TB-Profiler result

Run: SRR1173281
Summary

Run ID: SRR1173281

Sample name:

Date: 03-04-2023 03:20:43

Number of reads: 937524

Percentage reads mapped: 14.85

Strain: lineage3

Drug-resistance: RR-TB

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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
lineage3 East-African-Indian CAS RD750 0.99
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
rpoB 761127 p.Ser441Ala missense_variant 0.3 rifampicin
rrs 1472644 n.799C>T non_coding_transcript_exon_variant 0.85 streptomycin
rrs 1473247 n.1402C>A non_coding_transcript_exon_variant 0.9 kanamycin, capreomycin, aminoglycosides, amikacin
rrs 1473329 n.1484G>T non_coding_transcript_exon_variant 0.86 kanamycin, capreomycin, aminoglycosides, amikacin
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
gyrA 7362 p.Glu21Gln missense_variant 1.0
gyrA 7585 p.Ser95Thr missense_variant 1.0
gyrA 9304 p.Gly668Asp missense_variant 1.0
gyrA 9741 c.2442delC frameshift_variant 0.25
fgd1 491742 c.960T>C synonymous_variant 1.0
mshA 575596 c.249C>A synonymous_variant 0.29
ccsA 619960 p.Ala24Thr missense_variant 0.22
rpoB 760184 c.378A>G synonymous_variant 0.14
rpoB 760187 c.381G>C synonymous_variant 0.15
rpoB 760199 c.393C>A synonymous_variant 0.14
rpoB 760208 p.Ile134Met missense_variant 0.14
rpoB 760212 p.Asn136Ala missense_variant 0.13
rpoB 760253 c.447T>C synonymous_variant 0.15
rpoB 760991 c.1185G>T synonymous_variant 0.2
rpoB 760997 c.1191G>C synonymous_variant 0.22
rpoB 761003 c.1197C>G synonymous_variant 0.22
rpoB 761006 c.1200C>G synonymous_variant 0.3
rpoB 761015 c.1209G>C synonymous_variant 0.36
rpoB 761021 c.1215G>C synonymous_variant 0.27
rpoB 761027 c.1221A>G synonymous_variant 0.42
rpoB 761036 c.1230G>C synonymous_variant 0.33
rpoB 761037 c.1231T>C synonymous_variant 0.42
rpoB 761051 c.1245G>C synonymous_variant 0.36
rpoB 761057 c.1251G>C synonymous_variant 0.5
rpoB 761060 c.1254C>G synonymous_variant 0.44
rpoB 761063 c.1257C>G synonymous_variant 0.24
rpoB 761064 p.Ala420Ser missense_variant 0.24
rpoB 761084 c.1278C>A synonymous_variant 0.23
rpoB 761088 c.1282_1284delAGCinsTCG synonymous_variant 0.4
rpoB 761097 c.1291_1293delAGCinsTCG synonymous_variant 0.4
rpoB 761102 c.1296A>G synonymous_variant 0.33
rpoB 761111 c.1305C>T synonymous_variant 0.25
rpoB 761126 c.1320G>C synonymous_variant 0.3
rpoB 761132 c.1326G>T synonymous_variant 0.3
rpoB 761133 c.1327T>C synonymous_variant 0.3
rpoB 761147 c.1341C>T synonymous_variant 0.3
rpoB 761150 c.1344A>C synonymous_variant 0.33
rpoB 761579 c.1773G>C synonymous_variant 0.6
rpoB 761600 c.1794T>C synonymous_variant 0.75
rpoB 761612 c.1806G>T synonymous_variant 0.75
rpoB 761615 c.1809A>G synonymous_variant 0.75
rpoB 761973 p.His723Tyr missense_variant 0.44
rpoB 761980 p.Tyr725Phe missense_variant 0.55
rpoB 761987 c.2181C>T synonymous_variant 0.7
rpoB 761999 c.2193G>C synonymous_variant 0.7
rpoB 762002 c.2196C>G synonymous_variant 0.7
rpoB 762003 p.Asn733Gln missense_variant 0.7
rpoB 762015 p.Glu737Gln missense_variant 0.56
rpoB 762020 p.Glu738Asp missense_variant 0.56
rpoB 762026 c.2220G>C synonymous_variant 0.6
rpoB 762030 p.Thr742Ser missense_variant 0.64
rpoB 762053 c.2247T>C synonymous_variant 0.6
rpoB 762057 p.Ile751Val missense_variant 0.5
rpoB 762062 c.2256T>C synonymous_variant 0.53
rpoB 762065 c.2259T>C synonymous_variant 0.47
rpoB 762080 c.2274G>C synonymous_variant 0.43
rpoB 762086 c.2280G>C synonymous_variant 0.25
rpoB 762101 c.2295C>G synonymous_variant 0.31
rpoB 762114 p.Ile770Val missense_variant 0.22
rpoB 762122 p.Asp772Glu missense_variant 0.29
rpoB 762128 c.2322G>T synonymous_variant 0.25
rpoB 762131 c.2325C>G synonymous_variant 0.25
rpoB 762140 c.2334G>C synonymous_variant 0.33
rpoB 762143 c.2337T>C synonymous_variant 0.57
rpoB 762149 c.2343G>C synonymous_variant 0.57
rpoB 762156 p.Val784Ile missense_variant 0.57
rpoB 762167 c.2361T>C synonymous_variant 0.69
rpoB 762170 c.2364C>T synonymous_variant 0.71
rpoB 762185 c.2379G>C synonymous_variant 0.8
rpoB 762189 p.Ile795Leu missense_variant 0.65
rpoB 762194 c.2388G>C synonymous_variant 0.89
rpoB 762209 c.2403C>G synonymous_variant 0.71
rpoB 762212 c.2406G>C synonymous_variant 0.72
rpoB 762233 c.2427G>C synonymous_variant 0.17
rpoB 762245 c.2439G>C synonymous_variant 0.9
rpoB 762251 c.2445G>C synonymous_variant 0.2
rpoB 762254 c.2448T>C synonymous_variant 0.89
rpoB 762257 c.2451C>G synonymous_variant 0.17
rpoB 762273 p.Ala823Ser missense_variant 0.14
rpoB 762284 c.2478G>T synonymous_variant 0.74
rpoB 762293 c.2487T>G synonymous_variant 0.71
rpoB 762297 p.Leu831Met missense_variant 0.6
rpoB 762305 c.2499G>T synonymous_variant 0.54
rpoB 762317 c.2511A>G synonymous_variant 0.33
rpoB 762318 p.Ser838Thr missense_variant 0.29
rpoB 762325 p.Lys840Thr missense_variant 0.23
rpoC 762434 c.-936T>G upstream_gene_variant 1.0
rpoB 762855 p.Val1017Ile missense_variant 0.44
rpoB 762858 p.Thr1018Ser missense_variant 0.4
rpoC 762863 c.-507T>C upstream_gene_variant 0.44
rpoC 762866 c.-504C>A upstream_gene_variant 0.4
rpoB 762878 p.Ile1024Met missense_variant 0.6
rpoB 762879 p.Met1025Leu missense_variant 0.6
rpoC 762887 c.-483G>C upstream_gene_variant 0.57
rpoB 762894 p.Leu1030Phe missense_variant 0.17
rpoC 762899 c.-471G>C upstream_gene_variant 0.65
rpoB 762911 p.Ile1035Met missense_variant 0.16
rpoC 762917 c.-453C>G upstream_gene_variant 0.63
rpoC 762923 c.-447C>G upstream_gene_variant 0.73
rpoC 762929 c.-441G>T upstream_gene_variant 0.74
rpoC 762932 c.-438G>T upstream_gene_variant 0.16
rpoB 762939 p.Met1045Leu missense_variant 0.17
rpoB 762942 p.Ile1046Val missense_variant 0.16
rpoC 762947 c.-423C>G upstream_gene_variant 0.15
rpoC 762962 c.-408C>T upstream_gene_variant 0.18
rpoC 762980 c.-390T>C upstream_gene_variant 0.52
rpoC 762983 c.-387C>T upstream_gene_variant 0.52
rpoC 762989 c.-381G>C upstream_gene_variant 0.62
rpoC 762995 c.-375G>T upstream_gene_variant 0.52
rpoB 763002 c.3197dupA frameshift_variant 0.43
rpoB 763006 c.3201delC frameshift_variant 0.4
rpoB 763014 p.Met1070Leu missense_variant 0.4
rpoB 763017 p.Gln1071Glu missense_variant 0.4
rpoC 763031 c.-339T>G upstream_gene_variant 1.0
rpoC 763034 c.-336C>G upstream_gene_variant 0.58
rpoB 763038 p.Thr1078Ala missense_variant 0.15
rpoC 763052 c.-318G>C upstream_gene_variant 0.21
rpoC 763053 c.-317T>C upstream_gene_variant 0.64
rpoC 763058 c.-312C>G upstream_gene_variant 0.65
