Run ID: SRR6785413
Sample name:
Date: 04-04-2023 15:53:07
Number of reads: 2683619
Percentage reads mapped: 82.94
Strain: lineage2.2.1
Drug-resistance: Other
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage2 | East-Asian | Beijing | RD105 | 0.99 |
lineage2.2 | East-Asian (Beijing) | Beijing-RD207 | RD105;RD207 | 0.97 |
lineage2.2.1 | East-Asian (Beijing) | Beijing-RD181 | RD105;RD207;RD181 | 0.99 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|---|---|---|---|---|
rpsL | 781822 | p.Lys88Arg | missense_variant | 0.78 | streptomycin |
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrB | 6256 | c.1017G>A | synonymous_variant | 0.15 |
gyrB | 6268 | c.1029C>G | synonymous_variant | 0.17 |
gyrB | 6280 | c.1041T>C | synonymous_variant | 0.13 |
gyrA | 6616 | c.-686A>G | upstream_gene_variant | 0.15 |
gyrA | 6622 | c.-680C>T | upstream_gene_variant | 0.16 |
gyrA | 6634 | c.-668T>C | upstream_gene_variant | 0.19 |
gyrA | 6637 | c.-665T>G | upstream_gene_variant | 0.19 |
gyrA | 6640 | c.-662A>G | upstream_gene_variant | 0.21 |
gyrA | 6649 | c.-653T>C | upstream_gene_variant | 0.22 |
gyrA | 6655 | c.-647T>C | upstream_gene_variant | 0.22 |
gyrA | 6670 | c.-632G>C | upstream_gene_variant | 0.22 |
gyrA | 6673 | c.-629A>C | upstream_gene_variant | 0.23 |
gyrA | 6676 | c.-626T>G | upstream_gene_variant | 0.23 |
gyrA | 6700 | c.-602T>C | upstream_gene_variant | 0.2 |
gyrA | 6703 | c.-599G>C | upstream_gene_variant | 0.19 |
gyrA | 6709 | c.-593A>G | upstream_gene_variant | 0.19 |
gyrA | 6712 | c.-590G>C | upstream_gene_variant | 0.18 |
gyrA | 6728 | c.-574_-572delCTAinsTTG | upstream_gene_variant | 0.15 |
gyrA | 7007 | c.-295C>T | upstream_gene_variant | 0.16 |
gyrA | 7010 | c.-292C>T | upstream_gene_variant | 0.16 |
gyrB | 7023 | p.Leu595Gln | missense_variant | 0.14 |
gyrA | 7033 | c.-269G>C | upstream_gene_variant | 0.19 |
gyrB | 7051 | p.Glu604Asp | missense_variant | 0.2 |
gyrA | 7066 | c.-236G>C | upstream_gene_variant | 0.16 |
gyrA | 7078 | c.-224A>C | upstream_gene_variant | 0.14 |
gyrA | 7084 | c.-218A>G | upstream_gene_variant | 0.15 |
gyrA | 7090 | c.-212C>T | upstream_gene_variant | 0.16 |
gyrA | 7093 | c.-209T>G | upstream_gene_variant | 0.14 |
gyrA | 7099 | c.-203G>A | upstream_gene_variant | 0.14 |
gyrA | 7108 | c.-194G>A | upstream_gene_variant | 0.18 |
gyrA | 7114 | c.-188C>A | upstream_gene_variant | 0.18 |
gyrB | 7124 | p.Ser629Thr | missense_variant | 0.17 |
gyrA | 7129 | c.-173T>C | upstream_gene_variant | 0.15 |
gyrA | 7132 | c.-170T>G | upstream_gene_variant | 0.17 |
gyrA | 7141 | c.-161T>C | upstream_gene_variant | 0.17 |
gyrA | 7165 | c.-137C>G | upstream_gene_variant | 0.13 |
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7442 | c.141G>C | synonymous_variant | 0.14 |
gyrA | 7451 | c.150C>G | synonymous_variant | 0.15 |
gyrA | 7457 | c.156T>C | synonymous_variant | 0.14 |
gyrA | 7547 | c.246C>T | synonymous_variant | 0.13 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 7637 | c.336C>G | synonymous_variant | 0.14 |
gyrA | 7664 | c.363T>C | synonymous_variant | 0.15 |
gyrA | 7670 | c.369A>G | synonymous_variant | 0.15 |
gyrA | 8619 | c.1318T>C | synonymous_variant | 0.15 |
gyrA | 8624 | c.1323G>C | synonymous_variant | 0.15 |
