Rv0668 - c.1527C>T
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
7 Sensitive
5 RR-TB
21 HR-TB
14 MDR-TB
1 Pre-XDR-TB
0 XDR-TB
33 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.2;lineage4.9 | 3 |
| lineage4.9;lineage7 | 2 |
| lineage4.3.2;lineage4.9 | 1 |
| lineage1;lineage4.9 | 1 |
| lineage4.9;lineage6.1.3 | 1 |
| lineage4.9 | 25 |
| La1.7;lineage4.9 | 7 |
| lineage4.9;lineage9 | 2 |
| lineage4.8 | 1 |
| La1.7;lineage4.3.4.1 | 1 |
| lineage3.1.2.2 | 1 |
| La2;lineage4.9;lineage9 | 1 |
| lineage3 | 3 |
| lineage4.1.1.3 | 2 |
| lineage2.2.1.1 | 1 |
| lineage4.2;lineage4.8.1;lineage4.9 | 2 |
| lineage2.2.1 | 5 |
| La1.7;M.canetti;lineage4.9 | 2 |
| lineage4.6.3;lineage4.9 | 1 |
| M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | 1 |
| lineage4.9;lineage6.3 | 1 |
| lineage4.3.1;lineage4.9;lineage6 | 1 |
| lineage2.1;lineage4.9 | 1 |
| lineage4.5 | 2 |
| lineage4.3.4.1 | 1 |
| lineage1.2.1.2 | 1 |
| lineage1.1.1 | 1 |
| La1.7.1;La1.7.X-unk4;lineage7 | 1 |
| M.canetti;lineage4.9 | 1 |
| lineage4.6.2.2 | 2 |
| M.canetti;lineage4.2;lineage4.9 | 1 |
| La1.7 | 1 |
| lineage4.6.3;lineage4.9;lineage6.3 | 1 |
| La1.7;lineage4.9;lineage7 | 1 |
| 2 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 81 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR6046295 | HR-TB | lineage4.2;lineage4.9 | None | ERR3445502 | Sensitive | lineage4.9;lineage7 | None | ERR736865 | HR-TB | lineage4.3.2;lineage4.9 | None | ERR4797350 | Sensitive | lineage1;lineage4.9 | None | ERR3445504 | Other | lineage4.9;lineage6.1.3 | None | SRR1172310 | HR-TB | lineage4.9 | None | SRR3675385 | Other | La1.7;lineage4.9 | None | SRR3675492 | Other | La1.7;lineage4.9 | None | SRR3675267 | Other | La1.7;lineage4.9 | None | SRR1174897 | MDR-TB | lineage4.9;lineage9 | None | ERR2514327 | HR-TB | lineage4.8 | None | SRR3675461 | RR-TB | lineage4.9 | None | ERR11465802 | Other | La1.7;lineage4.3.4.1 | None | ERR4798648 | MDR-TB | lineage3.1.2.2 | None | SRR5341470 | MDR-TB | lineage4.9;lineage9 | None | SRR12416840 | MDR-TB | lineage4.9 | None | ERR323053 | MDR-TB | La2;lineage4.9;lineage9 | None | SRR5341267 | Pre-XDR-TB | lineage3 | None | ERR11466044 | Other | lineage4.1.1.3 | None | SRR1184024 | RR-TB | lineage2.2.1.1 | None | SRR1183111 | HR-TB | lineage4.9 | None | SRR6045785 | MDR-TB | lineage4.2;lineage4.8.1;lineage4.9 | None | SRR1183144 | Other | lineage2.2.1 | None | ERR4818110 | Sensitive | lineage4.9 | None | ERR176560 | HR-TB | La1.7;lineage4.9 | None | SRR6046196 | Other | La1.7;M.canetti;lineage4.9 | None | SRR26159047 | Other | lineage4.6.3;lineage4.9 | None | SRR1180226 | HR-TB | lineage4.9 | None | SRR6046397 | Other | M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | None | ERR502524 | HR-TB | lineage4.9;lineage6.3 | None | ERR4816322 | Other | lineage4.9 | None | ERR4828872 | Sensitive | lineage4.2;lineage4.9 | None | SRR3675501 | Other | La1.7;lineage4.9 | None | SRR6046299 | Other | lineage4.3.1;lineage4.9;lineage6 | None | SRR3675473 | Sensitive | lineage4.9 | None | ERR1035138 | MDR-TB | lineage2.1;lineage4.9 | None | SRR16156775 | Other | lineage4.9 | None | SRR6045526 | Other | lineage4.9 | None | ERR4816548 | HR-TB | lineage4.5 | None | ERR11465801 | Other | lineage4.3.4.1 | None | SRR17832802 | HR-TB | lineage3 | None | SRR18002891 | MDR-TB | lineage2.2.1 | None | SRR20969475 | Other | lineage1.2.1.2 | None | ERR4816466 | HR-TB | lineage4.9 | None | SRR14066533 | Sensitive | lineage1.1.1 | None | SRR8217918 | HR-TB | lineage4.9 | None | ERR4812155 | Other | lineage4.9 | None | SRR1180172 | Other | lineage2.2.1 | None | ERR3445501 | HR-TB | La1.7.1;La1.7.X-unk4;lineage7 | None | SRR29096150 | Other | lineage4.9 | None | SRR6045519 | MDR-TB | M.canetti;lineage4.9 | None | ERR3797046 | HR-TB | lineage4.9 | None | SRR3675488 | Other | La1.7;lineage4.9 | None | SRR29097026 | Other | lineage4.9 | None | ERR6359082 | Other | lineage4.9 | None | SRR5341456 | Other | lineage4.9 | None | SRR6046026 | RR-TB | lineage4.2;lineage4.9 | None | ERR4811493 | HR-TB | lineage4.9 | None | ERR212034 | HR-TB | La1.7;lineage4.9 | None | ERR3283055 | HR-TB | lineage4.9 | None | SRR3675505 | Other | La1.7;M.canetti;lineage4.9 | None | SRR29096410 | Other | lineage4.9 | None | ERR11082350 | MDR-TB | lineage4.6.2.2 | None | SRR3675571 | HR-TB | M.canetti;lineage4.2;lineage4.9 | None | ERR4769554 | RR-TB | lineage4.9 | None | ERR12328189 | Sensitive | lineage2.2.1 | None | ERR4830353 | Other | La1.7 | None | SRR3675574 | Other | lineage4.6.3;lineage4.9;lineage6.3 | None | ERR13278785 | MDR-TB | lineage4.6.2.2 | None | ERR2446566 | Other | lineage4.9 | None | ERR752229 | Other | lineage4.5 | None | ERR294266 | HR-TB | lineage4.2;lineage4.8.1;lineage4.9 | None | ERR4798504 | RR-TB | lineage3 | None | SRR3675248 | Other | lineage4.9 | None | SRR11342647 | MDR-TB | lineage4.1.1.3 | None | ERR4831117 | HR-TB | lineage4.9;lineage7 | None | SRR26937107 | MDR-TB | lineage2.2.1 | None | SRR5341422 | HR-TB | La1.7;lineage4.9;lineage7 | None | SRR29097037 | Other | lineage4.9 | None | ERR2514692 | Other | None | ERR987722 | MDR-TB | None |
|---|