rpoB 763066 c.3260_3261insGGA disruptive_inframe_insertion 0.21
rpoB 763072 p.Asp1089Val missense_variant 0.2
rpoC 763082 c.-288C>A upstream_gene_variant 0.22
rpoC 763085 c.-285C>T upstream_gene_variant 0.25
rpoC 763094 c.-276G>C upstream_gene_variant 0.25
rpoC 763100 c.-270G>A upstream_gene_variant 0.38
rpoC 763103 c.-267G>C upstream_gene_variant 0.71
rpoB 763122 p.Ile1106Leu missense_variant 0.24
rpoC 763127 c.-243G>C upstream_gene_variant 0.24
rpoB 763130 p.Glu1108Asp missense_variant 0.26
rpoC 763136 c.-234C>A upstream_gene_variant 0.24
rpoC 763142 c.-228C>G upstream_gene_variant 0.38
rpoC 763148 c.-222G>C upstream_gene_variant 0.38
rpoC 763157 c.-213G>T upstream_gene_variant 0.5
rpoC 763160 c.-210G>C upstream_gene_variant 0.6
rpoB 763161 p.Leu1119Ile missense_variant 0.6
rpoC 763166 c.-204A>G upstream_gene_variant 0.6
rpoC 763169 c.-201A>G upstream_gene_variant 0.21
rpoB 763170 p.Leu1122Met missense_variant 0.62
rpoC 763181 c.-189G>C upstream_gene_variant 0.35
rpoC 763193 c.-177C>T upstream_gene_variant 0.32
rpoC 763196 c.-174G>A upstream_gene_variant 0.24
rpoB 763224 p.Glu1140* stop_gained 0.22
rpoC 763414 c.45T>A synonymous_variant 0.17
rpoC 763447 c.78C>T synonymous_variant 0.23
rpoC 763456 c.87A>G synonymous_variant 0.39
rpoC 763462 c.93G>C synonymous_variant 0.31
rpoC 763465 c.96G>A synonymous_variant 0.31
rpoC 763468 c.99G>C synonymous_variant 0.5
rpoC 763483 c.114G>C synonymous_variant 0.18
rpoC 763486 c.117T>C synonymous_variant 0.66
rpoC 763492 c.123G>C synonymous_variant 0.52
rpoC 763504 c.135C>A synonymous_variant 0.8
rpoC 763507 c.138G>C synonymous_variant 0.8
rpoC 763528 c.159G>C synonymous_variant 0.81
rpoC 763531 c.162G>C synonymous_variant 0.25
rpoC 763534 c.165T>C synonymous_variant 0.25
rpoC 763537 c.168C>T synonymous_variant 0.25
rpoC 763546 c.177A>G synonymous_variant 0.81
rpoC 763550 p.Tyr61Ala missense_variant 0.3
rpoC 763570 c.201G>T synonymous_variant 0.74
rpoC 763573 c.204G>C synonymous_variant 0.53
rpoC 763585 c.216C>G synonymous_variant 0.34
rpoC 763594 c.225C>T synonymous_variant 0.45
rpoC 763600 c.231C>T synonymous_variant 0.41
rpoC 763603 c.234C>T synonymous_variant 0.37
rpoC 763615 c.246G>C synonymous_variant 0.25
rpoC 763618 c.249C>G synonymous_variant 0.2
rpoC 763621 c.252C>T synonymous_variant 0.75
rpoC 763633 c.264T>C synonymous_variant 0.64
rpoC 763642 c.273G>C synonymous_variant 0.88
rpoC 763660 c.291T>C synonymous_variant 0.81
rpoC 763666 c.297G>T synonymous_variant 0.48
rpoC 763669 c.300C>G synonymous_variant 0.27
rpoC 763675 c.306C>G synonymous_variant 0.29
rpoC 763696 c.327T>C synonymous_variant 0.29
rpoC 763699 c.330G>T synonymous_variant 0.3
rpoC 763702 c.333C>G synonymous_variant 0.26
rpoC 763703 c.334_336delTCGinsAGC synonymous_variant 0.26
rpoC 763708 c.339G>T synonymous_variant 0.34
rpoC 763709 c.340C>T synonymous_variant 0.15
rpoC 763714 c.345G>T synonymous_variant 0.33
rpoC 763717 c.348T>C synonymous_variant 0.4
rpoC 763723 c.354G>C synonymous_variant 0.41
rpoC 763729 c.360G>C synonymous_variant 0.41
rpoC 763744 c.375G>C synonymous_variant 0.38
rpoC 763751 p.Ile128Val missense_variant 0.31
rpoC 763765 c.396T>G synonymous_variant 0.25
rpoC 763772 p.Val135Met missense_variant 0.22
rpoC 763886 c.517C>A synonymous_variant 0.33
rpoC 764211 p.Ile281Thr missense_variant 0.25
rpoC 764228 p.Gln287Lys missense_variant 0.33
rpoC 764326 c.957G>C synonymous_variant 0.25
rpoC 764338 p.Glu323Asp missense_variant 0.54
rpoC 764353 c.984G>T synonymous_variant 0.5
rpoC 764365 c.996C>T synonymous_variant 0.5
rpoC 764371 c.1002G>T synonymous_variant 0.5
rpoC 764377 c.1008C>G synonymous_variant 0.54
rpoC 764387 c.1018_1020delTTGinsCTC synonymous_variant 0.64
rpoC 764404 c.1035C>T synonymous_variant 0.64
rpoC 764405 c.1036_1038delAGGinsCGC synonymous_variant 0.56
rpoC 764428 c.1059G>A synonymous_variant 0.29
rpoC 764431 c.1062G>C synonymous_variant 0.25
rpoC 764434 c.1065A>G synonymous_variant 0.2
rpoC 764435 c.1066_1068delAGGinsCGT synonymous_variant 0.2
rpoC 764441 p.Ile358Leu missense_variant 0.21
rpoC 764446 c.1077T>C synonymous_variant 0.21
rpoC 764449 c.1080G>C synonymous_variant 0.23
rpoC 764458 c.1089G>C synonymous_variant 0.19
rpoC 764461 c.1092A>G synonymous_variant 0.41
rpoC 764491 c.1122G>C synonymous_variant 0.47
rpoC 764498 p.Ser377Ala missense_variant 0.53
rpoC 764503 c.1134G>C synonymous_variant 0.53
rpoC 764507 p.Ala380Ser missense_variant 0.62
rpoC 764521 c.1152T>C synonymous_variant 0.57
rpoC 764524 c.1155C>T synonymous_variant 0.8
rpoC 764527 c.1158C>T synonymous_variant 0.89
rpoC 764533 c.1164C>T synonymous_variant 0.91
rpoC 764536 c.1167G>T synonymous_variant 0.91
rpoC 764542 c.1173C>G synonymous_variant 0.92
rpoC 764548 c.1179G>A synonymous_variant 0.92
rpoC 764554 c.1185C>T synonymous_variant 0.28
rpoC 764560 c.1191T>C synonymous_variant 0.8
rpoC 764575 c.1206T>G synonymous_variant 0.72
rpoC 764578 c.1209C>G synonymous_variant 0.35
rpoC 764581 c.1212T>C synonymous_variant 0.69
rpoC 764582 p.Leu405Met missense_variant 0.73
rpoC 764605 c.1236G>C synonymous_variant 0.44
rpoC 764611 c.1242G>T synonymous_variant 0.7
rpoC 764626 c.1257C>T synonymous_variant 0.5
rpoC 764632 c.1263T>C synonymous_variant 0.86
rpoC 764644 c.1275G>C synonymous_variant 0.59
rpoC 764650 c.1281G>T synonymous_variant 0.88
rpoC 764662 c.1293G>C synonymous_variant 0.93
rpoC 764668 c.1299C>T synonymous_variant 0.24
rpoC 764672 p.Gln435Thr missense_variant 0.7
rpoC 764677 c.1308C>G synonymous_variant 0.76
rpoC 764679 p.Lys437Ser missense_variant 0.17
rpoC 764683 c.1314G>C synonymous_variant 0.17
rpoC 764690 p.Cys441Gly missense_variant 0.16
rpoC 764701 c.1332C>G synonymous_variant 0.97
rpoC 764705 p.Leu446Lys missense_variant 0.22
rpoC 764716 c.1347G>T synonymous_variant 0.93
rpoC 764737 c.1368G>C synonymous_variant 0.44
rpoC 764746 c.1377G>C synonymous_variant 0.88
rpoC 764752 c.1383G>C synonymous_variant 0.85
rpoC 764755 c.1386C>T synonymous_variant 0.53
rpoC 764758 c.1389C>T synonymous_variant 0.19
rpoC 764759 p.Asn464Glu missense_variant 0.19
rpoC 764764 c.1395T>C synonymous_variant 0.81
rpoC 764780 c.1411_1413delAGCinsTCG synonymous_variant 0.79
rpoC 764797 c.1428G>C synonymous_variant 0.77
rpoC 764803 c.1434C>T synonymous_variant 0.7
rpoC 764808 p.Arg480His missense_variant 0.78
rpoC 764812 c.1443C>G synonymous_variant 0.62
rpoC 764815 c.1446A>G synonymous_variant 0.4
rpoC 764824 c.1455T>C synonymous_variant 0.4
