TB-Profiler result

Run: ERR11081257

Summary

Run ID: ERR11081257

Sample name:

Date: 08-04-2023 13:27:55

Number of reads: 1850124

Percentage reads mapped: 87.72

Strain: lineage4.8

Drug-resistance: Other


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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
lineage4 Euro-American LAM;T;S;X;H None 1.0
lineage4.8 Euro-American (mainly T) T1;T2;T3;T5 RD219 0.98
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
rrs 1472307 n.462C>T non_coding_transcript_exon_variant 0.37 streptomycin
embB 4247448 p.His312Arg missense_variant 0.14 ethambutol
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
gyrA 7362 p.Glu21Gln missense_variant 1.0
fgd1 491151 c.369G>A synonymous_variant 0.14
fgd1 491191 p.Gly137Arg missense_variant 0.14
fgd1 491194 c.412_414delCTAinsTTG synonymous_variant 0.14
fgd1 491202 c.420G>C synonymous_variant 0.16
fgd1 491203 p.Gln141Glu missense_variant 0.16
fgd1 491212 p.Ser144Arg missense_variant 0.14
fgd1 491217 c.435T>C synonymous_variant 0.12
fgd1 491302 p.Ile174Val missense_variant 0.13
fgd1 491307 c.525C>G synonymous_variant 0.14
fgd1 491313 c.531C>T synonymous_variant 0.13
fgd1 491319 c.537G>C synonymous_variant 0.13
fgd1 491337 c.555C>G synonymous_variant 0.14
ccsA 620385 c.495G>C synonymous_variant 0.13
rpoB 760091 c.285G>C synonymous_variant 0.14
rpoB 760112 c.306T>C synonymous_variant 0.17
rpoB 760118 c.312T>G synonymous_variant 0.17
rpoB 760121 c.315T>C synonymous_variant 0.16
rpoB 760130 p.Asp108Glu missense_variant 0.17
rpoB 760139 c.333A>G synonymous_variant 0.19
rpoB 760142 c.336C>G synonymous_variant 0.18
rpoB 760181 c.375T>C synonymous_variant 0.27
rpoB 760184 c.378A>G synonymous_variant 0.27
rpoB 760196 c.390C>G synonymous_variant 0.29
rpoB 760223 c.417T>C synonymous_variant 0.25
rpoB 760235 c.429T>C synonymous_variant 0.28
rpoB 760283 c.477G>C synonymous_variant 0.44
rpoB 760298 c.492G>C synonymous_variant 0.4
rpoB 760307 c.501T>C synonymous_variant 0.41
rpoB 760310 c.504G>C synonymous_variant 0.4
rpoB 760328 c.522G>C synonymous_variant 0.43
rpoB 760331 c.525G>C synonymous_variant 0.42
rpoB 760340 c.534G>T synonymous_variant 0.42
rpoB 760361 c.555T>C synonymous_variant 0.33
rpoB 760370 c.564C>G synonymous_variant 0.27
rpoB 760376 p.Asp190Glu missense_variant 0.24
rpoB 760380 p.Thr192Leu missense_variant 0.21
rpoB 760406 c.600G>C synonymous_variant 0.34
rpoB 760412 c.606C>G synonymous_variant 0.36
rpoB 760424 c.618C>G synonymous_variant 0.38
rpoB 760430 c.624T>C synonymous_variant 0.31
rpoB 760475 c.669A>G synonymous_variant 0.3
rpoB 760481 c.675G>C synonymous_variant 0.26
rpoB 760484 c.678A>G synonymous_variant 0.25
rpoB 760724 c.918T>C synonymous_variant 0.13
rpoB 760931 c.1125C>G synonymous_variant 0.13
rpoB 760934 c.1128C>T synonymous_variant 0.16
rpoB 760946 c.1140A>G synonymous_variant 0.21
rpoB 760982 c.1176G>C synonymous_variant 0.32
rpoB 760985 c.1179G>C synonymous_variant 0.33
rpoB 760991 c.1185G>C synonymous_variant 0.3
rpoB 761006 c.1200C>G synonymous_variant 0.36
rpoB 761015 c.1209G>C synonymous_variant 0.32
rpoB 761021 c.1215G>C synonymous_variant 0.42
rpoB 761027 c.1221A>G synonymous_variant 0.43
rpoB 761036 c.1230G>C synonymous_variant 0.35
rpoB 761037 c.1231T>C synonymous_variant 0.35
rpoB 761057 c.1251G>C synonymous_variant 0.27
rpoB 761102 c.1296A>G synonymous_variant 0.2
