TB-Profiler result

Run: SRR6785413
Summary

Run ID: SRR6785413

Sample name:

Date: 04-04-2023 15:53:07

Number of reads: 2683619

Percentage reads mapped: 82.94

Strain: lineage2.2.1

Drug-resistance: Other

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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
lineage2 East-Asian Beijing RD105 0.99
lineage2.2 East-Asian (Beijing) Beijing-RD207 RD105;RD207 0.97
lineage2.2.1 East-Asian (Beijing) Beijing-RD181 RD105;RD207;RD181 0.99
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
rpsL 781822 p.Lys88Arg missense_variant 0.78 streptomycin
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
gyrB 6256 c.1017G>A synonymous_variant 0.15
gyrB 6268 c.1029C>G synonymous_variant 0.17
gyrB 6280 c.1041T>C synonymous_variant 0.13
gyrA 6616 c.-686A>G upstream_gene_variant 0.15
gyrA 6622 c.-680C>T upstream_gene_variant 0.16
gyrA 6634 c.-668T>C upstream_gene_variant 0.19
gyrA 6637 c.-665T>G upstream_gene_variant 0.19
gyrA 6640 c.-662A>G upstream_gene_variant 0.21
gyrA 6649 c.-653T>C upstream_gene_variant 0.22
gyrA 6655 c.-647T>C upstream_gene_variant 0.22
gyrA 6670 c.-632G>C upstream_gene_variant 0.22
gyrA 6673 c.-629A>C upstream_gene_variant 0.23
gyrA 6676 c.-626T>G upstream_gene_variant 0.23
gyrA 6700 c.-602T>C upstream_gene_variant 0.2
gyrA 6703 c.-599G>C upstream_gene_variant 0.19
gyrA 6709 c.-593A>G upstream_gene_variant 0.19
gyrA 6712 c.-590G>C upstream_gene_variant 0.18
gyrA 6728 c.-574_-572delCTAinsTTG upstream_gene_variant 0.15
gyrA 7007 c.-295C>T upstream_gene_variant 0.16
gyrA 7010 c.-292C>T upstream_gene_variant 0.16
gyrB 7023 p.Leu595Gln missense_variant 0.14
gyrA 7033 c.-269G>C upstream_gene_variant 0.19
gyrB 7051 p.Glu604Asp missense_variant 0.2
gyrA 7066 c.-236G>C upstream_gene_variant 0.16
gyrA 7078 c.-224A>C upstream_gene_variant 0.14
gyrA 7084 c.-218A>G upstream_gene_variant 0.15
gyrA 7090 c.-212C>T upstream_gene_variant 0.16
gyrA 7093 c.-209T>G upstream_gene_variant 0.14
gyrA 7099 c.-203G>A upstream_gene_variant 0.14
gyrA 7108 c.-194G>A upstream_gene_variant 0.18
gyrA 7114 c.-188C>A upstream_gene_variant 0.18
gyrB 7124 p.Ser629Thr missense_variant 0.17
gyrA 7129 c.-173T>C upstream_gene_variant 0.15
gyrA 7132 c.-170T>G upstream_gene_variant 0.17
gyrA 7141 c.-161T>C upstream_gene_variant 0.17
gyrA 7165 c.-137C>G upstream_gene_variant 0.13
gyrA 7362 p.Glu21Gln missense_variant 1.0
gyrA 7442 c.141G>C synonymous_variant 0.14
gyrA 7451 c.150C>G synonymous_variant 0.15
gyrA 7457 c.156T>C synonymous_variant 0.14
gyrA 7547 c.246C>T synonymous_variant 0.13
gyrA 7585 p.Ser95Thr missense_variant 1.0
gyrA 7637 c.336C>G synonymous_variant 0.14
gyrA 7664 c.363T>C synonymous_variant 0.15