rpoC 764843 p.Ala492Thr missense_variant 0.29
rpoC 764848 c.1479G>A synonymous_variant 0.29
rpoC 764858 c.1489_1491delTTGinsCTC synonymous_variant 0.29
rpoC 764863 c.1494G>C synonymous_variant 0.29
rpoC 764875 c.1506C>G synonymous_variant 0.29
rpoC 764948 c.1579_1581delTTGinsCTC synonymous_variant 0.33
rpoC 764956 c.1587T>C synonymous_variant 0.27
rpoC 764957 p.Glu530Ser missense_variant 0.18
rpoC 764968 c.1599T>C synonymous_variant 0.25
rpoC 764998 c.1629G>C synonymous_variant 0.3
rpoC 765007 c.1638T>G synonymous_variant 0.18
rpoC 765008 c.1639T>C synonymous_variant 0.18
rpoC 765014 p.Ala549Pro missense_variant 0.18
rpoC 765019 c.1650A>G synonymous_variant 0.18
rpoC 765923 p.Asn852Ala missense_variant 0.33
rpoC 765926 p.Thr853Ser missense_variant 0.4
rpoC 765937 c.2568T>C synonymous_variant 0.4
rpoC 765940 c.2571A>C synonymous_variant 0.44
rpoC 765947 c.2578_2580delTTGinsCTC synonymous_variant 0.5
rpoC 765958 c.2589C>G synonymous_variant 0.67
rpoC 765962 c.2593T>C synonymous_variant 0.67
rpoC 765967 c.2598C>T synonymous_variant 0.57
rpoC 765973 c.2604C>T synonymous_variant 0.57
rpoC 765994 c.2625A>T synonymous_variant 0.38
rpoC 765997 c.2628T>C synonymous_variant 0.38
rpoC 766000 c.2631G>C synonymous_variant 0.33
rpoC 766003 c.2634G>C synonymous_variant 0.33
rpoC 766012 c.2643C>G synonymous_variant 0.3
mmpL5 775639 p.Ile948Val missense_variant 1.0
mmpL5 776100 p.Thr794Ile missense_variant 1.0
mmpL5 778528 c.-48G>T upstream_gene_variant 0.25
rpsL 781395 c.-165T>C upstream_gene_variant 1.0
rpsL 781501 c.-59C>A upstream_gene_variant 0.2
rpsL 781658 c.99A>G synonymous_variant 0.29
rpsL 781670 c.111G>C synonymous_variant 0.18
rpsL 781679 c.120C>G synonymous_variant 0.2
rpsL 781682 c.123T>C synonymous_variant 0.22
rpsL 781691 c.132G>A synonymous_variant 0.2
rpsL 781703 c.144G>T synonymous_variant 0.18
rpsL 781796 p.Met79Ile missense_variant 0.57
rpsL 781802 c.243G>C synonymous_variant 0.62
rpsL 781811 c.252C>T synonymous_variant 0.77
rpsL 781817 c.258G>T synonymous_variant 0.81
rpsL 781829 c.270G>T synonymous_variant 0.77
rpsL 781832 c.273T>C synonymous_variant 0.73
rpsL 781859 c.300T>C synonymous_variant 0.65
rpsL 781865 c.306G>C synonymous_variant 0.63
rpsL 781868 c.309T>C synonymous_variant 0.63
rpsL 781871 c.312G>C synonymous_variant 0.61
rpsL 781880 c.321C>T synonymous_variant 0.56
rpsL 781884 p.Asn109Gly missense_variant 0.52
rpsL 781892 p.Lys111Asn missense_variant 0.5
rpsL 781898 c.339A>T synonymous_variant 0.5
rpsL 781901 c.342C>T synonymous_variant 0.5
rpsL 781907 c.348T>C synonymous_variant 0.43
rpsL 781916 c.357T>C synonymous_variant 0.33
rplC 800612 c.-197A>G upstream_gene_variant 0.5
rplC 800618 c.-191T>G upstream_gene_variant 0.5
rplC 800630 c.-179G>T upstream_gene_variant 0.5
rplC 800632 c.-177_-176delATinsTC upstream_gene_variant 0.5
rplC 800645 c.-164C>G upstream_gene_variant 0.5
rplC 800648 c.-161A>G upstream_gene_variant 0.47
rplC 800654 c.-155T>C upstream_gene_variant 0.47
rplC 800667 c.-142_-140delTCGinsAGC upstream_gene_variant 0.5
rplC 800672 c.-137G>C upstream_gene_variant 0.5
rplC 800693 c.-116A>G upstream_gene_variant 0.5
rplC 800702 c.-107G>C upstream_gene_variant 0.17
rplC 800703 c.-106_-104delTTGinsCTC upstream_gene_variant 0.17
rplC 800715 c.-94_-92delATCinsGTT upstream_gene_variant 0.17
rplC 800720 c.-89T>C upstream_gene_variant 0.15
rplC 800723 c.-86C>G upstream_gene_variant 0.17
fbiC 1302869 c.-62G>T upstream_gene_variant 0.25
fbiC 1302961 p.Ala11Thr missense_variant 0.29
fbiC 1303510 p.Gly194Ser missense_variant 0.4
fbiC 1305142 p.Glu738Lys missense_variant 0.25
fbiC 1305380 p.Ser817* stop_gained 0.43
embR 1417153 c.195C>A synonymous_variant 0.5
rrs 1471659 n.-187C>T upstream_gene_variant 1.0
rrs 1472075 n.230A>G non_coding_transcript_exon_variant 0.33
rrs 1472078 n.233C>T non_coding_transcript_exon_variant 0.5
rrs 1472092 n.247C>T non_coding_transcript_exon_variant 0.41
rrs 1472102 n.257G>A non_coding_transcript_exon_variant 0.34
rrs 1472106 n.261G>A non_coding_transcript_exon_variant 0.82
rrs 1472108 n.263C>T non_coding_transcript_exon_variant 0.84
rrs 1472112 n.267C>T non_coding_transcript_exon_variant 0.29
rrs 1472113 n.268T>C non_coding_transcript_exon_variant 0.28
rrs 1472120 n.275G>A non_coding_transcript_exon_variant 0.36
rrs 1472148 n.303T>C non_coding_transcript_exon_variant 0.94
rrs 1472150 n.305T>A non_coding_transcript_exon_variant 0.94
rrs 1472172 n.327T>C non_coding_transcript_exon_variant 0.96
rrs 1472223 n.378C>G non_coding_transcript_exon_variant 0.36
rrs 1472225 n.380C>A non_coding_transcript_exon_variant 0.87
rrs 1472228 n.383G>C non_coding_transcript_exon_variant 0.37
rrs 1472245 n.400C>A non_coding_transcript_exon_variant 0.36
rrs 1472251 n.406G>A non_coding_transcript_exon_variant 0.95
rrs 1472251 n.406G>C non_coding_transcript_exon_variant 0.93
rrs 1472289 n.444T>G non_coding_transcript_exon_variant 0.82
rrs 1472290 n.445C>G non_coding_transcript_exon_variant 0.82
rrs 1472297 n.453_461delGTCCGGGTT non_coding_transcript_exon_variant 0.8
rrs 1472309 n.464C>T non_coding_transcript_exon_variant 0.79
rrs 1472311 n.466C>T non_coding_transcript_exon_variant 0.79
rrs 1472312 n.468_470delGAT non_coding_transcript_exon_variant 0.79
rrs 1472324 n.479G>C non_coding_transcript_exon_variant 0.78
rrs 1472325 n.480G>C non_coding_transcript_exon_variant 0.79
rrs 1472337 n.492C>T non_coding_transcript_exon_variant 0.24
rrs 1472344 n.499C>T non_coding_transcript_exon_variant 0.86
rrs 1472380 n.535G>A non_coding_transcript_exon_variant 0.34
rrs 1472400 n.555C>T non_coding_transcript_exon_variant 0.7
rrs 1472416 n.571C>T non_coding_transcript_exon_variant 0.36
rrs 1472422 n.577T>C non_coding_transcript_exon_variant 0.29
rrs 1472427 n.582T>G non_coding_transcript_exon_variant 0.16
rrs 1472476 n.631A>G non_coding_transcript_exon_variant 0.18
rrs 1472484 n.639A>T non_coding_transcript_exon_variant 0.2
rrs 1472494 n.649A>G non_coding_transcript_exon_variant 0.54
rrs 1472495 n.650C>T non_coding_transcript_exon_variant 0.29
rrs 1472496 n.651T>G non_coding_transcript_exon_variant 0.39
rrs 1472498 n.653C>T non_coding_transcript_exon_variant 0.6
rrs 1472506 n.661A>T non_coding_transcript_exon_variant 0.4
rrs 1472530 n.685G>A non_coding_transcript_exon_variant 0.87
rrs 1472558 n.713G>A non_coding_transcript_exon_variant 0.48
rrs 1472569 n.724G>A non_coding_transcript_exon_variant 0.48