rpoB 761132 c.1326G>T synonymous_variant 0.12
rpoB 761213 c.1407G>C synonymous_variant 0.15
rpoB 761219 c.1413G>C synonymous_variant 0.21
rpoB 761249 c.1443A>G synonymous_variant 0.24
rpoB 761255 c.1449T>G synonymous_variant 0.24
rpoB 761261 c.1455G>T synonymous_variant 0.23
rpoB 761457 p.Pro551Ser missense_variant 0.17
rpoB 761492 c.1686G>C synonymous_variant 0.14
rpoB 761510 c.1704T>C synonymous_variant 0.19
rpoB 761537 c.1731C>G synonymous_variant 0.27
rpoB 761570 c.1764T>C synonymous_variant 0.36
rpoB 761573 c.1767C>G synonymous_variant 0.37
rpoB 761579 c.1773G>C synonymous_variant 0.38
rpoB 761588 c.1782C>T synonymous_variant 0.35
rpoB 761606 c.1800C>G synonymous_variant 0.33
rpoB 761612 c.1806G>C synonymous_variant 0.33
rpoB 761615 c.1809A>C synonymous_variant 0.34
rpoB 761636 c.1830G>T synonymous_variant 0.35
rpoB 761639 c.1833G>A synonymous_variant 0.36
rpoB 761645 c.1839C>G synonymous_variant 0.3
rpoB 761648 c.1842T>C synonymous_variant 0.29
rpoB 761657 c.1851C>G synonymous_variant 0.29
rpoB 761675 c.1869G>C synonymous_variant 0.14
rpoB 761747 c.1941G>C synonymous_variant 0.15
rpoB 761750 c.1944G>C synonymous_variant 0.16
rpoB 761772 p.His656Ala missense_variant 0.14
rpoB 761778 p.Asn658Asp missense_variant 0.17
rpoB 761791 p.Arg662His missense_variant 0.16
rpoB 761813 c.2007T>C synonymous_variant 0.19
rpoB 761815 p.Ala670Glu missense_variant 0.19
rpoB 761858 c.2052G>C synonymous_variant 0.15
rpoB 761873 c.2067A>C synonymous_variant 0.18
rpoB 761885 c.2079T>C synonymous_variant 0.2
rpoB 761906 c.2100C>G synonymous_variant 0.14
rpoB 761916 p.Asp704Asn missense_variant 0.13
rpoB 761948 c.2142G>C synonymous_variant 0.22
rpoB 761954 c.2148C>G synonymous_variant 0.24
rpoB 762008 c.2202C>T synonymous_variant 0.29
rpoB 762014 c.2208C>T synonymous_variant 0.3
rpoB 762017 c.2211A>G synonymous_variant 0.33
rpoB 762053 c.2247T>C synonymous_variant 0.23
rpoB 762062 c.2256T>C synonymous_variant 0.2
rpoB 762065 c.2259T>C synonymous_variant 0.2
rpoB 762083 c.2277T>C synonymous_variant 0.15
rpoB 762086 c.2280G>C synonymous_variant 0.15
rpoB 762114 p.Ile770Val missense_variant 0.16
rpoB 762131 c.2325C>G synonymous_variant 0.16
rpoB 762140 c.2334G>C synonymous_variant 0.21
rpoB 762143 c.2337T>C synonymous_variant 0.2
rpoB 762149 c.2343G>C synonymous_variant 0.21
rpoB 762167 c.2361T>C synonymous_variant 0.22
rpoB 762176 c.2370T>C synonymous_variant 0.22
rpoB 762185 c.2379G>C synonymous_variant 0.24
rpoB 762206 c.2400C>G synonymous_variant 0.25
rpoB 762233 c.2427G>C synonymous_variant 0.28
rpoB 762246 c.2440C>T synonymous_variant 0.32
rpoB 762254 c.2448T>G synonymous_variant 0.3
rpoB 762257 c.2451C>G synonymous_variant 0.3
rpoB 762266 c.2460T>C synonymous_variant 0.3
rpoB 762284 c.2478G>C synonymous_variant 0.32
rpoB 762293 c.2487T>C synonymous_variant 0.31
rpoB 762314 c.2508C>T synonymous_variant 0.21
rpoB 762317 c.2511A>G synonymous_variant 0.18
rpoB 762329 c.2523G>C synonymous_variant 0.16
rpoB 762338 c.2532T>C synonymous_variant 0.14
rpoB 762347 c.2541T>C synonymous_variant 0.15
rpoB 762362 p.Glu852Asp missense_variant 0.18
rpoB 762369 c.2563T>C synonymous_variant 0.24
rpoC 762398 c.-972T>C upstream_gene_variant 0.21
rpoC 762401 c.-969G>C upstream_gene_variant 0.2
rpoC 762404 c.-966T>C upstream_gene_variant 0.23
rpoC 762410 c.-960T>C upstream_gene_variant 0.26
