TB-Profiler result

Run: ERR4769436
Summary

Run ID: ERR4769436

Sample name:

Date: 01-04-2023 06:40:31

Number of reads: 1085162

Percentage reads mapped: 45.85

Strain: La1.3

Drug-resistance: Other

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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
La1 M.bovis None None 0.99
La1.3 M.bovis None None 0.96
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
rrs 1472644 n.799C>T non_coding_transcript_exon_variant 0.53 streptomycin
rrs 1473247 n.1402C>A non_coding_transcript_exon_variant 0.51 kanamycin, capreomycin, aminoglycosides, amikacin
rrs 1473329 n.1484G>T non_coding_transcript_exon_variant 0.41 kanamycin, capreomycin, aminoglycosides, amikacin
pncA 2289073 p.His57Asp missense_variant 1.0 pyrazinamide
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
gyrB 5752 c.513G>A synonymous_variant 1.0
gyrA 6406 c.-896C>T upstream_gene_variant 1.0
gyrB 6446 p.Ala403Ser missense_variant 1.0
gyrA 7362 p.Glu21Gln missense_variant 1.0
gyrA 7442 c.141G>C synonymous_variant 0.12
gyrA 7585 p.Ser95Thr missense_variant 1.0
gyrA 8285 c.984C>T synonymous_variant 1.0
gyrA 9143 c.1842T>C synonymous_variant 1.0
gyrA 9304 p.Gly668Asp missense_variant 1.0
fgd1 491742 c.960T>C synonymous_variant 1.0
rpoB 760157 c.351A>G synonymous_variant 0.13
rpoB 760184 c.378A>G synonymous_variant 0.21
rpoB 760235 c.429T>C synonymous_variant 0.23
rpoB 760244 c.438G>C synonymous_variant 0.21
rpoB 760256 c.450C>T synonymous_variant 0.14
rpoB 760274 p.Glu156Asp missense_variant 0.13
rpoB 760298 c.492G>C synonymous_variant 0.17
rpoB 760982 c.1176G>C synonymous_variant 0.18
rpoB 760991 c.1185G>T synonymous_variant 0.13
rpoB 760997 c.1191G>C synonymous_variant 0.18
rpoB 761015 c.1209G>C synonymous_variant 0.22
rpoB 761027 c.1221A>G synonymous_variant 0.22
rpoB 761036 c.1230G>C synonymous_variant 0.23
rpoB 761037 c.1231T>C synonymous_variant 0.25
rpoB 761051 c.1245G>T synonymous_variant 0.22
rpoB 761057 c.1251G>C synonymous_variant 0.21
rpoB 761060 c.1254C>G synonymous_variant 0.21
rpoB 761084 c.1278C>A synonymous_variant 0.21
rpoB 761088 c.1282_1283delAGinsTC synonymous_variant 0.22
rpoB 761097 c.1291_1293delAGCinsTCG synonymous_variant 0.26
rpoB 761102 c.1296A>G synonymous_variant 0.25
rpoB 761120 c.1314C>T synonymous_variant 0.22
rpoB 761126 c.1320G>C synonymous_variant 0.25
rpoB 761132 c.1326G>C synonymous_variant 0.19
rpoB 761133 c.1327T>C synonymous_variant 0.21
rpoB 761147 c.1341C>T synonymous_variant 0.19
rpoB 761150 c.1344A>C synonymous_variant 0.17
rpoB 761165 c.1359G>C synonymous_variant 0.19
rpoB 761180 c.1374A>G synonymous_variant 0.16
rpoB 761189 c.1383T>C synonymous_variant 0.17
rpoB 761195 c.1389G>C synonymous_variant 0.18
rpoB 761213 c.1407G>C synonymous_variant 0.21
rpoB 761234 c.1428G>C synonymous_variant 0.2
rpoB 761249 c.1443A>G synonymous_variant 0.2
rpoB 761264 c.1458C>G synonymous_variant 0.15
rpoB 761999 c.2193G>C synonymous_variant 0.16
rpoB 762000 c.2194_2195delTCinsAG synonymous_variant 0.16
rpoB 762003 p.Asn733Gln missense_variant 0.16
rpoB 762008 c.2202C>T synonymous_variant 0.15
rpoB 762014 c.2208C>G synonymous_variant 0.18
rpoB 762015 p.Glu737Gln missense_variant 0.15
rpoB 762020 p.Glu738Asp missense_variant 0.18
rpoB 762030 p.Thr742Ser missense_variant 0.28
rpoB 762053 c.2247T>C synonymous_variant 0.3
rpoB 762057 p.Ile751Val missense_variant 0.26
rpoB 762062 c.2256T>C synonymous_variant 0.26
rpoB 762065 c.2259T>G synonymous_variant 0.21
rpoB 762080 c.2274G>C synonymous_variant 0.33
rpoB 762083 c.2277T>C synonymous_variant 0.3
rpoB 762084 p.Ala760Pro missense_variant 0.29
rpoB 762098 c.2292C>G synonymous_variant 0.38
rpoB 762101 c.2295C>G synonymous_variant 0.3
rpoB 762114 p.Ile770Val missense_variant 0.46
rpoB 762122 p.Asp772Glu missense_variant 0.43
rpoB 762125 p.Glu773Asp missense_variant 0.33
rpoB 762128 c.2322G>C synonymous_variant 0.48
rpoB 762134 c.2328C>G synonymous_variant 0.34
rpoB 762140 c.2334G>C synonymous_variant 0.5
rpoB 762143 c.2337T>C synonymous_variant 0.51
rpoB 762149 c.2343G>C synonymous_variant 0.49
rpoB 762156 p.Val784Ile missense_variant 0.45
rpoB 762176 c.2370T>C synonymous_variant 0.44
rpoB 762177 p.Arg791Gly missense_variant 0.33
rpoB 762181 p.Asp792Ala missense_variant 0.32
rpoB 762185 c.2379G>C synonymous_variant 0.42
rpoB 762189 p.Ile795Val missense_variant 0.37
rpoB 762209 c.2403C>G synonymous_variant 0.44
rpoB 762218 c.2412T>C synonymous_variant 0.36
rpoB 762233 c.2427G>C synonymous_variant 0.34
rpoB 762245 c.2439G>C synonymous_variant 0.35
rpoB 762248 c.2442G>C synonymous_variant 0.26
rpoB 762254 c.2448T>C synonymous_variant 0.26
rpoB 762257 c.2451C>G synonymous_variant 0.24
rpoB 762266 c.2460T>C synonymous_variant 0.18
