TB-Profiler result

Run: ERR4769554

Summary

Run ID: ERR4769554

Sample name:

Date: 01-04-2023 06:44:20

Number of reads: 48123

Percentage reads mapped: 2.13

Strain: lineage4.9

Drug-resistance: RR-TB


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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
lineage4 Euro-American LAM;T;S;X;H None 1.0
lineage4.9 Euro-American (H37Rv-like) T1 None 1.0
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
rpoB 761127 p.Ser441Ala missense_variant 1.0 rifampicin
rpoB 761196 p.Leu464Met missense_variant 0.96 rifampicin
rrs 1472644 n.799C>T non_coding_transcript_exon_variant 1.0 streptomycin
rrs 1473247 n.1402C>A non_coding_transcript_exon_variant 0.99 kanamycin, capreomycin, aminoglycosides, amikacin
rrs 1473329 n.1484G>T non_coding_transcript_exon_variant 1.0 kanamycin, capreomycin, aminoglycosides, amikacin
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
gyrA 6406 c.-896C>T upstream_gene_variant 1.0
gyrB 6446 p.Ala403Ser missense_variant 1.0
rpoB 760982 c.1176G>C synonymous_variant 1.0
rpoB 760988 c.1182C>T synonymous_variant 1.0
rpoB 760991 c.1185G>C synonymous_variant 1.0
rpoB 760997 c.1191G>C synonymous_variant 1.0
rpoB 761006 c.1200C>T synonymous_variant 1.0
rpoB 761015 c.1209G>C synonymous_variant 1.0
rpoB 761021 c.1215G>C synonymous_variant 1.0
rpoB 761027 c.1221A>G synonymous_variant 1.0
rpoB 761030 c.1224G>C synonymous_variant 1.0
rpoB 761036 c.1230G>C synonymous_variant 1.0
rpoB 761037 c.1231T>C synonymous_variant 1.0
rpoB 761051 c.1245G>T synonymous_variant 1.0
rpoB 761054 c.1248G>C synonymous_variant 1.0
rpoB 761057 c.1251G>T synonymous_variant 1.0
rpoB 761060 c.1254C>T synonymous_variant 1.0
rpoB 761066 c.1260G>C synonymous_variant 1.0
rpoB 761084 c.1278C>A synonymous_variant 0.83
rpoB 761088 c.1282_1283delAGinsTC synonymous_variant 1.0
rpoB 761097 c.1291_1293delAGCinsTCG synonymous_variant 1.0
rpoB 761102 c.1296A>G synonymous_variant 1.0
rpoB 761132 c.1326G>T synonymous_variant 1.0
rpoB 761133 c.1327T>C synonymous_variant 1.0
rpoB 761138 c.1332C>G synonymous_variant 1.0
rpoB 761147 c.1341C>T synonymous_variant 0.95
rpoB 761150 c.1344A>C synonymous_variant 0.95
rpoB 761153 c.1347G>C synonymous_variant 0.95
rpoB 761156 c.1350G>C synonymous_variant 0.95
rpoB 761165 c.1359G>C synonymous_variant 0.9
rpoB 761168 c.1362C>G synonymous_variant 0.9
rpoB 761171 c.1365C>T synonymous_variant 0.95
rpoB 761180 c.1374A>C synonymous_variant 0.96
rpoB 761186 p.Glu460Asp missense_variant 0.96
rpoB 761189 c.1383T>C synonymous_variant 0.96
rpoB 761195 c.1389G>C synonymous_variant 0.92
rpoB 761201 c.1395G>A synonymous_variant 0.93
rpoB 761207 c.1401C>T synonymous_variant 0.97
rpoB 761219 c.1413G>C synonymous_variant 0.97
rpoB 761246 c.1440C>T synonymous_variant 0.97
rpoB 761261 c.1455G>T synonymous_variant 0.96
rpoB 761262 p.Pro486Ser missense_variant 0.96
rpoB 761282 c.1476C>T synonymous_variant 0.95
rpoB 761286 c.1480C>T synonymous_variant 0.94
rpoB 761289 p.Ser495Ala missense_variant 0.94
rpoB 761292 p.Val496Thr missense_variant 1.0
rpoB 761303 c.1497G>C synonymous_variant 1.0
rpoB 761304 p.Val500Ile missense_variant 1.0
rpoB 761318 c.1512G>C synonymous_variant 1.0
rpoB 761327 c.1521A>G synonymous_variant 1.0
rpoB 761330 c.1524G>C synonymous_variant 1.0
rpoB 761333 c.1527G>T synonymous_variant 1.0
rpoB 761349 p.Asp515Asn missense_variant 1.0
rpoB 761354 c.1548C>T synonymous_variant 1.0
rpoB 762077 c.2271G>A synonymous_variant 1.0
rpoB 762080 c.2274G>C synonymous_variant 1.0
rpoB 762086 c.2280G>C synonymous_variant 1.0
rpoB 762092 c.2286G>A synonymous_variant 1.0
rpoB 762178 p.Arg791Gln missense_variant 0.8
rpoB 762181 p.Asp792Ala missense_variant 0.8
rpoB 762185 c.2379G>T synonymous_variant 0.8
rpoB 762197 c.2391C>G synonymous_variant 0.83
rpoB 762206 c.2400C>G synonymous_variant 0.83
rpoB 762212 c.2406G>C synonymous_variant 0.83
rpoB 762228 c.2422C>T synonymous_variant 0.8
