Rv3596c - c.1860G>C
Drug resistance types
26 Sensitive
11 RR-TB
49 HR-TB
22 MDR-TB
9 Pre-XDR-TB
2 XDR-TB
181 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage1.2.1.2 | 1 |
| lineage3 | 6 |
| lineage4.9 | 71 |
| lineage4.8 | 7 |
| M.canetti;lineage2.1;lineage4.9 | 2 |
| lineage2.1;lineage6.3 | 2 |
| La3 | 2 |
| 25 | |
| lineage2.1;lineage4.9 | 14 |
| La1.7;lineage4.9 | 9 |
| La3;lineage4.9 | 4 |
| lineage2.1 | 5 |
| lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 | 1 |
| lineage4.4.1.1 | 2 |
| lineage3.1 | 1 |
| lineage4.8.1;lineage4.9;lineage6.1.3;lineage6.3 | 1 |
| La1.7;lineage4.2 | 1 |
| lineage2.1;lineage4.9;lineage6.3 | 10 |
| lineage4.9;lineage6.3 | 8 |
| La1.7;M.canetti;lineage4.9 | 4 |
| lineage4.2;lineage4.9 | 3 |
| lineage2.2.2;lineage4 | 1 |
| lineage4.3.3 | 4 |
| lineage4.1.1.1 | 4 |
| lineage6.1.3 | 1 |
| La1.2.BCG;La1.8.1 | 1 |
| lineage3.1;lineage9 | 1 |
| lineage2.2.1 | 20 |
| M.canetti;lineage4.2;lineage4.9 | 1 |
| lineage4.1.2.1 | 13 |
| M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | 1 |
| La3;lineage2.2.1 | 2 |
| La3;lineage2.1;lineage4.9 | 2 |
| lineage1.1.2 | 2 |
| lineage4.1.1.3 | 2 |
| lineage2.2 | 1 |
| lineage4.3.4.2.1 | 2 |
| lineage4.6.3;lineage4.9;lineage6.3 | 1 |
| lineage4.3.2.1 | 2 |
| lineage4.3.2 | 1 |
| lineage4.1.3 | 2 |
| lineage2.2.1;lineage3;lineage4 | 1 |
| lineage4.3.4.1 | 2 |
| La1;lineage4.9 | 1 |
| La3;lineage4.8 | 2 |
| lineage4.2;lineage4.8.1;lineage4.9 | 2 |
| lineage4.6.2.2 | 1 |
| La1.2.BCG | 1 |
| lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | 1 |
| lineage1.1.1 | 1 |
| lineage4.7 | 3 |
| lineage4 | 3 |
| La3;lineage2.1;lineage4.9;lineage6.3 | 3 |
| La3;lineage2.1;lineage6.3 | 1 |
| lineage4.6.1.1 | 1 |
| La3;lineage4.2;lineage4.6.3;lineage4.9;lineage9 | 2 |
| lineage6.3.1 | 1 |
| lineage2.2.2 | 2 |
| lineage4.2.1 | 1 |
| La3;lineage2 | 1 |
| lineage2.2;lineage4 | 1 |
| lineage4.2.2.2 | 2 |
| La3;lineage4.3.4 | 1 |
| La1;lineage2;lineage4.9 | 1 |
| lineage1.2.2.2 | 2 |
| M.canetti;lineage4.9 | 1 |
| lineage1.1.2;lineage4.1.2.1;lineage4.1.3 | 1 |
| La1.8.1 | 1 |
| lineage4.4.1.2 | 1 |
| M.canetti;lineage2.1;lineage6.3 | 1 |
| lineage3.1.3 | 1 |
| M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | 1 |
| lineage4.1 | 1 |
| lineage4.1.2 | 1 |
| M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage6.2.3 | 1 |
| La3;M.canetti;lineage2.2.1 | 1 |
| lineage3.1.2.1 | 1 |
| La3;lineage1.1.2 | 1 |
| La3;lineage3 | 1 |
| lineage2.2.1;lineage3 | 1 |
| lineage2.2.1;lineage6.3 | 1 |
| La1.3 | 1 |
| lineage3.1.1 | 1 |
| lineage2.1;lineage4.3.2;lineage4.9 | 1 |
| lineage1.1.3.2 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 300 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR20969475 | Other | lineage1.2.1.2 | None | ERR4596902 | MDR-TB | lineage3 | None | SRR1165699 | Other | lineage4.9 | None | ERR11081258 | Other | lineage4.8 | None | ERR4800341 | Other | lineage3 | None | ERR736859 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR5336148 | Other | lineage2.1;lineage6.3 | None | SRR1172817 | Other | La3 | None | ERR473332 | Other | lineage4.9 | None | SRR7496509 | Other | None | ERR736867 | Other | lineage2.1;lineage4.9 | None | ERR3797086 | Sensitive | lineage4.9 | None | SRR3675488 | Other | La1.7;lineage4.9 | None | SRR29017461 | Other | La3;lineage4.9 | None | ERR4797054 | Pre-XDR-TB | lineage2.1 | None | ERR1334034 | Other | lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 | None | ERR323043 | Other | lineage2.1;lineage4.9 | None | ERR4816559 | MDR-TB | lineage4.4.1.1 | None | ERR502470 | RR-TB | lineage4.9 | None | SRR1184346 | HR-TB | lineage3.1 | None | ERR6358991 | HR-TB | lineage4.8.1;lineage4.9;lineage6.1.3;lineage6.3 | None | SRR23961559 | Other | La1.7;lineage4.2 | None | SRR3675490 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR6046225 | Other | lineage4.9;lineage6.3 | None | SRR6045887 | Other | La1.7;M.canetti;lineage4.9 | None | ERR4815815 | Sensitive | lineage4.9 | None | SRR6046026 | RR-TB | lineage4.2;lineage4.9 | None | SRR1184381 | MDR-TB | None | SRR29093105 | Other | lineage2.2.2;lineage4 | None | ERR234659 | Other | None | SRR28119756 | Other | lineage4.9;lineage6.3 | None | ERR9786604 | Other | None | ERR4815752 | Other | lineage4.9 | None | SRR3675572 | Other | None | SRR6045380 | Other | lineage2.1;lineage4.9 | None | SRR3675457 | Other | lineage4.9 | None | ERR13265528 | Other | lineage4.9;lineage6.3 | None | SRR21732980 | Other | lineage4.3.3 | None | SRR3675505 | Other | La1.7;M.canetti;lineage4.9 | None | SRR25827507 | MDR-TB | lineage4.1.1.1 | None | SRR6044855 | Sensitive | lineage4.9 | None | ERR3283036 | Other | lineage2.1;lineage4.9 | None | ERR4407463 | HR-TB | None | ERR9787165 | Other | lineage6.1.3 | None | SRR1172951 | Other | lineage4.9 | None | SRR1173778 | Other | lineage4.9 | None | ERR4816762 | Sensitive | lineage4.9 | None | ERR4818021 | Other | La1.2.BCG;La1.8.1 | None | SRR25827418 | XDR-TB | lineage3.1;lineage9 | None | ERR3283040 | HR-TB | lineage4.9 | None | SRR3675508 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR6045359 | Sensitive | lineage4.9 | None | ERR4808964 | RR-TB | lineage2.2.1 | None | SRR3675275 | Other | lineage4.9 | None | SRR3675571 | HR-TB | M.canetti;lineage4.2;lineage4.9 | None | ERR4818646 | Sensitive | lineage4.1.2.1 | None | SRR3742665 | HR-TB | M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | None | SRR28119717 | Other | lineage4.9;lineage6.3 | None | ERR736871 | HR-TB | lineage2.1;lineage4.9;lineage6.3 | None | SRR29055629 | MDR-TB | La3;lineage2.2.1 | None | SRR3675214 | Other | lineage4.9 | None | ERR736874 | Other | La3;lineage2.1;lineage4.9 | None | SRR25827687 | MDR-TB | lineage1.1.2 | None | ERR4811022 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR19303884 | Other | lineage2.1;lineage6.3 | None | SRR12708413 | HR-TB | lineage4.1.1.3 | None | SRR7496517 | Other | None | SRR1196677 | Other | lineage2.2 | None | SRR3675529 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR12708418 | HR-TB | lineage2.2.1 | None | ERR11466146 | Other | lineage4.3.4.2.1 | None | SRR3675574 | Other | lineage4.6.3;lineage4.9;lineage6.3 | None | SRR12708407 | HR-TB | lineage4.3.2.1 | None | SRR3675267 | Other | La1.7;lineage4.9 | None | ERR4815604 | Other | None | ERR1035157 | Other | lineage4.9 | None | SRR6046066 | Other | lineage4.9 | None | SRR3675216 | Other | lineage2.1;lineage4.9 | None | ERR4769433 | RR-TB | lineage4.9 | None | SRR6789626 | Other | None | SRR6046783 | Other | La1.7;M.canetti;lineage4.9 | None | ERR4816999 | Other | None | ERR4816852 | Other | lineage4.9 | None | ERR4797588 | MDR-TB | lineage3 | None | ERR161037 | Other | lineage4.9 | None | ERR1063846 | HR-TB | lineage4.9 | None | SRR6785263 | Sensitive | lineage2.2.1 | None | ERR9117805 | Other | lineage4.3.2 | None | SRR7535086 | Other | None | ERR3804169 | HR-TB | lineage4.1.3 | None | SRR1172885 | HR-TB | lineage4.9 | None | ERR4596910 | Sensitive | lineage4.9 | None | SRR25827605 | Pre-XDR-TB | lineage2.2.1;lineage3;lineage4 | None | ERR4769493 | Other | lineage4.9 | None | SRR13583478 | HR-TB | lineage4.3.4.1 | None | ERR702406 | Other | lineage2.1 | None | ERR133825 | HR-TB | La1;lineage4.9 | None | ERR4819546 | HR-TB | lineage3 | None | ERR9786611 | HR-TB | lineage4.1.3 | None | SRR3675549 | Other | lineage4.9 | None | ERR11466499 | Other | lineage4.3.4.1 | None | SRR21677886 | Sensitive | lineage4.9 | None | ERR702404 | HR-TB | lineage2.1;lineage4.9;lineage6.3 | None | ERR12015083 | Other | La3;lineage4.8 | None | SRR26937107 | MDR-TB | lineage2.2.1 | None | ERR1034634 | HR-TB | lineage4.9 | None | ERR2229542 | Other | lineage4.8 | None | ERR5311094 | HR-TB | lineage4.9 | None | ERR4798493 | MDR-TB | lineage2.2.1 | None | SRR6045785 | MDR-TB | lineage4.2;lineage4.8.1;lineage4.9 | None | ERR9786645 | Other | lineage4.6.2.2 | None | SRR1184294 | Other | lineage4.9 | None | SRR29097066 | Sensitive | lineage4.9 | None | ERR4798262 | HR-TB | La1.2.BCG | None | SRR7131023 | Other | lineage4.1.2.1 | None | SRR1238557 | Other | lineage4.9 | None | SRR12416824 | HR-TB | lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | None | SRR14066533 | Sensitive | lineage1.1.1 | None | SRR1735598 | RR-TB | lineage4.9 | None | SRR6046196 | Other | La1.7;M.canetti;lineage4.9 | None | SRR6789621 | Other | lineage4.9 | None | ERR4817060 | Other | None | SRR8552928 | HR-TB | lineage2.1;lineage4.9;lineage6.3 | None | ERR4814352 | Other | lineage2.2.1 | None | ERR502908 | HR-TB | lineage2.2.1 | None | ERR9786601 | Other | lineage4.1.2.1 | None | ERR9786671 | Other | None | SRR12142341 | HR-TB | lineage2.1 | None | ERR9786421 | Other | lineage4.1.2.1 | None | ERR2513229 | MDR-TB | lineage2.2.1 | None | SRR7496523 | Other | lineage4.7 | None | SRR12708396 | MDR-TB | lineage4.3.2.1 | None | SRR1165667 | Other | lineage4.9;lineage6.3 | None | SRR5341333 | Other | lineage2.1;lineage4.9 | None | SRR1196566 | Other | lineage4.9 | None | SRR3675232 | Other | lineage4.1.2.1 | None | SRR29096541 | Other | lineage4.9 | None | ERR4798823 | HR-TB | lineage4 | None | ERR4828872 | Sensitive | lineage4.2;lineage4.9 | None | SRR1196768 | MDR-TB | None | SRR19304036 | Other | La3;lineage2.1;lineage4.9;lineage6.3 | None | ERR181744 | HR-TB | La3;lineage4.9 | None | ERR4818394 | Sensitive | lineage4.9 | None | SRR6046540 | Other | lineage2.1;lineage4.9 | None | ERR4810741 | HR-TB | La3;lineage2.1;lineage6.3 | None | SRR3675385 | Other | La1.7;lineage4.9 | None | ERR6358755 | Other | lineage4.6.1.1 | None | SRR18213713 | HR-TB | None | SRR6046460 | MDR-TB | La3;lineage4.2;lineage4.6.3;lineage4.9;lineage9 | None | SRR1173788 | Sensitive | lineage4.9 | None | ERR9787139 | Other | lineage6.3.1 | None | ERR3283019 | Other | lineage2.1;lineage4.9 | None | ERR4809333 | Pre-XDR-TB | lineage2.2.2 | None | SRR1710057 | Other | lineage2.1 | None | SRR1238559 | Other | lineage4.9 | None | ERR867524 | Pre-XDR-TB | lineage4.2.1 | None | SRR20969677 | HR-TB | La3;lineage2 | None | ERR4811075 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR1184388 | Other | lineage2.1;lineage4.9 | None | ERR4817896 | HR-TB | lineage2.2.1 | None | SRR1184298 | Pre-XDR-TB | lineage4.3.3 | None | ERR9786627 | Other | lineage4.1.2.1 | None | SRR1169194 | Other | lineage4.9 | None | SRR6046362 | MDR-TB | La3;lineage4.2;lineage4.6.3;lineage4.9;lineage9 | None | ERR4811142 | RR-TB | La3;lineage2.1;lineage4.9;lineage6.3 | None | ERR323108 | HR-TB | La1.7;lineage4.9 | None | SRR6044790 | Other | lineage2.1;lineage4.9 | None | SRR16156832 | RR-TB | lineage2.2;lineage4 | None | ERR108125 | RR-TB | lineage4.9 | None | SRR1184312 | Other | lineage2.2.1 | None | ERR4811105 | HR-TB | La3;lineage2.1;lineage4.9;lineage6.3 | None | SRR6045526 | Other | lineage4.9 | None | SRR18910194 | HR-TB | lineage2.2.2 | None | ERR2027263 | Other | lineage4 | None | SRR6046521 | Other | lineage4.4.1.1 | None | SRR29016901 | Other | La3;lineage4.9 | None | ERR2513470 | Other | lineage4.2.2.2 | None | SRR29051077 | Other | lineage4.9 | None | ERR161039 | HR-TB | La3;lineage4.3.4 | None | ERR216938 | HR-TB | La1.7;lineage4.9 | None | ERR067699 | Sensitive | La1;lineage2;lineage4.9 | None | ERR294266 | HR-TB | lineage4.2;lineage4.8.1;lineage4.9 | None | SRR3675248 | Other | lineage4.9 | None | SRR12708411 | HR-TB | lineage1.2.2.2 | None | SRR1184380 | Other | lineage2.1;lineage4.9 | None | ERR4820854 | Other | lineage4.1.2.1 | None | ERR4811311 | Other | lineage2.1;lineage4.9;lineage6.3 | None | ERR176793 | Other | lineage4.1.1.1 | None | SRR3675236 | Other | None | SRR6045399 | Other | M.canetti;lineage4.9 | None | ERR11049020 | Other | lineage4.8 | None | ERR4797201 | Other | lineage1.2.2.2 | None | SRR1172728 | RR-TB | La3 | None | SRR28119777 | Other | lineage4.9 | None | ERR4798139 | RR-TB | lineage1.1.2 | None | ERR4814683 | Sensitive | lineage1.1.2;lineage4.1.2.1;lineage4.1.3 | None | ERR9117709 | Other | None | SRR7236330 | Other | La1.8.1 | None | ERR126597 | HR-TB | lineage4.4.1.2 | None | SRR1173400 | Other | lineage4.9 | None | SRR3675581 | Other | lineage2.1;lineage4.9 | None | SRR1172234 | Other | lineage4.9 | None | SRR12416840 | MDR-TB | lineage4.9 | None | ERR13265748 | Other | lineage4.9;lineage6.3 | None | SRR26937071 | MDR-TB | La3;lineage2.2.1 | None | SRR5341302 | Other | La3;lineage2.1;lineage4.9 | None | ERR502532 | Other | M.canetti;lineage2.1;lineage6.3 | None | SRR29050859 | Other | lineage4.9 | None | SRR3675311 | Other | lineage4.9 | None | SRR1238558 | Other | lineage4.9 | None | SRR7496472 | Other | lineage4.9 | None | ERR502912 | Other | lineage2.2.1 | None | ERR3804155 | Other | lineage4.1.2.1 | None | ERR3797070 | Other | lineage4.9 | None | ERR3283025 | MDR-TB | La1.7;lineage4.9 | None | ERR9786642 | Other | lineage4.1.2.1 | None | SRR3675221 | Other | lineage4.9 | None | SRR28044634 | Other | lineage3 | None | ERR2514692 | Other | None | SRR25827682 | Other | None | SRR1172857 | Other | None | ERR9787197 | Other | None | SRR28119805 | Other | lineage4.9 | None | SRR29126968 | Sensitive | lineage4.7 | None | ERR11465024 | Other | lineage4.1.1.3 | None | SRR6046295 | HR-TB | lineage4.2;lineage4.9 | None | SRR21690574 | Other | lineage4.1.2.1 | None | ERR176549 | Other | lineage4.3.4.2.1 | None | ERR4819781 | Other | lineage2.2.1 | None | SRR1184372 | MDR-TB | None | SRR18913742 | Sensitive | lineage3.1.3 | None | SRR6046397 | Other | M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | None | SRR1173633 | Other | lineage4.9 | None | ERR9786440 | Other | lineage4.1 | None | SRR1173363 | Other | None | SRR6044838 | Other | lineage4.9 | None | SRR6045795 | Sensitive | lineage2.2.1 | None | ERR4818347 | Other | lineage4.1.2 | None | ERR4818615 | Sensitive | None | SRR3675465 | Other | lineage4.9;lineage6.3 | None | SRR29051093 | Other | lineage4.9 | None | SRR6045242 | Other | lineage2.1;lineage4.9 | None | SRR29051043 | Other | lineage4.3.3 | None | ERR9786694 | Other | lineage4.1.2.1 | None | ERR4816322 | Other | lineage4.9 | None | ERR3283027 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR1175052 | HR-TB | lineage4.9 | None | ERR9786569 | Other | lineage4.8 | None | SRR1196583 | Other | lineage4.9 | None | ERR11252599 | Other | M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage6.2.3 | None | SRR12708414 | HR-TB | lineage2.2.1 | None | ERR4817893 | Other | La3;lineage4.8 | None | SRR29772570 | Other | lineage4.9 | None | SRR3742657 | Pre-XDR-TB | La3;M.canetti;lineage2.2.1 | None | SRR1175074 | Other | None | SRR1173629 | Other | lineage2.1;lineage4.9 | None | ERR4817735 | Other | lineage4.8 | None | ERR3797069 | Other | lineage4.9 | None | SRR18003019 | Other | lineage2.2.1 | None | SRR26399973 | Other | La3;lineage4.9 | None | ERR4819932 | Other | lineage4.7 | None | SRR1173355 | Other | lineage4.9 | None | ERR9786682 | Other | lineage4.1.2.1 | None | ERR4815022 | Other | lineage3.1.2.1 | None | ERR12328189 | Sensitive | lineage2.2.1 | None | SRR3416776 | Other | lineage2.1 | None | SRR3675501 | Other | La1.7;lineage4.9 | None | ERR9117721 | HR-TB | La3;lineage1.1.2 | None | SRR3675492 | Other | La1.7;lineage4.9 | None | ERR13267017 | Pre-XDR-TB | lineage2.2.1 | None | SRR11342687 | RR-TB | lineage4.2.2.2 | None | ERR1023302 | MDR-TB | La3;lineage3 | None | SRR11342642 | MDR-TB | lineage4.1.1.1 | None | SRR17658565 | Pre-XDR-TB | lineage3 | None | SRR14801759 | HR-TB | La1.7;lineage4.9 | None | ERR067712 | Sensitive | lineage4.9 | None | SRR3675467 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR15368973 | Other | lineage4.9 | None | SRR25827497 | XDR-TB | lineage2.2.1;lineage3 | None | ERR4818561 | Sensitive | lineage4.9 | None | ERR3283030 | HR-TB | lineage4.9 | None | ERR3797015 | HR-TB | lineage4.9 | None | SRR28119811 | Other | lineage2.2.1;lineage6.3 | None | SRR26159043 | Other | lineage4.9 | None | ERR4799478 | Pre-XDR-TB | lineage2.2.1 | None | ERR9786617 | Other | lineage4.1.1.1 | None | SRR22424787 | Sensitive | lineage4.9 | None | ERR4769495 | Other | La1.3 | None | SRR1196474 | Other | lineage3.1.1 | None | SRR1196546 | Other | lineage4.9 | None | ERR553132 | MDR-TB | lineage4.1.2.1 | None | SRR6045327 | Other | lineage2.1;lineage4.3.2;lineage4.9 | None | SRR12708392 | Other | lineage2.2.1 | None | SRR6458423 | HR-TB | lineage2.2.1 | None | ERR11466174 | Other | lineage4.8 | None | ERR7821123 | Other | lineage1.1.3.2 | None | DRR261078 | Sensitive | lineage4.3.3 | None | SRR3675524 | Other | lineage4.9;lineage6.3 | None | ERR9786443 | Sensitive | lineage4.8 | None | ERR3283044 | Other | lineage4 | None |
|---|