rpoB 762275 c.2469C>G synonymous_variant 0.21
rpoB 762293 c.2487T>G synonymous_variant 0.15
rpoB 762299 c.2493G>C synonymous_variant 0.12
rpoB 762308 c.2502G>T synonymous_variant 0.13
rpoC 762917 c.-453C>G upstream_gene_variant 0.12
rpoC 762929 c.-441G>C upstream_gene_variant 0.12
rpoC 762989 c.-381G>C upstream_gene_variant 0.15
rpoC 763031 c.-339T>C upstream_gene_variant 1.0
rpoC 763462 c.93G>C synonymous_variant 0.17
rpoC 763468 c.99G>C synonymous_variant 0.2
rpoC 763483 c.114G>C synonymous_variant 0.19
rpoC 763486 c.117T>C synonymous_variant 0.23
rpoC 763492 c.123G>C synonymous_variant 0.25
rpoC 763504 c.135C>A synonymous_variant 0.2
rpoC 763507 c.138G>C synonymous_variant 0.24
rpoC 763528 c.159G>C synonymous_variant 0.34
rpoC 763534 c.165T>C synonymous_variant 0.32
rpoC 763537 c.168C>G synonymous_variant 0.32
rpoC 763546 c.177A>G synonymous_variant 0.33
rpoC 763570 c.201G>C synonymous_variant 0.28
rpoC 763618 c.249C>G synonymous_variant 0.3
rpoC 763622 p.Ala85Ser missense_variant 0.29
rpoC 763642 c.273G>C synonymous_variant 0.29
rpoC 763660 c.291T>C synonymous_variant 0.31
rpoC 763669 c.300C>G synonymous_variant 0.27
rpoC 763675 c.306C>G synonymous_variant 0.25
rpoC 763686 p.Tyr106Phe missense_variant 0.24
rpoC 763696 c.327T>C synonymous_variant 0.26
rpoC 763708 c.339G>C synonymous_variant 0.22
rpoC 763711 c.342G>C synonymous_variant 0.22
rpoC 763714 c.345G>C synonymous_variant 0.22
rpoC 763717 c.348T>C synonymous_variant 0.25
rpoC 763723 c.354G>C synonymous_variant 0.24
rpoC 763729 c.360G>C synonymous_variant 0.24
rpoC 763744 c.375G>C synonymous_variant 0.18
rpoC 764365 c.996C>T synonymous_variant 0.22
rpoC 764371 c.1002G>C synonymous_variant 0.2
rpoC 764377 c.1008C>G synonymous_variant 0.2
rpoC 764387 c.1018_1020delTTGinsCTC synonymous_variant 0.22
rpoC 764405 c.1036_1038delAGGinsCGC synonymous_variant 0.24
rpoC 764419 c.1050C>G synonymous_variant 0.14
rpoC 764428 c.1059G>C synonymous_variant 0.19
rpoC 764431 c.1062G>C synonymous_variant 0.21
rpoC 764434 c.1065A>G synonymous_variant 0.21
rpoC 764435 c.1066_1068delAGGinsCGT synonymous_variant 0.19
rpoC 764441 p.Ile358Leu missense_variant 0.19
rpoC 764446 c.1077T>C synonymous_variant 0.22
rpoC 764461 c.1092A>G synonymous_variant 0.24
rpoC 764491 c.1122G>C synonymous_variant 0.15
rpoC 764497 c.1128A>G synonymous_variant 0.14
rpoC 764498 p.Ser377Ala missense_variant 0.18
rpoC 764503 c.1134G>C synonymous_variant 0.17
rpoC 764507 p.Ala380Ser missense_variant 0.19
rpoC 764521 c.1152T>C synonymous_variant 0.23
rpoC 764530 c.1161C>T synonymous_variant 0.17
rpoC 764533 c.1164C>T synonymous_variant 0.16
rpoC 764536 c.1167G>T synonymous_variant 0.22
rpoC 764539 c.1170C>G synonymous_variant 0.25
rpoC 764548 c.1179G>C synonymous_variant 0.19
rpoC 764560 c.1191T>C synonymous_variant 0.25
rpoC 764572 c.1203G>C synonymous_variant 0.19
rpoC 764573 p.Leu402Ile missense_variant 0.18
rpoC 764578 c.1209C>G synonymous_variant 0.22
rpoC 764581 c.1212T>C synonymous_variant 0.27
rpoC 764582 p.Leu405Met missense_variant 0.27
rpoC 764602 c.1233C>T synonymous_variant 0.25
rpoC 764605 c.1236G>T synonymous_variant 0.23
rpoC 764611 c.1242G>T synonymous_variant 0.29
rpoC 764632 c.1263T>C synonymous_variant 0.29
rpoC 764650 c.1281G>T synonymous_variant 0.38
rpoC 764662 c.1293G>C synonymous_variant 0.34
rpoC 764695 c.1326T>C synonymous_variant 0.24
rpoC 764701 c.1332C>G synonymous_variant 0.3
rpoC 764706 p.Leu446His missense_variant 0.25
rpoC 764716 c.1347G>C synonymous_variant 0.36
rpoC 764737 c.1368G>C synonymous_variant 0.27
rpoC 764746 c.1377G>C synonymous_variant 0.32
rpoC 764749 c.1380G>C synonymous_variant 0.38
rpoC 764752 c.1383G>C synonymous_variant 0.41
rpoC 764764 c.1395T>C synonymous_variant 0.32
rpoC 764780 c.1411_1412delAGinsTC synonymous_variant 0.16
rpoC 764785 c.1416C>G synonymous_variant 0.33
rpoC 764797 c.1428G>C synonymous_variant 0.36
rpoC 764803 c.1434C>T synonymous_variant 0.17
rpoC 764804 c.1436_1437delAG frameshift_variant 0.18
rpoC 764812 c.1443C>G synonymous_variant 0.3
rpoC 764813 p.Gln482Val missense_variant 0.18
rpoC 764824 c.1455T>C synonymous_variant 0.26
rpoC 764843 p.Ala492Thr missense_variant 0.24
rpoC 764854 c.1485G>C synonymous_variant 0.17
rpoC 764858 c.1489T>C synonymous_variant 0.21
rpoC 764863 c.1494G>C synonymous_variant 0.18
rpoC 764869 c.1500C>T synonymous_variant 0.21
rpoC 765908 p.Leu847Ala missense_variant 0.12
rpoC 765947 c.2578T>C synonymous_variant 0.14
mmpL5 775639 p.Ile948Val missense_variant 1.0
mmpL5 776100 p.Thr794Ile missense_variant 1.0
rpsL 781395 c.-165T>C upstream_gene_variant 1.0
rpsL 781781 c.222G>C synonymous_variant 0.12
rplC 800633 c.-176T>C upstream_gene_variant 0.14