rpoB 762233 c.2427G>C synonymous_variant 0.8
rpoB 762245 c.2439G>C synonymous_variant 0.8
rpoB 762254 c.2448T>C synonymous_variant 0.8
rpoB 762273 p.Ala823Ser missense_variant 0.8
rpoB 762281 c.2475G>A synonymous_variant 0.8
rpoB 762287 c.2481C>T synonymous_variant 1.0
rpoB 762293 c.2487T>C synonymous_variant 1.0
rpoB 762296 c.2490G>C synonymous_variant 1.0
rpoC 762917 c.-453C>T upstream_gene_variant 1.0
rpoC 762920 c.-450C>T upstream_gene_variant 1.0
rpoC 762929 c.-441G>T upstream_gene_variant 1.0
rpoC 762938 c.-432G>C upstream_gene_variant 1.0
rpoC 762956 c.-414G>C upstream_gene_variant 1.0
rpoC 762962 c.-408C>T upstream_gene_variant 1.0
rpoC 762971 c.-399G>T upstream_gene_variant 1.0
rpoC 762983 c.-387C>T upstream_gene_variant 1.0
rpoC 763486 c.117T>C synonymous_variant 0.93
rpoC 763492 c.123G>C synonymous_variant 0.94
rpoC 763498 c.129G>A synonymous_variant 0.94
rpoC 763505 c.136C>T synonymous_variant 0.95
rpoC 763513 c.144C>T synonymous_variant 0.96
rpoC 763516 c.147G>A synonymous_variant 0.96
rpoC 763528 c.159G>C synonymous_variant 0.96
rpoC 763531 c.162G>C synonymous_variant 0.96
rpoC 763534 c.165T>C synonymous_variant 0.96
rpoC 763537 c.168C>G synonymous_variant 0.93
rpoC 763546 c.177A>G synonymous_variant 0.97
rpoC 763558 c.189C>T synonymous_variant 0.97
rpoC 763570 c.201G>T synonymous_variant 0.97
rpoC 763573 c.204G>C synonymous_variant 0.97
rpoC 763576 c.207C>T synonymous_variant 0.97
rpoC 763578 p.Phe70Tyr missense_variant 0.97
rpoC 763594 c.225C>T synonymous_variant 1.0
rpoC 763618 c.249C>T synonymous_variant 1.0
rpoC 763660 c.291T>C synonymous_variant 1.0
rpoC 763663 c.294C>T synonymous_variant 1.0
rpoC 763666 c.297G>T synonymous_variant 1.0
rpoC 763696 c.327T>C synonymous_variant 1.0
rpoC 763699 c.330G>T synonymous_variant 1.0
rpoC 763702 c.333C>G synonymous_variant 1.0
rpoC 763708 c.339G>C synonymous_variant 1.0
rpoC 763709 c.340C>T synonymous_variant 1.0
rpoC 763714 c.345G>T synonymous_variant 1.0
rpoC 763717 c.348T>C synonymous_variant 1.0
rpoC 763732 c.363C>T synonymous_variant 1.0
rpoC 763744 c.375G>C synonymous_variant 1.0
rpoC 763747 c.378G>A synonymous_variant 1.0
rpoC 763751 p.Ile128Val missense_variant 1.0
rpoC 763772 p.Val135Met missense_variant 1.0
rpoC 764536 c.1167G>C synonymous_variant 1.0
rpoC 764548 c.1179G>A synonymous_variant 1.0
rpoC 764554 c.1185C>T synonymous_variant 1.0
rpoC 764561 p.Pro398Ala missense_variant 1.0
rpoC 764575 c.1206T>G synonymous_variant 1.0
rpoC 764581 c.1212T>C synonymous_variant 1.0
rpoC 764582 p.Leu405Met missense_variant 1.0
rpoC 764587 c.1218C>G synonymous_variant 1.0
rpoC 764593 c.1224C>T synonymous_variant 1.0
rpoC 764602 c.1233C>T synonymous_variant 1.0
rpoC 764605 c.1236G>T synonymous_variant 1.0
rpoC 764611 c.1242G>T synonymous_variant 1.0
rpoC 764621 c.1252_1254delCTCinsTTG synonymous_variant 1.0
rpoC 764626 c.1257C>T synonymous_variant 1.0
rpoC 764635 c.1266C>G synonymous_variant 1.0
rpoC 764650 c.1281G>T synonymous_variant 1.0
rpoC 764665 c.1296C>G synonymous_variant 1.0
rpoC 764668 c.1299C>T synonymous_variant 1.0
rpoC 764677 c.1308C>G synonymous_variant 1.0
rpoC 764681 c.1312C>T synonymous_variant 1.0
rpoC 764692 c.1323C>T synonymous_variant 1.0
rpoC 764706 p.Leu446Gln missense_variant 1.0
rpoC 764714 c.1345C>T synonymous_variant 1.0
rpoC 764720 c.1351C>T synonymous_variant 1.0
rpoC 764731 c.1362G>C synonymous_variant 1.0
rpoC 764746 c.1377G>C synonymous_variant 1.0
rpoC 764752 c.1383G>C synonymous_variant 1.0
rpoC 764755 c.1386C>T synonymous_variant 1.0
rpoC 764764 c.1395T>C synonymous_variant 1.0
rpoC 764767 c.1398G>T synonymous_variant 1.0
rpoC 764780 c.1411_1412delAGinsTC synonymous_variant 1.0
rpoC 764803 c.1434C>T synonymous_variant 1.0
rpoC 764804 p.Gln479Tyr missense_variant 1.0
rpoC 764812 c.1443C>G synonymous_variant 1.0
rpoC 764815 c.1446A>G synonymous_variant 1.0
rpoC 764827 c.1458G>C synonymous_variant 1.0
rpoC 764843 p.Ala492Thr missense_variant 1.0