rpoC 762416 c.-954A>G upstream_gene_variant 0.26
rpoC 762419 c.-951C>G upstream_gene_variant 0.26
rpoC 762434 c.-936T>C upstream_gene_variant 0.26
rpoC 762449 c.-921C>A upstream_gene_variant 0.2
rpoC 762467 c.-903C>T upstream_gene_variant 0.14
rpoC 762509 c.-861T>G upstream_gene_variant 0.26
rpoB 762510 p.Ala902Pro missense_variant 0.26
rpoC 762521 c.-849C>T upstream_gene_variant 0.24
rpoC 762533 c.-837T>C upstream_gene_variant 0.22
rpoC 762536 c.-834T>C upstream_gene_variant 0.22
rpoC 762537 c.-833T>C upstream_gene_variant 0.22
rpoC 762551 c.-819C>G upstream_gene_variant 0.24
rpoC 762581 c.-789T>C upstream_gene_variant 0.21
rpoC 762582 c.-788T>C upstream_gene_variant 0.21
rpoC 762857 c.-513C>G upstream_gene_variant 0.14
rpoC 762860 c.-510G>C upstream_gene_variant 0.14
rpoC 762863 c.-507T>C upstream_gene_variant 0.14
rpoC 762929 c.-441G>C upstream_gene_variant 0.22
rpoC 762989 c.-381G>C upstream_gene_variant 0.34
rpoC 763013 c.-357C>G upstream_gene_variant 0.31
rpoC 763028 c.-342T>C upstream_gene_variant 0.27
rpoC 763031 c.-339T>G upstream_gene_variant 0.26
rpoC 763034 c.-336C>G upstream_gene_variant 0.26
rpoC 763040 c.-330C>G upstream_gene_variant 0.28
rpoC 763070 c.-300T>C upstream_gene_variant 0.24
rpoC 763085 c.-285C>G upstream_gene_variant 0.18
rpoC 763402 c.33C>G synonymous_variant 0.15
rpoC 763411 c.42T>G synonymous_variant 0.19
rpoC 763414 c.45T>C synonymous_variant 0.19
rpoC 763441 c.72C>T synonymous_variant 0.25
rpoC 763444 c.75T>C synonymous_variant 0.25
rpoC 763456 c.87A>G synonymous_variant 0.29
rpoC 763486 c.117T>G synonymous_variant 0.32
rpoC 763528 c.159G>A synonymous_variant 0.23
rpoC 763546 c.177A>G synonymous_variant 0.24
rpoC 763570 c.201G>C synonymous_variant 0.21
rpoC 763573 c.204G>C synonymous_variant 0.17
rpoC 763594 c.225C>T synonymous_variant 0.23
rpoC 763633 c.264T>C synonymous_variant 0.28
rpoC 763636 c.267T>C synonymous_variant 0.27
rpoC 763660 c.291T>G synonymous_variant 0.36
rpoC 763675 c.306C>G synonymous_variant 0.35
rpoC 763696 c.327T>C synonymous_variant 0.35
rpoC 763702 c.333C>G synonymous_variant 0.35
rpoC 763717 c.348T>C synonymous_variant 0.33
rpoC 763723 c.354G>C synonymous_variant 0.33
rpoC 763732 c.363C>G synonymous_variant 0.33
rpoC 763741 c.372C>T synonymous_variant 0.3
rpoC 763744 c.375G>C synonymous_variant 0.3
rpoC 763765 c.396T>C synonymous_variant 0.3
rpoC 763774 c.405G>C synonymous_variant 0.3
rpoC 763807 c.438T>C synonymous_variant 0.27
rpoC 763816 c.447C>G synonymous_variant 0.26
rpoC 763835 p.Ala156Met missense_variant 0.22
rpoC 763853 p.Val162Ile missense_variant 0.16
rpoC 764059 c.690G>T synonymous_variant 0.24
rpoC 764083 c.714A>G synonymous_variant 0.24
rpoC 764098 c.729A>G synonymous_variant 0.26
rpoC 764101 c.732C>G synonymous_variant 0.26
rpoC 764102 p.Val245Ile missense_variant 0.26
rpoC 764112 p.Tyr248Phe missense_variant 0.3
rpoC 764116 c.747C>T synonymous_variant 0.31
rpoC 764131 c.762T>C synonymous_variant 0.32
rpoC 764140 c.771C>T synonymous_variant 0.27
rpoC 764188 c.819A>G synonymous_variant 0.18
rpoC 764215 c.846A>G synonymous_variant 0.15
rpoC 764236 c.867G>A synonymous_variant 0.13
rpoC 764248 c.879C>G synonymous_variant 0.13
rpoC 764554 c.1185C>T synonymous_variant 0.12
rpoC 764575 c.1206T>G synonymous_variant 0.13
rpoC 764593 c.1224C>T synonymous_variant 0.26
rpoC 764611 c.1242G>T synonymous_variant 0.29