gyrA 7670 c.369A>G synonymous_variant 0.15
gyrA 8619 c.1318T>C synonymous_variant 0.15
gyrA 8624 c.1323G>C synonymous_variant 0.15
gyrA 8636 c.1335A>C synonymous_variant 0.16
gyrA 8642 c.1341A>G synonymous_variant 0.17
gyrA 8678 c.1377G>A synonymous_variant 0.13
gyrA 9304 p.Gly668Asp missense_variant 1.0
fgd1 491173 c.391C>A synonymous_variant 0.14
fgd1 491191 p.Gly137Arg missense_variant 0.14
fgd1 491232 c.450T>C synonymous_variant 0.17
fgd1 491241 p.Asp153Glu missense_variant 0.19
fgd1 491244 c.462T>C synonymous_variant 0.18
fgd1 491259 c.477T>C synonymous_variant 0.18
fgd1 491283 p.Asp167Glu missense_variant 0.15
fgd1 491742 c.960T>C synonymous_variant 0.98
mshA 575907 p.Ala187Val missense_variant 0.9
ccsA 620625 p.Ile245Met missense_variant 1.0
rpoB 760196 c.390C>G synonymous_variant 0.14
rpoB 760223 c.417T>C synonymous_variant 0.15
rpoB 760235 c.429T>C synonymous_variant 0.15
rpoB 760298 c.492G>C synonymous_variant 0.14
rpoB 760307 c.501T>C synonymous_variant 0.15
rpoB 760310 c.504G>C synonymous_variant 0.15
rpoB 760331 c.525G>C synonymous_variant 0.14
rpoB 760340 c.534G>T synonymous_variant 0.16
rpoB 760361 c.555T>C synonymous_variant 0.15
rpoB 760370 c.564C>G synonymous_variant 0.14
rpoB 760611 c.805T>C synonymous_variant 0.13
rpoB 760982 c.1176G>C synonymous_variant 0.14
rpoB 760985 c.1179G>C synonymous_variant 0.14
rpoB 760991 c.1185G>C synonymous_variant 0.17
rpoB 761006 c.1200C>G synonymous_variant 0.19
rpoB 761015 c.1209G>C synonymous_variant 0.2
rpoB 761021 c.1215G>C synonymous_variant 0.2
rpoB 761027 c.1221A>G synonymous_variant 0.21
rpoB 761036 c.1230G>C synonymous_variant 0.2
rpoB 761037 c.1231T>C synonymous_variant 0.2
rpoB 761057 c.1251G>C synonymous_variant 0.19
rpoB 761102 c.1296A>G synonymous_variant 0.16
rpoB 761129 c.1323G>C synonymous_variant 0.15
rpoB 761132 c.1326G>T synonymous_variant 0.14
rpoB 761133 c.1327T>C synonymous_variant 0.14
rpoB 761180 c.1374A>C synonymous_variant 0.17
rpoB 761189 c.1383T>C synonymous_variant 0.17
rpoB 761195 c.1389G>C synonymous_variant 0.15
rpoB 761207 c.1401C>T synonymous_variant 0.15
rpoB 761213 c.1407G>C synonymous_variant 0.15
rpoB 761219 c.1413G>C synonymous_variant 0.15
rpoB 761249 c.1443A>G synonymous_variant 0.18
rpoB 761255 c.1449T>G synonymous_variant 0.18
rpoB 761261 c.1455G>T synonymous_variant 0.18
rpoB 761306 c.1500C>G synonymous_variant 0.17
rpoB 761573 c.1767C>G synonymous_variant 0.14
rpoC 762989 c.-381G>C upstream_gene_variant 0.14
rpoC 762995 c.-375G>T upstream_gene_variant 0.15
rpoC 763013 c.-357C>G upstream_gene_variant 0.18
rpoC 763025 c.-345C>T upstream_gene_variant 0.13
rpoC 763028 c.-342T>C upstream_gene_variant 0.19