rrs 1472572 n.727T>A non_coding_transcript_exon_variant 0.44
rrs 1472581 n.736A>C non_coding_transcript_exon_variant 0.88
rrs 1472581 n.736A>T non_coding_transcript_exon_variant 0.88
rrs 1472582 n.737G>A non_coding_transcript_exon_variant 0.46
rrs 1472584 n.739A>T non_coding_transcript_exon_variant 0.47
rrs 1472591 n.746G>A non_coding_transcript_exon_variant 0.46
rrs 1472597 n.752G>A non_coding_transcript_exon_variant 0.47
rrs 1472607 n.762G>A non_coding_transcript_exon_variant 0.91
rrs 1472655 n.810G>T non_coding_transcript_exon_variant 0.86
rrs 1472660 n.815T>C non_coding_transcript_exon_variant 0.83
rrs 1472661 n.816A>G non_coding_transcript_exon_variant 0.5
rrs 1472685 n.840G>A non_coding_transcript_exon_variant 0.64
rrs 1472687 n.842A>T non_coding_transcript_exon_variant 0.68
rrs 1472697 n.852T>C non_coding_transcript_exon_variant 0.62
rrs 1472713 n.868T>C non_coding_transcript_exon_variant 0.55
rrs 1472714 n.869A>G non_coding_transcript_exon_variant 0.88
rrs 1472734 n.889C>T non_coding_transcript_exon_variant 0.33
rrs 1472790 n.945T>C non_coding_transcript_exon_variant 0.81
rrs 1472814 n.969G>A non_coding_transcript_exon_variant 0.14
rrs 1472824 n.979T>A non_coding_transcript_exon_variant 0.47
rrs 1472825 n.980G>A non_coding_transcript_exon_variant 0.41
rrs 1472828 n.983T>C non_coding_transcript_exon_variant 0.37
rrs 1472836 n.991G>A non_coding_transcript_exon_variant 0.2
rrs 1472857 n.1012A>G non_coding_transcript_exon_variant 1.0
rrs 1472875 n.1030T>G non_coding_transcript_exon_variant 0.5
rrs 1472880 n.1035G>A non_coding_transcript_exon_variant 0.62
rrs 1472895 n.1050C>T non_coding_transcript_exon_variant 0.74
rrs 1472952 n.1107T>C non_coding_transcript_exon_variant 0.91
rrs 1472955 n.1110C>T non_coding_transcript_exon_variant 0.92
rrs 1472956 n.1111T>C non_coding_transcript_exon_variant 0.92
rrs 1472957 n.1112C>T non_coding_transcript_exon_variant 0.55
rrs 1472970 n.1126delG non_coding_transcript_exon_variant 0.27
rrs 1472973 n.1128A>G non_coding_transcript_exon_variant 0.88
rrs 1472973 n.1128A>T non_coding_transcript_exon_variant 0.76
rrs 1472974 n.1129A>C non_coding_transcript_exon_variant 0.27
rrs 1472975 n.1130T>G non_coding_transcript_exon_variant 0.27
rrs 1472982 n.1137G>A non_coding_transcript_exon_variant 0.55
rrs 1472987 n.1142G>A non_coding_transcript_exon_variant 0.9
rrs 1472989 n.1144G>A non_coding_transcript_exon_variant 0.46
rrs 1472990 n.1145A>G non_coding_transcript_exon_variant 0.92
rrs 1473035 n.1190G>A non_coding_transcript_exon_variant 0.89
rrs 1473047 n.1202C>T non_coding_transcript_exon_variant 0.41
rrs 1473055 n.1210C>T non_coding_transcript_exon_variant 0.87
rrs 1473056 n.1211A>T non_coding_transcript_exon_variant 0.88
rrs 1473066 n.1221A>G non_coding_transcript_exon_variant 0.87
rrs 1473081 n.1236C>T non_coding_transcript_exon_variant 0.19
rrs 1473088 n.1243A>G non_coding_transcript_exon_variant 0.72
rrs 1473093 n.1248C>T non_coding_transcript_exon_variant 0.81
rrs 1473099 n.1254T>A non_coding_transcript_exon_variant 0.78
rrs 1473100 n.1255G>A non_coding_transcript_exon_variant 0.78
rrs 1473102 n.1257C>T non_coding_transcript_exon_variant 0.78
rrs 1473104 n.1259C>T non_coding_transcript_exon_variant 0.79
rrs 1473110 n.1265T>G non_coding_transcript_exon_variant 0.71
rrs 1473111 n.1266A>G non_coding_transcript_exon_variant 0.76
rrs 1473115 n.1270G>T non_coding_transcript_exon_variant 0.56
rrs 1473121 n.1276T>C non_coding_transcript_exon_variant 0.76
rrs 1473122 n.1278A>T non_coding_transcript_exon_variant 0.7
rrs 1473130 n.1285G>A non_coding_transcript_exon_variant 0.39
rrs 1473145 n.1300C>T non_coding_transcript_exon_variant 0.49
rrs 1473147 n.1302G>T non_coding_transcript_exon_variant 0.43
rrs 1473148 n.1303G>A non_coding_transcript_exon_variant 0.43
rrs 1473157 n.1312C>T non_coding_transcript_exon_variant 0.45
rrs 1473163 n.1318C>T non_coding_transcript_exon_variant 0.52
rrs 1473164 n.1319C>A non_coding_transcript_exon_variant 0.51
rrs 1473166 n.1321G>A non_coding_transcript_exon_variant 0.44
rrs 1473252 n.1407T>C non_coding_transcript_exon_variant 0.93
rrs 1473259 n.1414C>T non_coding_transcript_exon_variant 0.65
rrs 1473276 n.1431A>G non_coding_transcript_exon_variant 0.92
rrs 1473290 n.1445C>T non_coding_transcript_exon_variant 0.57
rrs 1473301 n.1456T>C non_coding_transcript_exon_variant 0.91
rrs 1473305 n.1460G>T non_coding_transcript_exon_variant 0.34
rrs 1473315 n.1470T>C non_coding_transcript_exon_variant 0.88
rrs 1473316 n.1471C>T non_coding_transcript_exon_variant 0.88
rrs 1473319 n.1474C>T non_coding_transcript_exon_variant 0.36
rrl 1473719 n.62G>A non_coding_transcript_exon_variant 0.15
rrl 1473721 n.64G>A non_coding_transcript_exon_variant 0.15
rrl 1473758 n.101G>T non_coding_transcript_exon_variant 0.18
rrl 1473765 n.108A>G non_coding_transcript_exon_variant 0.28
rrl 1473788 n.131A>G non_coding_transcript_exon_variant 0.57
rrl 1473789 n.132G>C non_coding_transcript_exon_variant 0.58
rrl 1473795 n.138G>A non_coding_transcript_exon_variant 0.53
rrl 1473797 n.140G>C non_coding_transcript_exon_variant 0.56
rrl 1473811 n.154C>T non_coding_transcript_exon_variant 0.51
rrl 1473815 n.158T>C non_coding_transcript_exon_variant 0.43
rrl 1473821 n.164T>C non_coding_transcript_exon_variant 0.33
rrl 1473823 n.166T>C non_coding_transcript_exon_variant 0.32
rrl 1473844 n.187C>T non_coding_transcript_exon_variant 0.5
rrl 1473870 n.213G>A non_coding_transcript_exon_variant 0.38
rrl 1473871 n.214T>C non_coding_transcript_exon_variant 0.37
rrl 1473876 n.219G>A non_coding_transcript_exon_variant 0.74
rrl 1473884 n.227C>T non_coding_transcript_exon_variant 0.36
rrl 1473887 n.230T>G non_coding_transcript_exon_variant 0.74
rrl 1473888 n.231T>A non_coding_transcript_exon_variant 0.75
rrl 1473889 n.232G>A non_coding_transcript_exon_variant 0.35
rrl 1473898 n.241C>G non_coding_transcript_exon_variant 0.58
rrl 1473898 n.241C>T non_coding_transcript_exon_variant 0.61
rrl 1473899 n.242A>G non_coding_transcript_exon_variant 0.75
rrl 1473916 n.259C>A non_coding_transcript_exon_variant 0.69
rrl 1473922 n.265A>T non_coding_transcript_exon_variant 0.59
rrl 1473923 n.266C>G non_coding_transcript_exon_variant 0.58
rrl 1473934 n.277G>A non_coding_transcript_exon_variant 0.25
rrl 1474141 n.485delC non_coding_transcript_exon_variant 0.26
rrl 1474151 n.494C>T non_coding_transcript_exon_variant 0.51
