Rv3596c - c.1860G>C
Drug resistance types
22 Sensitive
12 RR-TB
86 HR-TB
25 MDR-TB
16 Pre-XDR-TB
0 XDR-TB
122 Other
lineage Counts
| lineage | Count |
|---|---|
| 93 | |
| lineage4.6.1.1 | 1 |
| lineage1.1.3.2 | 1 |
| lineage4.3.4.2.1 | 2 |
| lineage1.1.2 | 3 |
| lineage4.1 | 1 |
| lineage4.1.2.1 | 13 |
| lineage4.8 | 8 |
| lineage4.3.2 | 1 |
| lineage4.1.1 | 2 |
| lineage4.1.3 | 2 |
| lineage6 | 1 |
| lineage4.6.2.2 | 2 |
| lineage6.3.1 | 1 |
| lineage4.4.1.1 | 4 |
| lineage4.9 | 45 |
| lineage4 | 17 |
| lineage4.3.3 | 6 |
| lineage3 | 7 |
| lineage3.1 | 2 |
| lineage2.2.1 | 19 |
| lineage2 | 3 |
| lineage4.1.1.3 | 3 |
| lineage4.3.4.1 | 2 |
| lineage1.1.1 | 1 |
| lineage2.1 | 3 |
| lineage4.5 | 1 |
| lineage1.2.1.2 | 1 |
| lineage2.2 | 2 |
| lineage3.1.3 | 1 |
| lineage9;lineage3.1 | 1 |
| lineage4.9;La3 | 1 |
| lineage2.2.1;La3 | 1 |
| lineage4.2;La1.7 | 1 |
| lineage6.3;lineage2.2.1 | 1 |
| lineage4.1.1.1 | 1 |
| lineage3;lineage2.2.1 | 1 |
| lineage4;lineage3;lineage2.2.1 | 1 |
| lineage4.9;lineage3.1.1 | 1 |
| lineage4.3.4 | 1 |
| lineage4.1.3;lineage4.1.2.1;lineage1.1.2 | 1 |
| lineage3.1.2.1 | 1 |
| lineage4;lineage2 | 1 |
| lineage4.8;La3 | 2 |
| La1.8.1 | 2 |
| lineage4.2.2.2 | 1 |
| lineage4.1.2 | 1 |
| lineage4.2.2.1 | 1 |
| lineage4;lineage1.1 | 1 |
| lineage4.7 | 4 |
| lineage4.1.3;lineage1.1.2 | 1 |
| lineage3;La3 | 1 |
| lineage4.4.1.2 | 1 |
| La1 | 2 |
| lineage4.9;La1.3 | 1 |
| La1.3 | 2 |
| lineage1.2.2.2 | 1 |
| lineage2.2.2 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 283 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR5336148 | Other | None | ERR736874 | HR-TB | None | ERR6358991 | HR-TB | None | ERR702404 | HR-TB | None | ERR6358755 | Other | lineage4.6.1.1 | None | ERR702406 | HR-TB | None | ERR736867 | HR-TB | None | ERR7821123 | Other | lineage1.1.3.2 | None | ERR176549 | Other | lineage4.3.4.2.1 | None | ERR9117709 | HR-TB | None | ERR9117721 | HR-TB | lineage1.1.2 | None | ERR9786440 | Other | lineage4.1 | None | ERR9786421 | Other | lineage4.1.2.1 | None | ERR9786443 | Sensitive | lineage4.8 | None | ERR9117805 | Other | lineage4.3.2 | None | ERR9786569 | Other | lineage4.8 | None | ERR9786601 | Other | lineage4.1.2.1 | None | ERR9786604 | Other | None | ERR9786617 | Other | lineage4.1.1 | None | ERR9786611 | HR-TB | lineage4.1.3 | None | ERR9787165 | Other | lineage6 | None | ERR9786671 | Other | None | ERR9786682 | Other | lineage4.1.2.1 | None | ERR9786642 | Other | lineage4.1.2.1 | None | ERR9786627 | Other | lineage4.1.2.1 | None | ERR9786645 | Other | lineage4.6.2.2 | None | ERR9786694 | Other | lineage4.1.2.1 | None | ERR9787139 | Other | lineage6.3.1 | None | ERR9787197 | Other | None | SRR1169194 | Other | None | SRR1172234 | Other | None | SRR1172728 | MDR-TB | None | SRR1172857 | MDR-TB | None | SRR1172817 | HR-TB | None | SRR1172844 | MDR-TB | lineage4.4.1.1 | None | SRR1172987 | HR-TB | lineage4.9 | None | SRR1172885 | HR-TB | lineage4.9 | None | SRR1172951 | Other | None | SRR1173118 | Other | None | SRR1173153 | HR-TB | None | SRR1173384 | Other | lineage4 | None | SRR1173363 | HR-TB | None | SRR1173218 | Pre-XDR-TB | lineage4.3.3 | None | SRR1173310 | MDR-TB | None | SRR1173330 | Pre-XDR-TB | lineage4 | None | SRR1173484 | Other | lineage4 | None | SRR1173400 | Other | None | SRR1173633 | HR-TB | lineage4.9 | None | SRR1173562 | HR-TB | lineage4 | None | SRR1173515 | HR-TB | lineage4.9 | None | SRR1173788 | Other | None | SRR1173629 | Other | None | SRR1173706 | Other | lineage4.9 | None | SRR1173778 | Other | None | SRR1175074 | MDR-TB | None | SRR1175052 | HR-TB | lineage4.9 | None | SRR1175049 | RR-TB | None | SRR1184308 | Sensitive | lineage4.9 | None | SRR1180179 | Pre-XDR-TB | lineage3 | None | SRR1175090 | Other | lineage4.9 | None | SRR1184294 | HR-TB | None | SRR1184298 | Pre-XDR-TB | lineage4.3.3 | None | SRR1184381 | MDR-TB | None | SRR1184346 | HR-TB | lineage3.1 | None | SRR1184372 | MDR-TB | None | SRR1184312 | HR-TB | lineage2.2.1 | None | SRR1184380 | HR-TB | None | SRR1196768 | MDR-TB | None | SRR1184388 | Other | None | SRR1196546 | HR-TB | None | SRR1196474 | HR-TB | lineage3.1 | None | SRR1196494 | MDR-TB | None | SRR1196545 | HR-TB | lineage4.9 | None | SRR1196566 | HR-TB | None | SRR1196571 | Pre-XDR-TB | lineage4.3.3 | None | SRR1196677 | HR-TB | lineage2 | None | SRR12416840 | MDR-TB | lineage4.9 | None | SRR12142341 | HR-TB | None | SRR13591342 | HR-TB | lineage4.1.1.3 | None | SRR12416824 | HR-TB | None | SRR13583478 | HR-TB | lineage4.3.4.1 | None | SRR13837599 | Sensitive | lineage4.9 | None | SRR13837424 | Sensitive | lineage4.9 | None | SRR14066533 | Sensitive | lineage1.1.1 | None | SRR13837766 | Sensitive | lineage4.9 | None | SRR15368973 | Other | None | SRR17567917 | RR-TB | lineage4.4.1.1 | None | SRR16156697 | MDR-TB | lineage2.2.1 | None | SRR16156832 | RR-TB | None | SRR1710057 | Other | lineage2.1 | None | SRR20969677 | HR-TB | lineage2 | None | SRR18003019 | Other | lineage2.2.1 | None | SRR18213713 | HR-TB | lineage4.5 | None | SRR25827687 | MDR-TB | lineage1.1.2 | None | SRR19304036 | HR-TB | None | SRR20969475 | Other | lineage1.2.1.2 | None | SRR17658565 | Other | lineage3 | None | SRR18910194 | HR-TB | lineage2.2 | None | SRR18913742 | Sensitive | lineage3.1.3 | None | SRR19303884 | HR-TB | None | SRR25827682 | Other | None | SRR25827418 | Pre-XDR-TB | lineage9;lineage3.1 | None | ERR11081257 | Other | lineage4.8 | None | DRR261078 | Sensitive | lineage4.3.3 | None | SRR21677886 | Sensitive | lineage4.9 | None | SRR22424787 | Sensitive | lineage4.9 | None | ERR11068570 | Other | lineage4 | None | SRR21732980 | Other | lineage4.3.3 | None | ERR11081258 | Other | lineage4.8 | None | SRR26399973 | Other | lineage4.9;La3 | None | SRR26937071 | MDR-TB | lineage2.2.1;La3 | None | SRR26937107 | MDR-TB | lineage2.2.1 | None | ERR12328189 | Sensitive | lineage2.2.1 | None | SRR26159043 | Other | lineage4.9 | None | ERR176793 | Other | lineage4.1.1 | None | SRR23961559 | Other | lineage4.2;La1.7 | None | SRR28119811 | Other | lineage6.3;lineage2.2.1 | None | SRR25827507 | MDR-TB | lineage4.1.1.1 | None | SRR25827497 | Pre-XDR-TB | lineage3;lineage2.2.1 | None | SRR25827605 | Pre-XDR-TB | lineage4;lineage3;lineage2.2.1 | None | ERR4815604 | HR-TB | None | ERR171142 | Other | lineage4.9;lineage3.1.1 | None | ERR4814352 | HR-TB | lineage2.2.1 | None | ERR161039 | Sensitive | lineage4.3.4 | None | SRR3675488 | HR-TB | None | SRR3416776 | Other | lineage2.1 | None | ERR181744 | HR-TB | None | SRR3675221 | HR-TB | None | SRR3675465 | HR-TB | None | ERR4814683 | Sensitive | lineage4.1.3;lineage4.1.2.1;lineage1.1.2 | None | SRR3675222 | Other | None | SRR3675232 | Other | lineage4.1.2.1 | None | SRR3675236 | HR-TB | None | SRR3675501 | HR-TB | None | SRR3675311 | Other | None | ERR4815022 | Other | lineage3.1.2.1 | None | ERR4815752 | Other | lineage4.9 | None | ERR2229542 | Other | lineage4.8 | None | ERR4816322 | Other | lineage4.9 | None | ERR4816999 | Other | None | ERR4817060 | RR-TB | None | ERR2027263 | Other | lineage4 | None | ERR4817037 | Other | lineage4.9 | None | ERR4816585 | Other | lineage2.2 | None | ERR212123 | Other | None | SRR3675572 | Other | None | SRR3675574 | HR-TB | None | SRR3675571 | HR-TB | None | SRR3742665 | HR-TB | None | ERR4816559 | MDR-TB | lineage4.4.1.1 | None | ERR4816852 | Other | lineage4.9 | None | ERR502912 | Other | lineage2.2.1 | None | ERR4816762 | Other | lineage4;lineage2 | None | ERR4815815 | Sensitive | lineage4 | None | ERR4817893 | Other | lineage4.8;La3 | None | ERR4818646 | Sensitive | lineage4.1.2.1 | None | ERR4817735 | Other | lineage4.8 | None | ERR4818021 | Other | La1.8.1 | None | ERR553132 | MDR-TB | lineage4.1.2.1 | None | ERR4817896 | HR-TB | lineage2.2.1 | None | ERR2513470 | Other | lineage4.2.2.2 | None | ERR4818394 | Other | lineage4.9 | None | ERR234659 | HR-TB | None | ERR2513229 | MDR-TB | lineage2.2.1 | None | ERR4818347 | Other | lineage4.1.2 | None | ERR4817547 | Other | lineage4.2.2.1 | None | ERR4818561 | HR-TB | lineage4 | None | SRR5007188 | Other | lineage4 | None | ERR4819322 | Other | lineage4;lineage1.1 | None | ERR4818615 | Other | None | ERR4820854 | Other | lineage4.1.2.1 | None | ERR2514692 | Other | None | ERR4819546 | HR-TB | lineage3 | None | ERR4819622 | Other | lineage4.1.2.1 | None | ERR4819641 | HR-TB | lineage4.6.2.2 | None | ERR4819781 | Other | lineage2.2.1 | None | SRR5341302 | HR-TB | None | ERR4821143 | RR-TB | lineage4.9 | None | SRR5341333 | HR-TB | None | SRR6045450 | Other | lineage4.9 | None | ERR2514821 | Other | lineage2.2.1 | None | ERR4819932 | Other | lineage4.7 | None | SRR6045795 | HR-TB | lineage2.2.1 | None | SRR6045526 | HR-TB | None | SRR6046117 | RR-TB | lineage4.9 | None | ERR4822101 | Sensitive | lineage4.1.3;lineage1.1.2 | None | ERR4821704 | MDR-TB | lineage4.3.3 | None | SRR6045603 | RR-TB | lineage4.1.1.3 | None | ERR4821288 | Other | lineage4.7 | None | SRR6045577 | Sensitive | lineage4.9 | None | SRR6045399 | Other | None | SRR6044790 | HR-TB | None | SRR6044838 | Other | lineage4.9 | None | SRR6044855 | Other | lineage4.9 | None | SRR6044952 | RR-TB | lineage4.9 | None | SRR6045327 | HR-TB | None | SRR6045359 | Sensitive | lineage4.9 | None | SRR6046066 | HR-TB | None | SRR6046250 | Other | lineage4.9 | None | SRR6046225 | HR-TB | None | SRR6046305 | Other | lineage4.9 | None | SRR6046362 | HR-TB | None | ERR4830353 | Other | None | SRR6046397 | Other | None | SRR6046540 | HR-TB | None | SRR6046460 | HR-TB | None | SRR6046521 | Other | lineage4.4.1.1 | None | ERR502470 | RR-TB | lineage4.9 | None | SRR6458423 | HR-TB | lineage2.2.1 | None | ERR4832002 | Pre-XDR-TB | lineage2.1 | None | ERR11466146 | Other | lineage4.3.4.2.1 | None | ERR4831529 | Pre-XDR-TB | lineage2.2.1 | None | ERR294266 | HR-TB | None | SRR6785263 | Sensitive | lineage2.2.1 | None | SRR6789626 | Other | None | SRR7131023 | Other | lineage4.1.2.1 | None | ERR502532 | HR-TB | None | ERR502908 | HR-TB | lineage2.2.1 | None | ERR11466174 | Other | lineage4.8 | None | SRR7496517 | Other | None | SRR7496523 | Other | lineage4.7 | None | SRR7496509 | Other | None | ERR067699 | HR-TB | lineage4 | None | SRR7585435 | Other | lineage4.9 | None | ERR11466499 | Other | lineage4.3.4.1 | None | SRR7535086 | Other | None | SRR7645928 | RR-TB | lineage4.7 | None | ERR323043 | HR-TB | None | ERR323108 | HR-TB | lineage4 | None | ERR067712 | HR-TB | lineage4 | None | ERR133825 | Sensitive | lineage4 | None | ERR1034634 | HR-TB | None | ERR1035157 | Other | lineage4.9 | None | ERR11465024 | Other | lineage4.1.1.3 | None | ERR108125 | Pre-XDR-TB | lineage4.9 | None | ERR11049020 | Other | lineage4.8 | None | ERR1023302 | MDR-TB | lineage3;La3 | None | ERR126597 | MDR-TB | lineage4.4.1.2 | None | ERR3283043 | Other | lineage4.9 | None | ERR3283013 | MDR-TB | lineage4 | None | ERR3283027 | HR-TB | None | ERR3283008 | Other | lineage4.9 | None | ERR3283010 | Other | La1 | None | ERR3283025 | HR-TB | None | ERR3283030 | HR-TB | lineage4.9 | None | ERR3283040 | HR-TB | None | ERR3797058 | Other | lineage4.9 | None | ERR3283036 | HR-TB | None | ERR3797015 | HR-TB | None | ERR3797062 | RR-TB | lineage4.9 | None | ERR3797060 | Other | La1.8.1 | None | ERR3797086 | Other | lineage4.9 | None | ERR3797069 | Other | None | ERR3797071 | Other | lineage4.9 | None | ERR3797080 | HR-TB | lineage4.9 | None | ERR3804169 | HR-TB | lineage4.1.3 | None | ERR3804155 | Other | lineage4.1.2.1 | None | ERR4596902 | HR-TB | lineage3 | None | ERR4407463 | HR-TB | None | ERR400529 | Other | lineage3 | None | ERR4769493 | Pre-XDR-TB | lineage4.9;La1.3 | None | ERR4596910 | Sensitive | lineage4 | None | ERR4769433 | Pre-XDR-TB | lineage4.9 | None | ERR4769436 | Other | La1.3 | None | ERR473332 | Other | lineage4 | None | ERR4769419 | Other | lineage4.9 | None | ERR4769495 | Other | La1.3 | None | ERR4797588 | MDR-TB | lineage3 | None | ERR4797054 | Pre-XDR-TB | lineage2 | None | ERR4797201 | Other | lineage1.2.2.2 | None | ERR4798493 | MDR-TB | lineage2.2.1 | None | ERR4798139 | Sensitive | lineage1.1.2 | None | ERR4798262 | HR-TB | La1 | None | ERR4798823 | HR-TB | lineage4 | None | ERR12015083 | Other | lineage4.8;La3 | None | ERR4800341 | Other | lineage3 | None | ERR4799478 | Pre-XDR-TB | lineage2.2.1 | None | ERR4811022 | HR-TB | None | ERR4808964 | RR-TB | lineage2.2.1 | None | ERR4809333 | Pre-XDR-TB | lineage2.2.2 | None | ERR4810741 | HR-TB | None | ERR4811105 | HR-TB | None | ERR4811142 | MDR-TB | None |
|---|