rpoC 764857 c.1488G>T synonymous_variant 1.0
rpoC 764858 c.1489T>C synonymous_variant 1.0
rpoC 764869 c.1500C>T synonymous_variant 1.0
rpoC 764872 c.1503A>T synonymous_variant 1.0
rpoC 764887 c.1518G>C synonymous_variant 1.0
rpoC 764888 c.1519T>C synonymous_variant 1.0
rpoC 764896 c.1527C>T synonymous_variant 1.0
rpoC 764902 c.1533C>G synonymous_variant 1.0
rpoC 764911 c.1542A>G synonymous_variant 1.0
rpoC 764912 p.Met515Gln missense_variant 1.0
rpoC 764920 c.1551G>T synonymous_variant 1.0
rpoC 764926 c.1557C>T synonymous_variant 1.0
rrs 1472075 n.230A>G non_coding_transcript_exon_variant 0.75
rrs 1472078 n.233C>T non_coding_transcript_exon_variant 0.75
rrs 1472080 n.235G>A non_coding_transcript_exon_variant 0.88
rrs 1472106 n.261G>A non_coding_transcript_exon_variant 0.98
rrs 1472108 n.263C>T non_coding_transcript_exon_variant 0.98
rrs 1472150 n.305T>A non_coding_transcript_exon_variant 0.99
rrs 1472172 n.327T>C non_coding_transcript_exon_variant 0.99
rrs 1472225 n.380C>A non_coding_transcript_exon_variant 1.0
rrs 1472251 n.406G>A non_coding_transcript_exon_variant 1.0
rrs 1472286 n.441C>G non_coding_transcript_exon_variant 1.0
rrs 1472289 n.444T>C non_coding_transcript_exon_variant 1.0
rrs 1472290 n.445C>G non_coding_transcript_exon_variant 1.0
rrs 1472293 n.448C>A non_coding_transcript_exon_variant 1.0
rrs 1472297 n.453_465delGTCCGGGTTCTCT non_coding_transcript_exon_variant 1.0
rrs 1472315 n.470T>G non_coding_transcript_exon_variant 1.0
rrs 1472324 n.479G>C non_coding_transcript_exon_variant 1.0
rrs 1472328 n.483G>C non_coding_transcript_exon_variant 1.0
rrs 1472338 n.493A>G non_coding_transcript_exon_variant 1.0
rrs 1472344 n.499C>T non_coding_transcript_exon_variant 1.0
rrs 1472379 n.534T>C non_coding_transcript_exon_variant 0.98
rrs 1472382 n.537G>A non_coding_transcript_exon_variant 1.0
rrs 1472400 n.555C>T non_coding_transcript_exon_variant 0.93
rrs 1472422 n.577T>C non_coding_transcript_exon_variant 1.0
rrs 1472435 n.590T>C non_coding_transcript_exon_variant 1.0
rrs 1472476 n.631A>G non_coding_transcript_exon_variant 0.83
rrs 1472494 n.649A>G non_coding_transcript_exon_variant 0.97
rrs 1472496 n.651T>A non_coding_transcript_exon_variant 0.97
rrs 1472498 n.653C>T non_coding_transcript_exon_variant 0.97
rrs 1472530 n.685G>A non_coding_transcript_exon_variant 1.0
rrs 1472558 n.713G>A non_coding_transcript_exon_variant 1.0
rrs 1472569 n.724G>A non_coding_transcript_exon_variant 1.0
rrs 1472581 n.736A>T non_coding_transcript_exon_variant 1.0
rrs 1472584 n.739A>T non_coding_transcript_exon_variant 0.99
rrs 1472607 n.762G>A non_coding_transcript_exon_variant 0.99
rrs 1472655 n.810G>T non_coding_transcript_exon_variant 0.99
rrs 1472660 n.815T>C non_coding_transcript_exon_variant 1.0
rrs 1472673 n.828T>G non_coding_transcript_exon_variant 0.98
rrs 1472674 n.829T>G non_coding_transcript_exon_variant 0.98
rrs 1472675 n.830T>A non_coding_transcript_exon_variant 0.99
rrs 1472677 n.832C>A non_coding_transcript_exon_variant 0.99
rrs 1472692 n.847T>C non_coding_transcript_exon_variant 0.99
rrs 1472714 n.869A>G non_coding_transcript_exon_variant 1.0
rrs 1472790 n.945T>C non_coding_transcript_exon_variant 1.0
rrs 1472880 n.1035G>A non_coding_transcript_exon_variant 1.0
rrs 1472895 n.1050C>T non_coding_transcript_exon_variant 1.0
rrs 1472952 n.1107T>C non_coding_transcript_exon_variant 0.99
rrs 1472955 n.1110C>T non_coding_transcript_exon_variant 0.99
rrs 1472956 n.1111T>C non_coding_transcript_exon_variant 1.0
rrs 1472957 n.1112C>T non_coding_transcript_exon_variant 1.0
rrs 1472973 n.1128A>G non_coding_transcript_exon_variant 1.0
rrs 1472987 n.1142G>A non_coding_transcript_exon_variant 1.0
rrs 1472989 n.1144G>A non_coding_transcript_exon_variant 1.0
rrs 1472990 n.1145A>G non_coding_transcript_exon_variant 1.0
rrs 1473035 n.1190G>A non_coding_transcript_exon_variant 1.0
rrs 1473055 n.1210C>T non_coding_transcript_exon_variant 0.99