gyrA | 8636 | c.1335A>C | synonymous_variant | 0.16 |
gyrA | 8642 | c.1341A>G | synonymous_variant | 0.17 |
gyrA | 8678 | c.1377G>A | synonymous_variant | 0.13 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
fgd1 | 491173 | c.391C>A | synonymous_variant | 0.14 |
fgd1 | 491191 | p.Gly137Arg | missense_variant | 0.14 |
fgd1 | 491232 | c.450T>C | synonymous_variant | 0.17 |
fgd1 | 491241 | p.Asp153Glu | missense_variant | 0.19 |
fgd1 | 491244 | c.462T>C | synonymous_variant | 0.18 |
fgd1 | 491259 | c.477T>C | synonymous_variant | 0.18 |
fgd1 | 491283 | p.Asp167Glu | missense_variant | 0.15 |
fgd1 | 491742 | c.960T>C | synonymous_variant | 0.98 |
mshA | 575907 | p.Ala187Val | missense_variant | 0.9 |
ccsA | 620625 | p.Ile245Met | missense_variant | 1.0 |
rpoB | 760196 | c.390C>G | synonymous_variant | 0.14 |
rpoB | 760223 | c.417T>C | synonymous_variant | 0.15 |
rpoB | 760235 | c.429T>C | synonymous_variant | 0.15 |
rpoB | 760298 | c.492G>C | synonymous_variant | 0.14 |
rpoB | 760307 | c.501T>C | synonymous_variant | 0.15 |
rpoB | 760310 | c.504G>C | synonymous_variant | 0.15 |
rpoB | 760331 | c.525G>C | synonymous_variant | 0.14 |
rpoB | 760340 | c.534G>T | synonymous_variant | 0.16 |
rpoB | 760361 | c.555T>C | synonymous_variant | 0.15 |
rpoB | 760370 | c.564C>G | synonymous_variant | 0.14 |
rpoB | 760611 | c.805T>C | synonymous_variant | 0.13 |
rpoB | 760982 | c.1176G>C | synonymous_variant | 0.14 |
rpoB | 760985 | c.1179G>C | synonymous_variant | 0.14 |
rpoB | 760991 | c.1185G>C | synonymous_variant | 0.17 |
rpoB | 761006 | c.1200C>G | synonymous_variant | 0.19 |
rpoB | 761015 | c.1209G>C | synonymous_variant | 0.2 |
rpoB | 761021 | c.1215G>C | synonymous_variant | 0.2 |
rpoB | 761027 | c.1221A>G | synonymous_variant | 0.21 |
rpoB | 761036 | c.1230G>C | synonymous_variant | 0.2 |
rpoB | 761037 | c.1231T>C | synonymous_variant | 0.2 |
rpoB | 761057 | c.1251G>C | synonymous_variant | 0.19 |
rpoB | 761102 | c.1296A>G | synonymous_variant | 0.16 |
rpoB | 761129 | c.1323G>C | synonymous_variant | 0.15 |
rpoB | 761132 | c.1326G>T | synonymous_variant | 0.14 |
rpoB | 761133 | c.1327T>C | synonymous_variant | 0.14 |
rpoB | 761180 | c.1374A>C | synonymous_variant | 0.17 |
rpoB | 761189 | c.1383T>C | synonymous_variant | 0.17 |
rpoB | 761195 | c.1389G>C | synonymous_variant | 0.15 |
rpoB | 761207 | c.1401C>T | synonymous_variant | 0.15 |
rpoB | 761213 | c.1407G>C | synonymous_variant | 0.15 |
rpoB | 761219 | c.1413G>C | synonymous_variant | 0.15 |
rpoB | 761249 | c.1443A>G | synonymous_variant | 0.18 |
rpoB | 761255 | c.1449T>G | synonymous_variant | 0.18 |
rpoB | 761261 | c.1455G>T | synonymous_variant | 0.18 |
rpoB | 761306 | c.1500C>G | synonymous_variant | 0.17 |
rpoB | 761573 | c.1767C>G | synonymous_variant | 0.14 |
rpoC | 762989 | c.-381G>C | upstream_gene_variant | 0.14 |
rpoC | 762995 | c.-375G>T | upstream_gene_variant | 0.15 |
rpoC | 763013 | c.-357C>G | upstream_gene_variant | 0.18 |
rpoC | 763025 | c.-345C>T | upstream_gene_variant | 0.13 |
rpoC | 763028 | c.-342T>C | upstream_gene_variant | 0.19 |
rpoC | 763031 | c.-339T>C | upstream_gene_variant | 0.98 |
rpoC | 763034 | c.-336C>G | upstream_gene_variant | 0.19 |