rplC 800648 c.-161A>G upstream_gene_variant 0.16
rplC 800654 c.-155T>C upstream_gene_variant 0.17
rplC 800672 c.-137G>C upstream_gene_variant 0.16
rplC 800703 c.-106T>C upstream_gene_variant 0.12
fbiC 1302899 c.-32A>G upstream_gene_variant 1.0
rrs 1471659 n.-187C>T upstream_gene_variant 1.0
rrs 1471922 n.77G>C non_coding_transcript_exon_variant 0.14
rrs 1471925 n.80T>G non_coding_transcript_exon_variant 0.12
rrs 1471928 n.83T>G non_coding_transcript_exon_variant 0.12
rrs 1471929 n.84C>G non_coding_transcript_exon_variant 0.12
rrs 1471932 n.87A>G non_coding_transcript_exon_variant 0.13
rrs 1471985 n.140T>C non_coding_transcript_exon_variant 0.26
rrs 1471986 n.141C>T non_coding_transcript_exon_variant 0.26
rrs 1472028 n.183A>T non_coding_transcript_exon_variant 0.21
rrs 1472029 n.184C>T non_coding_transcript_exon_variant 0.21
rrs 1472030 n.185G>C non_coding_transcript_exon_variant 0.2
rrs 1472033 n.188A>C non_coding_transcript_exon_variant 0.2
rrs 1472034 n.189T>C non_coding_transcript_exon_variant 0.2
rrs 1472040 n.195T>G non_coding_transcript_exon_variant 0.2
rrs 1472043 n.198T>G non_coding_transcript_exon_variant 0.21
rrs 1472045 n.200T>G non_coding_transcript_exon_variant 0.21
rrs 1472054 n.210_212delCGC non_coding_transcript_exon_variant 0.24
rrs 1472061 n.216A>T non_coding_transcript_exon_variant 0.23
rrs 1472062 n.217G>T non_coding_transcript_exon_variant 0.23
rrs 1472068 n.223T>C non_coding_transcript_exon_variant 0.24
rrs 1472069 n.224G>A non_coding_transcript_exon_variant 0.23
rrs 1472106 n.261G>A non_coding_transcript_exon_variant 0.31
rrs 1472108 n.263C>T non_coding_transcript_exon_variant 0.45
rrs 1472148 n.303T>C non_coding_transcript_exon_variant 0.56
rrs 1472150 n.305T>A non_coding_transcript_exon_variant 0.63
rrs 1472172 n.327T>C non_coding_transcript_exon_variant 0.65
rrs 1472225 n.380C>A non_coding_transcript_exon_variant 0.43
rrs 1472251 n.406G>A non_coding_transcript_exon_variant 0.63
rrs 1472259 n.414C>A non_coding_transcript_exon_variant 0.29
rrs 1472286 n.441C>G non_coding_transcript_exon_variant 0.22
rrs 1472288 n.443A>C non_coding_transcript_exon_variant 0.15
rrs 1472289 n.444T>G non_coding_transcript_exon_variant 0.25
rrs 1472290 n.445C>G non_coding_transcript_exon_variant 0.26
rrs 1472293 n.448C>A non_coding_transcript_exon_variant 0.22
rrs 1472297 n.453_465delGTCCGGGTTCTCT non_coding_transcript_exon_variant 0.38
rrs 1472315 n.470T>G non_coding_transcript_exon_variant 0.36
rrs 1472324 n.479G>C non_coding_transcript_exon_variant 0.21
rrs 1472325 n.480G>C non_coding_transcript_exon_variant 0.24
rrs 1472326 n.481T>G non_coding_transcript_exon_variant 0.14
rrs 1472328 n.483G>C non_coding_transcript_exon_variant 0.21
rrs 1472344 n.499C>T non_coding_transcript_exon_variant 0.2
rrs 1472379 n.534T>C non_coding_transcript_exon_variant 0.18
rrs 1472382 n.537G>A non_coding_transcript_exon_variant 0.2
rrs 1472400 n.555C>T non_coding_transcript_exon_variant 0.19
rrs 1472422 n.577T>C non_coding_transcript_exon_variant 0.47
rrs 1472435 n.590T>C non_coding_transcript_exon_variant 0.36
rrs 1472437 n.592T>G non_coding_transcript_exon_variant 0.13
rrs 1472446 n.601T>A non_coding_transcript_exon_variant 0.42
rrs 1472448 n.603T>C non_coding_transcript_exon_variant 0.29
rrs 1472450 n.605A>G non_coding_transcript_exon_variant 0.42
rrs 1472451 n.606C>A non_coding_transcript_exon_variant 0.12
rrs 1472452 n.607G>A non_coding_transcript_exon_variant 0.32
rrs 1472456 n.611T>C non_coding_transcript_exon_variant 0.46
rrs 1472460 n.615T>C non_coding_transcript_exon_variant 0.13
rrs 1472461 n.616G>T non_coding_transcript_exon_variant 0.14
rrs 1472462 n.617T>C non_coding_transcript_exon_variant 0.46
rrs 1472464 n.619A>G non_coding_transcript_exon_variant 0.32
rrs 1472467 n.622G>T non_coding_transcript_exon_variant 0.46
rrs 1472471 n.626G>A non_coding_transcript_exon_variant 0.39
rrs 1472489 n.644A>C non_coding_transcript_exon_variant 0.32
rrs 1472494 n.649A>G non_coding_transcript_exon_variant 0.26
rrs 1472496 n.651T>G non_coding_transcript_exon_variant 0.25
rrs 1472498 n.653C>T non_coding_transcript_exon_variant 0.28
rrs 1472530 n.685G>A non_coding_transcript_exon_variant 0.32
rrs 1472558 n.713G>A non_coding_transcript_exon_variant 0.27
rrs 1472569 n.724G>A non_coding_transcript_exon_variant 0.29
rrs 1472581 n.736A>C non_coding_transcript_exon_variant 0.31
rrs 1472583 n.738T>C non_coding_transcript_exon_variant 0.28
rrs 1472607 n.762G>A non_coding_transcript_exon_variant 0.45
rrs 1472612 n.767G>T non_coding_transcript_exon_variant 0.22
rrs 1472655 n.810G>T non_coding_transcript_exon_variant 0.52
rrs 1472660 n.815T>C non_coding_transcript_exon_variant 0.74
rrs 1472661 n.816A>G non_coding_transcript_exon_variant 0.26