rrl 1474155 n.498G>A non_coding_transcript_exon_variant 0.55
rrl 1474164 n.507C>T non_coding_transcript_exon_variant 0.75
rrl 1474166 n.509G>C non_coding_transcript_exon_variant 0.2
rrl 1474171 n.514C>G non_coding_transcript_exon_variant 0.59
rrl 1474179 n.522C>T non_coding_transcript_exon_variant 0.21
rrl 1474181 n.524C>T non_coding_transcript_exon_variant 0.58
rrl 1474183 n.526T>C non_coding_transcript_exon_variant 0.82
rrl 1474184 n.527C>T non_coding_transcript_exon_variant 0.83
rrl 1474186 n.529A>G non_coding_transcript_exon_variant 0.19
rrl 1474201 n.544T>C non_coding_transcript_exon_variant 0.29
rrl 1474202 n.545T>C non_coding_transcript_exon_variant 0.59
rrl 1474218 n.561T>A non_coding_transcript_exon_variant 0.28
rrl 1474228 n.571T>A non_coding_transcript_exon_variant 0.29
rrl 1474249 n.592G>T non_coding_transcript_exon_variant 0.29
rrl 1474252 n.595T>A non_coding_transcript_exon_variant 0.31
rrl 1474253 n.596A>T non_coding_transcript_exon_variant 0.3
rrl 1474263 n.606G>A non_coding_transcript_exon_variant 0.56
rrl 1474269 n.612C>T non_coding_transcript_exon_variant 0.84
rrl 1474281 n.624A>G non_coding_transcript_exon_variant 0.25
rrl 1474287 n.630T>A non_coding_transcript_exon_variant 0.63
rrl 1474290 n.633T>C non_coding_transcript_exon_variant 0.49
rrl 1474316 n.659T>C non_coding_transcript_exon_variant 0.18
rrl 1474348 n.691C>T non_coding_transcript_exon_variant 0.68
rrl 1474351 n.694G>T non_coding_transcript_exon_variant 0.5
rrl 1474353 n.696A>C non_coding_transcript_exon_variant 0.5
rrl 1474354 n.697C>T non_coding_transcript_exon_variant 0.63
rrl 1474355 n.698A>C non_coding_transcript_exon_variant 0.52
rrl 1474356 n.699T>A non_coding_transcript_exon_variant 0.53
rrl 1474359 n.702C>G non_coding_transcript_exon_variant 0.69
rrl 1474362 n.705A>G non_coding_transcript_exon_variant 0.69
rrl 1474387 n.730C>T non_coding_transcript_exon_variant 0.72
rrl 1474402 n.745T>C non_coding_transcript_exon_variant 0.76
rrl 1474406 n.749T>G non_coding_transcript_exon_variant 0.7
rrl 1474413 n.756A>T non_coding_transcript_exon_variant 0.25
rrl 1474450 n.793T>G non_coding_transcript_exon_variant 0.15
rrl 1474454 n.797G>A non_coding_transcript_exon_variant 0.45
rrl 1474488 n.831G>T non_coding_transcript_exon_variant 0.89
rrl 1474497 n.840G>C non_coding_transcript_exon_variant 0.89
rrl 1474506 n.849C>G non_coding_transcript_exon_variant 0.9
rrl 1474516 n.859C>A non_coding_transcript_exon_variant 0.82
rrl 1474537 n.880G>A non_coding_transcript_exon_variant 0.94
rrl 1474558 n.901G>T non_coding_transcript_exon_variant 0.17
rrl 1474584 n.927C>T non_coding_transcript_exon_variant 0.36
rrl 1474632 n.975G>T non_coding_transcript_exon_variant 0.46
rrl 1474636 n.979A>T non_coding_transcript_exon_variant 0.95
rrl 1474637 n.980C>T non_coding_transcript_exon_variant 0.95
rrl 1474638 n.981C>G non_coding_transcript_exon_variant 0.95
rrl 1474639 n.982G>C non_coding_transcript_exon_variant 0.95
rrl 1474663 n.1006C>T non_coding_transcript_exon_variant 0.94
rrl 1474673 n.1016T>C non_coding_transcript_exon_variant 0.89
rrl 1474676 n.1019T>C non_coding_transcript_exon_variant 0.87
rrl 1474677 n.1020A>G non_coding_transcript_exon_variant 0.86
rrl 1474692 n.1035G>A non_coding_transcript_exon_variant 0.83
rrl 1474694 n.1037C>T non_coding_transcript_exon_variant 0.29
rrl 1474709 n.1053_1056delTGGT non_coding_transcript_exon_variant 0.62
rrl 1474717 n.1060_1061insGTGAG non_coding_transcript_exon_variant 0.58
rrl 1474734 n.1077G>T non_coding_transcript_exon_variant 0.74
rrl 1474749 n.1092C>T non_coding_transcript_exon_variant 0.75
rrl 1474753 n.1097delC non_coding_transcript_exon_variant 0.77
rrl 1474760 n.1103A>G non_coding_transcript_exon_variant 0.83
rrl 1474779 n.1122G>A non_coding_transcript_exon_variant 0.86
rrl 1474780 n.1123C>T non_coding_transcript_exon_variant 0.86
rrl 1474782 n.1125G>A non_coding_transcript_exon_variant 0.86
rrl 1474783 n.1126G>A non_coding_transcript_exon_variant 0.15
rrl 1474790 n.1133C>T non_coding_transcript_exon_variant 0.7
rrl 1474794 n.1137C>T non_coding_transcript_exon_variant 0.93
rrl 1474806 n.1149A>G non_coding_transcript_exon_variant 0.31
rrl 1474822 n.1165G>T non_coding_transcript_exon_variant 0.35
rrl 1474823 n.1166C>G non_coding_transcript_exon_variant 0.59
rrl 1474827 n.1170C>T non_coding_transcript_exon_variant 0.96
rrl 1474830 n.1173A>G non_coding_transcript_exon_variant 0.92
rrl 1474830 n.1173A>T non_coding_transcript_exon_variant 0.93
rrl 1474831 n.1174A>G non_coding_transcript_exon_variant 0.51
rrl 1474832 n.1175A>T non_coding_transcript_exon_variant 0.52
rrl 1474869 n.1212G>T non_coding_transcript_exon_variant 0.47
rrl 1474904 n.1247G>C non_coding_transcript_exon_variant 0.35
rrl 1474905 n.1248T>A non_coding_transcript_exon_variant 0.84
rrl 1474905 n.1248T>C non_coding_transcript_exon_variant 0.77
rrl 1474913 n.1256T>C non_coding_transcript_exon_variant 0.35
rrl 1474927 n.1271delC non_coding_transcript_exon_variant 0.36
rrl 1474932 n.1275C>T non_coding_transcript_exon_variant 0.3
rrl 1474936 n.1279C>T non_coding_transcript_exon_variant 0.3
rrl 1474938 n.1281G>A non_coding_transcript_exon_variant 0.3
rrl 1474946 n.1289C>T non_coding_transcript_exon_variant 0.23
rrl 1475013 n.1356G>C non_coding_transcript_exon_variant 0.14
rrl 1475090 n.1433A>T non_coding_transcript_exon_variant 0.2
rrl 1475104 n.1447T>A non_coding_transcript_exon_variant 0.68
rrl 1475108 n.1451C>T non_coding_transcript_exon_variant 0.22
rrl 1475109 n.1452C>T non_coding_transcript_exon_variant 0.48
rrl 1475111 n.1454G>A non_coding_transcript_exon_variant 0.21
rrl 1475114 n.1457C>T non_coding_transcript_exon_variant 0.74
rrl 1475116 n.1459G>A non_coding_transcript_exon_variant 0.75
rrl 1475119 n.1462C>T non_coding_transcript_exon_variant 0.21
rrl 1475124 n.1467A>T non_coding_transcript_exon_variant 0.74
rrl 1475129 n.1472G>A non_coding_transcript_exon_variant 0.75
rrl 1475173 n.1516A>T non_coding_transcript_exon_variant 0.21
rrl 1475175 n.1518G>C non_coding_transcript_exon_variant 0.7
rrl 1475176 n.1519G>A non_coding_transcript_exon_variant 0.52
rrl 1475187 n.1530C>T non_coding_transcript_exon_variant 0.25
rrl 1475188 n.1531C>G non_coding_transcript_exon_variant 0.33
rrl 1475488 n.1831G>C non_coding_transcript_exon_variant 0.14
rrl 1475508 n.1851A>T non_coding_transcript_exon_variant 0.5
rrl 1475517 n.1860C>T non_coding_transcript_exon_variant 0.49