rpoC | 763040 | c.-330C>G | upstream_gene_variant | 0.21 |
rpoC | 763070 | c.-300T>C | upstream_gene_variant | 0.24 |
rpoC | 763085 | c.-285C>G | upstream_gene_variant | 0.19 |
rpoC | 763115 | c.-255T>C | upstream_gene_variant | 0.18 |
rpoC | 763136 | c.-234C>T | upstream_gene_variant | 0.17 |
rpoC | 763148 | c.-222G>C | upstream_gene_variant | 0.15 |
rpoC | 763158 | c.-212C>T | upstream_gene_variant | 0.15 |
rpoC | 763402 | c.33C>G | synonymous_variant | 0.14 |
rpoC | 763411 | c.42T>G | synonymous_variant | 0.15 |
rpoC | 763414 | c.45T>C | synonymous_variant | 0.15 |
rpoC | 763441 | c.72C>T | synonymous_variant | 0.22 |
rpoC | 763444 | c.75T>C | synonymous_variant | 0.22 |
rpoC | 763456 | c.87A>G | synonymous_variant | 0.22 |
rpoC | 763486 | c.117T>G | synonymous_variant | 0.26 |
rpoC | 763528 | c.159G>A | synonymous_variant | 0.25 |
rpoC | 763546 | c.177A>G | synonymous_variant | 0.22 |
rpoC | 763570 | c.201G>C | synonymous_variant | 0.27 |
rpoC | 763573 | c.204G>C | synonymous_variant | 0.28 |
rpoC | 763594 | c.225C>T | synonymous_variant | 0.25 |
rpoC | 763603 | c.234C>T | synonymous_variant | 0.25 |
rpoC | 763636 | c.267T>C | synonymous_variant | 0.28 |
rpoC | 763660 | c.291T>G | synonymous_variant | 0.33 |
rpoC | 763675 | c.306C>G | synonymous_variant | 0.3 |
rpoC | 763696 | c.327T>C | synonymous_variant | 0.34 |
rpoC | 763702 | c.333C>G | synonymous_variant | 0.33 |
rpoC | 763717 | c.348T>C | synonymous_variant | 0.28 |
rpoC | 763723 | c.354G>C | synonymous_variant | 0.27 |
rpoC | 763732 | c.363C>G | synonymous_variant | 0.27 |
rpoC | 763741 | c.372C>T | synonymous_variant | 0.25 |
rpoC | 763744 | c.375G>C | synonymous_variant | 0.26 |
rpoC | 763765 | c.396T>C | synonymous_variant | 0.24 |
rpoC | 763774 | c.405G>C | synonymous_variant | 0.24 |
rpoC | 763807 | c.438T>C | synonymous_variant | 0.23 |
rpoC | 763816 | c.447C>G | synonymous_variant | 0.21 |
rpoC | 763835 | p.Ala156Met | missense_variant | 0.22 |
rpoC | 763853 | p.Val162Ile | missense_variant | 0.23 |
rpoC | 763858 | c.489A>G | synonymous_variant | 0.2 |
rpoC | 763872 | p.Gly168Ala | missense_variant | 0.2 |
rpoC | 763876 | p.Glu169Asp | missense_variant | 0.2 |
rpoC | 763879 | c.510A>G | synonymous_variant | 0.18 |
rpoC | 763888 | c.519G>C | synonymous_variant | 0.21 |
rpoC | 763891 | c.522G>C | synonymous_variant | 0.22 |
rpoC | 763894 | c.525A>G | synonymous_variant | 0.21 |
rpoC | 763900 | c.531G>C | synonymous_variant | 0.22 |
rpoC | 763936 | c.567C>G | synonymous_variant | 0.17 |
rpoC | 763939 | c.570G>A | synonymous_variant | 0.14 |
rpoC | 763942 | c.573C>G | synonymous_variant | 0.14 |
rpoC | 763948 | c.579G>A | synonymous_variant | 0.13 |
rpoC | 763949 | c.580C>A | synonymous_variant | 0.14 |
rpoC | 763954 | c.585C>G | synonymous_variant | 0.14 |
rpoC | 764257 | c.888G>C | synonymous_variant | 0.15 |
rpoC | 764266 | c.897T>C | synonymous_variant | 0.15 |
rpoC | 764269 | c.900G>C | synonymous_variant | 0.16 |
rpoC | 764272 | c.903G>C | synonymous_variant | 0.17 |
rpoC | 764278 | c.909A>G | synonymous_variant | 0.16 |
rpoC | 764338 | c.969G>A | synonymous_variant | 0.15 |
rpoC | 764353 | c.984G>C | synonymous_variant | 0.19 |
rpoC | 764365 | c.996C>T | synonymous_variant | 0.17 |
