Rv3793 - c.1659T>C


Drug resistance types
20 Sensitive 11 RR-TB 51 HR-TB 28 MDR-TB 2 Pre-XDR-TB 1 XDR-TB 116 Other
lineage Counts
lineage Count
22
lineage2.1;lineage4.9 19
lineage4.9 26
lineage1.2.2.2 1
lineage3 3
lineage5.2 2
M.canetti;lineage2.1;lineage4.9 18
lineage4.1.3 2
lineage4.2.1.1 13
M.canetti;lineage2.1;lineage6.3 2
La1.7;lineage4.9 1
lineage2.1;lineage2.2;lineage6.3 1
La1.6;La3;lineage4.6.4;lineage4.8.1;lineage4.9 1
lineage4.6.2.2 1
La1.2 1
La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 4
lineage4.6.3;lineage4.9 1
lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 1
M.canetti;lineage2.1;lineage4.9;lineage6.3 5
lineage4.1.2.1 8
lineage2.1;lineage4.1.1.1;lineage6.3 2
M.canetti;lineage4.1.4;lineage4.6.3;lineage4.9;lineage6.3 1
lineage4.9;lineage7 3
La1.7.1 1
lineage2.1;lineage4.9;lineage7 1
M.canetti;lineage4.1.1.3;lineage6.3;lineage8 1
lineage4.2;lineage4.9 1
lineage2.1;lineage4.9;lineage6.3 8
La3;lineage2.1;lineage4.9;lineage6.3 4
lineage4.8 2
lineage4.2;lineage4.6.3;lineage4.9.1 1
lineage2.1;lineage6.3 2
M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3 1
M.canetti;lineage4.9 1
lineage2.2 3
La1.6;La3;M.canetti;lineage2.1;lineage4.9 1
La1.6;M.canetti;lineage4.8.1;lineage4.9;lineage6.3 1
lineage4.9;lineage6.3 2
lineage4 2
La1;lineage4.9 1
La3 2
lineage2.1 3
La1;lineage4.1.2 1
La3;lineage2.1;lineage4.9 2
lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 1
lineage2.2.1 8
La1.2.BCG 1
lineage4.1.4 1
lineage4.3.4.2.1 1
lineage4.1 1
M.canetti;lineage2.1;lineage4.9;lineage6.3;lineage8 1
La1.2.BCG;La1.8.1 1
M.canetti;lineage4.2;lineage4.9 1
lineage4.6.1.1 1
La1.6;La3;M.canetti;lineage4.6.4;lineage4.9 1
La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.9 1
La3;M.canetti;lineage2.2.1 1
lineage4.1.1.1 1
M.canetti;lineage2.1;lineage4.1.2.1 1
lineage2.1;lineage4.9;lineage6.3;lineage8 1
M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 4
lineage2.2.1.1 1
M.canetti;lineage2.1;lineage4.3.1;lineage4.9 1
lineage1.1 1
lineage3.1;lineage9 1
La3;lineage2.1;lineage6.3 1
M.canetti;lineage2.1;lineage4.1.4;lineage4.9 2
M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 1
La3;lineage4.8 1
La1.6;La3;M.canetti;lineage4.8.1;lineage4.9 1
M.canetti;lineage4.9;lineage9 1
lineage6.3.1 1
La3;lineage2 1
La1.7.X-unk4;lineage4.9 1
lineage4.7 1
La3;lineage1.1.2 1
La1.6;La3;lineage4.6.4;lineage4.9 1
La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 1
lineage4.6.3;lineage4.9;lineage6.3 1
La3;lineage2.2.1 1
M.canetti;lineage4.3.1;lineage4.9 1
lineage2.1;lineage4.3.2;lineage4.9 1
lineage4.9;lineage9 1
spoligotype Counts
spoligotype Count
None 229
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
ID Drug resistance Lineage Country iso2
SRR3675236 Other None
ERR278594 HR-TB lineage2.1;lineage4.9 None
ERR2229143 RR-TB lineage4.9 None
ERR4797201 Other lineage1.2.2.2 None
ERR4800341 Other lineage3 None
ERR4872094 MDR-TB lineage5.2 None
ERR736859 HR-TB M.canetti;lineage2.1;lineage4.9 None
ERR9786611 HR-TB lineage4.1.3 None
SRR3675581 Other lineage2.1;lineage4.9 None
SRR29681341 Sensitive lineage4.2.1.1 None
ERR736867 Other lineage2.1;lineage4.9 None
ERR502532 Other M.canetti;lineage2.1;lineage6.3 None
ERR323043 Other lineage2.1;lineage4.9 None