rrs 1473056 n.1211A>T non_coding_transcript_exon_variant 1.0
rrs 1473066 n.1221A>G non_coding_transcript_exon_variant 1.0
rrs 1473089 n.1244A>T non_coding_transcript_exon_variant 1.0
rrs 1473093 n.1248C>T non_coding_transcript_exon_variant 1.0
rrs 1473100 n.1255G>A non_coding_transcript_exon_variant 1.0
rrs 1473104 n.1259C>T non_coding_transcript_exon_variant 1.0
rrs 1473110 n.1265T>G non_coding_transcript_exon_variant 1.0
rrs 1473111 n.1266A>G non_coding_transcript_exon_variant 1.0
rrs 1473115 n.1270G>T non_coding_transcript_exon_variant 1.0
rrs 1473121 n.1276T>C non_coding_transcript_exon_variant 1.0
rrs 1473122 n.1277T>A non_coding_transcript_exon_variant 1.0
rrs 1473129 n.1284C>T non_coding_transcript_exon_variant 1.0
rrs 1473147 n.1302G>T non_coding_transcript_exon_variant 1.0
rrs 1473164 n.1319C>A non_coding_transcript_exon_variant 0.99
rrs 1473252 n.1407T>C non_coding_transcript_exon_variant 1.0
rrs 1473259 n.1414C>T non_coding_transcript_exon_variant 1.0
rrs 1473276 n.1431A>G non_coding_transcript_exon_variant 1.0
rrs 1473290 n.1445C>T non_coding_transcript_exon_variant 1.0
rrs 1473301 n.1456T>C non_coding_transcript_exon_variant 1.0
rrs 1473315 n.1470T>C non_coding_transcript_exon_variant 1.0
rrs 1473316 n.1471C>T non_coding_transcript_exon_variant 1.0
rrl 1473888 n.231T>A non_coding_transcript_exon_variant 1.0
rrl 1473898 n.241C>T non_coding_transcript_exon_variant 1.0
rrl 1473899 n.242A>G non_coding_transcript_exon_variant 1.0
rrl 1473916 n.259C>A non_coding_transcript_exon_variant 1.0
rrl 1474142 n.485C>G non_coding_transcript_exon_variant 0.75
rrl 1474151 n.494C>T non_coding_transcript_exon_variant 0.92
rrl 1474155 n.498G>A non_coding_transcript_exon_variant 0.93
rrl 1474164 n.507C>T non_coding_transcript_exon_variant 0.94
rrl 1474174 n.517A>G non_coding_transcript_exon_variant 0.94
rrl 1474181 n.524C>T non_coding_transcript_exon_variant 0.85
rrl 1474202 n.545T>C non_coding_transcript_exon_variant 1.0
rrl 1474249 n.592G>T non_coding_transcript_exon_variant 1.0
rrl 1474269 n.612C>T non_coding_transcript_exon_variant 1.0
rrl 1474275 n.618T>G non_coding_transcript_exon_variant 1.0
rrl 1474281 n.624A>G non_coding_transcript_exon_variant 1.0
rrl 1474284 n.631_633delCCT non_coding_transcript_exon_variant 1.0
rrl 1474293 n.637_651delCCTCTCCGGAGGAGG non_coding_transcript_exon_variant 1.0
rrl 1474310 n.653T>G non_coding_transcript_exon_variant 1.0
rrl 1474316 n.659T>C non_coding_transcript_exon_variant 1.0
rrl 1474348 n.691C>T non_coding_transcript_exon_variant 0.99
rrl 1474351 n.694G>T non_coding_transcript_exon_variant 0.99
rrl 1474353 n.696A>T non_coding_transcript_exon_variant 0.99
rrl 1474354 n.697C>T non_coding_transcript_exon_variant 0.99
rrl 1474356 n.699T>C non_coding_transcript_exon_variant 0.99
rrl 1474362 n.705A>G non_coding_transcript_exon_variant 0.99
rrl 1474365 n.708G>A non_coding_transcript_exon_variant 0.99
rrl 1474384 n.727C>T non_coding_transcript_exon_variant 0.98
rrl 1474387 n.730C>T non_coding_transcript_exon_variant 0.98
rrl 1474450 n.793T>A non_coding_transcript_exon_variant 0.98
rrl 1474454 n.797G>A non_coding_transcript_exon_variant 0.98
rrl 1474467 n.810A>G non_coding_transcript_exon_variant 0.99
rrl 1474488 n.831G>T non_coding_transcript_exon_variant 0.99
rrl 1474498 n.841G>T non_coding_transcript_exon_variant 1.0
rrl 1474505 n.848C>G non_coding_transcript_exon_variant 1.0
rrl 1474516 n.859C>A non_coding_transcript_exon_variant 1.0
rrl 1474529 n.872A>C non_coding_transcript_exon_variant 1.0
rrl 1474530 n.873G>A non_coding_transcript_exon_variant 1.0
rrl 1474537 n.880G>A non_coding_transcript_exon_variant 1.0
rrl 1474539 n.882C>T non_coding_transcript_exon_variant 0.98
rrl 1474540 n.883T>G non_coding_transcript_exon_variant 1.0
rrl 1474625 n.969_970delTG non_coding_transcript_exon_variant 0.98
rrl 1474631 n.974_975insT non_coding_transcript_exon_variant 1.0