rpoC | 764380 | c.1011G>C | synonymous_variant | 0.16 |
rpoC | 764381 | c.1012_1013delTCinsAG | synonymous_variant | 0.16 |
rpoC | 764387 | c.1018_1020delTTGinsCTC | synonymous_variant | 0.17 |
rpoC | 764405 | c.1036A>C | synonymous_variant | 0.14 |
rpoC | 764419 | c.1050C>G | synonymous_variant | 0.13 |
rpoC | 764428 | c.1059G>C | synonymous_variant | 0.14 |
rpoC | 764431 | c.1062G>C | synonymous_variant | 0.14 |
rpoC | 764434 | c.1065A>G | synonymous_variant | 0.15 |
rpoC | 764446 | c.1077T>C | synonymous_variant | 0.18 |
rpoC | 764449 | c.1080G>C | synonymous_variant | 0.17 |
rpoC | 764452 | c.1083T>C | synonymous_variant | 0.17 |
rpoC | 764458 | c.1089G>C | synonymous_variant | 0.18 |
rpoC | 764461 | c.1092A>G | synonymous_variant | 0.18 |
rpoC | 764489 | c.1120C>T | synonymous_variant | 0.17 |
rpoC | 764510 | c.1141C>T | synonymous_variant | 0.16 |
rpoC | 764521 | c.1152T>C | synonymous_variant | 0.16 |
rpoC | 764527 | c.1158C>T | synonymous_variant | 0.18 |
rpoC | 764536 | c.1167G>C | synonymous_variant | 0.18 |
rpoC | 764539 | c.1170C>G | synonymous_variant | 0.17 |
rpoC | 764554 | c.1185C>T | synonymous_variant | 0.19 |
rpoC | 764560 | c.1191T>C | synonymous_variant | 0.22 |
rpoC | 764566 | c.1197C>G | synonymous_variant | 0.21 |
rpoC | 764575 | c.1206T>G | synonymous_variant | 0.21 |
rpoC | 764581 | c.1212T>C | synonymous_variant | 0.22 |
rpoC | 764593 | c.1224C>T | synonymous_variant | 0.22 |
rpoC | 764611 | c.1242G>T | synonymous_variant | 0.21 |
rpoC | 764650 | c.1281G>C | synonymous_variant | 0.17 |
rpoC | 764651 | c.1282_1284delTCGinsAGC | synonymous_variant | 0.17 |
rpoC | 764858 | c.1489T>C | synonymous_variant | 0.17 |
rpoC | 764872 | c.1503A>G | synonymous_variant | 0.17 |
rpoC | 764888 | c.1519T>C | synonymous_variant | 0.16 |
rpoC | 764932 | c.1563C>A | synonymous_variant | 0.14 |
rpoC | 764935 | c.1566T>C | synonymous_variant | 0.14 |
rpoC | 764948 | c.1579T>C | synonymous_variant | 0.16 |
rpoC | 764968 | c.1599T>C | synonymous_variant | 0.17 |
rpoC | 764995 | c.1626C>G | synonymous_variant | 0.16 |
rpoC | 765019 | c.1650A>G | synonymous_variant | 0.16 |
rpoC | 765034 | c.1665T>C | synonymous_variant | 0.15 |
rpoC | 765040 | c.1671T>C | synonymous_variant | 0.17 |
rpoC | 765047 | c.1678T>C | synonymous_variant | 0.14 |
rpoC | 765053 | c.1684_1685delTCinsAG | synonymous_variant | 0.15 |
rpoC | 765404 | p.Leu679Val | missense_variant | 0.14 |
rpoC | 765409 | c.2040T>C | synonymous_variant | 0.16 |
rpoC | 765421 | c.2052C>G | synonymous_variant | 0.15 |
rpoC | 766021 | c.2652G>C | synonymous_variant | 0.13 |
rpoC | 766027 | c.2658G>C | synonymous_variant | 0.13 |
rpoC | 766054 | c.2685C>G | synonymous_variant | 0.14 |
rpoC | 766522 | c.3153C>G | synonymous_variant | 0.16 |
rpoC | 766528 | c.3159T>C | synonymous_variant | 0.17 |
rpoC | 766531 | c.3162G>C | synonymous_variant | 0.17 |
rpoC | 766540 | p.Asp1057Glu | missense_variant | 0.16 |
rpoC | 766573 | c.3204T>C | synonymous_variant | 0.17 |
rpoC | 766582 | c.3213C>G | synonymous_variant | 0.15 |
rpoC | 766583 | p.Gly1072Ser | missense_variant | 0.15 |
rpoC | 766591 | c.3222A>G | synonymous_variant | 0.15 |
rpoC | 766594 | c.3225G>C | synonymous_variant | 0.15 |