SRR29096246 Sensitive La1.7;lineage4.9 None
ERR8976043 HR-TB lineage2.1;lineage2.2;lineage6.3 None
SRR3675234 Other La1.6;La3;lineage4.6.4;lineage4.8.1;lineage4.9 None
ERR9786645 Other lineage4.6.2.2 None
SRR23961549 Other La1.2 None
SRR28240253 Sensitive lineage4.2.1.1 None
ERR3797014 Other La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 None
ERR11252558 Other lineage4.6.3;lineage4.9 None
SRR12416824 HR-TB lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 None
SRR3675554 HR-TB M.canetti;lineage2.1;lineage4.9;lineage6.3 None
ERR9786642 Other lineage4.1.2.1 None
SRR3675221 Other lineage4.9 None
ERR9787197 Other None
SRR6325442 HR-TB lineage2.1;lineage4.1.1.1;lineage6.3 None
ERR6359045 Other M.canetti;lineage4.1.4;lineage4.6.3;lineage4.9;lineage6.3 None
SRR3675539 HR-TB lineage4.9;lineage7 None
SRR7240492 HR-TB La1.7.1 None
ERR9786604 Other None
SRR3675555 HR-TB lineage2.1;lineage4.9;lineage7 None
SRR3675558 HR-TB M.canetti;lineage4.1.1.3;lineage6.3;lineage8 None
SRR5341333 Other lineage2.1;lineage4.9 None
SRR1196566 Other lineage4.9 None
ERR9786694 Other lineage4.1.2.1 None
ERR4828872 Sensitive lineage4.2;lineage4.9 None
ERR3283027 Other lineage2.1;lineage4.9;lineage6.3 None
SRR19304036 Other La3;lineage2.1;lineage4.9;lineage6.3 None
ERR9786569 Other lineage4.8 None
SRR1196583 Other lineage4.9 None
ERR3468607 Other lineage4.9 None
ERR3283026 HR-TB lineage4.2;lineage4.6.3;lineage4.9.1 None
ERR736871 HR-TB lineage2.1;lineage4.9;lineage6.3 None
ERR387051 Other lineage4.9 None
SRR3675214 Other lineage4.9 None
SRR3675506 HR-TB M.canetti;lineage2.1;lineage4.9 None
SRR1173629 Other lineage2.1;lineage4.9 None
ERR4811022 HR-TB M.canetti;lineage2.1;lineage4.9 None
ERR3797069 Other lineage4.9 None
SRR19303884 Other lineage2.1;lineage6.3 None
ERR4811142 RR-TB La3;lineage2.1;lineage4.9;lineage6.3 None
ERR5311101 MDR-TB M.canetti;lineage2.1;lineage4.9 None
SRR6832786 Sensitive lineage4.2.1.1 None
ERR124642 MDR-TB M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3 None
ERR3797028 HR-TB M.canetti;lineage4.9 None
ERR4816585 Other lineage2.2 None
SRR3675269 RR-TB lineage4.9 None
SRR3675467 Other lineage2.1;lineage4.9;lineage6.3 None
SRR15368973 Other lineage4.9 None
ERR3468544 Other lineage2.1;lineage4.9 None
ERR4816999 Other None
ERR4797588 MDR-TB lineage3 None
ERR3283020 HR-TB La1.6;La3;M.canetti;lineage2.1;lineage4.9 None
SRR29231479 RR-TB lineage4.9 None
SRR6325447 MDR-TB lineage2.1;lineage4.1.1.1;lineage6.3 None
SRR6046644 HR-TB La1.6;M.canetti;lineage4.8.1;lineage4.9;lineage6.3 None
SRR3675481 MDR-TB M.canetti;lineage2.1;lineage4.9;lineage6.3 None
ERR4811311 Other lineage2.1;lineage4.9;lineage6.3 None
SRR3675524 Other lineage4.9;lineage6.3 None
ERR3283044 Other lineage4 None
SRR7535086 Other None
SRR23961542 Other La1;lineage4.9 None
ERR5311089 HR-TB M.canetti;lineage2.1;lineage4.9 None
ERR2693230 HR-TB La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 None
ERR3804169 HR-TB lineage4.1.3 None
SRR1172728 RR-TB La3 None
ERR5311099 MDR-TB M.canetti;lineage2.1;lineage4.9 None
ERR702406 Other lineage2.1 None
SRR1172817 Other La3 None
ERR5336148 Other lineage2.1;lineage6.3 None
SRR9970978 Sensitive La1;lineage4.1.2 None
SRR7496509 Other None