rrs 1472685 n.840G>A non_coding_transcript_exon_variant 0.43
rrs 1472687 n.842A>T non_coding_transcript_exon_variant 0.43
rrs 1472697 n.852T>C non_coding_transcript_exon_variant 0.43
rrs 1472701 n.856T>A non_coding_transcript_exon_variant 0.48
rrs 1472713 n.868T>C non_coding_transcript_exon_variant 0.24
rrs 1472714 n.869A>G non_coding_transcript_exon_variant 0.75
rrs 1472790 n.945T>C non_coding_transcript_exon_variant 0.2
rrs 1472824 n.979T>A non_coding_transcript_exon_variant 0.17
rrs 1472825 n.980G>A non_coding_transcript_exon_variant 0.16
rrs 1472828 n.983T>C non_coding_transcript_exon_variant 0.15
rrs 1472837 n.992C>T non_coding_transcript_exon_variant 0.23
rrs 1472840 n.995A>C non_coding_transcript_exon_variant 0.25
rrs 1472846 n.1001C>A non_coding_transcript_exon_variant 0.24
rrs 1472847 n.1002G>C non_coding_transcript_exon_variant 0.23
rrs 1472849 n.1004C>G non_coding_transcript_exon_variant 0.23
rrs 1472850 n.1005T>C non_coding_transcript_exon_variant 0.23
rrs 1472857 n.1012A>G non_coding_transcript_exon_variant 0.2
rrs 1472858 n.1013G>T non_coding_transcript_exon_variant 0.2
rrs 1472860 n.1015C>G non_coding_transcript_exon_variant 0.2
rrs 1472861 n.1016G>T non_coding_transcript_exon_variant 0.2
rrs 1472875 n.1030T>G non_coding_transcript_exon_variant 0.18
rrs 1472878 n.1033G>A non_coding_transcript_exon_variant 0.18
rrs 1472879 n.1034T>G non_coding_transcript_exon_variant 0.18
rrs 1472880 n.1035G>A non_coding_transcript_exon_variant 0.23
rrs 1472952 n.1107T>C non_coding_transcript_exon_variant 0.52
rrs 1472956 n.1111T>C non_coding_transcript_exon_variant 0.58
rrs 1472957 n.1112C>T non_coding_transcript_exon_variant 0.18
rrs 1472969 n.1124A>G non_coding_transcript_exon_variant 0.36
rrs 1472970 n.1125C>G non_coding_transcript_exon_variant 0.36
rrs 1472973 n.1128A>T non_coding_transcript_exon_variant 0.41
rrs 1472977 n.1132G>C non_coding_transcript_exon_variant 0.35
rrs 1472978 n.1133T>C non_coding_transcript_exon_variant 0.35
rrs 1472982 n.1137G>A non_coding_transcript_exon_variant 0.12
rrs 1472987 n.1142G>A non_coding_transcript_exon_variant 0.54
rrs 1472989 n.1144G>A non_coding_transcript_exon_variant 0.15
rrs 1472990 n.1145A>G non_coding_transcript_exon_variant 0.6
rrs 1473035 n.1190G>A non_coding_transcript_exon_variant 0.64
rrs 1473055 n.1210C>T non_coding_transcript_exon_variant 0.62
rrs 1473056 n.1211A>T non_coding_transcript_exon_variant 0.63
rrs 1473066 n.1221A>G non_coding_transcript_exon_variant 0.58
rrs 1473088 n.1243A>G non_coding_transcript_exon_variant 0.21
rrs 1473100 n.1255G>A non_coding_transcript_exon_variant 0.7
rrs 1473104 n.1259C>T non_coding_transcript_exon_variant 0.62
rrs 1473105 n.1260G>A non_coding_transcript_exon_variant 0.42
rrs 1473121 n.1276T>C non_coding_transcript_exon_variant 0.7
rrs 1473122 n.1277T>A non_coding_transcript_exon_variant 0.5
rrs 1473123 n.1278A>T non_coding_transcript_exon_variant 0.2
rrs 1473145 n.1300C>T non_coding_transcript_exon_variant 0.49
rrs 1473166 n.1321G>A non_coding_transcript_exon_variant 0.46
rrs 1473252 n.1407T>C non_coding_transcript_exon_variant 0.48
rrs 1473276 n.1431A>G non_coding_transcript_exon_variant 0.58
rrs 1473277 n.1432G>A non_coding_transcript_exon_variant 0.19
rrs 1473283 n.1438T>C non_coding_transcript_exon_variant 0.39
rrs 1473301 n.1456T>C non_coding_transcript_exon_variant 0.55
rrs 1473315 n.1470T>C non_coding_transcript_exon_variant 0.42
rrs 1473316 n.1471C>T non_coding_transcript_exon_variant 0.42
rrl 1473731 n.74T>A non_coding_transcript_exon_variant 0.12
rrl 1473756 n.99G>T non_coding_transcript_exon_variant 0.28
rrl 1473757 n.100T>G non_coding_transcript_exon_variant 0.29
rrl 1473758 n.101G>T non_coding_transcript_exon_variant 0.29
rrl 1473768 n.111A>G non_coding_transcript_exon_variant 0.13
rrl 1473806 n.149C>T non_coding_transcript_exon_variant 0.37
rrl 1473832 n.175C>T non_coding_transcript_exon_variant 0.34
rrl 1473833 n.176_177insT non_coding_transcript_exon_variant 0.37
rrl 1473844 n.187C>T non_coding_transcript_exon_variant 0.36
rrl 1473870 n.213G>A non_coding_transcript_exon_variant 0.14
rrl 1473871 n.214T>C non_coding_transcript_exon_variant 0.14
rrl 1473876 n.219G>A non_coding_transcript_exon_variant 0.13
rrl 1473898 n.241C>T non_coding_transcript_exon_variant 0.14
rrl 1474124 n.467G>C non_coding_transcript_exon_variant 0.16
rrl 1474135 n.478G>A non_coding_transcript_exon_variant 0.23
rrl 1474142 n.485C>G non_coding_transcript_exon_variant 0.3
rrl 1474151 n.494C>T non_coding_transcript_exon_variant 0.33
rrl 1474153 n.496C>T non_coding_transcript_exon_variant 0.24
rrl 1474166 n.509G>A non_coding_transcript_exon_variant 0.23
rrl 1474174 n.517A>G non_coding_transcript_exon_variant 0.21