rpoC | 766597 | c.3228C>G | synonymous_variant | 0.14 |
rpoC | 766607 | p.Ile1080Leu | missense_variant | 0.18 |
rpoC | 766630 | c.3261G>C | synonymous_variant | 0.22 |
rpoC | 766645 | p.Glu1092Asp | missense_variant | 0.87 |
rpoC | 766726 | c.3357T>C | synonymous_variant | 0.18 |
rpoC | 766738 | c.3369G>C | synonymous_variant | 0.22 |
rpoC | 766765 | c.3396A>C | synonymous_variant | 0.24 |
rpoC | 766774 | c.3405T>C | synonymous_variant | 0.24 |
rpoC | 766801 | c.3432C>G | synonymous_variant | 0.19 |
rpoC | 766804 | c.3435A>G | synonymous_variant | 0.19 |
rpoC | 766861 | c.3492G>C | synonymous_variant | 0.21 |
rpoC | 766864 | c.3495G>C | synonymous_variant | 0.22 |
rpoC | 766894 | c.3525T>C | synonymous_variant | 0.22 |
rpoC | 766900 | c.3531T>C | synonymous_variant | 0.23 |
rpoC | 766933 | c.3564A>G | synonymous_variant | 0.25 |
rpoC | 766945 | c.3576A>G | synonymous_variant | 0.24 |
rpoC | 766963 | c.3594T>C | synonymous_variant | 0.19 |
rpoC | 766972 | c.3603G>C | synonymous_variant | 0.21 |
rpoC | 766996 | c.3627C>T | synonymous_variant | 0.15 |
rpoC | 767033 | p.Ser1222Arg | missense_variant | 0.16 |
rpoC | 767059 | c.3690T>G | synonymous_variant | 0.17 |
rpoC | 767062 | c.3693C>A | synonymous_variant | 0.16 |
rpoC | 767098 | c.3729T>C | synonymous_variant | 0.14 |
rpoC | 767119 | c.3750A>G | synonymous_variant | 0.14 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
mmpL5 | 775981 | p.Leu834Met | missense_variant | 0.14 |
mmpL5 | 776009 | c.2472A>G | synonymous_variant | 0.16 |
mmpL5 | 776100 | p.Thr794Ile | missense_variant | 0.98 |
mmpL5 | 776182 | p.Asp767Asn | missense_variant | 0.98 |
mmpS5 | 779615 | c.-710C>G | upstream_gene_variant | 0.96 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
rpsL | 781808 | c.249C>T | synonymous_variant | 0.17 |
rpsL | 781811 | c.252C>T | synonymous_variant | 0.17 |
rpsL | 781832 | c.273T>C | synonymous_variant | 0.16 |
rpsL | 781838 | c.279G>C | synonymous_variant | 0.16 |
rpsL | 781841 | c.282C>G | synonymous_variant | 0.17 |
rpsL | 781929 | p.Gly124Ser | missense_variant | 0.13 |
fbiC | 1303695 | c.765T>C | synonymous_variant | 0.14 |
fbiC | 1304916 | c.1986T>C | synonymous_variant | 0.15 |
fbiC | 1304928 | c.1998T>C | synonymous_variant | 0.16 |
fbiC | 1304937 | c.2007G>C | synonymous_variant | 0.17 |
Rv1258c | 1406760 | c.580_581insC | frameshift_variant | 0.97 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrs | 1473290 | n.1445C>T | non_coding_transcript_exon_variant | 0.16 |
rrl | 1473877 | n.220G>A | non_coding_transcript_exon_variant | 0.16 |
rrl | 1473898 | n.241C>T | non_coding_transcript_exon_variant | 0.22 |
rrl | 1473899 | n.242A>C | non_coding_transcript_exon_variant | 0.22 |
rrl | 1473943 | n.286G>T | non_coding_transcript_exon_variant | 0.19 |
rrl | 1474639 | n.982G>A | non_coding_transcript_exon_variant | 0.16 |
rrl | 1474794 | n.1137C>T | non_coding_transcript_exon_variant | 0.19 |
rrl | 1474812 | n.1155G>A | non_coding_transcript_exon_variant | 0.18 |
rrl | 1474970 | n.1313G>A | non_coding_transcript_exon_variant | 0.13 |
rrl | 1475199 | n.1542G>A | non_coding_transcript_exon_variant | 0.19 |
rrl | 1475206 | n.1549C>T | non_coding_transcript_exon_variant | 0.19 |