rpoC 763031 c.-339T>C upstream_gene_variant 0.98
rpoC 763034 c.-336C>G upstream_gene_variant 0.19
rpoC 763040 c.-330C>G upstream_gene_variant 0.21
rpoC 763070 c.-300T>C upstream_gene_variant 0.24
rpoC 763085 c.-285C>G upstream_gene_variant 0.19
rpoC 763115 c.-255T>C upstream_gene_variant 0.18
rpoC 763136 c.-234C>T upstream_gene_variant 0.17
rpoC 763148 c.-222G>C upstream_gene_variant 0.15
rpoC 763158 c.-212C>T upstream_gene_variant 0.15
rpoC 763402 c.33C>G synonymous_variant 0.14
rpoC 763411 c.42T>G synonymous_variant 0.15
rpoC 763414 c.45T>C synonymous_variant 0.15
rpoC 763441 c.72C>T synonymous_variant 0.22
rpoC 763444 c.75T>C synonymous_variant 0.22
rpoC 763456 c.87A>G synonymous_variant 0.22
rpoC 763486 c.117T>G synonymous_variant 0.26
rpoC 763528 c.159G>A synonymous_variant 0.25
rpoC 763546 c.177A>G synonymous_variant 0.22
rpoC 763570 c.201G>C synonymous_variant 0.27
rpoC 763573 c.204G>C synonymous_variant 0.28
rpoC 763594 c.225C>T synonymous_variant 0.25
rpoC 763603 c.234C>T synonymous_variant 0.25
rpoC 763636 c.267T>C synonymous_variant 0.28
rpoC 763660 c.291T>G synonymous_variant 0.33
rpoC 763675 c.306C>G synonymous_variant 0.3
rpoC 763696 c.327T>C synonymous_variant 0.34
rpoC 763702 c.333C>G synonymous_variant 0.33
rpoC 763717 c.348T>C synonymous_variant 0.28
rpoC 763723 c.354G>C synonymous_variant 0.27
rpoC 763732 c.363C>G synonymous_variant 0.27
rpoC 763741 c.372C>T synonymous_variant 0.25
rpoC 763744 c.375G>C synonymous_variant 0.26
rpoC 763765 c.396T>C synonymous_variant 0.24
rpoC 763774 c.405G>C synonymous_variant 0.24
rpoC 763807 c.438T>C synonymous_variant 0.23
rpoC 763816 c.447C>G synonymous_variant 0.21
rpoC 763835 p.Ala156Met missense_variant 0.22
rpoC 763853 p.Val162Ile missense_variant 0.23
rpoC 763858 c.489A>G synonymous_variant 0.2
rpoC 763872 p.Gly168Ala missense_variant 0.2
rpoC 763876 p.Glu169Asp missense_variant 0.2
rpoC 763879 c.510A>G synonymous_variant 0.18
rpoC 763888 c.519G>C synonymous_variant 0.21
rpoC 763891 c.522G>C synonymous_variant 0.22
rpoC 763894 c.525A>G synonymous_variant 0.21
rpoC 763900 c.531G>C synonymous_variant 0.22
rpoC 763936 c.567C>G synonymous_variant 0.17
rpoC 763939 c.570G>A synonymous_variant 0.14
rpoC 763942 c.573C>G synonymous_variant 0.14
rpoC 763948 c.579G>A synonymous_variant 0.13
rpoC 763949 c.580C>A synonymous_variant 0.14
rpoC 763954 c.585C>G synonymous_variant 0.14
rpoC 764257 c.888G>C synonymous_variant 0.15
rpoC 764266 c.897T>C synonymous_variant 0.15
rpoC 764269 c.900G>C synonymous_variant 0.16
rpoC 764272 c.903G>C synonymous_variant 0.17
rpoC 764278 c.909A>G synonymous_variant 0.16
rpoC 764338 c.969G>A synonymous_variant 0.15
rpoC 764353 c.984G>C synonymous_variant 0.19