rrl 1474183 n.526T>C non_coding_transcript_exon_variant 0.33
rrl 1474184 n.527C>T non_coding_transcript_exon_variant 0.33
rrl 1474186 n.529A>G non_coding_transcript_exon_variant 0.29
rrl 1474201 n.544T>C non_coding_transcript_exon_variant 0.36
rrl 1474202 n.545T>A non_coding_transcript_exon_variant 0.29
rrl 1474218 n.561T>A non_coding_transcript_exon_variant 0.39
rrl 1474220 n.563G>A non_coding_transcript_exon_variant 0.26
rrl 1474249 n.592G>T non_coding_transcript_exon_variant 0.53
rrl 1474266 n.609T>C non_coding_transcript_exon_variant 0.27
rrl 1474269 n.612C>T non_coding_transcript_exon_variant 0.31
rrl 1474280 n.623C>T non_coding_transcript_exon_variant 0.17
rrl 1474281 n.624A>G non_coding_transcript_exon_variant 0.25
rrl 1474286 n.630_631insGCGCAT non_coding_transcript_exon_variant 0.15
rrl 1474291 n.635_646delTTCCTCTCCGGA non_coding_transcript_exon_variant 0.26
rrl 1474306 n.649A>C non_coding_transcript_exon_variant 0.24
rrl 1474307 n.650G>T non_coding_transcript_exon_variant 0.19
rrl 1474309 n.653delT non_coding_transcript_exon_variant 0.27
rrl 1474316 n.659T>C non_coding_transcript_exon_variant 0.22
rrl 1474317 n.660G>A non_coding_transcript_exon_variant 0.18
rrl 1474348 n.691C>T non_coding_transcript_exon_variant 0.37
rrl 1474351 n.694G>C non_coding_transcript_exon_variant 0.25
rrl 1474353 n.696A>G non_coding_transcript_exon_variant 0.24
rrl 1474354 n.697C>T non_coding_transcript_exon_variant 0.16
rrl 1474355 n.698A>C non_coding_transcript_exon_variant 0.14
rrl 1474356 n.699T>A non_coding_transcript_exon_variant 0.14
rrl 1474359 n.702C>G non_coding_transcript_exon_variant 0.15
rrl 1474362 n.705A>G non_coding_transcript_exon_variant 0.29
rrl 1474374 n.717T>G non_coding_transcript_exon_variant 0.12
rrl 1474381 n.724T>A non_coding_transcript_exon_variant 0.14
rrl 1474387 n.730C>T non_coding_transcript_exon_variant 0.22
rrl 1474402 n.745T>C non_coding_transcript_exon_variant 0.18
rrl 1474454 n.797G>A non_coding_transcript_exon_variant 0.13
rrl 1474466 n.809G>A non_coding_transcript_exon_variant 0.12
rrl 1474476 n.819C>G non_coding_transcript_exon_variant 0.19
rrl 1474483 n.826C>G non_coding_transcript_exon_variant 0.2
rrl 1474488 n.831G>T non_coding_transcript_exon_variant 0.21
rrl 1474496 n.839C>A non_coding_transcript_exon_variant 0.22
rrl 1474497 n.840G>C non_coding_transcript_exon_variant 0.21
rrl 1474506 n.849C>G non_coding_transcript_exon_variant 0.19
rrl 1474507 n.850G>T non_coding_transcript_exon_variant 0.19
rrl 1474516 n.859C>A non_coding_transcript_exon_variant 0.25
rrl 1474527 n.870T>C non_coding_transcript_exon_variant 0.19
rrl 1474528 n.871T>A non_coding_transcript_exon_variant 0.18
rrl 1474529 n.872A>G non_coding_transcript_exon_variant 0.2
rrl 1474537 n.880G>A non_coding_transcript_exon_variant 0.51
rrl 1474540 n.883T>C non_coding_transcript_exon_variant 0.2
rrl 1474541 n.884G>T non_coding_transcript_exon_variant 0.18
rrl 1474542 n.885A>G non_coding_transcript_exon_variant 0.17
rrl 1474551 n.894G>C non_coding_transcript_exon_variant 0.33
rrl 1474558 n.901G>T non_coding_transcript_exon_variant 0.35
rrl 1474583 n.926C>T non_coding_transcript_exon_variant 0.35
rrl 1474626 n.969T>C non_coding_transcript_exon_variant 0.55
rrl 1474627 n.970G>A non_coding_transcript_exon_variant 0.48
rrl 1474632 n.975G>T non_coding_transcript_exon_variant 0.52
rrl 1474673 n.1016T>C non_coding_transcript_exon_variant 0.18
rrl 1474676 n.1019T>A non_coding_transcript_exon_variant 0.58
rrl 1474734 n.1077G>T non_coding_transcript_exon_variant 0.6
rrl 1474753 n.1097delC non_coding_transcript_exon_variant 0.62
rrl 1474760 n.1103A>G non_coding_transcript_exon_variant 0.65
rrl 1474777 n.1120T>C non_coding_transcript_exon_variant 0.55
rrl 1474779 n.1122G>A non_coding_transcript_exon_variant 0.59
rrl 1474794 n.1137C>T non_coding_transcript_exon_variant 0.69
rrl 1474812 n.1155G>A non_coding_transcript_exon_variant 0.14
rrl 1474823 n.1166C>G non_coding_transcript_exon_variant 0.62
rrl 1474827 n.1170C>T non_coding_transcript_exon_variant 0.56
rrl 1474831 n.1174A>C non_coding_transcript_exon_variant 0.54
rrl 1474904 n.1247G>C non_coding_transcript_exon_variant 0.32
rrl 1474905 n.1248T>C non_coding_transcript_exon_variant 0.3
rrl 1474913 n.1256T>C non_coding_transcript_exon_variant 0.28
rrl 1474932 n.1275C>T non_coding_transcript_exon_variant 0.19
rrl 1475060 n.1404delC non_coding_transcript_exon_variant 0.21
rrl 1475065 n.1408G>A non_coding_transcript_exon_variant 0.21
rrl 1475067 n.1410A>G non_coding_transcript_exon_variant 0.22
rrl 1475068 n.1411A>G non_coding_transcript_exon_variant 0.16
rrl 1475076 n.1419C>A non_coding_transcript_exon_variant 0.22