rrl 1474634 n.978_981delCACC non_coding_transcript_exon_variant 1.0
rrl 1474640 n.983_984insTTGCT non_coding_transcript_exon_variant 1.0
rrl 1474663 n.1006C>T non_coding_transcript_exon_variant 1.0
rrl 1474676 n.1019T>A non_coding_transcript_exon_variant 1.0
rrl 1474692 n.1035G>A non_coding_transcript_exon_variant 1.0
rrl 1474722 n.1065T>C non_coding_transcript_exon_variant 1.0
rrl 1474734 n.1077G>T non_coding_transcript_exon_variant 1.0
rrl 1474736 n.1079C>T non_coding_transcript_exon_variant 1.0
rrl 1474749 n.1092C>T non_coding_transcript_exon_variant 1.0
rrl 1474751 n.1094G>A non_coding_transcript_exon_variant 1.0
rrl 1474753 n.1097delC non_coding_transcript_exon_variant 1.0
rrl 1474777 n.1120T>C non_coding_transcript_exon_variant 1.0
rrl 1474779 n.1122G>A non_coding_transcript_exon_variant 1.0
rrl 1474780 n.1123C>T non_coding_transcript_exon_variant 1.0
rrl 1474782 n.1125G>A non_coding_transcript_exon_variant 1.0
rrl 1474783 n.1126G>A non_coding_transcript_exon_variant 1.0
rrl 1474794 n.1137C>T non_coding_transcript_exon_variant 1.0
rrl 1474823 n.1166C>G non_coding_transcript_exon_variant 1.0
rrl 1474827 n.1170C>T non_coding_transcript_exon_variant 1.0
rrl 1474830 n.1173A>T non_coding_transcript_exon_variant 1.0
rrl 1474831 n.1174A>T non_coding_transcript_exon_variant 1.0
rrl 1474864 n.1207C>T non_coding_transcript_exon_variant 1.0
rrl 1474904 n.1247G>C non_coding_transcript_exon_variant 1.0
rrl 1474905 n.1248T>C non_coding_transcript_exon_variant 1.0
rrl 1474932 n.1275C>T non_coding_transcript_exon_variant 1.0
rrl 1475060 n.1404delC non_coding_transcript_exon_variant 1.0
rrl 1475065 n.1408G>A non_coding_transcript_exon_variant 1.0
rrl 1475067 n.1410A>G non_coding_transcript_exon_variant 1.0
rrl 1475068 n.1411A>G non_coding_transcript_exon_variant 1.0
rrl 1475076 n.1419C>A non_coding_transcript_exon_variant 1.0
rrl 1475078 n.1421T>C non_coding_transcript_exon_variant 1.0
rrl 1475079 n.1422T>C non_coding_transcript_exon_variant 1.0
rrl 1475081 n.1424C>T non_coding_transcript_exon_variant 1.0
rrl 1475088 n.1431A>G non_coding_transcript_exon_variant 1.0
rrl 1475090 n.1433A>T non_coding_transcript_exon_variant 1.0
rrl 1475093 n.1436C>T non_coding_transcript_exon_variant 1.0
rrl 1475104 n.1447T>A non_coding_transcript_exon_variant 1.0
rrl 1475108 n.1451C>T non_coding_transcript_exon_variant 1.0
rrl 1475111 n.1454G>A non_coding_transcript_exon_variant 1.0
rrl 1475114 n.1457C>T non_coding_transcript_exon_variant 1.0
rrl 1475116 n.1459G>A non_coding_transcript_exon_variant 1.0
rrl 1475119 n.1462C>T non_coding_transcript_exon_variant 1.0
rrl 1475124 n.1467A>T non_coding_transcript_exon_variant 1.0
rrl 1475171 n.1514C>T non_coding_transcript_exon_variant 1.0
rrl 1475499 n.1842C>T non_coding_transcript_exon_variant 1.0
rrl 1475515 n.1858G>A non_coding_transcript_exon_variant 1.0
rrl 1475526 n.1869C>A non_coding_transcript_exon_variant 1.0
rrl 1475531 n.1874C>T non_coding_transcript_exon_variant 1.0
rrl 1475539 n.1882A>T non_coding_transcript_exon_variant 1.0
rrl 1475545 n.1888T>G non_coding_transcript_exon_variant 1.0
rrl 1475548 n.1891C>T non_coding_transcript_exon_variant 1.0
rrl 1475549 n.1892T>C non_coding_transcript_exon_variant 1.0
rrl 1475672 n.2015C>T non_coding_transcript_exon_variant 1.0
rrl 1475673 n.2016T>C non_coding_transcript_exon_variant 1.0
rrl 1475699 n.2042C>T non_coding_transcript_exon_variant 1.0
rrl 1475722 n.2065G>T non_coding_transcript_exon_variant 0.99
rrl 1475752 n.2095C>T non_coding_transcript_exon_variant 0.99
rrl 1475757 n.2100_2101insG non_coding_transcript_exon_variant 1.0
rrl 1475760 n.2103C>T non_coding_transcript_exon_variant 0.99
rrl 1475762 n.2105G>T non_coding_transcript_exon_variant 1.0
rrl 1475763 n.2106C>T non_coding_transcript_exon_variant 0.99
rrl 1475764 n.2107A>T non_coding_transcript_exon_variant 1.0
rrl 1475765 n.2108A>G non_coding_transcript_exon_variant 0.99