rpoC 764650 c.1281G>C synonymous_variant 0.33
rpoC 764651 c.1282_1284delTCGinsAGC synonymous_variant 0.33
rpoC 764888 c.1519T>C synonymous_variant 0.13
rpoC 764911 c.1542A>G synonymous_variant 0.17
rpoC 764932 c.1563C>A synonymous_variant 0.28
rpoC 764935 c.1566T>C synonymous_variant 0.32
rpoC 764948 c.1579T>C synonymous_variant 0.33
rpoC 764968 c.1599T>C synonymous_variant 0.36
rpoC 764995 c.1626C>G synonymous_variant 0.35
rpoC 765019 c.1650A>G synonymous_variant 0.31
rpoC 765034 c.1665T>C synonymous_variant 0.33
rpoC 765040 c.1671T>C synonymous_variant 0.26
rpoC 765041 c.1672T>C synonymous_variant 0.23
rpoC 765047 c.1678T>C synonymous_variant 0.27
rpoC 765053 c.1684_1685delTCinsAG synonymous_variant 0.27
rpoC 765073 c.1704G>C synonymous_variant 0.32
rpoC 765076 c.1707A>G synonymous_variant 0.3
rpoC 765079 c.1710T>G synonymous_variant 0.3
rpoC 765082 c.1713G>C synonymous_variant 0.3
rpoC 765089 c.1720T>C synonymous_variant 0.33
rpoC 765103 c.1734G>T synonymous_variant 0.24
rpoC 765298 c.1929G>C synonymous_variant 0.14
rpoC 765300 p.Val644Ala missense_variant 0.14
rpoC 765319 c.1950A>G synonymous_variant 0.14
rpoC 765326 p.His653Ala missense_variant 0.15
rpoC 765329 p.Ser654Gly missense_variant 0.14
rpoC 765346 c.1977C>G synonymous_variant 0.14
rpoC 765383 p.Met672Leu missense_variant 0.21
rpoC 765404 p.Leu679Val missense_variant 0.23
rpoC 765409 c.2040T>C synonymous_variant 0.22
rpoC 765421 c.2052C>G synonymous_variant 0.24
rpoC 765478 c.2109T>C synonymous_variant 0.18
rpoC 765613 p.His748Gln missense_variant 0.17
rpoC 765625 c.2256C>G synonymous_variant 0.19
rpoC 765631 p.Asp754Glu missense_variant 0.22
rpoC 765700 c.2331T>C synonymous_variant 0.33
rpoC 765734 c.2365T>C synonymous_variant 0.24
rpoC 765739 c.2370G>T synonymous_variant 0.26
rpoC 765751 c.2382C>G synonymous_variant 0.18
rpoC 765753 p.Asp795Ala missense_variant 0.17
rpoC 765772 c.2403C>G synonymous_variant 0.21
rpoC 765784 c.2415C>G synonymous_variant 0.21
rpoC 765787 c.2418C>T synonymous_variant 0.2
rpoC 765793 c.2424C>G synonymous_variant 0.17
rpoC 765796 c.2427C>T synonymous_variant 0.16
rpoC 765811 c.2442T>C synonymous_variant 0.14
rpoC 765814 c.2445A>G synonymous_variant 0.16
rpoC 765826 c.2457T>C synonymous_variant 0.16
rpoC 765835 c.2466C>T synonymous_variant 0.2
rpoC 765850 c.2481G>C synonymous_variant 0.23
rpoC 765883 c.2514C>G synonymous_variant 0.24
rpoC 765886 c.2517C>G synonymous_variant 0.22
rpoC 765892 c.2523T>C synonymous_variant 0.22
rpoC 765937 c.2568T>C synonymous_variant 0.15
rpoC 765967 c.2598C>T synonymous_variant 0.17
rpoC 765982 c.2613C>G synonymous_variant 0.19
rpoC 765994 c.2625A>T synonymous_variant 0.27
rpoC 766010 c.2641_2642delTCinsAG synonymous_variant 0.26
rpoC 766021 c.2652G>C synonymous_variant 0.29
rpoC 766027 c.2658G>C synonymous_variant 0.31
rpoC 766030 c.2661C>G synonymous_variant 0.29
rpoC 766036 c.2667C>T synonymous_variant 0.31
rpoC 766043 p.Gln892Glu missense_variant 0.29
rpoC 766054 c.2685C>G synonymous_variant 0.32
rpoC 766082 p.Ala905Gln missense_variant 0.3
rpoC 766085 p.Pro906Ala missense_variant 0.68
rpoC 766096 c.2727G>C synonymous_variant 0.26
rpoC 766129 c.2760C>G synonymous_variant 0.16
rpoC 766135 c.2766G>A synonymous_variant 0.14
rpoC 766141 c.2772C>T synonymous_variant 0.14
rpoC 766142 c.2773C>T synonymous_variant 0.14
rpoC 766312 c.2943T>G synonymous_variant 0.17
