lineage | Count |
---|---|
125 | |
La1.8.1 | 3 |
lineage2.1 | 2 |
lineage3 | 12 |
lineage4.5 | 2 |
lineage4.4.2 | 2 |
lineage2.2 | 7 |
lineage2 | 4 |
lineage4.1 | 3 |
lineage4 | 11 |
lineage4.8 | 9 |
lineage4.1.1.3 | 4 |
lineage4.1.1 | 3 |
lineage4.3.3 | 5 |
lineage4.3.4.2.1 | 4 |
lineage3;lineage2.1 | 1 |
lineage2.2.1 | 38 |
lineage4.1.2.1 | 29 |
lineage4.3 | 1 |
lineage4.9 | 83 |
lineage3.1 | 5 |
lineage2.2.2 | 2 |
lineage4.4.1.1 | 3 |
lineage4;lineage1.1.2 | 1 |
lineage4.4.1.2 | 1 |
lineage4.8;La3 | 1 |
lineage4.2.2.2 | 1 |
lineage4.9.1 | 1 |
lineage4;lineage1.1 | 1 |
lineage4.7 | 2 |
La1.7.1 | 1 |
lineage4.2.1 | 1 |
lineage2.2.1.1 | 7 |
lineage4.6.2.2 | 5 |
lineage1.1 | 1 |
lineage4.6.4 | 2 |
lineage5.2 | 2 |
La2 | 2 |
lineage4.1.2 | 1 |
lineage4.6.1.1 | 3 |
lineage4.3.2.1 | 2 |
lineage4.8.1 | 1 |
lineage1.1.1.1 | 1 |
lineage4.3.4 | 1 |
lineage6.1.1 | 2 |
lineage4.1.3 | 2 |
La1.3 | 1 |
La1.2 | 2 |
lineage1.2.2.2 | 1 |
lineage3.1.2 | 1 |
lineage1.1.3.2 | 2 |
lineage4.1.2.1.1 | 1 |
lineage4.3.2 | 2 |
lineage1.1.2 | 1 |
lineage4.8;lineage4.1 | 2 |
lineage6.2.3 | 1 |
lineage6.3.1 | 1 |
lineage3.1.2.2;lineage3.1.2.1 | 1 |
lineage4.6.1.2 | 1 |
La3 | 1 |
lineage4.9;lineage2.2 | 1 |
lineage4.4.1.1.1 | 1 |
lineage1.2.1.2 | 1 |
lineage4.3.4.1 | 1 |
lineage1.2.1.2.1 | 1 |
spoligotype | Count |
---|---|
None | 423 |
ID | Drug resistance | Lineage | Country iso2 | SRR1640750 | HR-TB | None | SRR1791696 | Other | La1.8.1 | None | SRR1710057 | Other | lineage2.1 | None | SRR17832802 | HR-TB | lineage3 | None | SRR18213713 | HR-TB | lineage4.5 | None | SRR20970008 | Sensitive | lineage4.4.2 | None | SRR18910194 | HR-TB | lineage2.2 | None | SRR20969677 | HR-TB | lineage2 | None | SRR19303884 | HR-TB | None | SRR19304036 | HR-TB | None | SRR3675464 | HR-TB | lineage4.1 | None | SRR22424765 | MDR-TB | lineage4 | None | ERR11081258 | Other | lineage4.8 | None | ERR11081257 | Other | lineage4.8 | None | SRR3675482 | HR-TB | None | SRR6325445 | HR-TB | None | ERR550636 | MDR-TB | lineage4.1.1.3 | None | ERR176793 | Other | lineage4.1.1 | None | SRR3675465 | HR-TB | None | ERR4813861 | Other | lineage4.3.3 | None | ERR1035239 | HR-TB | None | SRR3675221 | HR-TB | None | ERR161033 | HR-TB | None | ERR161034 | Other | lineage4.3.4.2.1 | None | ERR4814536 | MDR-TB | lineage3;lineage2.1 | None | ERR4814352 | HR-TB | lineage2.2.1 | None | SRR3675486 | HR-TB | None | SRR3416776 | Other | lineage2.1 | None | ERR161149 | Other | lineage4.3.4.2.1 | mw | ERR176549 | Other | lineage4.3.4.2.1 | None | SRR3675232 | Other | lineage4.1.2.1 | None | ERR176568 | Other | lineage4.3 | None | ERR176643 | HR-TB | None | SRR3675311 | Other | None | ERR176740 | HR-TB | None | SRR3675312 | HR-TB | lineage4 | None | SRR3675383 | HR-TB | None | SRR3675510 | Other | None | ERR4815752 | Other | lineage4.9 | None | ERR176751 | HR-TB | None | ERR3275220 | Other | lineage3 | nl | ERR2027290 | RR-TB | lineage3.1 | None | ERR2027263 | Other | lineage4 | None | ERR4816999 | Other | None | ERR212001 | HR-TB | None | ERR4817037 | Other | lineage4.9 | None | SRR3675571 | HR-TB | None | ERR212033 | HR-TB | None | SRR3675572 | Other | None | SRR3675574 | HR-TB | None | ERR4816466 | HR-TB | None | ERR216965 | HR-TB | lineage4.9 | None | SRR4033549 | HR-TB | lineage2.2.2 | None | SRR3742665 | HR-TB | None | ERR4816585 | Other | lineage2.2 | None | ERR4816551 | HR-TB | lineage4.1.1.3 | None | ERR4816559 | MDR-TB | lineage4.4.1.1 | None | ERR4816656 | HR-TB | None | ERR4818646 | Sensitive | lineage4.1.2.1 | None | ERR4817811 | Sensitive | lineage4.1.2.1 | None | ERR4817692 | HR-TB | lineage4;lineage1.1.2 | None | SRR7496472 | Other | None | ERR2513520 | Sensitive | lineage4.4.1.2 | gb | ERR4817896 | HR-TB | lineage2.2.1 | None | ERR4817893 | Other | lineage4.8;La3 | None | ERR553132 | MDR-TB | lineage4.1.2.1 | None | ERR4817915 | RR-TB | lineage4.9 | None | ERR234659 | HR-TB | None | ERR2229143 | Other | lineage4.1.1 | None | ERR2513470 | Other | lineage4.2.2.2 | None | ERR245758 | Other | lineage4.9.1 | None | ERR4818929 | HR-TB | None | ERR4820854 | Other | lineage4.1.2.1 | None | ERR2509673 | Other | lineage2.2.1 | None | ERR2446144 | Other | lineage3 | nl | ERR4819322 | Other | lineage4;lineage1.1 | None | SAMN02414850 | Other | lineage4.1.2.1 | None | ERR2514327 | HR-TB | lineage4.8 | None | SRR5341302 | HR-TB | None | ERR4819781 | Other | lineage2.2.1 | None | ERR2514692 | Other | None | SRR5341333 | HR-TB | None | ERR4820544 | Sensitive | lineage4.9 | None | SRR5341332 | Pre-XDR-TB | lineage3 | None | ERR4819932 | Other | lineage4.7 | None | ERR4821811 | RR-TB | lineage4.9 | None | ERR2515228 | Other | lineage2.2.1 | None | ERR4821053 | Other | lineage3 | None | SRR5341470 | HR-TB | None | ERR4821179 | Other | lineage4.1.2.1 | gb | ERR2693239 | HR-TB | None | ERR278594 | HR-TB | None | SRR6045526 | HR-TB | None | ERR2815606 | Other | La1.7.1 | None | SRR6046133 | HR-TB | None | SRR6044855 | Other | lineage4.9 | None | SRR6046066 | HR-TB | None | SRR6325442 | HR-TB | None | ERR4822193 | Sensitive | lineage4.2.1 | None | SRR6045555 | HR-TB | None | SRR6045952 | HR-TB | None | SRR6045327 | HR-TB | None | SRR6046225 | HR-TB | None | SRR6046397 | Other | None | SRR6325444 | HR-TB | None | ERR2446563 | Other | lineage2.2.1 | nl | ERR3275196 | Other | lineage2.2.1 | nl | SRR6079962 | HR-TB | lineage2.2.1.1 | None | SRR6046514 | HR-TB | None | SRR6325448 | HR-TB | None | SRR6046540 | HR-TB | None | SRR6325447 | HR-TB | None | SRR6458423 | HR-TB | lineage2.2.1 | None | SRR6458421 | MDR-TB | lineage2.2.1 | None | ERR4872119 | MDR-TB | lineage4.6.2.2 | None | SRR6397654 | HR-TB | lineage4.1.2.1 | None | ERR3077978 | Other | lineage1.1 | None | ERR4872102 | MDR-TB | lineage4.6.4 | None | ERR4872094 | MDR-TB | lineage5.2 | None | ERR4872096 | MDR-TB | lineage4.6.2.2 | None | ERR4831545 | Pre-XDR-TB | lineage2.2 | None | SRR6785267 | Other | lineage2.2.1 | None | ERR4831546 | HR-TB | lineage2.2 | None | SRR6831950 | Other | lineage4.3.3 | None | SRR6785227 | Other | lineage2.2.1 | None | SRR6785263 | Sensitive | lineage2.2.1 | None | SRR6789624 | MDR-TB | lineage4.1 | None | SRR6785413 | Other | lineage2.2.1 | None | SRR6785527 | Sensitive | lineage2.2.1 | None | ERR294248 | HR-TB | None | ERR323036 | HR-TB | None | SRR6982365 | Other | lineage2.2.1 | None | ERR323034 | HR-TB | lineage3.1 | None | SRR6789626 | Other | None | SRR6982246 | Sensitive | lineage4 | None | ERR294266 | HR-TB | None | ERR502524 | HR-TB | La2 | None | ERR502532 | HR-TB | None | ERR2199849 | Sensitive | lineage4.1.2.1 | de | ERR323038 | HR-TB | None | ERR5311099 | HR-TB | None | ERR5087596 | Other | La1.8.1 | None | SRR7131023 | Other | lineage4.1.2.1 | None | SRR7496509 | Other | None | SRR7496517 | Other | None | ERR502908 | HR-TB | lineage2.2.1 | None | ERR5311081 | HR-TB | None | ERR5311090 | HR-TB | None | SRR9971333 | MDR-TB | lineage4.1.1.3 | None | SRR9940962 | Sensitive | lineage4.9 | None | SRR7535086 | Other | None | SRR9970980 | Other | lineage4.1.2 | None | SRR7535047 | RR-TB | lineage4.6.1.1 | None | SRR9971112 | Other | lineage2.2.1 | None | SRR7585400 | MDR-TB | lineage3 | None | SRR9970981 | RR-TB | lineage4.3.2.1 | None | SRR9971046 | MDR-TB | lineage4.8 | None | SRR9971065 | RR-TB | lineage2.2.1 | None | SRR7585435 | Other | lineage4.9 | None | SRR9971114 | Other | lineage2.2.1 | None | ERR323043 | HR-TB | None | SRR9971122 | MDR-TB | lineage4.8 | None | SRR9971150 | RR-TB | lineage4.8.1 | None | SRR7765062 | Pre-XDR-TB | lineage4.1.2.1 | None | SRR9971113 | Other | lineage2.2.1 | None | ERR323044 | HR-TB | lineage4.3.4.2.1 | None | ERR323039 | HR-TB | None | ERR323041 | HR-TB | None | ERR323055 | HR-TB | None | ERR1023295 | HR-TB | lineage4.1.2.1 | None | ERR323053 | HR-TB | None | ERR323063 | HR-TB | None | ERR323054 | HR-TB | lineage3.1 | None | DRR185000 | Other | lineage1.1.1.1 | None | ERR1023502 | MDR-TB | lineage2.2.1 | None | ERR1035157 | Other | lineage4.9 | None | ERR3283017 | HR-TB | None | ERR10796631 | Other | lineage4.3.4 | None | ERR10796635 | Other | lineage4 | None | ERR3283027 | HR-TB | None | ERR3797023 | HR-TB | La1.8.1 | None | ERR3283048 | HR-TB | lineage4.9 | None | ERR3283051 | Other | lineage4.9 | None | ERR3468544 | HR-TB | None | ERR3797016 | HR-TB | None | ERR3283036 | HR-TB | None | ERR3470647 | Other | lineage3 | None | ERR3797058 | Other | lineage4.9 | None | ERR3797036 | HR-TB | None | ERR4407463 | HR-TB | None | ERR3797082 | Other | lineage4.9 | None | ERR3804155 | Other | lineage4.1.2.1 | None | ERR4188350 | HR-TB | None | ERR3797069 | Other | None | ERR3797083 | HR-TB | None | ERR3799304 | Other | lineage6.1.1 | None | ERR3804169 | HR-TB | lineage4.1.3 | None | ERR4407452 | Sensitive | lineage3 | None | ERR4769508 | RR-TB | lineage4.9 | None | ERR4769436 | Other | La1.3 | None | ERR4798504 | Other | lineage3 | None | ERR4797054 | Pre-XDR-TB | lineage2 | None | ERR4797588 | MDR-TB | lineage3 | None | ERR4772225 | Other | La1.2 | None | ERR4797201 | Other | lineage1.2.2.2 | None | ERR4798493 | MDR-TB | lineage2.2.1 | None | ERR4800527 | MDR-TB | lineage2.2.1 | None | ERR4799171 | Pre-XDR-TB | lineage4.8 | None | ERR4798648 | HR-TB | lineage3.1.2 | None | ERR4800341 | Other | lineage3 | None | ERR4811142 | MDR-TB | None | ERR4810741 | HR-TB | None | ERR4811022 | HR-TB | None | ERR4811105 | HR-TB | None | ERR702406 | HR-TB | None | ERR5987263 | MDR-TB | lineage2.2.1 | None | ERR6358837 | HR-TB | None | ERR6359045 | HR-TB | None | ERR6866125 | Sensitive | lineage4.1.2.1 | None | ERR702404 | HR-TB | None | ERR6198317 | Other | La1.2 | None | ERR6358755 | Other | lineage4.6.1.1 | None | ERR6358951 | HR-TB | lineage4 | None | ERR736865 | HR-TB | None | ERR736839 | Other | None | ERR7821126 | Sensitive | lineage1.1.3.2 | None | ERR760733 | MDR-TB | lineage4.1.2.1.1 | None | ERR772255 | MDR-TB | lineage4.3.2 | None | ERR736867 | HR-TB | None | ERR736874 | HR-TB | None | ERR7821123 | Other | lineage1.1.3.2 | None | ERR9119508 | MDR-TB | lineage4.6.4 | None | ERR8976043 | HR-TB | None | ERR9117709 | HR-TB | None | ERR9117721 | HR-TB | lineage1.1.2 | None | ERR9119502 | MDR-TB | lineage4.6.2.2 | None | ERR7821163 | Other | lineage2.2.1 | None | ERR7911670 | Pre-XDR-TB | lineage2.2 | None | ERR9117805 | Other | lineage4.3.2 | None | ERR9119733 | MDR-TB | lineage2.2.1 | None | ERR9119500 | MDR-TB | lineage5.2 | None | ERR9119525 | MDR-TB | lineage4.6.2.2 | None | ERR9786440 | Other | lineage4.1 | None | ERR9786421 | Other | lineage4.1.2.1 | None | ERR9786515 | Other | lineage4.1.2.1 | None | ERR9786507 | Sensitive | lineage4.7 | None | ERR9786526 | Other | lineage4.8;lineage4.1 | None | ERR9786525 | Other | lineage4.8;lineage4.1 | None | ERR9786601 | Other | lineage4.1.2.1 | None | ERR9786569 | Other | lineage4.8 | None | ERR9786617 | Other | lineage4.1.1 | None | ERR9786611 | HR-TB | lineage4.1.3 | None | ERR9786604 | Other | None | ERR9786671 | Other | None | ERR9786642 | Other | lineage4.1.2.1 | None | ERR9786645 | Other | lineage4.6.2.2 | None | ERR990545 | Other | lineage3 | None | ERR9786682 | Other | lineage4.1.2.1 | None | ERR9786843 | Other | None | ERR9786986 | HR-TB | lineage4.1.2.1 | None | ERR9787014 | Other | lineage6.1.1 | None | ERR9787061 | Sensitive | lineage6.2.3 | None | ERR9787139 | Other | lineage6.3.1 | None | ERR987729 | HR-TB | lineage3.1.2.2;lineage3.1.2.1 | None | ERR987733 | RR-TB | lineage4.6.1.1 | None | ERR9786694 | Other | lineage4.1.2.1 | None | ERR9787197 | Other | None | ERR983238 | MDR-TB | lineage2.2.1.1 | None | ERR987722 | HR-TB | None | SRR10315567 | Other | lineage2.2.1 | None | SRR069978 | Pre-XDR-TB | lineage2.2.2 | None | SRR10315751 | MDR-TB | lineage4.8 | None | SRR1049675 | HR-TB | lineage2.2.1 | None | SRR1049674 | HR-TB | lineage2.2.1 | None | SRR1162740 | Other | lineage4.1.2.1 | None | SRR1062880 | MDR-TB | lineage4.6.1.2 | None | SRR1062919 | HR-TB | lineage2.2.1 | None | SRR11342634 | MDR-TB | lineage4.8 | None | SRR11349147 | RR-TB | lineage4.3.2.1 | None | SRR1162864 | HR-TB | lineage4.1.2.1 | None | SRR1165423 | Other | lineage4.1.2.1 | None | SRR1163221 | HR-TB | lineage4.1.2.1 | None | SRR1165584 | Other | lineage4.1.2.1 | None | SRR1165506 | Other | lineage4.1.2.1 | None | SRR1167055 | Other | lineage4.1.2.1 | None | SRR1166821 | HR-TB | lineage4.1.2.1 | None | SRR1169194 | Other | None | SRR1167384 | Other | lineage4 | None | SRR1172807 | Sensitive | lineage4.9 | None | SRR1169249 | Other | La3 | None | SRR1172146 | Sensitive | lineage4.9 | None | SRR1172234 | Other | None | SRR1172310 | HR-TB | None | SRR1172717 | Other | lineage4.9 | None | SRR1172728 | MDR-TB | None | SRR1169306 | Other | None | SRR1172214 | HR-TB | lineage4.9 | None | SRR1173153 | HR-TB | None | SRR1172951 | Other | None | SRR1172987 | HR-TB | lineage4.9 | None | SRR1172817 | HR-TB | None | SRR1172844 | MDR-TB | lineage4.4.1.1 | None | SRR1172857 | MDR-TB | None | SRR1173118 | Other | None | SRR1173218 | Pre-XDR-TB | lineage4.3.3 | None | SRR1173185 | HR-TB | lineage4.9 | None | SRR1173166 | Other | lineage4.9 | None | SRR1173363 | HR-TB | None | SRR1173330 | Pre-XDR-TB | lineage4 | None | SRR1173706 | Other | lineage4.9 | None | SRR1173384 | Other | lineage4 | None | SRR1173400 | Other | None | SRR1173484 | Other | lineage4 | None | SRR1173562 | HR-TB | lineage4 | None | SRR1173633 | HR-TB | lineage4.9 | None | SRR1173629 | Other | None | SRR1173453 | Other | lineage4.4.1.1 | None | SRR1173515 | HR-TB | lineage4.9 | None | SRR1173778 | Other | None | SRR1175049 | RR-TB | None | SRR1173788 | Other | None | SRR1174897 | HR-TB | None | SRR1175512 | Sensitive | lineage4.9 | None | SRR1175074 | MDR-TB | None | SRR1175487 | Sensitive | lineage4.9 | None | SRR1175506 | Sensitive | lineage4.9 | None | SRR1175090 | Other | lineage4.9 | None | SRR1175513 | Other | lineage4.9 | None | SRR1180312 | Sensitive | lineage4.9 | None | SRR1180137 | Other | lineage2.2.1 | None | SRR1180148 | Sensitive | lineage4.9 | None | SRR1180147 | Other | lineage2.2.1.1 | None | SRR1180300 | Sensitive | lineage4.9 | None | SRR1180172 | Other | lineage2.2.1 | None | SRR1180375 | Sensitive | lineage4.9 | None | SRR1180345 | Other | lineage4.9 | None | SRR1180355 | Sensitive | lineage4.9 | None | SRR1180319 | Sensitive | lineage4.9 | None | SRR1180420 | Sensitive | lineage4.9 | None | SRR1180391 | Sensitive | lineage4.9 | None | SRR1180406 | Sensitive | lineage4.9 | None | SRR1180399 | Sensitive | lineage4.9 | None | SRR1180410 | Sensitive | lineage4.9;lineage2.2 | None | SRR1180413 | Sensitive | lineage4.9 | None | SRR1180446 | Other | lineage4.9 | None | SRR1180440 | Other | lineage4.9 | None | SRR1180444 | Sensitive | lineage4.9 | None | SRR1181020 | Other | lineage2.2.1 | None | SRR1181283 | Sensitive | lineage4.9 | None | SRR1181237 | Sensitive | lineage2.2 | None | SRR1181091 | Other | lineage2.2.1.1 | None | SRR1181368 | Other | lineage4.9 | None | SRR1181289 | Other | lineage2.2.1 | None | SRR1181325 | Sensitive | lineage4.9 | None | SRR1181349 | Sensitive | lineage4.4.1.1.1 | None | SRR1181351 | Sensitive | lineage4.9 | None | SRR1181402 | Sensitive | lineage4.9 | None | SRR1181390 | Sensitive | lineage2 | None | SRR1184024 | Other | lineage2.2.1.1 | None | SRR1183054 | Sensitive | lineage4.9 | None | SRR1183106 | Other | lineage2.2.1.1 | None | SRR1183144 | Other | lineage2.2.1 | None | SRR1183049 | Other | lineage2.2 | None | SRR1184021 | Sensitive | lineage4.9 | None | SRR1184381 | MDR-TB | None | SRR1184294 | HR-TB | None | SRR1184312 | HR-TB | lineage2.2.1 | None | SRR1184329 | MDR-TB | lineage4.9 | None | SRR1184298 | Pre-XDR-TB | lineage4.3.3 | None | SRR1184308 | Sensitive | lineage4.9 | None | SRR1184346 | HR-TB | lineage3.1 | None | SRR1184372 | MDR-TB | None | SRR1196478 | MDR-TB | lineage4.9 | None | SRR1184380 | HR-TB | None | SRR1184388 | Other | None | SRR1196474 | HR-TB | lineage3.1 | None | SRR1196566 | HR-TB | None | SRR1196494 | MDR-TB | None | SRR1196546 | HR-TB | None | SRR1196571 | Pre-XDR-TB | lineage4.3.3 | None | SRR11972425 | Pre-XDR-TB | lineage2.2.1 | None | SRR1196677 | HR-TB | lineage2 | None | SRR1196768 | MDR-TB | None | SRR12006550 | Other | lineage1.2.1.2 | None | SRR12142341 | HR-TB | None | SRR12416840 | MDR-TB | lineage4.9 | None | SRR13591342 | HR-TB | lineage4.1.1.3 | None | SRR12416824 | HR-TB | None | SRR13423544 | Other | lineage4.5 | None | SRR13423649 | Sensitive | lineage2.2.1 | None | SRR13583478 | HR-TB | lineage4.3.4.1 | None | SRR13837484 | Other | lineage4.9 | None | SRR13837666 | Sensitive | lineage4.9 | None | SRR13837699 | Sensitive | lineage4.9 | None | SRR13861163 | Sensitive | lineage4.9 | None | SRR13837695 | HR-TB | lineage4.9 | None | SRR13861146 | Sensitive | lineage4.9 | None | SRR13861261 | Sensitive | lineage4.9 | None | SRR13861235 | HR-TB | lineage4.9 | None | SRR13861288 | Other | lineage4.9 | None | SRR13861329 | Other | lineage4.9 | None | SRR13861386 | HR-TB | lineage4.9 | None | SRR13861372 | Other | lineage4.9 | None | SRR13861332 | Other | lineage4.9 | None | SRR13861424 | RR-TB | lineage4.9 | None | SRR13861399 | Other | lineage4.9 | None | SRR13861396 | HR-TB | lineage4.9 | None | SRR13861400 | Other | lineage4.9 | None | SRR13861413 | Sensitive | lineage4.9 | None | SRR13861415 | Other | lineage4.9 | None | SRR13861575 | Other | lineage4.9 | None | SRR13861439 | RR-TB | lineage4.9 | None | SRR13861510 | Other | lineage4.9 | None | SRR13861556 | Other | lineage4.9 | None | SRR13861573 | Other | lineage4.9 | None | SRR13861629 | RR-TB | lineage4.9 | None | SRR13888750 | Other | La2 | None | SRR13861646 | Other | lineage4.9 | None | SRR1510066 | Other | lineage1.2.1.2.1 | None | SRR15368973 | Other | None | SRR16157123 | Other | lineage4.9 | None | SRR15316595 | RR-TB | lineage4.4.2 | None | SRR15600376 | HR-TB | lineage2.2.1.1 | None |
---|