rpoC 764365 c.996C>T synonymous_variant 0.17
rpoC 764380 c.1011G>C synonymous_variant 0.16
rpoC 764381 c.1012_1013delTCinsAG synonymous_variant 0.16
rpoC 764387 c.1018_1020delTTGinsCTC synonymous_variant 0.17
rpoC 764405 c.1036A>C synonymous_variant 0.14
rpoC 764419 c.1050C>G synonymous_variant 0.13
rpoC 764428 c.1059G>C synonymous_variant 0.14
rpoC 764431 c.1062G>C synonymous_variant 0.14
rpoC 764434 c.1065A>G synonymous_variant 0.15
rpoC 764446 c.1077T>C synonymous_variant 0.18
rpoC 764449 c.1080G>C synonymous_variant 0.17
rpoC 764452 c.1083T>C synonymous_variant 0.17
rpoC 764458 c.1089G>C synonymous_variant 0.18
rpoC 764461 c.1092A>G synonymous_variant 0.18
rpoC 764489 c.1120C>T synonymous_variant 0.17
rpoC 764510 c.1141C>T synonymous_variant 0.16
rpoC 764521 c.1152T>C synonymous_variant 0.16
rpoC 764527 c.1158C>T synonymous_variant 0.18
rpoC 764536 c.1167G>C synonymous_variant 0.18
rpoC 764539 c.1170C>G synonymous_variant 0.17
rpoC 764554 c.1185C>T synonymous_variant 0.19
rpoC 764560 c.1191T>C synonymous_variant 0.22
rpoC 764566 c.1197C>G synonymous_variant 0.21
rpoC 764575 c.1206T>G synonymous_variant 0.21
rpoC 764581 c.1212T>C synonymous_variant 0.22
rpoC 764593 c.1224C>T synonymous_variant 0.22
rpoC 764611 c.1242G>T synonymous_variant 0.21
rpoC 764650 c.1281G>C synonymous_variant 0.17
rpoC 764651 c.1282_1284delTCGinsAGC synonymous_variant 0.17
rpoC 764858 c.1489T>C synonymous_variant 0.17
rpoC 764872 c.1503A>G synonymous_variant 0.17
rpoC 764888 c.1519T>C synonymous_variant 0.16
rpoC 764932 c.1563C>A synonymous_variant 0.14
rpoC 764935 c.1566T>C synonymous_variant 0.14
rpoC 764948 c.1579T>C synonymous_variant 0.16
rpoC 764968 c.1599T>C synonymous_variant 0.17
rpoC 764995 c.1626C>G synonymous_variant 0.16
rpoC 765019 c.1650A>G synonymous_variant 0.16
rpoC 765034 c.1665T>C synonymous_variant 0.15
rpoC 765040 c.1671T>C synonymous_variant 0.17
rpoC 765047 c.1678T>C synonymous_variant 0.14
rpoC 765053 c.1684_1685delTCinsAG synonymous_variant 0.15
rpoC 765404 p.Leu679Val missense_variant 0.14
rpoC 765409 c.2040T>C synonymous_variant 0.16
rpoC 765421 c.2052C>G synonymous_variant 0.15
rpoC 766021 c.2652G>C synonymous_variant 0.13
rpoC 766027 c.2658G>C synonymous_variant 0.13
rpoC 766054 c.2685C>G synonymous_variant 0.14
rpoC 766522 c.3153C>G synonymous_variant 0.16
rpoC 766528 c.3159T>C synonymous_variant 0.17
rpoC 766531 c.3162G>C synonymous_variant 0.17
rpoC 766540 p.Asp1057Glu missense_variant 0.16
rpoC 766573 c.3204T>C synonymous_variant 0.17
rpoC 766582 c.3213C>G synonymous_variant 0.15
rpoC 766583 p.Gly1072Ser missense_variant 0.15
rpoC 766591 c.3222A>G synonymous_variant 0.15
rpoC 766594 c.3225G>C synonymous_variant 0.15