rpoC 766327 c.2958C>A synonymous_variant 0.19
rpoC 766345 c.2976T>C synonymous_variant 0.22
rpoC 766348 c.2979A>G synonymous_variant 0.24
rpoC 766357 c.2988C>T synonymous_variant 0.27
rpoC 766363 c.2994G>C synonymous_variant 0.29
rpoC 766381 c.3012C>T synonymous_variant 0.43
rpoC 766384 c.3015A>G synonymous_variant 0.45
rpoC 766408 c.3039C>G synonymous_variant 0.36
rpoC 766411 c.3042C>G synonymous_variant 0.36
rpoC 766426 c.3057C>T synonymous_variant 0.39
rpoC 766447 c.3078T>C synonymous_variant 0.37
rpoC 766462 c.3093G>C synonymous_variant 0.32
rpoC 766483 c.3114G>C synonymous_variant 0.24
rpoC 766484 p.Val1039Ile missense_variant 0.24
rpoC 766492 c.3123T>C synonymous_variant 0.27
rpoC 766522 c.3153C>G synonymous_variant 0.19
rpoC 766528 c.3159T>C synonymous_variant 0.2
rpoC 766531 c.3162G>C synonymous_variant 0.21
rpoC 766540 p.Asp1057Glu missense_variant 0.3
rpoC 766549 c.3180G>C synonymous_variant 0.32
rpoC 766573 c.3204T>C synonymous_variant 0.19
rpoC 766582 c.3213C>G synonymous_variant 0.19
rpoC 766583 p.Gly1072Ser missense_variant 0.18
rpoC 766591 c.3222A>G synonymous_variant 0.17
rpoC 766594 c.3225G>C synonymous_variant 0.17
rpoC 766597 c.3228C>G synonymous_variant 0.17
rpoC 766607 p.Ile1080Leu missense_variant 0.21
rpoC 766630 c.3261G>C synonymous_variant 0.14
rpoC 766657 c.3288A>G synonymous_variant 0.16
rpoC 766672 c.3303T>C synonymous_variant 0.16
rpoC 766673 p.Gly1102Asn missense_variant 0.16
rpoC 766726 c.3357T>C synonymous_variant 0.14
rpoC 766774 c.3405T>C synonymous_variant 0.14
rpoC 766801 c.3432C>G synonymous_variant 0.17
rpoC 766804 c.3435A>G synonymous_variant 0.17
rpoC 767033 c.3664_3666delTCGinsAGC synonymous_variant 0.15
rpoC 767059 c.3690T>G synonymous_variant 0.21
rpoC 767062 c.3693C>A synonymous_variant 0.23
rpoC 767098 c.3729T>C synonymous_variant 0.18
mmpL5 775639 p.Ile948Val missense_variant 1.0
rpsL 781395 c.-165T>C upstream_gene_variant 1.0
rpsL 781571 c.12C>T synonymous_variant 0.14
rpsL 781595 c.36T>C synonymous_variant 0.24
rpsL 781605 p.Ile16Val missense_variant 0.25
rpsL 781608 p.Ser17Ala missense_variant 0.25
rpsL 781628 c.69T>C synonymous_variant 0.3
rpsL 781631 c.72G>C synonymous_variant 0.3
rpsL 781649 c.90T>C synonymous_variant 0.37
rpsL 781655 c.96T>C synonymous_variant 0.37
rpsL 781700 c.141G>C synonymous_variant 0.25
rpsL 781703 c.144G>T synonymous_variant 0.26
rpsL 781715 c.156T>C synonymous_variant 0.27
rpsL 781728 c.169T>C synonymous_variant 0.27
rpsL 781736 c.177T>C synonymous_variant 0.28
rpsL 781742 c.183C>T synonymous_variant 0.3
rpsL 781748 c.189C>G synonymous_variant 0.32
rpsL 781754 c.195G>C synonymous_variant 0.34
rpsL 781760 c.201T>C synonymous_variant 0.38
rpsL 781772 c.213C>A synonymous_variant 0.38
rpsL 781808 c.249C>T synonymous_variant 0.35
rpsL 781811 c.252C>T synonymous_variant 0.34
rpsL 781832 c.273T>C synonymous_variant 0.31
rpsL 781838 c.279G>C synonymous_variant 0.3
rpsL 781841 c.282C>G synonymous_variant 0.31
rpsL 781865 c.306G>C synonymous_variant 0.27
rpsL 781868 c.309T>C synonymous_variant 0.26
rpsL 781871 c.312G>C synonymous_variant 0.26
rpsL 781877 c.318T>C synonymous_variant 0.29
rpsL 781892 c.333A>G synonymous_variant 0.29
rpsL 781898 c.339A>T synonymous_variant 0.26
rpsL 781916 c.357T>C synonymous_variant 0.33
rpsL 781929 p.Gly124Ser missense_variant 0.38
rplC 800648 c.-161A>T upstream_gene_variant 0.24