rrl 1475078 n.1421T>C non_coding_transcript_exon_variant 0.15
rrl 1475079 n.1422T>C non_coding_transcript_exon_variant 0.2
rrl 1475081 n.1424C>T non_coding_transcript_exon_variant 0.2
rrl 1475090 n.1433A>T non_coding_transcript_exon_variant 0.24
rrl 1475104 n.1447T>A non_coding_transcript_exon_variant 0.2
rrl 1475113 n.1456C>T non_coding_transcript_exon_variant 0.26
rrl 1475114 n.1457C>T non_coding_transcript_exon_variant 0.27
rrl 1475116 n.1459G>A non_coding_transcript_exon_variant 0.26
rrl 1475124 n.1467A>T non_coding_transcript_exon_variant 0.19
rrl 1475129 n.1472G>A non_coding_transcript_exon_variant 0.23
rrl 1475174 n.1517C>G non_coding_transcript_exon_variant 0.17
rrl 1475176 n.1519G>A non_coding_transcript_exon_variant 0.16
rrl 1475436 n.1779C>G non_coding_transcript_exon_variant 0.13
rrl 1475443 n.1786G>A non_coding_transcript_exon_variant 0.13
rrl 1475452 n.1795C>A non_coding_transcript_exon_variant 0.19
rrl 1475460 n.1803A>G non_coding_transcript_exon_variant 0.21
rrl 1475475 n.1818C>T non_coding_transcript_exon_variant 0.24
rrl 1475479 n.1822C>T non_coding_transcript_exon_variant 0.26
rrl 1475480 n.1823A>T non_coding_transcript_exon_variant 0.26
rrl 1475481 n.1824C>G non_coding_transcript_exon_variant 0.26
rrl 1475482 n.1825A>G non_coding_transcript_exon_variant 0.26
rrl 1475483 n.1826C>T non_coding_transcript_exon_variant 0.26
rrl 1475526 n.1869C>A non_coding_transcript_exon_variant 0.41
rrl 1475532 n.1875A>G non_coding_transcript_exon_variant 0.3
rrl 1475538 n.1881T>A non_coding_transcript_exon_variant 0.41
rrl 1475539 n.1882A>T non_coding_transcript_exon_variant 0.41
rrl 1475545 n.1888T>G non_coding_transcript_exon_variant 0.39
rrl 1475550 n.1893A>G non_coding_transcript_exon_variant 0.41
rrl 1475599 n.1942A>G non_coding_transcript_exon_variant 0.51
rrl 1475602 n.1945G>C non_coding_transcript_exon_variant 0.52
rrl 1475604 n.1950_1951delAT non_coding_transcript_exon_variant 0.5
rrl 1475608 n.1951T>G non_coding_transcript_exon_variant 0.49
rrl 1475621 n.1964T>C non_coding_transcript_exon_variant 0.47
rrl 1475642 n.1985T>C non_coding_transcript_exon_variant 0.44
rrl 1475649 n.1992A>G non_coding_transcript_exon_variant 0.5
rrl 1475655 n.1998T>G non_coding_transcript_exon_variant 0.5
rrl 1475659 n.2002G>A non_coding_transcript_exon_variant 0.53
rrl 1475752 n.2095C>G non_coding_transcript_exon_variant 0.54
rrl 1475753 n.2096C>G non_coding_transcript_exon_variant 0.57
rrl 1475775 n.2118G>T non_coding_transcript_exon_variant 0.58
rrl 1475776 n.2119G>C non_coding_transcript_exon_variant 0.47
rrl 1475883 n.2226A>C non_coding_transcript_exon_variant 0.63
rrl 1475884 n.2227A>G non_coding_transcript_exon_variant 0.61
rrl 1475892 n.2235A>G non_coding_transcript_exon_variant 0.15
rrl 1475896 n.2239A>G non_coding_transcript_exon_variant 0.41
rrl 1475897 n.2240T>C non_coding_transcript_exon_variant 0.63
rrl 1475898 n.2241A>G non_coding_transcript_exon_variant 0.57
rrl 1475899 n.2242G>A non_coding_transcript_exon_variant 0.58
rrl 1475916 n.2259C>T non_coding_transcript_exon_variant 0.27
rrl 1475943 n.2286G>A non_coding_transcript_exon_variant 0.5
rrl 1475952 n.2295A>G non_coding_transcript_exon_variant 0.48
rrl 1475970 n.2313C>T non_coding_transcript_exon_variant 0.35
rrl 1475975 n.2318C>T non_coding_transcript_exon_variant 0.57
rrl 1475977 n.2320A>G non_coding_transcript_exon_variant 0.53
rrl 1475988 n.2331A>G non_coding_transcript_exon_variant 0.49
rrl 1475997 n.2340A>T non_coding_transcript_exon_variant 0.25
rrl 1476001 n.2344T>C non_coding_transcript_exon_variant 0.24
rrl 1476030 n.2373A>G non_coding_transcript_exon_variant 0.2
rrl 1476032 n.2375C>T non_coding_transcript_exon_variant 0.18
rrl 1476033 n.2376T>C non_coding_transcript_exon_variant 0.17
rrl 1476034 n.2377C>A non_coding_transcript_exon_variant 0.18
rrl 1476035 n.2378G>T non_coding_transcript_exon_variant 0.18
rrl 1476044 n.2387T>A non_coding_transcript_exon_variant 0.18
rrl 1476045 n.2388G>T non_coding_transcript_exon_variant 0.2
rrl 1476049 n.2392C>T non_coding_transcript_exon_variant 0.2
rrl 1476086 n.2429G>A non_coding_transcript_exon_variant 0.2
rrl 1476088 n.2431A>C non_coding_transcript_exon_variant 0.2
rrl 1476099 n.2442A>G non_coding_transcript_exon_variant 0.16
rrl 1476103 n.2446C>A non_coding_transcript_exon_variant 0.13
rrl 1476105 n.2450delA non_coding_transcript_exon_variant 0.2
rrl 1476110 n.2453G>T non_coding_transcript_exon_variant 0.15
rrl 1476115 n.2458T>C non_coding_transcript_exon_variant 0.24
rrl 1476131 n.2474C>T non_coding_transcript_exon_variant 0.4
rrl 1476160 n.2503T>C non_coding_transcript_exon_variant 0.24
rrl 1476179 n.2522C>T non_coding_transcript_exon_variant 0.28
rrl 1476194 n.2537A>G non_coding_transcript_exon_variant 0.6