rrl 1475526 n.1869C>A non_coding_transcript_exon_variant 0.85
rrl 1475531 n.1874C>T non_coding_transcript_exon_variant 0.84
rrl 1475536 n.1879C>T non_coding_transcript_exon_variant 0.35
rrl 1475538 n.1881T>A non_coding_transcript_exon_variant 0.82
rrl 1475539 n.1882A>T non_coding_transcript_exon_variant 0.83
rrl 1475544 n.1887A>T non_coding_transcript_exon_variant 0.48
rrl 1475545 n.1888T>G non_coding_transcript_exon_variant 0.83
rrl 1475548 n.1891C>T non_coding_transcript_exon_variant 0.83
rrl 1475549 n.1892T>C non_coding_transcript_exon_variant 0.83
rrl 1475550 n.1893A>G non_coding_transcript_exon_variant 0.83
rrl 1475562 n.1905C>T non_coding_transcript_exon_variant 0.47
rrl 1475599 n.1942A>G non_coding_transcript_exon_variant 0.26
rrl 1475639 n.1982C>T non_coding_transcript_exon_variant 0.15
rrl 1475649 n.1992A>G non_coding_transcript_exon_variant 0.71
rrl 1475650 n.1993A>G non_coding_transcript_exon_variant 0.19
rrl 1475655 n.1998T>G non_coding_transcript_exon_variant 0.73
rrl 1475659 n.2002G>A non_coding_transcript_exon_variant 0.79
rrl 1475672 n.2015C>T non_coding_transcript_exon_variant 0.36
rrl 1475696 n.2039T>A non_coding_transcript_exon_variant 0.9
rrl 1475697 n.2040C>A non_coding_transcript_exon_variant 0.8
rrl 1475697 n.2040C>T non_coding_transcript_exon_variant 0.81
rrl 1475699 n.2042C>T non_coding_transcript_exon_variant 0.89
rrl 1475702 n.2045G>T non_coding_transcript_exon_variant 0.42
rrl 1475703 n.2046A>T non_coding_transcript_exon_variant 0.89
rrl 1475761 n.2105_2106delGC non_coding_transcript_exon_variant 0.62
rrl 1475761 n.2106C>T non_coding_transcript_exon_variant 0.85
rrl 1475764 n.2107A>T non_coding_transcript_exon_variant 0.27
rrl 1475765 n.2108A>T non_coding_transcript_exon_variant 0.19
rrl 1475775 n.2118G>T non_coding_transcript_exon_variant 0.23
rrl 1475883 n.2226A>C non_coding_transcript_exon_variant 0.9
rrl 1475883 n.2226A>T non_coding_transcript_exon_variant 0.89
rrl 1475884 n.2227A>G non_coding_transcript_exon_variant 0.44
rrl 1475897 n.2240T>C non_coding_transcript_exon_variant 0.94
rrl 1475898 n.2241A>G non_coding_transcript_exon_variant 0.94
rrl 1475899 n.2242G>A non_coding_transcript_exon_variant 0.94
rrl 1475916 n.2259C>G non_coding_transcript_exon_variant 0.89
rrl 1475916 n.2259C>T non_coding_transcript_exon_variant 0.85
rrl 1475943 n.2286G>A non_coding_transcript_exon_variant 0.93
rrl 1475952 n.2295A>G non_coding_transcript_exon_variant 0.92
rrl 1475963 n.2306G>A non_coding_transcript_exon_variant 0.27
rrl 1475970 n.2313C>T non_coding_transcript_exon_variant 0.68
rrl 1475975 n.2318C>T non_coding_transcript_exon_variant 0.19
rrl 1475977 n.2320A>G non_coding_transcript_exon_variant 0.91
rrl 1475978 n.2321C>T non_coding_transcript_exon_variant 0.91
rrl 1475988 n.2331A>G non_coding_transcript_exon_variant 0.89
rrl 1475989 n.2332T>G non_coding_transcript_exon_variant 0.17
rrl 1475990 n.2333G>C non_coding_transcript_exon_variant 0.18
rrl 1475997 n.2340A>G non_coding_transcript_exon_variant 0.18
rrl 1475998 n.2341C>T non_coding_transcript_exon_variant 0.18
rrl 1476001 n.2344T>C non_coding_transcript_exon_variant 0.66
rrl 1476030 n.2373A>G non_coding_transcript_exon_variant 0.61
rrl 1476032 n.2375C>A non_coding_transcript_exon_variant 0.6
rrl 1476034 n.2377C>T non_coding_transcript_exon_variant 0.6
rrl 1476036 n.2379A>G non_coding_transcript_exon_variant 0.6
rrl 1476043 n.2386T>C non_coding_transcript_exon_variant 0.57
rrl 1476047 n.2390G>T non_coding_transcript_exon_variant 0.57
rrl 1476049 n.2392C>T non_coding_transcript_exon_variant 0.6
rrl 1476056 n.2399G>A non_coding_transcript_exon_variant 0.59
rrl 1476076 n.2419A>G non_coding_transcript_exon_variant 0.47
rrl 1476085 n.2428G>A non_coding_transcript_exon_variant 0.18
rrl 1476099 n.2442A>G non_coding_transcript_exon_variant 0.14
rrl 1476105 n.2450delA non_coding_transcript_exon_variant 0.33
rrl 1476115 n.2458T>C non_coding_transcript_exon_variant 0.53
rrl 1476130 n.2473G>A non_coding_transcript_exon_variant 0.74
rrl 1476131 n.2474C>T non_coding_transcript_exon_variant 0.74
rrl 1476160 n.2503T>C non_coding_transcript_exon_variant 0.4
rrl 1476164 n.2507A>G non_coding_transcript_exon_variant 0.86
rrl 1476165 n.2508T>A non_coding_transcript_exon_variant 0.8
rrl 1476165 n.2508T>G non_coding_transcript_exon_variant 0.75
rrl 1476194 n.2537A>G non_coding_transcript_exon_variant 0.91
rrl 1476200 n.2543A>T non_coding_transcript_exon_variant 0.9
rrl 1476201 n.2544C>T non_coding_transcript_exon_variant 0.9
rrl 1476213 n.2556G>T non_coding_transcript_exon_variant 0.6
rrl 1476214 n.2557G>T non_coding_transcript_exon_variant 0.91
rrl 1476215 n.2558C>T non_coding_transcript_exon_variant 0.64
rrl 1476224 n.2567A>G non_coding_transcript_exon_variant 0.9
rrl 1476245 n.2588C>T non_coding_transcript_exon_variant 0.88
rrl 1476251 n.2594T>A non_coding_transcript_exon_variant 0.78
rrl 1476252 n.2595T>G non_coding_transcript_exon_variant 0.77
rrl 1476256 n.2599A>T non_coding_transcript_exon_variant 0.77
rrl 1476260 n.2603A>G non_coding_transcript_exon_variant 0.79
rrl 1476267 n.2610G>C non_coding_transcript_exon_variant 0.79
rrl 1476276 n.2619C>G non_coding_transcript_exon_variant 0.7
rrl 1476281 n.2624T>C non_coding_transcript_exon_variant 0.47
rrl 1476288 n.2631T>C non_coding_transcript_exon_variant 0.26
rrl 1476309 n.2652G>C non_coding_transcript_exon_variant 0.21
rrl 1476311 n.2654G>C non_coding_transcript_exon_variant 0.16
rrl 1476312 n.2655T>C non_coding_transcript_exon_variant 0.16
rrl 1476337 n.2680C>T non_coding_transcript_exon_variant 0.34
rrl 1476359 n.2702C>G non_coding_transcript_exon_variant 0.91
rrl 1476368 n.2711T>C non_coding_transcript_exon_variant 0.45
rrl 1476369 n.2712C>T non_coding_transcript_exon_variant 0.53
rrl 1476381 n.2724G>C non_coding_transcript_exon_variant 0.93
rrl 1476428 n.2771C>T non_coding_transcript_exon_variant 0.82
rrl 1476429 n.2772A>C non_coding_transcript_exon_variant 0.47
rrl 1476466 n.2809C>T non_coding_transcript_exon_variant 0.95
rrl 1476506 n.2849T>C non_coding_transcript_exon_variant 0.95
rrl 1476515 n.2858C>T non_coding_transcript_exon_variant 0.95
rrl 1476517 n.2860C>T non_coding_transcript_exon_variant 0.61
rrl 1476519 n.2862C>T non_coding_transcript_exon_variant 0.33
rrl 1476524 n.2867C>A non_coding_transcript_exon_variant 0.94
rrl 1476525 n.2868A>G non_coding_transcript_exon_variant 0.94
rrl 1476530 n.2873C>T non_coding_transcript_exon_variant 0.31