rrl 1475769 n.2112_2113insC non_coding_transcript_exon_variant 1.0
rrl 1475869 n.2212C>A non_coding_transcript_exon_variant 1.0
rrl 1475881 n.2224T>C non_coding_transcript_exon_variant 1.0
rrl 1475883 n.2226A>T non_coding_transcript_exon_variant 1.0
rrl 1475898 n.2241A>G non_coding_transcript_exon_variant 1.0
rrl 1475899 n.2242G>A non_coding_transcript_exon_variant 1.0
rrl 1475916 n.2259C>G non_coding_transcript_exon_variant 1.0
rrl 1475937 n.2280A>T non_coding_transcript_exon_variant 1.0
rrl 1475943 n.2286G>A non_coding_transcript_exon_variant 1.0
rrl 1475952 n.2295A>G non_coding_transcript_exon_variant 1.0
rrl 1475963 n.2306G>A non_coding_transcript_exon_variant 1.0
rrl 1475970 n.2313C>T non_coding_transcript_exon_variant 1.0
rrl 1475975 n.2318C>T non_coding_transcript_exon_variant 1.0
rrl 1475977 n.2320A>G non_coding_transcript_exon_variant 0.99
rrl 1475978 n.2321C>T non_coding_transcript_exon_variant 1.0
rrl 1475988 n.2331A>G non_coding_transcript_exon_variant 1.0
rrl 1475997 n.2340A>G non_coding_transcript_exon_variant 1.0
rrl 1475998 n.2341C>T non_coding_transcript_exon_variant 1.0
rrl 1476001 n.2344T>C non_coding_transcript_exon_variant 1.0
rrl 1476025 n.2368G>A non_coding_transcript_exon_variant 1.0
rrl 1476033 n.2376T>G non_coding_transcript_exon_variant 1.0
rrl 1476040 n.2383C>T non_coding_transcript_exon_variant 1.0
rrl 1476046 n.2389G>T non_coding_transcript_exon_variant 1.0
rrl 1476049 n.2392C>T non_coding_transcript_exon_variant 1.0
rrl 1476076 n.2419A>G non_coding_transcript_exon_variant 1.0
rrl 1476079 n.2422G>A non_coding_transcript_exon_variant 1.0
rrl 1476080 n.2423T>C non_coding_transcript_exon_variant 1.0
rrl 1476081 n.2424A>T non_coding_transcript_exon_variant 1.0
rrl 1476082 n.2425T>C non_coding_transcript_exon_variant 1.0
rrl 1476086 n.2429G>A non_coding_transcript_exon_variant 1.0
rrl 1476087 n.2430C>T non_coding_transcript_exon_variant 1.0
rrl 1476095 n.2438C>T non_coding_transcript_exon_variant 1.0
rrl 1476104 n.2447T>G non_coding_transcript_exon_variant 1.0
rrl 1476105 n.2448G>T non_coding_transcript_exon_variant 1.0
rrl 1476110 n.2453G>C non_coding_transcript_exon_variant 1.0
rrl 1476113 n.2456T>G non_coding_transcript_exon_variant 1.0
rrl 1476115 n.2458T>C non_coding_transcript_exon_variant 1.0
rrl 1476130 n.2473G>A non_coding_transcript_exon_variant 1.0
rrl 1476131 n.2474C>T non_coding_transcript_exon_variant 1.0
rrl 1476164 n.2507A>G non_coding_transcript_exon_variant 1.0
rrl 1476165 n.2508T>A non_coding_transcript_exon_variant 1.0
rrl 1476194 n.2537A>G non_coding_transcript_exon_variant 1.0
rrl 1476200 n.2543A>T non_coding_transcript_exon_variant 1.0
rrl 1476214 n.2557G>T non_coding_transcript_exon_variant 1.0
rrl 1476215 n.2558C>T non_coding_transcript_exon_variant 1.0
rrl 1476224 n.2567A>G non_coding_transcript_exon_variant 1.0
rrl 1476245 n.2588C>T non_coding_transcript_exon_variant 1.0
rrl 1476250 n.2593C>G non_coding_transcript_exon_variant 1.0
rrl 1476252 n.2595T>G non_coding_transcript_exon_variant 1.0
rrl 1476256 n.2599A>G non_coding_transcript_exon_variant 1.0
rrl 1476257 n.2600G>C non_coding_transcript_exon_variant 1.0
rrl 1476260 n.2603A>G non_coding_transcript_exon_variant 0.99
rrl 1476281 n.2624T>C non_coding_transcript_exon_variant 1.0
rrl 1476308 n.2651G>T non_coding_transcript_exon_variant 1.0
rrl 1476311 n.2654G>C non_coding_transcript_exon_variant 1.0
rrl 1476312 n.2655T>C non_coding_transcript_exon_variant 1.0
rrl 1476337 n.2680C>T non_coding_transcript_exon_variant 1.0
rrl 1476359 n.2702C>G non_coding_transcript_exon_variant 1.0
rrl 1476381 n.2724G>C non_coding_transcript_exon_variant 1.0
rrl 1476428 n.2771C>T non_coding_transcript_exon_variant 1.0
rrl 1476429 n.2772A>T non_coding_transcript_exon_variant 1.0
rrl 1476466 n.2809C>T non_coding_transcript_exon_variant 0.99
rrl 1476481 n.2824T>C non_coding_transcript_exon_variant 0.99
rrl 1476506 n.2849T>C non_coding_transcript_exon_variant 0.99