rrl 1476200 n.2543A>T non_coding_transcript_exon_variant 0.62
rrl 1476201 n.2544C>T non_coding_transcript_exon_variant 0.63
rrl 1476214 n.2557G>T non_coding_transcript_exon_variant 0.63
rrl 1476221 n.2564T>C non_coding_transcript_exon_variant 0.51
rrl 1476224 n.2567A>G non_coding_transcript_exon_variant 0.64
rrl 1476245 n.2588C>T non_coding_transcript_exon_variant 0.59
rrl 1476252 n.2595T>G non_coding_transcript_exon_variant 0.67
rrl 1476256 n.2599A>G non_coding_transcript_exon_variant 0.65
rrl 1476260 n.2603A>G non_coding_transcript_exon_variant 0.72
rrl 1476279 n.2622G>A non_coding_transcript_exon_variant 0.4
rrl 1476281 n.2624T>C non_coding_transcript_exon_variant 0.65
rrl 1476294 n.2637A>G non_coding_transcript_exon_variant 0.38
rrl 1476295 n.2638C>G non_coding_transcript_exon_variant 0.36
rrl 1476296 n.2639C>T non_coding_transcript_exon_variant 0.37
rrl 1476297 n.2640C>G non_coding_transcript_exon_variant 0.57
rrl 1476298 n.2641C>G non_coding_transcript_exon_variant 0.55
rrl 1476300 n.2643G>T non_coding_transcript_exon_variant 0.43
rrl 1476301 n.2644A>T non_coding_transcript_exon_variant 0.57
rrl 1476309 n.2652G>C non_coding_transcript_exon_variant 0.58
rrl 1476311 n.2654G>C non_coding_transcript_exon_variant 0.36
rrl 1476312 n.2655T>C non_coding_transcript_exon_variant 0.35
rrl 1476359 n.2702C>G non_coding_transcript_exon_variant 0.38
rrl 1476381 n.2724G>C non_coding_transcript_exon_variant 0.36
rrl 1476428 n.2771C>T non_coding_transcript_exon_variant 0.69
rrl 1476466 n.2809C>T non_coding_transcript_exon_variant 0.56
rrl 1476506 n.2849T>C non_coding_transcript_exon_variant 0.55
rrl 1476515 n.2858C>T non_coding_transcript_exon_variant 0.51
rrl 1476523 n.2866T>C non_coding_transcript_exon_variant 0.36
rrl 1476524 n.2867C>A non_coding_transcript_exon_variant 0.59
rrl 1476525 n.2868A>G non_coding_transcript_exon_variant 0.49
rrl 1476530 n.2873C>T non_coding_transcript_exon_variant 0.14
rrl 1476536 n.2879G>A non_coding_transcript_exon_variant 0.41
rrl 1476538 n.2881A>G non_coding_transcript_exon_variant 0.49
rrl 1476539 n.2882A>G non_coding_transcript_exon_variant 0.59
rrl 1476540 n.2883C>G non_coding_transcript_exon_variant 0.53
rrl 1476584 n.2927C>T non_coding_transcript_exon_variant 0.42
rrl 1476585 n.2928A>G non_coding_transcript_exon_variant 0.42
rrl 1476594 n.2937C>T non_coding_transcript_exon_variant 0.3
rrl 1476603 n.2946G>A non_coding_transcript_exon_variant 0.24
rrl 1476607 n.2950C>T non_coding_transcript_exon_variant 0.14
rrl 1476608 n.2951C>G non_coding_transcript_exon_variant 0.14
rrl 1476614 n.2957A>T non_coding_transcript_exon_variant 0.3
rrl 1476616 n.2959A>G non_coding_transcript_exon_variant 0.26
rrl 1476619 n.2962C>T non_coding_transcript_exon_variant 0.29
rrl 1476628 n.2971T>A non_coding_transcript_exon_variant 0.22
rrl 1476629 n.2972C>A non_coding_transcript_exon_variant 0.26
rrl 1476630 n.2973A>G non_coding_transcript_exon_variant 0.24
rrl 1476728 n.3071T>C non_coding_transcript_exon_variant 0.96
rpsA 1833742 c.201A>G synonymous_variant 0.16
rpsA 1833745 c.204G>C synonymous_variant 0.18
rpsA 1833760 c.219C>T synonymous_variant 0.15
rpsA 1833781 c.240T>G synonymous_variant 0.15
rpsA 1833784 c.243C>G synonymous_variant 0.19
rpsA 1833787 c.246C>G synonymous_variant 0.14
rpsA 1833790 c.249T>C synonymous_variant 0.2
rpsA 1833793 c.252C>T synonymous_variant 0.14
rpsA 1833802 c.261A>G synonymous_variant 0.14
rpsA 1833805 c.264C>A synonymous_variant 0.13
rpsA 1833808 c.267G>T synonymous_variant 0.14
rpsA 1833811 c.270G>T synonymous_variant 0.15
rpsA 1833829 c.288A>G synonymous_variant 0.15
rpsA 1833832 c.291G>A synonymous_variant 0.17
rpsA 1833838 c.297G>T synonymous_variant 0.14
rpsA 1833841 c.300C>G synonymous_variant 0.13
rpsA 1833847 c.306C>G synonymous_variant 0.17
rpsA 1833856 c.315A>G synonymous_variant 0.19
rpsA 1833874 c.333T>C synonymous_variant 0.2
rpsA 1833886 c.345C>G synonymous_variant 0.2
rpsA 1833894 p.Ala118Glu missense_variant 0.16
rpsA 1833928 c.387G>C synonymous_variant 0.22
rpsA 1833952 c.411C>T synonymous_variant 0.13
rpsA 1833955 c.414G>C synonymous_variant 0.22
rpsA 1833970 c.429G>C synonymous_variant 0.29
rpsA 1833976 c.435C>T synonymous_variant 0.22
rpsA 1833979 c.438T>C synonymous_variant 0.33
rpsA 1833985 c.444G>C synonymous_variant 0.23
rpsA 1833988 c.447C>G synonymous_variant 0.12
rpsA 1833994 c.453G>C synonymous_variant 0.24
rpsA 1833997 c.456G>C synonymous_variant 0.21
rpsA 1834000 c.459G>C synonymous_variant 0.16
rpsA 1834009 c.468C>T synonymous_variant 0.27
rpsA 1834012 c.471G>C synonymous_variant 0.29
rpsA 1834015 c.474G>C synonymous_variant 0.27
rpsA 1834024 c.483G>C synonymous_variant 0.29
rpsA 1834030 c.489C>G synonymous_variant 0.2
