensitive | None | SRR28119777 | Other | lineage4.9 | None | ERR1035157 | Other | lineage4.9 | None | SRR6046611 | Sensitive | lineage4.9 | None | SRR12708418 | HR-TB | lineage2.2.1 | None | SRR3742665 | HR-TB | M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | None | SRR1184380 | Other | lineage2.1;lineage4.9 | None | ERR4817893 | Other | La3;lineage4.8 | None | SRR1175496 | Sensitive | lineage4.9 | None | ERR9787139 | Other | lineage6.3.1 | None | SRR1710057 | Other | lineage2.1 | None | ERR3275450 | Other | lineage4 | None | ERR9787336 | RR-TB | lineage6.1.3 | None | ERR4811075 | Other | lineage2.1;lineage4.9;lineage6.3 | None | ERR400320 | Sensitive | lineage4.9 | None | SRR1173629 | Other | lineage2.1;lineage4.9 | None | SRR20970043 | MDR-TB | lineage2.2.1 | None | ERR502943 | Sensitive | lineage2.2.1;lineage4 | None | SRR18003019 | Other | lineage2.2.1 | None | ERR11465025 | Other | lineage4.1.1.3 | None | ERR4817896 | HR-TB | lineage2.2.1 | None | ERR4819322 | Other | lineage1.1;lineage4 | None | SRR3675455 | Sensitive | lineage4.9 | None | ERR4799025 | Other | lineage4.8 | None | SRR1173403 | MDR-TB | lineage4.3.3 | None | SRR14782054 | Other | lineage4.9 | None | SRR1173778 | Other | lineage4.9 | None | SRR6046066 | Other | lineage4.9 | None | ERR266120 | Other | M.canetti | None | ERR400345 | Other | lineage4.9 | None | SRR28119811 | Other | lineage2.2.1;lineage6.3 | None | ERR3804169 | HR-TB | lineage4.1.3 | None | SRR1173400 | Other | lineage4.9 | None | SRR1175508 | Sensitive | lineage4.9 | None | SRR7496472 | Other | lineage4.9 | None | ERR4820854 | Other | lineage4.1.2.1 | None | ERR2514552 | Sensitive | lineage3 | None | SRR6046540 | Other | lineage2.1;lineage4.9 | None | ERR9117805 | Other | lineage4.3.2 | None | ERR3797070 | Other | lineage4.9 | None | SRR3675467 | Other | lineage2.1;lineage4.9;lineage6.3 | None | ERR551180 | Sensitive | M.canetti | None | SRR1184294 | Other | lineage4.9 | None | ERR1336823 | Sensitive | La3;M.canetti | None | ERR9786421 | Other | lineage4.1.2.1 | None | SRR1196566 | Other | lineage4.9 | None | ERR1336820 | Sensitive | La3;M.canetti | None | SRR21732980 | Other | lineage4.3.3 | None | ERR11466174 | Other | lineage4.8 | None | SRR12708409 | HR-TB | lineage4.3.3 | None | SRR3675387 | Other | lineage4.9 | None | SRR1172728 | RR-TB | La3 | None | SRR5341296 | Sensitive | lineage4.9 | None | ERR11465232 | Sensitive | lineage4.1.2.1 | None | ERR3804155 | Other | lineage4.1.2.1 | None | SRR3675229 | Sensitive | lineage4.9 | None | ERR3283036 | Other | lineage2.1;lineage4.9 | None | SRR12708372 | Sensitive | lineage4.9 | None | SRR5341437 | Sensitive | lineage4.9 | None | ERR4797313 | Sensitive | lineage2.2.1 | None | SRR14782405 | HR-TB | lineage4.9 | None | ERR9786440 | Other | lineage4.1 | None | ERR11466499 | Other | lineage4.3.4.1 | None | ERR702404 | HR-TB | lineage2.1;lineage4.9;lineage6.3 | None | ERR11081258 | Other | lineage4.8 | None | SRR12708389 | MDR-TB | lineage4.8.1 | None | SAMN02403513 | MDR-TB | lineage4.3.3 | za | ERR4818347 | Other | lineage4.1.2 | None | ERR502532 | Other | M.canetti;lineage2.1;lineage6.3 | None | ERR1043164 | Other | La3;M.canetti | None | ERR2517475 | Other | lineage4 | None | SRR3675490 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR3675311 | Other | lineage4.9 | None | SRR12708374 | Sensitive | lineage4.1;lineage4.9 | None | ERR4831638 | Sensitive | lineage1.1.1;lineage4 | None | SRR2010299 | MDR-TB | lineage2.2.1 | None | SRR1175507 | Sensitive | lineage4.1.1.3;lineage4.9 | None | SRR19304036 | Other | La3;lineage2.1;lineage4.9;lineage6.3 | None | ERR9786682 | Other | lineage4.1.2.1 | None | ERR9786642 | Other | lineage4.1.2.1 | None | SRR7496509 | Other | None | ERR9786671 | Other | None | SRR1175074 | Other | None | SRR28119717 | Other | lineage4.9;lineage6.3 | None | ERR9786604 | Other | None | ERR11252558 | Other | lineage4.6.3;lineage4.9 | None | SRR1173363 | Other | None | ERR4815604 | Other | None | ERR9787197 | Other | None | SRR3675236 | Other | None | SRR28119805 | Other | lineage4.9 | None | ERR4816999 | Other | None |
|---|