rplC 800654 c.-155T>C upstream_gene_variant 0.23
rplC 800693 c.-116A>G upstream_gene_variant 0.38
rplC 800703 c.-106T>C upstream_gene_variant 0.35
rplC 800715 c.-94A>C upstream_gene_variant 0.37
rplC 800720 c.-89T>C upstream_gene_variant 0.36
rplC 800723 c.-86C>G upstream_gene_variant 0.33
rplC 800747 c.-62C>G upstream_gene_variant 0.25
rplC 800771 c.-38C>T upstream_gene_variant 0.21
rplC 800794 c.-15A>G upstream_gene_variant 0.15
rplC 800796 c.-13A>G upstream_gene_variant 0.15
rplC 800798 c.-10_-9delGG upstream_gene_variant 0.15
rplC 800814 c.6A>G synonymous_variant 0.21
rplC 800817 c.9A>T synonymous_variant 0.21
rplC 800844 c.36T>C synonymous_variant 0.28
rplC 800865 c.57A>G synonymous_variant 0.24
rplC 800867 p.Ser20Asn missense_variant 0.24
rplC 800874 c.66A>G synonymous_variant 0.23
rplC 800875 p.Val23Ile missense_variant 0.21
rplC 800880 c.72A>G synonymous_variant 0.22
rplC 800889 c.81C>G synonymous_variant 0.24
rplC 800892 c.84G>C synonymous_variant 0.24
rplC 800907 c.99C>G synonymous_variant 0.27
rplC 800916 c.108A>G synonymous_variant 0.24
rplC 801246 c.438C>T synonymous_variant 0.14
rplC 801282 c.474G>C synonymous_variant 0.13
rplC 801300 c.492C>G synonymous_variant 0.14
rplC 801367 p.Ala187Thr missense_variant 0.14
fbiC 1303761 c.831T>C synonymous_variant 0.14
fbiC 1303791 p.Ile287Met missense_variant 0.13
fbiC 1303797 c.867A>G synonymous_variant 0.15
fbiC 1303818 c.888C>G synonymous_variant 0.17
fbiC 1303845 c.915C>G synonymous_variant 0.15
fbiC 1303846 p.Phe306Val missense_variant 0.16
fbiC 1303854 c.924T>C synonymous_variant 0.16
fbiC 1303860 c.930A>C synonymous_variant 0.13
fbiC 1303884 c.954T>G synonymous_variant 0.14
fbiC 1304553 c.1623C>T synonymous_variant 0.12
atpE 1460852 c.-193C>G upstream_gene_variant 0.18
atpE 1460855 c.-190T>C upstream_gene_variant 0.19
atpE 1460858 c.-187C>G upstream_gene_variant 0.17
atpE 1460861 c.-184C>G upstream_gene_variant 0.17
atpE 1460882 c.-163T>C upstream_gene_variant 0.17
atpE 1460992 c.-53A>C upstream_gene_variant 1.0
rrs 1471659 n.-187C>T upstream_gene_variant 1.0
rrs 1471923 n.78T>C non_coding_transcript_exon_variant 0.2
rrs 1471925 n.80T>C non_coding_transcript_exon_variant 0.19
rrs 1471932 n.87A>G non_coding_transcript_exon_variant 0.2
rrs 1471934 n.89A>G non_coding_transcript_exon_variant 0.2
rrs 1471935 n.90T>C non_coding_transcript_exon_variant 0.2
rrs 1471969 n.124T>C non_coding_transcript_exon_variant 0.14
rrs 1471970 n.125G>A non_coding_transcript_exon_variant 0.13
rrs 1472028 n.183A>T non_coding_transcript_exon_variant 0.14
rrs 1472029 n.184C>T non_coding_transcript_exon_variant 0.14
rrs 1472030 n.185G>T non_coding_transcript_exon_variant 0.14
rrs 1472031 n.186G>A non_coding_transcript_exon_variant 0.13
rrs 1472061 n.216A>T non_coding_transcript_exon_variant 0.14
rrs 1472075 n.230A>G non_coding_transcript_exon_variant 0.21
rrs 1472108 n.263C>T non_coding_transcript_exon_variant 0.19
rrs 1472969 n.1124A>G non_coding_transcript_exon_variant 0.5
rrs 1472970 n.1125C>G non_coding_transcript_exon_variant 0.47
rrs 1472977 n.1132G>C non_coding_transcript_exon_variant 0.41
rrs 1472978 n.1133T>C non_coding_transcript_exon_variant 0.41
rrs 1473105 n.1260G>A non_coding_transcript_exon_variant 0.29
rrs 1473145 n.1300C>T non_coding_transcript_exon_variant 0.3
rrs 1473166 n.1321G>A non_coding_transcript_exon_variant 0.3