rpoC 766597 c.3228C>G synonymous_variant 0.14
rpoC 766607 p.Ile1080Leu missense_variant 0.18
rpoC 766630 c.3261G>C synonymous_variant 0.22
rpoC 766645 p.Glu1092Asp missense_variant 0.87
rpoC 766726 c.3357T>C synonymous_variant 0.18
rpoC 766738 c.3369G>C synonymous_variant 0.22
rpoC 766765 c.3396A>C synonymous_variant 0.24
rpoC 766774 c.3405T>C synonymous_variant 0.24
rpoC 766801 c.3432C>G synonymous_variant 0.19
rpoC 766804 c.3435A>G synonymous_variant 0.19
rpoC 766861 c.3492G>C synonymous_variant 0.21
rpoC 766864 c.3495G>C synonymous_variant 0.22
rpoC 766894 c.3525T>C synonymous_variant 0.22
rpoC 766900 c.3531T>C synonymous_variant 0.23
rpoC 766933 c.3564A>G synonymous_variant 0.25
rpoC 766945 c.3576A>G synonymous_variant 0.24
rpoC 766963 c.3594T>C synonymous_variant 0.19
rpoC 766972 c.3603G>C synonymous_variant 0.21
rpoC 766996 c.3627C>T synonymous_variant 0.15
rpoC 767033 p.Ser1222Arg missense_variant 0.16
rpoC 767059 c.3690T>G synonymous_variant 0.17
rpoC 767062 c.3693C>A synonymous_variant 0.16
rpoC 767098 c.3729T>C synonymous_variant 0.14
rpoC 767119 c.3750A>G synonymous_variant 0.14
mmpL5 775639 p.Ile948Val missense_variant 1.0
mmpL5 775981 p.Leu834Met missense_variant 0.14
mmpL5 776009 c.2472A>G synonymous_variant 0.16
mmpL5 776100 p.Thr794Ile missense_variant 0.98
mmpL5 776182 p.Asp767Asn missense_variant 0.98
mmpS5 779615 c.-710C>G upstream_gene_variant 0.96
rpsL 781395 c.-165T>C upstream_gene_variant 1.0
rpsL 781808 c.249C>T synonymous_variant 0.17
rpsL 781811 c.252C>T synonymous_variant 0.17
rpsL 781832 c.273T>C synonymous_variant 0.16
rpsL 781838 c.279G>C synonymous_variant 0.16
rpsL 781841 c.282C>G synonymous_variant 0.17
rpsL 781929 p.Gly124Ser missense_variant 0.13
fbiC 1303695 c.765T>C synonymous_variant 0.14
fbiC 1304916 c.1986T>C synonymous_variant 0.15
fbiC 1304928 c.1998T>C synonymous_variant 0.16
fbiC 1304937 c.2007G>C synonymous_variant 0.17
Rv1258c 1406760 c.580_581insC frameshift_variant 0.97
rrs 1471659 n.-187C>T upstream_gene_variant 1.0
rrs 1473290 n.1445C>T non_coding_transcript_exon_variant 0.16
rrl 1473877 n.220G>A non_coding_transcript_exon_variant 0.16
rrl 1473898 n.241C>T non_coding_transcript_exon_variant 0.22
rrl 1473899 n.242A>C non_coding_transcript_exon_variant 0.22
rrl 1473943 n.286G>T non_coding_transcript_exon_variant 0.19
rrl 1474639 n.982G>A non_coding_transcript_exon_variant 0.16
rrl 1474794 n.1137C>T non_coding_transcript_exon_variant 0.19
rrl 1474812 n.1155G>A non_coding_transcript_exon_variant 0.18
rrl 1474970 n.1313G>A non_coding_transcript_exon_variant 0.13
rrl 1475199 n.1542G>A non_coding_transcript_exon_variant 0.19
rrl 1475206 n.1549C>T non_coding_transcript_exon_variant 0.19