rrl 1476515 n.2858C>T non_coding_transcript_exon_variant 0.98
rrl 1476519 n.2862C>T non_coding_transcript_exon_variant 0.98
rrl 1476524 n.2867C>T non_coding_transcript_exon_variant 1.0
rrl 1476525 n.2868A>G non_coding_transcript_exon_variant 0.98
rrl 1476530 n.2873C>T non_coding_transcript_exon_variant 0.98
rrl 1476534 n.2877A>T non_coding_transcript_exon_variant 0.98
rrl 1476538 n.2881A>G non_coding_transcript_exon_variant 0.98
rrl 1476539 n.2882A>G non_coding_transcript_exon_variant 1.0
rrl 1476540 n.2883C>T non_coding_transcript_exon_variant 1.0
rrl 1476547 n.2890C>T non_coding_transcript_exon_variant 0.98
rrl 1476583 n.2926G>A non_coding_transcript_exon_variant 0.75
rrl 1476584 n.2927C>T non_coding_transcript_exon_variant 1.0
rrl 1476585 n.2928A>G non_coding_transcript_exon_variant 1.0
rrl 1476594 n.2937C>T non_coding_transcript_exon_variant 1.0
rrl 1476603 n.2946G>A non_coding_transcript_exon_variant 1.0
rpsA 1833676 c.135A>G synonymous_variant 1.0
rpsA 1833679 c.138G>C synonymous_variant 1.0
rpsA 1833685 c.144G>C synonymous_variant 1.0
rpsA 1833694 c.153G>C synonymous_variant 1.0
rpsA 1833698 c.157_159delCTCinsTTG synonymous_variant 1.0
rpsA 1833727 c.186G>A synonymous_variant 1.0
rpsA 1833734 p.Ala65Ser missense_variant 1.0
rpsA 1833742 c.201A>G synonymous_variant 1.0
rpsA 1833761 p.Val74Ile missense_variant 1.0
rpsA 1833764 p.Asp75Asn missense_variant 1.0
rpsA 1833769 c.228C>T synonymous_variant 1.0
rpsA 1833770 p.Asn77Asp missense_variant 1.0
rpsA 1833775 p.Glu78Asp missense_variant 1.0
rpsA 1833778 c.237C>T synonymous_variant 1.0
rpsA 1833782 p.Ser81Ala missense_variant 1.0
rpsA 1833787 c.246C>G synonymous_variant 1.0
rpsA 1833793 c.252C>T synonymous_variant 1.0
rpsA 1833802 c.261A>G synonymous_variant 1.0
rpsA 1833805 c.264C>T synonymous_variant 1.0
rpsA 1833811 c.270G>T synonymous_variant 1.0
rpsA 1833820 c.279G>A synonymous_variant 1.0
rpsA 1833832 c.291G>A synonymous_variant 1.0
rpsA 1833835 c.294C>T synonymous_variant 1.0
rpsA 1833838 c.297G>C synonymous_variant 1.0
rpsA 1833841 c.300C>G synonymous_variant 1.0
rpsA 1833847 c.306C>G synonymous_variant 1.0
rpsA 1833856 c.315A>G synonymous_variant 1.0
rpsA 1833862 c.321G>T synonymous_variant 1.0
rpsA 1833874 c.333T>C synonymous_variant 1.0
rpsA 1833928 c.387G>C synonymous_variant 1.0
rpsA 1833955 c.414G>C synonymous_variant 1.0
rpsA 1833961 c.420C>G synonymous_variant 1.0
rpsA 1833970 c.429G>T synonymous_variant 1.0
rpsA 1833976 c.435C>T synonymous_variant 1.0
rpsA 1833979 c.438T>C synonymous_variant 1.0
rpsA 1833994 c.453G>C synonymous_variant 1.0
rpsA 1833995 c.454C>T synonymous_variant 1.0
rpsA 1834000 c.459G>C synonymous_variant 1.0
rpsA 1834009 c.468C>T synonymous_variant 1.0
rpsA 1834012 c.471G>C synonymous_variant 1.0
rpsA 1834015 c.474G>C synonymous_variant 1.0
rpsA 1834025 p.Gln162Ala missense_variant 1.0
rpsA 1834040 p.Lys167Gln missense_variant 1.0
rpsA 1834043 p.Glu168Gln missense_variant 1.0
rpsA 1834046 p.Ile169Leu missense_variant 1.0
rpsA 1834051 c.510G>A synonymous_variant 1.0
rpsA 1834093 c.552G>T synonymous_variant 1.0
rpsA 1834102 c.561T>C synonymous_variant 1.0
rpsA 1834105 c.564C>T synonymous_variant 1.0
rpsA 1834108 c.567C>A synonymous_variant 1.0
rpsA 1834114 c.573G>C synonymous_variant 1.0
rpsA 1834195 c.654G>C synonymous_variant 1.0
rpsA 1834210 c.669C>T synonymous_variant 1.0
rpsA 1834213 c.672G>C synonymous_variant 1.0
rpsA 1834219 c.678C>G synonymous_variant 1.0
rpsA 1834222 c.681T>C synonymous_variant 1.0
rpsA 1834228 c.687C>T synonymous_variant 1.0
rpsA 1834231 c.690T>C synonymous_variant 1.0
rpsA 1834234 c.693G>C synonymous_variant 1.0
rpsA 1834240 c.699T>C synonymous_variant 1.0
rpsA 1834249 c.708T>C synonymous_variant 1.0
rpsA 1834252 c.711C>G synonymous_variant 1.0
rpsA 1834261 c.720A>G synonymous_variant 1.0
rpsA 1834264 c.723G>C synonymous_variant 1.0
rpsA 1834285 c.744G>C synonymous_variant 1.0
rpsA 1834294 c.753G>C synonymous_variant 1.0