SRR3675456 RR-TB lineage4.9;lineage7 None
SRR3675494 RR-TB lineage4.9 None
SRR5341302 Other La3;lineage2.1;lineage4.9 None
ERR1334034 Other lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 None
ERR5311102 MDR-TB M.canetti;lineage2.1;lineage4.9 None
ERR4798493 MDR-TB lineage2.2.1 None
ERR5311096 HR-TB M.canetti;lineage2.1;lineage4.9;lineage6.3 None
SRR3675517 Other La3;lineage2.1;lineage4.9;lineage6.3 None
SRR3675490 Other lineage2.1;lineage4.9;lineage6.3 None
SRR3675311 Other lineage4.9 None
SRR29017081 Sensitive lineage4.9 None
ERR5311090 MDR-TB M.canetti;lineage2.1;lineage4.9 None
ERR502912 Other lineage2.2.1 None
ERR4798262 HR-TB La1.2.BCG None
ERR3804155 Other lineage4.1.2.1 None
ERR3797070 Other lineage4.9 None
SRR20970016 Other lineage2.2 None
ERR9119500 MDR-TB lineage5.2 None
ERR9786843 Other None
SRR1184381 MDR-TB None
SRR6789621 Other lineage4.9 None
ERR234659 Other None
ERR4812238 Sensitive lineage4.1.4 pe
ERR176549 Other lineage4.3.4.2.1 None
ERR2513523 Sensitive lineage4.2.1.1 gb
ERR9786440 Other lineage4.1 None
SRR6046382 Sensitive lineage2.2.1 None
SRR1640750 Other None
SRR3675568 HR-TB M.canetti;lineage2.1;lineage4.9;lineage6.3;lineage8 None
SRR6045380 Other lineage2.1;lineage4.9 None
SRR3675444 HR-TB M.canetti;lineage2.1;lineage4.9 None
SRR18714838 Sensitive lineage4.2.1.1 None
SRR3675465 Other lineage4.9;lineage6.3 None
SRR6045242 Other lineage2.1;lineage4.9 None
SRR6045952 HR-TB M.canetti;lineage2.1;lineage4.9;lineage6.3 None
ERR4818021 Other La1.2.BCG;La1.8.1 None
SRR6046540 Other lineage2.1;lineage4.9 None
SRR3675571 HR-TB M.canetti;lineage4.2;lineage4.9 None
ERR6358755 Other lineage4.6.1.1 None
SRR18213713 HR-TB None
ERR3283024 Other La1.6;La3;M.canetti;lineage4.6.4;lineage4.9 None
ERR3797044 Other La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.9 None
SRR3742657 Pre-XDR-TB La3;M.canetti;lineage2.2.1 None
ERR3283019 Other lineage2.1;lineage4.9 None
ERR736874 Other La3;lineage2.1;lineage4.9 None
ERR5311083 HR-TB M.canetti;lineage2.1;lineage4.9 None
ERR5311081 MDR-TB M.canetti;lineage2.1;lineage4.9 None
SRR18003019 Other lineage2.2.1 None
ERR9786627 Other lineage4.1.2.1 None
ERR3797017 HR-TB La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 None
ERR5311100 MDR-TB M.canetti;lineage2.1;lineage4.9 None
SRR7496517 Other None
SRR3675495 Other lineage2.1;lineage4.9 None
SRR6044790 Other lineage2.1;lineage4.9 None
ERR4811105 HR-TB La3;lineage2.1;lineage4.9;lineage6.3 None
SRR6045526 Other lineage4.9 None
ERR2027263 Other lineage4 None
ERR5311078 MDR-TB M.canetti;lineage2.1;lineage4.9;lineage6.3 None
ERR161033 MDR-TB M.canetti;lineage2.1;lineage4.9 None
SRR1196546 Other lineage4.9 None
ERR11068198 Sensitive lineage4.2.1.1 None
ERR176793 Other lineage4.1.1.1 None
SRR3675561 Other M.canetti;lineage2.1;lineage4.9 None
ERR1023295 MDR-TB M.canetti;lineage2.1;lineage4.1.2.1 None
SRR3675464 HR-TB lineage2.1;lineage4.9;lineage6.3;lineage8 None
SRR6045948 MDR-TB M.canetti;lineage2.1;lineage4.9 None
SRR6325444 MDR-TB M.canetti;lineage2.1;lineage6.3 None
ERR4188350 HR-TB M.canetti;lineage2.1;lineage4.9 None
SRR3675518 MDR-TB M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 None
SRR29539183 Sensitive lineage4.2.1.1 None
ERR9117709 Other None
