Run ID: ERR12328189
Sample name:
Date: 12-03-2024 16:25:00
Number of reads: 2310762
Percentage reads mapped: 98.57
Strain: lineage2.2.1
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|---|---|
Rifampicin | ||
Isoniazid | ||
Ethambutol | ||
Pyrazinamide | ||
Streptomycin | ||
Fluoroquinolones | ||
Moxifloxacin | ||
Ofloxacin | ||
Levofloxacin | ||
Ciprofloxacin | ||
Aminoglycosides | ||
Amikacin | ||
Capreomycin | ||
Kanamycin | ||
Cycloserine | ||
Ethionamide | ||
Clofazimine | ||
Para-aminosalicylic_acid | ||
Delamanid | ||
Bedaquiline | ||
Linezolid |
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage2 | East-Asian | Beijing | RD105 | 1.0 |
lineage2.2 | East-Asian (Beijing) | Beijing-RD207 | RD105;RD207 | 1.0 |
lineage2.2.1 | East-Asian (Beijing) | Beijing-RD181 | RD105;RD207;RD181 | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
fgd1 | 491742 | c.960T>C | synonymous_variant | 1.0 |
ccsA | 620625 | p.Ile245Met | missense_variant | 1.0 |
rpoC | 763031 | c.-339T>C | upstream_gene_variant | 1.0 |
rpoC | 764896 | c.1527C>T | synonymous_variant | 0.11 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
mmpL5 | 776100 | p.Thr794Ile | missense_variant | 1.0 |
mmpS5 | 779615 | c.-710C>G | upstream_gene_variant | 1.0 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
rplC | 801357 | c.549T>C | synonymous_variant | 0.11 |
Rv1258c | 1406760 | c.580_581insC | frameshift_variant | 1.0 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrs | 1471996 | n.151C>T | non_coding_transcript_exon_variant | 0.17 |
rrs | 1472029 | n.184C>T | non_coding_transcript_exon_variant | 0.14 |
rrs | 1472031 | n.186G>C | non_coding_transcript_exon_variant | 0.12 |
rrs | 1472032 | n.187G>C | non_coding_transcript_exon_variant | 0.12 |
rrs | 1472489 | n.644A>G | non_coding_transcript_exon_variant | 0.24 |
rrl | 1475995 | n.2338G>A | non_coding_transcript_exon_variant | 0.13 |
rrl | 1475997 | n.2340A>G | non_coding_transcript_exon_variant | 0.12 |
rpsA | 1834177 | c.636A>C | synonymous_variant | 1.0 |
rpsA | 1834845 | c.1313_1315delCCG | disruptive_inframe_deletion | 1.0 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
katG | 2154724 | p.Arg463Leu | missense_variant | 1.0 |
PPE35 | 2167926 | p.Leu896Ser | missense_variant | 1.0 |
PPE35 | 2169023 | c.1590G>A | synonymous_variant | 1.0 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
kasA | 2517989 | c.-126T>C | upstream_gene_variant | 0.13 |
kasA | 2518248 | p.Ala45Val | missense_variant | 0.12 |
kasA | 2518255 | c.141A>G | synonymous_variant | 0.12 |
ald | 3086788 | c.-32T>C | upstream_gene_variant | 1.0 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 0.99 |
Rv3236c | 3612813 | p.Thr102Ala | missense_variant | 1.0 |
rpoA | 3877737 | c.771G>C | synonymous_variant | 0.14 |
rpoA | 3877770 | c.738A>G | synonymous_variant | 0.14 |
rpoA | 3877776 | c.732T>C | synonymous_variant | 0.14 |
rpoA | 3877782 | c.726T>C | synonymous_variant | 0.16 |
rpoA | 3877788 | c.720G>A | synonymous_variant | 0.15 |
rpoA | 3878205 | c.303T>C | synonymous_variant | 0.12 |
rpoA | 3878226 | c.282C>G | synonymous_variant | 0.12 |
rpoA | 3878229 | c.279C>G | synonymous_variant | 0.16 |
rpoA | 3878241 | c.267G>A | synonymous_variant | 0.15 |
rpoA | 3878271 | c.237T>C | synonymous_variant | 0.16 |
rpoA | 3878276 | c.232C>T | synonymous_variant | 0.14 |
rpoA | 3878283 | p.Glu75Asp | missense_variant | 0.14 |
rpoA | 3878304 | c.204G>C | synonymous_variant | 0.12 |
rpoA | 3878313 | c.195G>C | synonymous_variant | 0.12 |
rpoA | 3878322 | c.186A>G | synonymous_variant | 0.12 |
clpC1 | 4038790 | c.1915C>T | synonymous_variant | 0.13 |
clpC1 | 4038812 | c.1893T>C | synonymous_variant | 0.16 |
clpC1 | 4038845 | c.1860G>C | synonymous_variant | 0.16 |
clpC1 | 4038848 | c.1857C>T | synonymous_variant | 0.16 |
clpC1 | 4038863 | c.1842G>C | synonymous_variant | 0.17 |
clpC1 | 4038878 | c.1827A>G | synonymous_variant | 0.16 |
clpC1 | 4038881 | c.1824C>T | synonymous_variant | 0.15 |
clpC1 | 4038923 | c.1782A>G | synonymous_variant | 0.11 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embA | 4243460 | c.228C>T | synonymous_variant | 0.99 |
aftB | 4267647 | p.Asp397Gly | missense_variant | 1.0 |
ethA | 4326676 | p.Ser266Arg | missense_variant | 1.0 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |
gid | 4407588 | c.615A>G | synonymous_variant | 1.0 |
gid | 4407595 | p.Val203Gly | missense_variant | 1.0 |
gid | 4407927 | p.Glu92Asp | missense_variant | 1.0 |