rrl 1476534 n.2877A>T non_coding_transcript_exon_variant 0.32
rrl 1476536 n.2879G>A non_coding_transcript_exon_variant 0.6
rrl 1476538 n.2881A>G non_coding_transcript_exon_variant 0.93
rrl 1476539 n.2882A>G non_coding_transcript_exon_variant 0.34
rrl 1476540 n.2883C>G non_coding_transcript_exon_variant 0.34
rrl 1476547 n.2890C>T non_coding_transcript_exon_variant 0.42
rrl 1476567 n.2910C>T non_coding_transcript_exon_variant 0.27
rrl 1476584 n.2927C>T non_coding_transcript_exon_variant 0.89
rrl 1476585 n.2928A>G non_coding_transcript_exon_variant 0.89
rrl 1476594 n.2937C>A non_coding_transcript_exon_variant 0.88
rrl 1476603 n.2946G>T non_coding_transcript_exon_variant 0.81
rrl 1476607 n.2950C>T non_coding_transcript_exon_variant 0.82
rrl 1476608 n.2951C>G non_coding_transcript_exon_variant 0.8
rrl 1476614 n.2957A>T non_coding_transcript_exon_variant 0.8
rrl 1476616 n.2959A>G non_coding_transcript_exon_variant 0.8
rrl 1476619 n.2962C>T non_coding_transcript_exon_variant 0.81
rrl 1476628 n.2971T>G non_coding_transcript_exon_variant 0.8
rrl 1476629 n.2972C>A non_coding_transcript_exon_variant 0.8
rrl 1476661 n.3004A>G non_coding_transcript_exon_variant 0.33
rrl 1476665 n.3008T>G non_coding_transcript_exon_variant 0.13
rpsA 1833404 c.-138G>T upstream_gene_variant 0.4
rpsA 1833676 c.135A>G synonymous_variant 0.33
rpsA 1833679 c.138G>T synonymous_variant 0.33
rpsA 1833685 c.144G>C synonymous_variant 0.43
rpsA 1833694 c.153G>T synonymous_variant 0.33
rpsA 1833709 c.168C>T synonymous_variant 0.22
rpsA 1833721 c.180A>G synonymous_variant 0.2
rpsA 1833724 c.183C>T synonymous_variant 0.2
rpsA 1833727 c.186G>C synonymous_variant 0.27
rpsA 1833734 p.Ala65Ser missense_variant 0.19
rpsA 1833745 c.204G>C synonymous_variant 0.2
rpsA 1833748 c.207C>G synonymous_variant 0.23
rpsA 1833763 c.222C>T synonymous_variant 0.21
rpsA 1833781 c.240T>C synonymous_variant 0.15
rpsA 1833782 p.Ser81Asn missense_variant 0.15
rpsA 1833808 c.267G>C synonymous_variant 0.31
rpsA 1833811 c.270G>T synonymous_variant 0.33
rpsA 1833815 p.Thr92Gln missense_variant 0.4
rpsA 1833829 c.288A>G synonymous_variant 0.5
rpsA 1833832 c.291G>A synonymous_variant 0.57
rpsA 1833835 c.294C>T synonymous_variant 0.67
rpsA 1833838 c.297G>C synonymous_variant 0.67
rpsA 1833841 c.300C>G synonymous_variant 0.67
rpsA 1833847 c.306C>G synonymous_variant 0.67
rpsA 1833856 c.315A>G synonymous_variant 0.57
rpsA 1833862 c.321G>A synonymous_variant 0.67
rpsA 1833874 c.333T>C synonymous_variant 0.5
rpsA 1833952 c.411C>T synonymous_variant 0.44
rpsA 1833955 c.414G>C synonymous_variant 0.5
rpsA 1833970 c.429G>C synonymous_variant 0.75
rpsA 1833979 c.438T>C synonymous_variant 0.78
rpsA 1833985 c.444G>C synonymous_variant 0.76
rpsA 1833988 c.447C>G synonymous_variant 0.76
rpsA 1833991 c.450C>T synonymous_variant 0.81
rpsA 1834009 c.468C>T synonymous_variant 0.83
rpsA 1834012 c.471G>C synonymous_variant 0.83
rpsA 1834015 c.474G>C synonymous_variant 0.85
rpsA 1834024 c.483G>C synonymous_variant 0.86
rpsA 1834034 p.Ile165Val missense_variant 0.82
rpsA 1834069 c.528G>C synonymous_variant 0.79
rpsA 1834090 c.549G>T synonymous_variant 0.66
rpsA 1834099 c.558C>G synonymous_variant 0.58
rpsA 1834105 c.564C>T synonymous_variant 0.44
rpsA 1834108 c.567C>G synonymous_variant 0.44
rpsA 1834123 c.582C>G synonymous_variant 0.32
rpsA 1834135 c.594G>T synonymous_variant 0.17
rpsA 1834183 c.642T>C synonymous_variant 0.24
rpsA 1834189 c.648G>C synonymous_variant 0.29
rpsA 1834210 c.669C>T synonymous_variant 0.52
rpsA 1834213 c.672G>C synonymous_variant 0.19
rpsA 1834222 c.681T>C synonymous_variant 0.52
rpsA 1834228 c.687C>T synonymous_variant 0.55
rpsA 1834231 c.690T>C synonymous_variant 0.34
rpsA 1834234 c.693G>C synonymous_variant 0.58
rpsA 1834243 c.702G>C synonymous_variant 0.62
rpsA 1834246 c.705G>T synonymous_variant 0.52
rpsA 1834249 c.708T>C synonymous_variant 0.67
rpsA 1834255 c.714C>G synonymous_variant 0.68
rpsA 1834261 c.720A>T synonymous_variant 0.65
rpsA 1834264 c.723G>C synonymous_variant 0.69
rpsA 1834279 c.738C>T synonymous_variant 0.14
rpsA 1834294 c.753G>C synonymous_variant 0.71
rpsA 1834298 p.Gln253Glu missense_variant 0.68
rpsA 1834306 c.765T>C synonymous_variant 0.5
rpsA 1834307 p.Asp256Gln missense_variant 0.48
rpsA 1834318 c.777C>G synonymous_variant 0.48
rpsA 1834327 c.786G>T synonymous_variant 0.8
rpsA 1834348 c.807T>G synonymous_variant 0.92
rpsA 1834354 c.813G>C synonymous_variant 1.0
rpsA 1834357 c.816T>C synonymous_variant 1.0
rpsA 1834361 c.820_822delTTGinsCTC synonymous_variant 1.0
rpsA 1834366 c.825A>G synonymous_variant 1.0
rpsA 1834369 c.828C>T synonymous_variant 0.52
rpsA 1834378 c.837T>G synonymous_variant 0.97
rpsA 1834387 c.846C>T synonymous_variant 0.54
rpsA 1834395 p.Arg285Gln missense_variant 0.95
rpsA 1834402 c.861C>T synonymous_variant 0.42
rpsA 1834405 c.864C>T synonymous_variant 0.43
rpsA 1834408 c.867C>G synonymous_variant 0.48
rpsA 1834411 c.870T>G synonymous_variant 0.81
rpsA 1834416 p.Ala292Val missense_variant 0.45
rpsA 1834423 c.882G>C synonymous_variant 0.89
rpsA 1834427 p.Ile296Val missense_variant 0.35
rpsA 1834447 c.906C>G synonymous_variant 0.36
rpsA 1834451 c.910_912delTTGinsCTC synonymous_variant 0.88
rpsA 1834468 c.927A>G synonymous_variant 0.84
rpsA 1834474 c.933C>T synonymous_variant 0.72
rpsA 1834483 c.942G>A synonymous_variant 0.37
rpsA 1834486 p.Glu315Asp missense_variant 0.79
rpsA 1834489 c.948T>C synonymous_variant 0.78
rpsA 1834498 c.957C>T synonymous_variant 0.37
rpsA 1834501 c.960G>C synonymous_variant 0.62
rpsA 1834504 c.963G>C synonymous_variant 0.29
rpsA 1834519 c.978G>C synonymous_variant 0.56
rpsA 1834522 c.981C>T synonymous_variant 0.22
rpsA 1834524 p.Glu328Val missense_variant 0.25
tlyA 1917972 c.33A>G synonymous_variant 1.0
katG 2154724 p.Arg463Leu missense_variant 1.0
katG 2155687 p.Asp142Gly missense_variant 0.29
katG 2155992 c.120C>T synonymous_variant 0.18
PPE35 2167926 p.Leu896Ser missense_variant 1.0
PPE35 2168298 p.Pro772Leu missense_variant 0.2
PPE35 2169124 p.Thr497Ser missense_variant 0.14
PPE35 2169320 p.Leu431Phe missense_variant 0.22
PPE35 2169506 c.1107G>T synonymous_variant 0.13
Rv1979c 2222211 c.954G>T synonymous_variant 0.25
Rv1979c 2222820 c.344delC frameshift_variant 0.13
Rv1979c 2223293 c.-129A>G upstream_gene_variant 1.0
Rv1979c 2223316 c.-152T>C upstream_gene_variant 0.33