rrl | 1475209 | n.1552G>C | non_coding_transcript_exon_variant | 0.16 |
rrl | 1475213 | n.1556C>T | non_coding_transcript_exon_variant | 0.16 |
rrl | 1475249 | n.1592T>C | non_coding_transcript_exon_variant | 0.14 |
rrl | 1475252 | n.1595C>T | non_coding_transcript_exon_variant | 0.13 |
rrl | 1475369 | n.1712G>T | non_coding_transcript_exon_variant | 0.15 |
rrl | 1475402 | n.1745C>T | non_coding_transcript_exon_variant | 0.19 |
rrl | 1475419 | n.1762C>T | non_coding_transcript_exon_variant | 0.13 |
rrl | 1475483 | n.1826C>T | non_coding_transcript_exon_variant | 0.15 |
rrl | 1475599 | n.1942A>G | non_coding_transcript_exon_variant | 0.16 |
rrl | 1475608 | n.1951T>C | non_coding_transcript_exon_variant | 0.16 |
rrl | 1475638 | n.1981C>T | non_coding_transcript_exon_variant | 0.19 |
rrl | 1475642 | n.1985T>C | non_coding_transcript_exon_variant | 0.19 |
rrl | 1475657 | n.2000A>G | non_coding_transcript_exon_variant | 0.21 |
rrl | 1475659 | n.2002G>T | non_coding_transcript_exon_variant | 0.22 |
rrl | 1476214 | n.2557G>A | non_coding_transcript_exon_variant | 0.17 |
rrl | 1476224 | n.2567A>G | non_coding_transcript_exon_variant | 0.17 |
rrl | 1476281 | n.2624T>C | non_coding_transcript_exon_variant | 0.2 |
rpsA | 1833724 | c.183C>G | synonymous_variant | 0.13 |
rpsA | 1833742 | c.201A>G | synonymous_variant | 0.15 |
rpsA | 1833745 | c.204G>C | synonymous_variant | 0.15 |
rpsA | 1833748 | c.207C>G | synonymous_variant | 0.16 |
rpsA | 1833787 | c.246C>G | synonymous_variant | 0.14 |
rpsA | 1833790 | c.249T>C | synonymous_variant | 0.14 |
rpsA | 1833874 | c.333T>C | synonymous_variant | 0.15 |
rpsA | 1833886 | c.345C>G | synonymous_variant | 0.15 |
rpsA | 1833971 | c.430C>T | synonymous_variant | 0.14 |
rpsA | 1833979 | c.438T>C | synonymous_variant | 0.14 |
rpsA | 1834000 | c.459G>C | synonymous_variant | 0.14 |
rpsA | 1834021 | c.480C>T | synonymous_variant | 0.15 |
rpsA | 1834030 | c.489C>G | synonymous_variant | 0.16 |
rpsA | 1834081 | c.540C>T | synonymous_variant | 0.13 |
rpsA | 1834177 | c.636A>C | synonymous_variant | 0.98 |
rpsA | 1834348 | c.807T>C | synonymous_variant | 0.14 |
rpsA | 1834366 | c.825A>G | synonymous_variant | 0.14 |
rpsA | 1834396 | c.855G>C | synonymous_variant | 0.17 |
rpsA | 1834411 | c.870T>C | synonymous_variant | 0.18 |
rpsA | 1834417 | c.876G>C | synonymous_variant | 0.19 |
rpsA | 1834423 | c.882G>C | synonymous_variant | 0.19 |
rpsA | 1834435 | c.894G>C | synonymous_variant | 0.17 |
rpsA | 1834451 | c.910T>C | synonymous_variant | 0.14 |
rpsA | 1834465 | c.924T>C | synonymous_variant | 0.15 |
rpsA | 1834468 | c.927A>G | synonymous_variant | 0.15 |
rpsA | 1834489 | c.948T>C | synonymous_variant | 0.13 |
rpsA | 1834528 | c.987T>C | synonymous_variant | 0.14 |
rpsA | 1834540 | c.999G>C | synonymous_variant | 0.15 |
rpsA | 1834546 | c.1005T>C | synonymous_variant | 0.15 |
rpsA | 1834609 | c.1068T>C | synonymous_variant | 0.21 |
rpsA | 1834618 | c.1077G>C | synonymous_variant | 0.17 |
rpsA | 1834633 | c.1092A>G | synonymous_variant | 0.2 |
rpsA | 1834639 | c.1098T>C | synonymous_variant | 0.2 |
rpsA | 1834654 | p.Glu371Asp | missense_variant | 0.25 |
rpsA | 1834690 | c.1149T>C | synonymous_variant | 0.22 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