rrs 1473290 n.1445C>T non_coding_transcript_exon_variant 0.27
rrl 1473668 n.11C>T non_coding_transcript_exon_variant 0.24
rrl 1473756 n.99G>A non_coding_transcript_exon_variant 0.48
rrl 1473758 n.101G>T non_coding_transcript_exon_variant 0.48
rrl 1473806 n.149C>T non_coding_transcript_exon_variant 0.43
rrl 1473832 n.175C>T non_coding_transcript_exon_variant 0.3
rrl 1473877 n.220G>A non_coding_transcript_exon_variant 0.19
rrl 1473898 n.241C>T non_coding_transcript_exon_variant 0.21
rrl 1473943 n.286G>T non_coding_transcript_exon_variant 0.22
rrl 1473945 n.288T>A non_coding_transcript_exon_variant 0.19
rrl 1473946 n.289A>T non_coding_transcript_exon_variant 0.19
rrl 1473986 n.329T>C non_coding_transcript_exon_variant 0.25
rrl 1473987 n.330G>A non_coding_transcript_exon_variant 0.25
rrl 1473995 n.338G>T non_coding_transcript_exon_variant 0.3
rrl 1474001 n.344C>T non_coding_transcript_exon_variant 1.0
rrl 1474009 n.352A>G non_coding_transcript_exon_variant 0.29
rrl 1474012 n.355C>T non_coding_transcript_exon_variant 0.29
rrl 1474093 n.436G>T non_coding_transcript_exon_variant 0.35
rrl 1474099 n.442G>A non_coding_transcript_exon_variant 0.33
rrl 1474103 n.446A>T non_coding_transcript_exon_variant 0.35
rrl 1474140 n.483C>T non_coding_transcript_exon_variant 0.26
rrl 1474151 n.494C>T non_coding_transcript_exon_variant 0.25
rrl 1474181 n.524C>T non_coding_transcript_exon_variant 0.28
rrl 1474249 n.592G>T non_coding_transcript_exon_variant 0.22
rrl 1474291 n.635_649delTTCCTCTCCGGAGGA non_coding_transcript_exon_variant 0.21
rrl 1474308 n.651G>T non_coding_transcript_exon_variant 0.18
rrl 1474310 n.653T>G non_coding_transcript_exon_variant 0.18
rrl 1474356 n.699T>C non_coding_transcript_exon_variant 0.2
rrl 1474362 n.705A>G non_coding_transcript_exon_variant 0.17
rrl 1474639 n.982G>A non_coding_transcript_exon_variant 0.3
rrl 1474794 n.1137C>T non_coding_transcript_exon_variant 0.35
rrl 1474812 n.1155G>A non_coding_transcript_exon_variant 0.37
rrl 1474823 n.1166C>T non_coding_transcript_exon_variant 0.36
rrl 1474831 n.1174A>G non_coding_transcript_exon_variant 0.42
rrl 1474904 n.1247G>A non_coding_transcript_exon_variant 0.23
rrl 1474956 n.1299C>T non_coding_transcript_exon_variant 0.16
rrl 1474960 n.1303C>G non_coding_transcript_exon_variant 0.17
rrl 1474963 n.1306G>T non_coding_transcript_exon_variant 0.16
rrl 1474964 n.1307T>A non_coding_transcript_exon_variant 0.21
rrl 1474965 n.1308G>C non_coding_transcript_exon_variant 0.18
rrl 1474970 n.1313G>A non_coding_transcript_exon_variant 0.26
rrl 1475006 n.1349A>T non_coding_transcript_exon_variant 0.32
rrl 1475061 n.1404C>T non_coding_transcript_exon_variant 0.38
rrl 1475088 n.1431A>T non_coding_transcript_exon_variant 0.35
rrl 1475199 n.1542G>A non_coding_transcript_exon_variant 0.37
rrl 1475206 n.1549C>T non_coding_transcript_exon_variant 0.34
rrl 1475209 n.1552G>C non_coding_transcript_exon_variant 0.36
rrl 1475213 n.1556C>T non_coding_transcript_exon_variant 0.38
rrl 1475249 n.1592T>C non_coding_transcript_exon_variant 0.3
rrl 1475252 n.1595C>T non_coding_transcript_exon_variant 0.3
rrl 1475266 n.1609T>C non_coding_transcript_exon_variant 0.2
rrl 1475267 n.1610G>A non_coding_transcript_exon_variant 0.2
rrl 1475275 n.1618C>T non_coding_transcript_exon_variant 0.18
rrl 1475276 n.1619T>C non_coding_transcript_exon_variant 0.18
rrl 1475291 n.1634A>C non_coding_transcript_exon_variant 0.22
