lineage | Count |
---|---|
lineage4.9 | 42 |
La1.7.X-unk4 | 1 |
La1.3 | 1 |
La1.8.1 | 1 |
lineage4 | 8 |
lineage2.2.1 | 17 |
lineage2.2.2 | 3 |
lineage4.5;lineage2.2.1 | 1 |
lineage5.1.1 | 2 |
lineage4.6.5 | 2 |
lineage3 | 18 |
lineage4.3.4.2.1 | 6 |
lineage4.4.1.1;lineage4.1.2.1 | 1 |
lineage4.1.2.1 | 6 |
lineage4.4.1 | 2 |
lineage4.6.1.2 | 3 |
La1.6 | 2 |
8 | |
lineage4.2.1 | 1 |
La2 | 1 |
lineage4.2.2.1 | 1 |
lineage4.8 | 12 |
lineage1.2.2 | 1 |
lineage4.4.2 | 1 |
lineage4.1 | 1 |
lineage3.1.1 | 2 |
lineage3.1 | 1 |
lineage1.1.3 | 1 |
lineage4.1.2 | 1 |
lineage4.3.3 | 1 |
lineage4.7 | 1 |
lineage4.4.1.1 | 2 |
lineage4.2.1.1 | 1 |
lineage4.3.4.2 | 1 |
lineage4.5 | 1 |
lineage4.6.2.2 | 2 |
lineage1 | 1 |
lineage4;lineage3 | 1 |
lineage4.1.1.3.1 | 3 |
lineage4.8.2 | 1 |
lineage4.3.4.1 | 1 |
lineage1.2.1.2.1 | 1 |
lineage1.1.1.1 | 1 |
lineage4.2.2.2 | 1 |
lineage4.3.2.1 | 2 |
spoligotype | Count |
---|---|
None | 168 |
ID | Drug resistance | Lineage | Country iso2 | ERR3283046 | MDR-TB | lineage4.9 | None | ERR108125 | Pre-XDR-TB | lineage4.9 | None | ERR3283006 | RR-TB | lineage4.9 | None | ERR4769508 | RR-TB | lineage4.9 | None | ERR3445487 | Other | La1.7.X-unk4 | None | ERR3797062 | RR-TB | lineage4.9 | None | ERR4769436 | Other | La1.3 | None | ERR3439489 | RR-TB | La1.8.1 | None | ERR3797065 | MDR-TB | lineage4 | None | ERR4796351 | MDR-TB | lineage4.9 | None | ERR4769530 | RR-TB | lineage4.9 | None | ERR4769539 | Sensitive | lineage4.9 | None | ERR5987263 | MDR-TB | lineage2.2.1 | None | ERR4808964 | RR-TB | lineage2.2.1 | None | ERR4809333 | Pre-XDR-TB | lineage2.2.2 | None | ERR4811035 | Pre-XDR-TB | lineage4.5;lineage2.2.1 | None | SRR10315558 | Sensitive | lineage2.2.1 | None | ERR751345 | Other | lineage5.1.1 | None | ERR7801175 | RR-TB | lineage4.6.5 | None | ERR8686160 | Sensitive | lineage2.2.1 | None | ERR9119733 | MDR-TB | lineage2.2.1 | None | ERR6197044 | RR-TB | lineage4.9 | None | ERR7801176 | RR-TB | lineage4.6.5 | None | SRR1049673 | Pre-XDR-TB | lineage3 | None | SRR1049559 | MDR-TB | lineage4.3.4.2.1 | None | SRR1049672 | Other | lineage3 | None | SRR10315567 | Other | lineage2.2.1 | None | SRR1062871 | MDR-TB | lineage4.3.4.2.1 | None | SRR1049726 | MDR-TB | lineage4.4.1.1;lineage4.1.2.1 | None | SRR1049725 | RR-TB | lineage4.1.2.1 | None | SRR10808749 | HR-TB | lineage4.4.1 | None | SRR1062918 | Pre-XDR-TB | lineage3 | None | SRR1062928 | RR-TB | lineage4 | None | SRR1062880 | MDR-TB | lineage4.6.1.2 | None | SRR10993951 | RR-TB | La1.6 | None | SRR10869071 | MDR-TB | lineage2.2.1 | None | SRR1140736 | RR-TB | None | SRR1140716 | Pre-XDR-TB | lineage3 | None | SRR1140712 | MDR-TB | lineage4.6.1.2 | None | SRR1140753 | MDR-TB | lineage4.3.4.2.1 | None | SRR1173310 | MDR-TB | None | SRR1173281 | RR-TB | lineage3 | None | SRR1173170 | Other | lineage4.9 | None | SRR1173385 | Sensitive | lineage4.9 | None | SRR1183080 | RR-TB | lineage4.9 | None | SRR1173515 | HR-TB | lineage4.9 | None | SRR1173740 | Other | None | SRR1180440 | Other | lineage4.9 | None | SRR1180446 | Other | lineage4.9 | None | SRR1181161 | Other | lineage4.9 | None | SRR1182985 | Pre-XDR-TB | lineage3 | None | SRR1173719 | HR-TB | lineage3 | None | SRR1173770 | Other | lineage4.9 | None | SRR1180179 | Pre-XDR-TB | lineage3 | None | SRR1184308 | Sensitive | lineage4.9 | None | SRR1196545 | HR-TB | lineage4.9 | None | SRR16156188 | HR-TB | lineage4.9 | None | SRR14782539 | MDR-TB | lineage4.2.1 | None | SRR13888750 | Other | La2 | None | SRR16149129 | MDR-TB | lineage4.2.2.1 | None | SRR1735596 | RR-TB | lineage4.9 | None | SRR16156804 | RR-TB | lineage4.9 | None | SRR16156832 | RR-TB | None | SRR16157123 | Other | lineage4.9 | None | SRR16156697 | MDR-TB | lineage2.2.1 | None | SRR18002981 | Other | lineage2.2.1 | None | SRR18002881 | Pre-XDR-TB | lineage2.2.1 | None | SRR18003047 | MDR-TB | lineage2.2.1 | None | SRR19303820 | RR-TB | lineage4.8 | None | ERR4815225 | RR-TB | lineage1.2.2 | None | SRR22175249 | Pre-XDR-TB | lineage2.2.1 | None | SAMEA3501065 | RR-TB | lineage4.8 | None | ERR4815301 | Other | lineage4.4.2 | None | ERR4815079 | RR-TB | lineage3 | None | ERR4814763 | Other | lineage2.2.1 | None | ERR4813263 | MDR-TB | lineage4.8 | None | SAMEA3501073 | RR-TB | lineage4.8 | None | ERR4815572 | Other | lineage4.1.2.1 | None | ERR4815777 | Other | lineage4.9 | None | ERR4814841 | Other | lineage4.1 | None | ERR176580 | Sensitive | lineage4.3.4.2.1 | None | ERR4815886 | Sensitive | lineage4.9 | None | ERR4815909 | Other | lineage4.8 | None | ERR4817464 | Other | lineage3.1.1 | None | ERR4815910 | Other | lineage4.1.2.1 | None | SRR3675552 | RR-TB | lineage4.9 | None | ERR2229024 | Sensitive | lineage4 | None | SRR3675527 | RR-TB | lineage4.9 | None | ERR2027290 | RR-TB | lineage3.1 | None | ERR4816093 | Other | lineage1.1.3 | None | ERR2229198 | MDR-TB | lineage4.8 | None | ERR2229363 | Sensitive | lineage4.8 | None | ERR4816531 | Other | lineage4.1.2 | None | ERR2229233 | Sensitive | lineage4 | None | ERR4816610 | RR-TB | lineage4.3.3 | None | ERR4816734 | Sensitive | lineage4.9 | None | ERR4817189 | Other | lineage4.7 | None | ERR2228838 | RR-TB | lineage4.8 | None | ERR4817526 | Other | lineage4.4.1.1 | gb | ERR4816756 | RR-TB | None | ERR4815811 | HR-TB | lineage4.2.1.1 | None | SAMN02380990 | MDR-TB | lineage4.6.1.2 | None | SAMN02380982 | MDR-TB | lineage4.3.4.2 | None | SRR4033549 | HR-TB | lineage2.2.2 | None | ERR4817826 | RR-TB | lineage4.5 | None | ERR4818039 | Sensitive | lineage4.9 | None | ERR2510790 | Other | lineage4.6.2.2 | None | ERR4818785 | RR-TB | lineage4.1.2.1 | None | ERR4818126 | RR-TB | lineage1 | None | ERR4818149 | Other | lineage4.9 | None | ERR4818851 | RR-TB | lineage4.4.1.1 | None | ERR4818522 | Pre-XDR-TB | lineage3 | None | ERR2512606 | MDR-TB | lineage3 | None | ERR4818393 | RR-TB | lineage3 | None | SRR5007163 | MDR-TB | lineage4;lineage3 | None | SRR5007161 | RR-TB | lineage4.1.1.3.1 | None | SRR5007168 | RR-TB | lineage4.9 | None | SRR5007165 | MDR-TB | lineage3 | None | SRR5007167 | RR-TB | lineage4.1.1.3.1 | None | ERR4819307 | RR-TB | lineage4 | None | SRR5007169 | RR-TB | lineage4.8.2 | None | ERR4817584 | MDR-TB | lineage3 | None | ERR4818646 | Sensitive | lineage4.1.2.1 | None | ERR4819265 | HR-TB | lineage4.3.4.1 | None | SRR5007193 | RR-TB | lineage4.1.1.3.1 | None | SAMEA3501067 | RR-TB | lineage4.8 | None | ERR4819224 | Other | lineage1.2.1.2.1 | None | ERR4819383 | RR-TB | lineage4.9 | None | ERR4820324 | Other | lineage4 | None | ERR4819456 | Other | lineage4.8 | None | ERR4819863 | RR-TB | lineage4.9 | None | ERR4820410 | Pre-XDR-TB | lineage3.1.1 | None | ERR4819640 | RR-TB | lineage4.6.2.2 | None | ERR4820833 | HR-TB | None | ERR4820130 | Other | lineage3 | None | ERR4820030 | Other | lineage4.9 | None | ERR4820107 | RR-TB | None | SAMEA3501052 | RR-TB | lineage4.8 | None | ERR4821811 | RR-TB | lineage4.9 | None | ERR4821214 | RR-TB | None | ERR2517627 | RR-TB | lineage4.8 | nl | ERR4821172 | RR-TB | lineage4.9 | None | ERR4821773 | Other | La1.6 | None | ERR4821272 | RR-TB | lineage4.1.2.1 | None | ERR4821550 | Other | lineage2.2.1 | None | ERR4822261 | RR-TB | lineage2.2.1 | None | ERR4822004 | Other | lineage1.1.1.1 | gb | SRR5818586 | RR-TB | lineage4.2.2.2 | None | ERR502473 | Pre-XDR-TB | lineage4.9 | None | SRR6046020 | Other | lineage3 | None | SRR5818647 | RR-TB | lineage4.3.4.2.1 | None | SRR6045267 | RR-TB | lineage4 | None | SRR6480596 | HR-TB | lineage4.4.1 | None | ERR502470 | RR-TB | lineage4.9 | None | ERR502478 | RR-TB | lineage4.9 | None | ERR502474 | Pre-XDR-TB | lineage4.9 | None | ERR502481 | Pre-XDR-TB | lineage4.9 | None | ERR502479 | RR-TB | lineage4.9 | None | ERR502517 | MDR-TB | lineage5.1.1 | None | SRR6982246 | Sensitive | lineage4 | None | SRR9970981 | RR-TB | lineage4.3.2.1 | None | ERR017781 | Other | lineage3 | None | SRR9971112 | Other | lineage2.2.1 | None | SRR9971113 | Other | lineage2.2.1 | None | SRR9971168 | Other | lineage4.3.2.1 | None | DRR185024 | Other | lineage2.2.2 | None | ERR323044 | HR-TB | lineage4.3.4.2.1 | None | ERR019855 | Other | lineage3 | None |
---|