katG | 2154724 | p.Arg463Leu | missense_variant | 0.99 |
PPE35 | 2167926 | p.Leu896Ser | missense_variant | 1.0 |
PPE35 | 2169902 | c.711G>C | synonymous_variant | 0.13 |
PPE35 | 2169910 | p.Asn235Tyr | missense_variant | 0.14 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
thyX | 3067391 | c.555G>C | synonymous_variant | 0.14 |
thyX | 3067394 | c.552G>C | synonymous_variant | 0.18 |
thyX | 3067439 | c.507A>G | synonymous_variant | 0.22 |
thyX | 3067445 | c.501C>G | synonymous_variant | 0.21 |
thyX | 3067457 | c.489C>G | synonymous_variant | 0.21 |
thyX | 3067465 | p.Ile161Val | missense_variant | 0.2 |
thyX | 3067475 | c.471A>G | synonymous_variant | 0.2 |
thyX | 3067490 | c.456C>G | synonymous_variant | 0.19 |
thyX | 3067493 | c.453A>G | synonymous_variant | 0.2 |
thyX | 3067515 | p.Ser144Thr | missense_variant | 0.23 |
thyX | 3067530 | p.Ala139Ser | missense_variant | 0.2 |
thyX | 3067545 | p.Glu134Ala | missense_variant | 0.2 |
thyX | 3067549 | p.Thr133Ala | missense_variant | 0.2 |
thyX | 3067556 | p.His130Gln | missense_variant | 0.2 |
thyX | 3067559 | c.387C>G | synonymous_variant | 0.22 |
thyX | 3067565 | p.Asp127Glu | missense_variant | 0.22 |
thyX | 3067570 | p.Ala126Pro | missense_variant | 0.22 |
thyX | 3067577 | c.369G>A | synonymous_variant | 0.18 |
thyX | 3067583 | c.363C>G | synonymous_variant | 0.21 |
thyX | 3067601 | p.Arg115His | missense_variant | 0.2 |
thyX | 3067611 | p.Lys112Thr | missense_variant | 0.22 |
thyX | 3067619 | c.327A>C | synonymous_variant | 0.23 |
thyX | 3067631 | c.315C>G | synonymous_variant | 0.23 |
thyX | 3067634 | c.312C>G | synonymous_variant | 0.24 |
thyX | 3067652 | c.294T>C | synonymous_variant | 0.18 |
thyX | 3067661 | c.285C>G | synonymous_variant | 0.17 |
thyX | 3067685 | c.261A>C | synonymous_variant | 0.22 |
thyX | 3067691 | p.Ile85Leu | missense_variant | 0.22 |
thyX | 3067694 | c.252G>C | synonymous_variant | 0.2 |
thyX | 3067718 | c.228C>G | synonymous_variant | 0.17 |
thyX | 3067721 | c.225T>C | synonymous_variant | 0.17 |
thyX | 3067727 | c.219A>C | synonymous_variant | 0.15 |
thyX | 3067736 | p.Phe70Leu | missense_variant | 0.14 |
thyX | 3067739 | c.207T>C | synonymous_variant | 0.14 |
thyX | 3067761 | p.Arg62Lys | missense_variant | 0.15 |
thyX | 3067765 | p.Leu61Ile | missense_variant | 0.14 |
thyX | 3067772 | c.174C>G | synonymous_variant | 0.14 |
thyX | 3067781 | c.165C>A | synonymous_variant | 0.15 |
ald | 3086788 | c.-32T>C | upstream_gene_variant | 1.0 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 1.0 |
Rv3236c | 3612813 | p.Thr102Ala | missense_variant | 0.97 |
rpoA | 3877656 | c.852T>G | synonymous_variant | 0.16 |
rpoA | 3877668 | c.840A>G | synonymous_variant | 0.15 |
rpoA | 3877679 | p.Ala277Ser | missense_variant | 0.15 |
rpoA | 3877782 | c.726T>C | synonymous_variant | 0.13 |
rpoA | 3877818 | c.690A>G | synonymous_variant | 0.14 |
rpoA | 3877839 | c.669G>C | synonymous_variant | 0.2 |
rpoA | 3877848 | c.660C>T | synonymous_variant | 0.14 |
rpoA | 3877857 | c.651G>A | synonymous_variant | 0.23 |
rpoA | 3877866 | c.642G>C | synonymous_variant | 0.22 |
rpoA | 3877875 | c.633T>G | synonymous_variant | 0.22 |
rpoA | 3877878 | c.630G>C | synonymous_variant | 0.22 |