rpsA 1834034 p.Ile165Val missense_variant 0.28
rpsA 1834069 c.528G>C synonymous_variant 0.21
rpsA 1834093 c.552G>C synonymous_variant 0.12
rpsA 1834348 c.807T>C synonymous_variant 0.15
rpsA 1834357 c.816T>C synonymous_variant 0.15
rpsA 1834361 c.820T>C synonymous_variant 0.15
rpsA 1834366 c.825A>G synonymous_variant 0.19
rpsA 1834378 c.837T>G synonymous_variant 0.2
rpsA 1834384 c.843A>G synonymous_variant 0.21
rpsA 1834395 p.Arg285Gln missense_variant 0.21
rpsA 1834408 c.867C>G synonymous_variant 0.24
rpsA 1834411 c.870T>C synonymous_variant 0.23
rpsA 1834417 c.876G>C synonymous_variant 0.13
rpsA 1834423 c.882G>C synonymous_variant 0.12
rpsA 1834427 p.Ile296Val missense_variant 0.21
rpsA 1834451 c.910_912delTTGinsCTC synonymous_variant 0.22
rpsA 1834456 c.915T>C synonymous_variant 0.19
rpsA 1834468 c.927A>G synonymous_variant 0.15
rpsA 1834489 c.948T>C synonymous_variant 0.14
rpsA 1834501 c.960G>C synonymous_variant 0.14
rpsA 1834528 c.987T>C synonymous_variant 0.18
rpsA 1834543 c.1002C>G synonymous_variant 0.15
rpsA 1834552 c.1011G>C synonymous_variant 0.15
rpsA 1834555 c.1014T>C synonymous_variant 0.15
rpsA 1834558 c.1017C>G synonymous_variant 0.14
rpsA 1834600 c.1059G>C synonymous_variant 0.16
rpsA 1834619 c.1078T>C synonymous_variant 0.15
rpsA 1834633 c.1092A>G synonymous_variant 0.14
rpsA 1834639 c.1098T>C synonymous_variant 0.14
rpsA 1834859 p.Ala440Thr missense_variant 0.98
tlyA 1917972 c.33A>G synonymous_variant 1.0
ndh 2102106 p.Gly313Arg missense_variant 0.14
ndh 2103173 c.-132delG upstream_gene_variant 1.0
katG 2154724 p.Arg463Leu missense_variant 1.0
katG 2155503 c.609C>T synonymous_variant 1.0
katG 2156025 c.87C>A synonymous_variant 1.0
katG 2156465 c.-354C>T upstream_gene_variant 1.0
PPE35 2167926 p.Leu896Ser missense_variant 1.0
PPE35 2168011 p.Ser868Arg missense_variant 1.0
PPE35 2168814 c.1798dupA frameshift_variant 1.0
Rv1979c 2222308 p.Asp286Gly missense_variant 1.0
Rv1979c 2223293 c.-129A>G upstream_gene_variant 1.0
kasA 2518132 c.18C>T synonymous_variant 1.0
ald 3086728 c.-92C>T upstream_gene_variant 1.0
ald 3086788 c.-32T>C upstream_gene_variant 1.0
ald 3087084 c.266delA frameshift_variant 1.0
Rv3083 3448783 p.Val94Ile missense_variant 1.0
fprA 3473996 c.-11_-10insA upstream_gene_variant 1.0
fprA 3474427 p.Val141Ile missense_variant 1.0
fprA 3475159 p.Asn385Asp missense_variant 1.0
rpoA 3878630 c.-124delC upstream_gene_variant 1.0
clpC1 4038403 c.2302T>C synonymous_variant 1.0
clpC1 4038767 c.1938G>C synonymous_variant 0.14
clpC1 4038770 c.1935C>T synonymous_variant 0.15
clpC1 4038773 c.1932T>C synonymous_variant 0.18
clpC1 4038795 p.Ser637Thr missense_variant 0.15
clpC1 4038812 c.1893T>C synonymous_variant 0.17
clpC1 4038815 c.1890G>C synonymous_variant 0.13
clpC1 4038845 c.1860G>C synonymous_variant 0.14
clpC1 4039724 c.981A>G synonymous_variant 0.16
clpC1 4039757 c.948A>G synonymous_variant 0.16
clpC1 4039766 c.939T>C synonymous_variant 0.12
clpC1 4039778 c.927A>G synonymous_variant 0.15
clpC1 4039781 c.924G>C synonymous_variant 0.17
clpC1 4039817 c.888A>T synonymous_variant 0.17
clpC1 4039820 c.885T>G synonymous_variant 0.15
clpC1 4039831 c.874T>C synonymous_variant 0.17
clpC1 4039850 c.855T>C synonymous_variant 0.23
clpC1 4039853 c.852G>C synonymous_variant 0.16
clpC1 4039865 c.840T>C synonymous_variant 0.23
clpC1 4039871 c.834C>G synonymous_variant 0.14
clpC1 4039875 p.Asn277Arg missense_variant 0.13
clpC1 4039904 c.801A>G synonymous_variant 0.2
clpC1 4039934 c.770dupC frameshift_variant 0.19
clpC1 4039937 c.768G>C synonymous_variant 0.24
clpC1 4039940 c.765G>C synonymous_variant 0.24
clpC1 4039945 p.Ser254Ala missense_variant 0.17
clpC1 4039946 c.759A>C synonymous_variant 0.2
clpC1 4039949 c.756G>C synonymous_variant 0.19
clpC1 4039952 c.753T>C synonymous_variant 0.24
clpC1 4039955 c.750G>C synonymous_variant 0.28
clpC1 4039979 c.726C>G synonymous_variant 0.19
clpC1 4039991 c.714G>C synonymous_variant 0.23
clpC1 4040003 c.702G>C synonymous_variant 0.14
embC 4240671 p.Thr270Ile missense_variant 1.0
embC 4241384 p.Pro508Thr missense_variant 0.97
embA 4242643 c.-590C>T upstream_gene_variant 1.0
embA 4242970 c.-263C>T upstream_gene_variant 1.0
embA 4244220 c.988C>T synonymous_variant 1.0
embB 4246551 p.Asn13Ser missense_variant 1.0
embB 4246864 c.351C>T synonymous_variant 1.0
embB 4247646 p.Glu378Ala missense_variant 1.0
embB 4249640 c.3127T>C synonymous_variant 0.94
aftB 4267858 p.Ile327Val missense_variant 1.0
aftB 4269351 c.-515C>T upstream_gene_variant 1.0
ubiA 4269387 p.Glu149Asp missense_variant 1.0
aftB 4269606 c.-770T>C upstream_gene_variant 1.0
whiB6 4338595 c.-75delG upstream_gene_variant 1.0
gid 4407588 c.615A>G synonymous_variant 1.0