SRR1173400 Other lineage4.9 None
SRR12416840 MDR-TB lineage4.9 None
ERR4797054 Pre-XDR-TB lineage2.1 None
SRR7069427 Sensitive lineage4.2.1.1 None
SRR6079962 HR-TB lineage2.2.1.1 None
SRR6832356 Sensitive lineage4.2.1.1 None
SRR6832292 Sensitive lineage4.2.1.1 None
SRR3675320 MDR-TB M.canetti;lineage2.1;lineage4.3.1;lineage4.9 None
ERR3077978 RR-TB lineage1.1 None
SRR7131023 Other lineage4.1.2.1 None
SRR6325448 HR-TB M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 None
ERR2514692 Other None
SRR1172857 Other None
ERR4817060 Other None
ERR4814352 Other lineage2.2.1 None
ERR9786601 Other lineage4.1.2.1 None
ERR9786671 Other None
SRR12142341 HR-TB lineage2.1 None
ERR4819781 Other lineage2.2.1 None
SRR1184372 MDR-TB None
ERR553137 Sensitive lineage4.2.1.1 de
SRR3675572 Other None
SRR3675457 Other lineage4.9 None
ERR3797016 HR-TB M.canetti;lineage2.1;lineage4.9 None
SRR3675232 Other lineage4.1.2.1 None
SRR6785413 Other lineage2.2.1 None
ERR3283036 Other lineage2.1;lineage4.9 None
ERR4407463 HR-TB None
SRR1173778 Other lineage4.9 None
SRR25827418 XDR-TB lineage3.1;lineage9 None
ERR4188342 MDR-TB M.canetti;lineage2.1;lineage4.9 None
SRR3675508 Other lineage2.1;lineage4.9;lineage6.3 None
ERR4810741 HR-TB La3;lineage2.1;lineage6.3 None
SRR3675322 HR-TB M.canetti;lineage2.1;lineage4.1.4;lineage4.9 None
SRR3675275 Other lineage4.9 None
SRR3742665 HR-TB M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 None
ERR4817893 Other La3;lineage4.8 None
ERR2693257 Other La1.6;La3;M.canetti;lineage4.8.1;lineage4.9 None
ERR2693242 RR-TB lineage2.1;lineage4.9 None
ERR1063856 HR-TB M.canetti;lineage4.9;lineage9 None
ERR9787139 Other lineage6.3.1 None
ERR4811075 Other lineage2.1;lineage4.9;lineage6.3 None
SRR20969677 HR-TB La3;lineage2 None
SRR24256333 Sensitive lineage4.2.1.1 None
SRR1184388 Other lineage2.1;lineage4.9 None
SRR3675520 Other La1.7.X-unk4;lineage4.9 None
ERR4819932 Other lineage4.7 None
ERR2693245 HR-TB La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 None
ERR9786682 Other lineage4.1.2.1 None
ERR9117721 HR-TB La3;lineage1.1.2 None
ERR4821053 RR-TB lineage3 None
SRR20969708 HR-TB lineage2.2 None
SRR3675529 Other lineage2.1;lineage4.9;lineage6.3 None
SRR3675231 MDR-TB lineage4.9;lineage7 None
ERR2693231 Other La1.6;La3;lineage4.6.4;lineage4.9 None
ERR736863 HR-TB La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 None
SRR6325445 HR-TB M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 None
ERR1035138 MDR-TB lineage2.1;lineage4.9 None
SRR3675574 Other lineage4.6.3;lineage4.9;lineage6.3 None
ERR4815604 Other None
ERR9786444 Sensitive lineage4.8 None
SRR3675486 HR-TB M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 None
SRR6046066 Other lineage4.9 None
SRR3675216 Other lineage2.1;lineage4.9 None
SRR6789626 Other None
SRR29055629 MDR-TB La3;lineage2.2.1 None
ERR9119138 RR-TB M.canetti;lineage4.3.1;lineage4.9 None
ERR161037 Other lineage4.9 None
SRR3675248 Other lineage4.9 None
SRR1184380 Other lineage2.1;lineage4.9 None
SRR6045327 Other lineage2.1;lineage4.3.2;lineage4.9 None
SRR6046720 HR-TB lineage4.9;lineage9 None
ERR5311082 MDR-TB M.canetti;lineage2.1;lineage4.1.4;lineage4.9 None
SRR6831938 Sensitive lineage4.2.1.1 None
SRR6458423 HR-TB lineage2.2.1 None