rrl 1475209 n.1552G>C non_coding_transcript_exon_variant 0.16
rrl 1475213 n.1556C>T non_coding_transcript_exon_variant 0.16
rrl 1475249 n.1592T>C non_coding_transcript_exon_variant 0.14
rrl 1475252 n.1595C>T non_coding_transcript_exon_variant 0.13
rrl 1475369 n.1712G>T non_coding_transcript_exon_variant 0.15
rrl 1475402 n.1745C>T non_coding_transcript_exon_variant 0.19
rrl 1475419 n.1762C>T non_coding_transcript_exon_variant 0.13
rrl 1475483 n.1826C>T non_coding_transcript_exon_variant 0.15
rrl 1475599 n.1942A>G non_coding_transcript_exon_variant 0.16
rrl 1475608 n.1951T>C non_coding_transcript_exon_variant 0.16
rrl 1475638 n.1981C>T non_coding_transcript_exon_variant 0.19
rrl 1475642 n.1985T>C non_coding_transcript_exon_variant 0.19
rrl 1475657 n.2000A>G non_coding_transcript_exon_variant 0.21
rrl 1475659 n.2002G>T non_coding_transcript_exon_variant 0.22
rrl 1476214 n.2557G>A non_coding_transcript_exon_variant 0.17
rrl 1476224 n.2567A>G non_coding_transcript_exon_variant 0.17
rrl 1476281 n.2624T>C non_coding_transcript_exon_variant 0.2
rpsA 1833724 c.183C>G synonymous_variant 0.13
rpsA 1833742 c.201A>G synonymous_variant 0.15
rpsA 1833745 c.204G>C synonymous_variant 0.15
rpsA 1833748 c.207C>G synonymous_variant 0.16
rpsA 1833787 c.246C>G synonymous_variant 0.14
rpsA 1833790 c.249T>C synonymous_variant 0.14
rpsA 1833874 c.333T>C synonymous_variant 0.15
rpsA 1833886 c.345C>G synonymous_variant 0.15
rpsA 1833971 c.430C>T synonymous_variant 0.14
rpsA 1833979 c.438T>C synonymous_variant 0.14
rpsA 1834000 c.459G>C synonymous_variant 0.14
rpsA 1834021 c.480C>T synonymous_variant 0.15
rpsA 1834030 c.489C>G synonymous_variant 0.16
rpsA 1834081 c.540C>T synonymous_variant 0.13
rpsA 1834177 c.636A>C synonymous_variant 0.98
rpsA 1834348 c.807T>C synonymous_variant 0.14
rpsA 1834366 c.825A>G synonymous_variant 0.14
rpsA 1834396 c.855G>C synonymous_variant 0.17
rpsA 1834411 c.870T>C synonymous_variant 0.18
rpsA 1834417 c.876G>C synonymous_variant 0.19
rpsA 1834423 c.882G>C synonymous_variant 0.19
rpsA 1834435 c.894G>C synonymous_variant 0.17
rpsA 1834451 c.910T>C synonymous_variant 0.14
rpsA 1834465 c.924T>C synonymous_variant 0.15
rpsA 1834468 c.927A>G synonymous_variant 0.15
rpsA 1834489 c.948T>C synonymous_variant 0.13
rpsA 1834528 c.987T>C synonymous_variant 0.14
rpsA 1834540 c.999G>C synonymous_variant 0.15
rpsA 1834546 c.1005T>C synonymous_variant 0.15
rpsA 1834609 c.1068T>C synonymous_variant 0.21
rpsA 1834618 c.1077G>C synonymous_variant 0.17
rpsA 1834633 c.1092A>G synonymous_variant 0.2
rpsA 1834639 c.1098T>C synonymous_variant 0.2
rpsA 1834654 p.Glu371Asp missense_variant 0.25
rpsA 1834690 c.1149T>C synonymous_variant 0.22
