Rv0668 - c.1386C>T
Drug resistance types
23 Sensitive
24 RR-TB
30 HR-TB
25 MDR-TB
5 Pre-XDR-TB
0 XDR-TB
36 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.1.1.3 | 2 |
| lineage4.3.3 | 3 |
| lineage4.7 | 1 |
| lineage4.9 | 60 |
| lineage4.1.2.1;lineage4.4.1 | 1 |
| lineage4.3.4.2.1 | 4 |
| lineage4.9;lineage7 | 4 |
| lineage4.4.1.1.1 | 1 |
| lineage2.2.1 | 10 |
| La1.8.1 | 1 |
| M.canetti;lineage4.6.4;lineage4.9 | 2 |
| lineage4.3.2.1 | 3 |
| lineage2.1;lineage4.9 | 3 |
| lineage4.4 | 1 |
| lineage4.8 | 4 |
| lineage4.1.2.1;lineage4.9 | 1 |
| La1.7.1;lineage4.9 | 1 |
| La1.3 | 2 |
| lineage3 | 6 |
| La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9 | 3 |
| La1.7.1;La1.7.X-unk4;lineage7 | 1 |
| La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.9 | 1 |
| lineage2.2.1.1 | 1 |
| La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage7 | 1 |
| La1.6;La3;M.canetti;lineage4.2.2 | 1 |
| M.canetti;lineage4.2;lineage4.9 | 1 |
| lineage1.1.1 | 1 |
| La1.6;La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.8.2;lineage4.9 | 1 |
| lineage4 | 2 |
| lineage4.1.2.1 | 2 |
| La1.7.1;La1.7.X-unk4 | 1 |
| lineage2.2.2 | 2 |
| La1.6;La3;M.canetti;lineage3;lineage4.2;lineage4.3.4;lineage4.9;lineage6.3 | 1 |
| M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.9 | 1 |
| La1.6;La3;M.canetti;lineage4.2;lineage4.9 | 1 |
| lineage4.1.2.1;lineage4.4.1.1 | 1 |
| La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.8.2;lineage4.9;lineage7 | 1 |
| M.canetti;lineage4.2 | 1 |
| La1.2.BCG | 1 |
| La1.6 | 1 |
| lineage2.1;lineage4.9;lineage7 | 1 |
| lineage4.3.4 | 1 |
| La1.2 | 1 |
| lineage1;lineage4.9 | 1 |
| lineage4.2.1 | 1 |
| lineage1.2.2.2 | 1 |
| La3;M.canetti;lineage2;lineage4.2;lineage4.3 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 143 |
Geographic prevalence
Country level data for this variant is available for 1 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR12708371 | HR-TB | lineage4.1.1.3 | None | SRR12708419 | Other | lineage4.3.3 | None | SRR7496523 | Other | lineage4.7 | None | ERR926161 | Sensitive | lineage4.9 | None | ERR971389 | Other | lineage4.9 | None | ERR181824 | MDR-TB | lineage4.9 | None | SRR1049725 | Other | lineage4.1.2.1;lineage4.4.1 | None | SRR1049560 | MDR-TB | lineage4.3.4.2.1 | None | SRR6046611 | Sensitive | lineage4.9 | None | SRR3675539 | MDR-TB | lineage4.9;lineage7 | None | SRR11349145 | Pre-XDR-TB | lineage4.4.1.1.1 | None | SRR6832249 | Sensitive | lineage2.2.1 | None | SRR3675231 | MDR-TB | lineage4.9;lineage7 | None | ERR3797060 | Other | La1.8.1 | None | SRR6832787 | Other | lineage2.2.1 | None | ERR387051 | RR-TB | lineage4.9 | None | ERR926154 | Sensitive | lineage4.9 | None | SRR3675446 | RR-TB | lineage4.9 | None | SRR3675586 | RR-TB | M.canetti;lineage4.6.4;lineage4.9 | None | SRR12708407 | HR-TB | lineage4.3.2.1 | None | ERR4818536 | Other | lineage4.9 | None | SRR3675495 | RR-TB | lineage2.1;lineage4.9 | None | ERR736837 | Pre-XDR-TB | lineage4.9 | None | SRR16627752 | RR-TB | lineage4.4 | None | ERR1063855 | Other | lineage4.9 | None | ERR4817628 | Sensitive | lineage4.8 | gb | ERR176778 | HR-TB | lineage4.9 | None | ERR926158 | Sensitive | lineage4.9 | None | SRR22424787 | Sensitive | lineage4.9 | None | ERR926160 | Other | lineage4.9 | None | SRR3675582 | Other | lineage4.9 | None | ERR1063849 | HR-TB | lineage4.9 | None | ERR1063846 | HR-TB | lineage4.9 | None | SRR9971270 | RR-TB | lineage2.2.1 | None | SRR1062928 | Other | lineage4.1.2.1;lineage4.9 | None | ERR926163 | Other | lineage4.9 | None | ERR3445502 | HR-TB | lineage4.9;lineage7 | None | ERR926159 | Sensitive | lineage4.9 | None | ERR323107 | HR-TB | lineage4.9 | None | ERR1063858 | HR-TB | lineage4.9 | None | ERR1063859 | HR-TB | La1.7.1;lineage4.9 | None | ERR4769552 | Sensitive | La1.3 | None | SRR12708396 | MDR-TB | lineage4.3.2.1 | None | SRR1173281 | Other | lineage3 | None | ERR4819546 | HR-TB | lineage3 | None | ERR926164 | Other | lineage4.9 | None | SRR6046824 | MDR-TB | La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9 | None | ERR3445501 | HR-TB | La1.7.1;La1.7.X-unk4;lineage7 | None | SRR3675456 | RR-TB | lineage4.9;lineage7 | None | SRR12708392 | Other | lineage2.2.1 | None | ERR502889 | MDR-TB | La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.9 | None | SRR1183106 | RR-TB | lineage2.2.1.1 | None | ERR926155 | Other | lineage4.9 | None | SRR9971168 | Other | lineage4.3.2.1 | None | ERR4815815 | Sensitive | lineage4.9 | None | SRR1062918 | Other | lineage3 | None | ERR4819863 | RR-TB | lineage4.9 | None | ERR133986 | MDR-TB | La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage7 | None | SRR6045359 | HR-TB | lineage4.9 | None | ERR4769530 | RR-TB | lineage4.9 | None | SRR6046385 | Sensitive | lineage4.9 | None | ERR067681 | MDR-TB | La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9 | None | SRR11662696 | MDR-TB | La1.6;La3;M.canetti;lineage4.2.2 | None | ERR4769554 | RR-TB | lineage4.9 | None | ERR926165 | Other | lineage4.9 | None | SRR3675390 | MDR-TB | La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9 | None | SRR3675550 | RR-TB | M.canetti;lineage4.2;lineage4.9 | None | ERR4596902 | MDR-TB | lineage3 | None | ERR926162 | Sensitive | lineage4.9 | None | ERR4819314 | HR-TB | lineage1.1.1 | None | ERR5311103 | RR-TB | La1.6;La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.8.2;lineage4.9 | None | ERR4769508 | RR-TB | lineage4.9 | None | SRR3675284 | Sensitive | lineage4.9 | None | ERR4798823 | HR-TB | lineage4 | None | SRR1140736 | Other | lineage4.1.2.1 | None | ERR6359066 | HR-TB | lineage4.9 | None | SRR12708399 | MDR-TB | lineage4.3.4.2.1 | None | SRR1049559 | MDR-TB | lineage4.3.4.2.1 | None | ERR3445503 | Other | La1.7.1;La1.7.X-unk4 | None | SRR12708370 | Pre-XDR-TB | lineage2.2.2 | None | SRR7496471 | Sensitive | lineage4 | None | ERR502473 | RR-TB | lineage4.9 | None | ERR502478 | RR-TB | lineage4.9 | None | SRR6046382 | RR-TB | lineage2.2.1 | None | SRR3675280 | RR-TB | lineage4.9 | None | ERR4798406 | MDR-TB | La1.6;La3;M.canetti;lineage3;lineage4.2;lineage4.3.4;lineage4.9;lineage6.3 | None | ERR1035162 | MDR-TB | M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.9 | None | ERR176779 | HR-TB | lineage4.9 | None | SRR12708413 | HR-TB | lineage4.1.1.3 | None | ERR5311079 | MDR-TB | La1.6;La3;M.canetti;lineage4.2;lineage4.9 | None | ERR502474 | RR-TB | lineage4.9 | None | ERR4596910 | Sensitive | lineage4.9 | None | SRR12708409 | HR-TB | lineage4.3.3 | None | SRR1049726 | Other | lineage4.1.2.1;lineage4.4.1.1 | None | ERR4813263 | MDR-TB | lineage4.8 | None | ERR4819462 | Sensitive | lineage4.9 | None | DRR185024 | Other | lineage2.2.2 | None | SRR5341418 | MDR-TB | La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.8.2;lineage4.9;lineage7 | None | SRR21677886 | Sensitive | lineage4.9 | None | ERR1035138 | MDR-TB | lineage2.1;lineage4.9 | None | SRR6046259 | Sensitive | lineage4.9 | None | SRR6045191 | Sensitive | lineage4.9 | None | ERR403298 | MDR-TB | M.canetti;lineage4.2 | None | SRR1915487 | Other | La1.2.BCG | None | ERR3797029 | Other | lineage4.9 | None | SRR3675502 | Sensitive | lineage4.9 | None | SRR10993951 | RR-TB | La1.6 | None | ERR176651 | Other | lineage4.9 | None | SRR12708418 | HR-TB | lineage2.2.1 | None | SRR3675555 | MDR-TB | lineage2.1;lineage4.9;lineage7 | None | SRR1049673 | Pre-XDR-TB | lineage3 | None | ERR736817 | HR-TB | lineage4.3.4 | None | SRR23961549 | Other | La1.2 | None | ERR3439432 | RR-TB | M.canetti;lineage4.6.4;lineage4.9 | None | ERR502481 | RR-TB | lineage4.9 | None | DRR184629 | Other | lineage2.2.1 | None | ERR4817667 | HR-TB | lineage4.8 | None | ERR926156 | Other | lineage4.9 | None | ERR736848 | Other | lineage4.9 | None | ERR926157 | Other | lineage4.9 | None | SRR5153091 | HR-TB | lineage4.3.3 | None | ERR067712 | Sensitive | lineage4.9 | None | ERR4816762 | Sensitive | lineage4.9 | None | ERR181887 | Other | lineage4.9 | None | ERR4818904 | Other | lineage4.8 | None | ERR4818561 | Sensitive | lineage4.9 | None | SRR12708415 | HR-TB | lineage2.2.1 | None | ERR4769514 | Other | La1.3 | None | SRR12708414 | HR-TB | lineage2.2.1 | None | ERR4799478 | Pre-XDR-TB | lineage2.2.1 | None | ERR323045 | HR-TB | lineage1;lineage4.9 | None | SAMN02380982 | MDR-TB | lineage4.3.4.2.1 | None | SRR7755649 | MDR-TB | lineage4.2.1 | None | SRR12708411 | HR-TB | lineage1.2.2.2 | None | ERR4814639 | HR-TB | lineage4.9 | None | ERR1063862 | HR-TB | lineage4.9 | None | ERR736875 | HR-TB | lineage4.9 | None | SRR1140716 | Other | lineage3 | None | ERR4821272 | RR-TB | lineage4.1.2.1 | None | ERR158583 | MDR-TB | La3;M.canetti;lineage2;lineage4.2;lineage4.3 | None | ERR736867 | Other | lineage2.1;lineage4.9 | None | ERR4819383 | RR-TB | lineage4.9 | None | ERR212125 | HR-TB | lineage4.9 | None |
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