Rv1979c 2223320 c.-156T>C upstream_gene_variant 0.4
Rv1979c 2223321 c.-157G>A upstream_gene_variant 0.4
Rv1979c 2223325 c.-161G>A upstream_gene_variant 0.4
pncA 2288996 c.246T>C synonymous_variant 0.2
pncA 2289365 c.-125delC upstream_gene_variant 0.83
pncA 2289657 c.-416G>A upstream_gene_variant 0.13
pncA 2290190 c.-949C>T upstream_gene_variant 0.18
kasA 2518894 p.Lys260Asn missense_variant 0.18
eis 2714436 p.Met299Ile missense_variant 0.2
ahpC 2726105 c.-88G>A upstream_gene_variant 0.94
folC 2747615 c.-17C>A upstream_gene_variant 0.5
ribD 2986708 c.-131G>T upstream_gene_variant 0.4
Rv2752c 3065182 p.Ser337Leu missense_variant 0.18
Rv2752c 3066261 c.-70G>C upstream_gene_variant 0.25
thyX 3067705 p.Tyr81Asn missense_variant 0.18
thyA 3074436 c.36C>T synonymous_variant 0.18
ald 3086788 c.-32T>C upstream_gene_variant 1.0
ald 3087514 p.Ala232Val missense_variant 0.29
fbiD 3339038 c.-80C>A upstream_gene_variant 0.5
fbiD 3339389 p.Pro91Gln missense_variant 0.29
Rv3083 3449772 c.1269G>A synonymous_variant 0.4
fprA 3473996 c.-11_-10insA upstream_gene_variant 1.0
fprA 3474790 p.Pro262Ser missense_variant 0.14
fprA 3474904 p.Gly300Trp missense_variant 0.13
fprA 3475212 c.1206T>C synonymous_variant 0.17
Rv3236c 3612121 c.996C>A synonymous_variant 0.29
fbiA 3641225 p.Gly228Glu missense_variant 0.29
fbiB 3642078 p.Pro182Thr missense_variant 0.33
fbiB 3642098 c.564G>A synonymous_variant 1.0
fbiB 3642647 c.1113C>A synonymous_variant 0.22
alr 3840636 p.Pro262Gln missense_variant 1.0
alr 3840947 c.474G>T synonymous_variant 0.4
rpoA 3877636 p.Gln291Ser missense_variant 0.44
rpoA 3877647 c.861C>T synonymous_variant 0.56
rpoA 3877656 c.852T>C synonymous_variant 0.62
rpoA 3877659 c.849G>T synonymous_variant 0.62
rpoA 3877667 p.Ser281Ala missense_variant 0.56
rpoA 3877672 p.Thr279Ser missense_variant 0.45
rpoA 3877677 p.Ala277Ser missense_variant 0.5
rpoA 3877683 c.825G>C synonymous_variant 0.5
rpoA 3877686 c.822A>G synonymous_variant 0.5
rpoA 3877689 c.819C>T synonymous_variant 0.5
rpoA 3877701 p.Val269Ile missense_variant 0.45
rpoA 3877704 c.804G>C synonymous_variant 0.42
rpoA 3877731 c.777G>C synonymous_variant 0.2
rpoA 3877803 c.705G>C synonymous_variant 0.18
rpoA 3877824 c.684G>A synonymous_variant 0.17
rpoA 3877836 c.672A>G synonymous_variant 0.14
rpoA 3877842 c.666A>C synonymous_variant 0.13
rpoA 3877866 c.642G>C synonymous_variant 0.12
rpoA 3877884 c.624G>C synonymous_variant 0.13
rpoA 3877887 c.621G>C synonymous_variant 0.14
rpoA 3877962 c.546G>T synonymous_variant 0.33
rpoA 3877971 p.Asp179Glu missense_variant 0.33
rpoA 3877974 c.534G>C synonymous_variant 0.33
rpoA 3877989 p.Lys173Ala missense_variant 0.5
rpoA 3877992 c.516C>G synonymous_variant 0.5
rpoA 3878001 c.507A>G synonymous_variant 0.5
rpoA 3878115 p.Lys131Asn missense_variant 0.17
rpoA 3878455 p.Arg18Pro missense_variant 0.17
rpoA 3878622 c.-115C>G upstream_gene_variant 1.0
clpC1 4038653 c.2052C>A synonymous_variant 0.13
clpC1 4039144 p.Gln521Lys missense_variant 0.4
clpC1 4039198 p.Glu503Lys missense_variant 0.25
clpC1 4039524 p.Phe394Tyr missense_variant 0.29
clpC1 4039533 p.Asn391Thr missense_variant 0.43
clpC1 4039552 p.Leu385Met missense_variant 0.6
clpC1 4039554 p.Thr384Asn missense_variant 0.6
clpC1 4039556 p.Ala383Val missense_variant 0.6
clpC1 4039559 c.1146C>G synonymous_variant 0.67
clpC1 4039563 p.Ala381Gly missense_variant 0.67
clpC1 4039570 p.Met379Leu missense_variant 0.67
clpC1 4039577 c.1128T>C synonymous_variant 0.67
clpC1 4039580 c.1125C>G synonymous_variant 0.67
clpC1 4039588 p.Ser373Thr missense_variant 0.6
clpC1 4039589 c.1116G>C synonymous_variant 0.6
clpC1 4039592 c.1113G>C synonymous_variant 0.6
clpC1 4039616 c.1089G>C synonymous_variant 0.6
clpC1 4039622 c.1083C>T synonymous_variant 0.56
clpC1 4039630 p.Leu359Val missense_variant 0.44
clpC1 4039745 c.960C>A synonymous_variant 0.2
clpC1 4039802 c.903G>T synonymous_variant 0.33
clpC1 4039814 c.891C>A synonymous_variant 0.25
clpC1 4039817 c.888A>T synonymous_variant 0.22
clpC1 4039820 c.885T>C synonymous_variant 0.22
clpC1 4039829 c.874_876delTTGinsCTC synonymous_variant 0.18
clpC1 4039834 p.Thr291Ser missense_variant 0.17
clpC1 4039838 c.867G>C synonymous_variant 0.14
clpC1 4039850 c.855T>C synonymous_variant 0.2
clpC1 4039865 c.840T>C synonymous_variant 0.18
clpC1 4039871 c.834C>G synonymous_variant 0.18
clpC1 4039875 p.Asn277Arg missense_variant 0.18
clpC1 4039991 c.714G>T synonymous_variant 0.38
clpC1 4040002 p.His235Asn missense_variant 0.38
clpC1 4040003 c.702G>C synonymous_variant 0.43
clpC1 4040009 c.696C>G synonymous_variant 0.46
clpC1 4040021 c.684A>T synonymous_variant 0.62
clpC1 4040024 c.681A>G synonymous_variant 0.65
clpC1 4040030 c.675C>G synonymous_variant 0.52
clpC1 4040033 c.672G>C synonymous_variant 0.62
clpC1 4040036 c.669C>G synonymous_variant 0.27
clpC1 4040057 c.648C>T synonymous_variant 0.41
clpC1 4040063 c.642G>C synonymous_variant 0.8
clpC1 4040066 c.639G>T synonymous_variant 0.44
clpC1 4040081 c.624C>G synonymous_variant 0.44
clpC1 4040087 c.618G>C synonymous_variant 0.76
clpC1 4040090 c.613_615delTCTinsAGC synonymous_variant 0.74
clpC1 4040096 p.Val203Ile missense_variant 0.22
clpC1 4040108 c.597G>C synonymous_variant 0.69
clpC1 4040126 c.579C>T synonymous_variant 0.58
clpC1 4040129 c.576C>G synonymous_variant 0.64
panD 4044125 p.Ala53Ser missense_variant 0.25
embC 4240136 p.Ala92Ser missense_variant 0.29
embC 4242075 p.Arg738Gln missense_variant 0.83
embC 4242287 p.Leu809Ile missense_variant 0.4
embA 4242643 c.-590C>T upstream_gene_variant 1.0
embA 4243782 p.Gly184Arg missense_variant 0.5
embA 4244451 p.Pro407Thr missense_variant 0.29
embA 4244696 p.Lys488Asn missense_variant 0.5
embA 4245883 p.Gly884Asp missense_variant 1.0
embA 4245987 p.Gln919Lys missense_variant 0.25
embB 4247435 p.Arg308* stop_gained 0.22
embB 4247966 p.Ala485Thr missense_variant 0.2
embB 4249026 p.Asp838Gly missense_variant 0.22
embB 4249552 c.3039C>A synonymous_variant 0.2
aftB 4267930 c.907C>A synonymous_variant 0.33
aftB 4268783 c.54C>A synonymous_variant 0.2
ubiA 4269412 p.Gly141Val missense_variant 0.13
ethA 4326230 p.Asp415Gly missense_variant 0.89
ethR 4326577 c.-972G>A upstream_gene_variant 0.18
ethA 4326584 p.Pro297His missense_variant 0.2
ethA 4326783 p.Glu231* stop_gained 0.17
ethR 4327667 p.Arg40His missense_variant 0.18
whiB6 4338595 c.-75delG upstream_gene_variant 1.0
gid 4407588 c.615A>G synonymous_variant 1.0