tlyA 1917972 c.33A>G synonymous_variant 1.0
katG 2154724 p.Arg463Leu missense_variant 0.99
PPE35 2167926 p.Leu896Ser missense_variant 1.0
PPE35 2169902 c.711G>C synonymous_variant 0.13
PPE35 2169910 p.Asn235Tyr missense_variant 0.14
Rv1979c 2223293 c.-129A>G upstream_gene_variant 1.0
thyX 3067391 c.555G>C synonymous_variant 0.14
thyX 3067394 c.552G>C synonymous_variant 0.18
thyX 3067439 c.507A>G synonymous_variant 0.22
thyX 3067445 c.501C>G synonymous_variant 0.21
thyX 3067457 c.489C>G synonymous_variant 0.21
thyX 3067465 p.Ile161Val missense_variant 0.2
thyX 3067475 c.471A>G synonymous_variant 0.2
thyX 3067490 c.456C>G synonymous_variant 0.19
thyX 3067493 c.453A>G synonymous_variant 0.2
thyX 3067515 p.Ser144Thr missense_variant 0.23
thyX 3067530 p.Ala139Ser missense_variant 0.2
thyX 3067545 p.Glu134Ala missense_variant 0.2
thyX 3067549 p.Thr133Ala missense_variant 0.2
thyX 3067556 p.His130Gln missense_variant 0.2
thyX 3067559 c.387C>G synonymous_variant 0.22
thyX 3067565 p.Asp127Glu missense_variant 0.22
thyX 3067570 p.Ala126Pro missense_variant 0.22
thyX 3067577 c.369G>A synonymous_variant 0.18
thyX 3067583 c.363C>G synonymous_variant 0.21
thyX 3067601 p.Arg115His missense_variant 0.2
thyX 3067611 p.Lys112Thr missense_variant 0.22
thyX 3067619 c.327A>C synonymous_variant 0.23
thyX 3067631 c.315C>G synonymous_variant 0.23
thyX 3067634 c.312C>G synonymous_variant 0.24
thyX 3067652 c.294T>C synonymous_variant 0.18
thyX 3067661 c.285C>G synonymous_variant 0.17
thyX 3067685 c.261A>C synonymous_variant 0.22
thyX 3067691 p.Ile85Leu missense_variant 0.22
thyX 3067694 c.252G>C synonymous_variant 0.2
thyX 3067718 c.228C>G synonymous_variant 0.17
thyX 3067721 c.225T>C synonymous_variant 0.17
thyX 3067727 c.219A>C synonymous_variant 0.15
thyX 3067736 p.Phe70Leu missense_variant 0.14
thyX 3067739 c.207T>C synonymous_variant 0.14
thyX 3067761 p.Arg62Lys missense_variant 0.15
thyX 3067765 p.Leu61Ile missense_variant 0.14
thyX 3067772 c.174C>G synonymous_variant 0.14
thyX 3067781 c.165C>A synonymous_variant 0.15
ald 3086788 c.-32T>C upstream_gene_variant 1.0
fprA 3473996 c.-11_-10insA upstream_gene_variant 1.0
Rv3236c 3612813 p.Thr102Ala missense_variant 0.97
rpoA 3877656 c.852T>G synonymous_variant 0.16
rpoA 3877668 c.840A>G synonymous_variant 0.15
rpoA 3877679 p.Ala277Ser missense_variant 0.15
rpoA 3877782 c.726T>C synonymous_variant 0.13
rpoA 3877818 c.690A>G synonymous_variant 0.14
rpoA 3877839 c.669G>C synonymous_variant 0.2
rpoA 3877848 c.660C>T synonymous_variant 0.14
rpoA 3877857 c.651G>A synonymous_variant 0.23
rpoA 3877866 c.642G>C synonymous_variant 0.22
rpoA 3877875 c.633T>G synonymous_variant 0.22