rpoA | 3877890 | c.618C>T | synonymous_variant | 0.2 |
rpoA | 3877896 | c.612G>C | synonymous_variant | 0.19 |
rpoA | 3877900 | p.Ser203Asn | missense_variant | 0.19 |
rpoA | 3877905 | c.603A>G | synonymous_variant | 0.17 |
rpoA | 3877909 | p.Asn200Ser | missense_variant | 0.16 |
clpC1 | 4038908 | c.1797C>G | synonymous_variant | 0.13 |
clpC1 | 4038914 | c.1791G>C | synonymous_variant | 0.13 |
clpC1 | 4038923 | c.1782A>G | synonymous_variant | 0.13 |
clpC1 | 4038953 | c.1752A>G | synonymous_variant | 0.14 |
clpC1 | 4038956 | c.1749T>C | synonymous_variant | 0.14 |
clpC1 | 4038965 | c.1740T>C | synonymous_variant | 0.15 |
clpC1 | 4038971 | c.1734T>C | synonymous_variant | 0.15 |
clpC1 | 4038974 | c.1731T>C | synonymous_variant | 0.15 |
clpC1 | 4038989 | c.1716T>C | synonymous_variant | 0.15 |
clpC1 | 4038997 | c.1708T>C | synonymous_variant | 0.15 |
clpC1 | 4039004 | c.1701C>G | synonymous_variant | 0.16 |
clpC1 | 4039775 | c.930G>C | synonymous_variant | 0.14 |
clpC1 | 4039781 | c.924G>C | synonymous_variant | 0.13 |
clpC1 | 4039790 | c.915C>G | synonymous_variant | 0.15 |
clpC1 | 4039826 | c.879C>G | synonymous_variant | 0.13 |
clpC1 | 4040033 | c.672G>C | synonymous_variant | 0.14 |
clpC1 | 4040036 | c.669C>G | synonymous_variant | 0.14 |
clpC1 | 4040228 | c.477G>T | synonymous_variant | 0.12 |
clpC1 | 4040237 | c.468C>T | synonymous_variant | 0.14 |
clpC1 | 4040246 | c.459C>G | synonymous_variant | 0.15 |
clpC1 | 4040249 | c.456A>G | synonymous_variant | 0.14 |
clpC1 | 4040267 | c.438A>G | synonymous_variant | 0.14 |
clpC1 | 4040291 | c.414G>C | synonymous_variant | 0.16 |
clpC1 | 4040318 | c.387C>G | synonymous_variant | 0.16 |
embC | 4241449 | c.1587C>G | synonymous_variant | 0.15 |
embC | 4241453 | p.Ile531Val | missense_variant | 0.16 |
embC | 4241479 | c.1617C>G | synonymous_variant | 0.15 |
embC | 4241480 | c.1618T>C | synonymous_variant | 0.15 |
embC | 4241488 | c.1626G>C | synonymous_variant | 0.17 |
embC | 4241496 | p.Ala545Gly | missense_variant | 0.17 |
embC | 4241500 | c.1638A>C | synonymous_variant | 0.17 |
embC | 4241501 | p.Ser547Thr | missense_variant | 0.17 |
embC | 4241506 | c.1644G>C | synonymous_variant | 0.18 |
embC | 4241518 | c.1656A>G | synonymous_variant | 0.17 |
embC | 4241521 | c.1659T>C | synonymous_variant | 0.18 |
embC | 4241530 | c.1668C>A | synonymous_variant | 0.19 |
embC | 4241536 | c.1674A>G | synonymous_variant | 0.17 |
embC | 4241539 | c.1677T>C | synonymous_variant | 0.17 |
embC | 4241545 | c.1683T>C | synonymous_variant | 0.17 |
embC | 4241548 | c.1686T>C | synonymous_variant | 0.16 |
embC | 4241551 | c.1689A>G | synonymous_variant | 0.15 |
embC | 4241567 | p.Ile569Val | missense_variant | 0.18 |
embC | 4241572 | c.1710C>G | synonymous_variant | 0.16 |
embC | 4241578 | c.1716G>C | synonymous_variant | 0.14 |
embC | 4241587 | c.1725C>G | synonymous_variant | 0.14 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embA | 4243460 | c.228C>T | synonymous_variant | 0.98 |
aftB | 4267647 | p.Asp397Gly | missense_variant | 0.97 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |
gid | 4407588 | c.615A>G | synonymous_variant | 0.94 |
gid | 4407927 | p.Glu92Asp | missense_variant | 1.0 |