rpsA 1834298 p.Gln253Glu missense_variant 1.0
rpsA 1834306 c.765T>C synonymous_variant 1.0
rpsA 1834307 p.Asp256Gln missense_variant 1.0
rpsA 1834312 c.771G>A synonymous_variant 1.0
rpsA 1834327 c.786G>T synonymous_variant 1.0
rpsA 1834336 c.795C>G synonymous_variant 1.0
rpsA 1834348 c.807T>C synonymous_variant 1.0
rpsA 1834354 c.813G>T synonymous_variant 1.0
rpsA 1834361 c.820T>C synonymous_variant 1.0
rpsA 1834366 c.825A>C synonymous_variant 1.0
rpsA 1834375 c.834G>A synonymous_variant 1.0
rpsA 1834378 c.837T>C synonymous_variant 1.0
rpsA 1834386 c.845_846insT frameshift_variant 1.0
rpsA 1834390 c.849G>C synonymous_variant 1.0
rpsA 1834395 p.Arg285Gln missense_variant 1.0
rpsA 1834397 p.His286Leu missense_variant 1.0
rpsA 1834405 c.864C>A synonymous_variant 1.0
rpsA 1834411 c.870T>C synonymous_variant 1.0
rpsA 1834417 c.876G>C synonymous_variant 1.0
rpsA 1834418 p.Ile293Leu missense_variant 1.0
rpsA 1834423 c.882G>T synonymous_variant 1.0
rpsA 1834427 p.Ile296Val missense_variant 1.0
rpsA 1834451 c.910T>C synonymous_variant 1.0
rpsA 1834459 c.918G>C synonymous_variant 1.0
katG 2156025 c.87C>A synonymous_variant 1.0
clpC1 4039673 c.1032G>C synonymous_variant 0.67
clpC1 4039682 c.1023C>T synonymous_variant 0.92
clpC1 4039685 c.1020C>T synonymous_variant 0.93
clpC1 4039694 c.1011G>C synonymous_variant 1.0
clpC1 4039714 p.Tyr331His missense_variant 1.0
clpC1 4039724 c.981A>G synonymous_variant 1.0
clpC1 4039730 c.975C>G synonymous_variant 1.0
clpC1 4039742 c.963C>T synonymous_variant 1.0
clpC1 4039745 c.960C>T synonymous_variant 1.0
clpC1 4039748 c.957G>C synonymous_variant 1.0
clpC1 4039751 c.954A>G synonymous_variant 1.0
clpC1 4039754 c.951G>C synonymous_variant 1.0
clpC1 4039757 c.948A>G synonymous_variant 1.0
clpC1 4039769 c.936C>G synonymous_variant 1.0
clpC1 4039773 p.Lys311Met missense_variant 1.0
clpC1 4039775 c.930G>C synonymous_variant 1.0
clpC1 4039778 c.927A>G synonymous_variant 1.0
clpC1 4039781 c.924G>C synonymous_variant 1.0
clpC1 4039796 c.909C>T synonymous_variant 1.0
clpC1 4039802 c.903G>T synonymous_variant 1.0
clpC1 4039817 c.888A>T synonymous_variant 1.0
clpC1 4039820 c.885T>G synonymous_variant 1.0
clpC1 4039826 c.879C>G synonymous_variant 1.0
clpC1 4039831 c.874T>C synonymous_variant 1.0
clpC1 4039838 p.Leu289Ile missense_variant 1.0
clpC1 4039847 c.858C>T synonymous_variant 1.0
clpC1 4039850 c.855T>C synonymous_variant 1.0
clpC1 4039865 c.840T>C synonymous_variant 1.0
clpC1 4039871 c.834C>G synonymous_variant 1.0
clpC1 4039875 p.Asn277Arg missense_variant 1.0
clpC1 4039904 c.801A>G synonymous_variant 1.0
clpC1 4039928 c.775_777delAGCinsTCG synonymous_variant 1.0
clpC1 4039934 c.771G>C synonymous_variant 1.0
clpC1 4039943 c.762G>A synonymous_variant 1.0
clpC1 4039946 c.759A>T synonymous_variant 1.0
clpC1 4039949 c.756G>C synonymous_variant 1.0
clpC1 4039952 c.753T>C synonymous_variant 1.0
clpC1 4039958 c.747G>C synonymous_variant 1.0
clpC1 4039967 p.Gln246His missense_variant 1.0
clpC1 4039994 p.Glu237Asp missense_variant 1.0
clpC1 4039997 c.708C>A synonymous_variant 1.0
clpC1 4040001 p.His235Arg missense_variant 1.0
clpC1 4040009 c.696C>A synonymous_variant 1.0
clpC1 4040015 c.690G>C synonymous_variant 1.0
clpC1 4040020 c.685C>T synonymous_variant 1.0
clpC1 4040021 c.684A>C synonymous_variant 1.0
clpC1 4040024 c.681A>G synonymous_variant 1.0
clpC1 4040030 c.675C>G synonymous_variant 1.0
clpC1 4040033 c.672G>C synonymous_variant 1.0
clpC1 4040042 c.663C>T synonymous_variant 1.0
clpC1 4040057 c.648C>T synonymous_variant 1.0
clpC1 4040065 c.640C>T synonymous_variant 1.0
clpC1 4040069 c.636G>C synonymous_variant 1.0
clpC1 4040087 c.618G>C synonymous_variant 1.0
clpC1 4040090 c.615T>A synonymous_variant 1.0
clpC1 4040105 c.600C>G synonymous_variant 1.0
clpC1 4040108 c.597G>C synonymous_variant 1.0
clpC1 4040111 c.594G>A synonymous_variant 1.0
clpC1 4040114 p.Ile197Met missense_variant 1.0