rpoA 3877878 c.630G>C synonymous_variant 0.22
rpoA 3877890 c.618C>T synonymous_variant 0.2
rpoA 3877896 c.612G>C synonymous_variant 0.19
rpoA 3877900 p.Ser203Asn missense_variant 0.19
rpoA 3877905 c.603A>G synonymous_variant 0.17
rpoA 3877909 p.Asn200Ser missense_variant 0.16
clpC1 4038908 c.1797C>G synonymous_variant 0.13
clpC1 4038914 c.1791G>C synonymous_variant 0.13
clpC1 4038923 c.1782A>G synonymous_variant 0.13
clpC1 4038953 c.1752A>G synonymous_variant 0.14
clpC1 4038956 c.1749T>C synonymous_variant 0.14
clpC1 4038965 c.1740T>C synonymous_variant 0.15
clpC1 4038971 c.1734T>C synonymous_variant 0.15
clpC1 4038974 c.1731T>C synonymous_variant 0.15
clpC1 4038989 c.1716T>C synonymous_variant 0.15
clpC1 4038997 c.1708T>C synonymous_variant 0.15
clpC1 4039004 c.1701C>G synonymous_variant 0.16
clpC1 4039775 c.930G>C synonymous_variant 0.14
clpC1 4039781 c.924G>C synonymous_variant 0.13
clpC1 4039790 c.915C>G synonymous_variant 0.15
clpC1 4039826 c.879C>G synonymous_variant 0.13
clpC1 4040033 c.672G>C synonymous_variant 0.14
clpC1 4040036 c.669C>G synonymous_variant 0.14
clpC1 4040228 c.477G>T synonymous_variant 0.12
clpC1 4040237 c.468C>T synonymous_variant 0.14
clpC1 4040246 c.459C>G synonymous_variant 0.15
clpC1 4040249 c.456A>G synonymous_variant 0.14
clpC1 4040267 c.438A>G synonymous_variant 0.14
clpC1 4040291 c.414G>C synonymous_variant 0.16
clpC1 4040318 c.387C>G synonymous_variant 0.16
embC 4241449 c.1587C>G synonymous_variant 0.15
embC 4241453 p.Ile531Val missense_variant 0.16
embC 4241479 c.1617C>G synonymous_variant 0.15
embC 4241480 c.1618T>C synonymous_variant 0.15
embC 4241488 c.1626G>C synonymous_variant 0.17
embC 4241496 p.Ala545Gly missense_variant 0.17
embC 4241500 c.1638A>C synonymous_variant 0.17
embC 4241501 p.Ser547Thr missense_variant 0.17
embC 4241506 c.1644G>C synonymous_variant 0.18
embC 4241518 c.1656A>G synonymous_variant 0.17
embC 4241521 c.1659T>C synonymous_variant 0.18
embC 4241530 c.1668C>A synonymous_variant 0.19
embC 4241536 c.1674A>G synonymous_variant 0.17
embC 4241539 c.1677T>C synonymous_variant 0.17
embC 4241545 c.1683T>C synonymous_variant 0.17
embC 4241548 c.1686T>C synonymous_variant 0.16
embC 4241551 c.1689A>G synonymous_variant 0.15
embC 4241567 p.Ile569Val missense_variant 0.18
embC 4241572 c.1710C>G synonymous_variant 0.16
embC 4241578 c.1716G>C synonymous_variant 0.14
embC 4241587 c.1725C>G synonymous_variant 0.14
embA 4242643 c.-590C>T upstream_gene_variant 1.0
embA 4243460 c.228C>T synonymous_variant 0.98
aftB 4267647 p.Asp397Gly missense_variant 0.97
whiB6 4338595 c.-75delG upstream_gene_variant 1.0
gid 4407588 c.615A>G synonymous_variant 0.94
gid 4407927 p.Glu92Asp missense_variant 1.0