rrl 1475313 n.1656G>A non_coding_transcript_exon_variant 0.17
rrl 1475315 n.1658A>T non_coding_transcript_exon_variant 0.17
rrl 1475355 n.1698C>T non_coding_transcript_exon_variant 0.18
rrl 1475369 n.1712G>T non_coding_transcript_exon_variant 0.17
rrl 1475483 n.1826C>T non_coding_transcript_exon_variant 0.16
rrl 1475505 n.1848G>A non_coding_transcript_exon_variant 0.19
rrl 1475526 n.1869C>A non_coding_transcript_exon_variant 0.18
rrl 1475599 n.1942A>G non_coding_transcript_exon_variant 0.28
rrl 1475608 n.1951T>C non_coding_transcript_exon_variant 0.27
rrl 1475642 n.1985T>C non_coding_transcript_exon_variant 0.25
rrl 1475657 n.2000A>G non_coding_transcript_exon_variant 0.22
rrl 1475659 n.2002G>T non_coding_transcript_exon_variant 0.2
rrl 1475765 n.2111delG non_coding_transcript_exon_variant 0.25
rrl 1475881 n.2224T>C non_coding_transcript_exon_variant 0.32
rrl 1475988 n.2331A>G non_coding_transcript_exon_variant 0.25
rrl 1476031 n.2374C>T non_coding_transcript_exon_variant 0.19
rrl 1476032 n.2375C>A non_coding_transcript_exon_variant 0.2
rrl 1476033 n.2376T>C non_coding_transcript_exon_variant 0.2
rrl 1476034 n.2377C>A non_coding_transcript_exon_variant 0.2
rrl 1476045 n.2388G>T non_coding_transcript_exon_variant 0.18
rrl 1476047 n.2390G>T non_coding_transcript_exon_variant 0.19
rrl 1476048 n.2391G>A non_coding_transcript_exon_variant 0.19
rrl 1476049 n.2392C>T non_coding_transcript_exon_variant 0.19
rrl 1476086 n.2429G>A non_coding_transcript_exon_variant 0.15
rrl 1476089 n.2432T>C non_coding_transcript_exon_variant 0.14
rrl 1476131 n.2474C>T non_coding_transcript_exon_variant 0.13
rrl 1476214 n.2557G>T non_coding_transcript_exon_variant 0.16
rrl 1476215 n.2558C>T non_coding_transcript_exon_variant 0.16
rrl 1476224 n.2567A>G non_coding_transcript_exon_variant 0.18
rrl 1476583 n.2926G>A non_coding_transcript_exon_variant 0.24
rrl 1476584 n.2927C>T non_coding_transcript_exon_variant 0.24
rrl 1476594 n.2937C>T non_coding_transcript_exon_variant 0.25
rrl 1476597 n.2940G>A non_coding_transcript_exon_variant 0.24
rrl 1476603 n.2946G>A non_coding_transcript_exon_variant 0.23
rrl 1476608 n.2951C>G non_coding_transcript_exon_variant 0.25
rrl 1476628 n.2971T>A non_coding_transcript_exon_variant 0.28
fabG1 1673380 c.-60C>G upstream_gene_variant 0.21
inhA 1673916 c.-286A>C upstream_gene_variant 0.13
inhA 1673922 c.-280T>C upstream_gene_variant 0.13
fabG1 1673941 p.Ala168Ser missense_variant 0.13
inhA 1673955 c.-247G>C upstream_gene_variant 0.14
inhA 1673961 c.-241A>C upstream_gene_variant 0.14
inhA 1673985 c.-217C>G upstream_gene_variant 0.14
rpsA 1833554 p.Thr5Ala missense_variant 0.15
rpsA 1833568 c.27G>C synonymous_variant 0.14
rpsA 1833589 c.48A>T synonymous_variant 0.17
rpsA 1833595 c.54T>C synonymous_variant 0.22
rpsA 1833661 c.120A>G synonymous_variant 0.23
rpsA 1833667 c.126C>G synonymous_variant 0.24
rpsA 1833721 c.180A>G synonymous_variant 0.28
rpsA 1833724 c.183C>G synonymous_variant 0.27
rpsA 1833727 c.186G>C synonymous_variant 0.28
rpsA 1833742 c.201A>G synonymous_variant 0.32
rpsA 1833745 c.204G>C synonymous_variant 0.32
rpsA 1833748 c.207C>G synonymous_variant 0.34
rpsA 1833787 c.246C>G synonymous_variant 0.32
rpsA 1833790 c.249T>C synonymous_variant 0.33
rpsA 1833802 c.261A>G synonymous_variant 0.31
rpsA 1833811 c.270G>T synonymous_variant 0.31
rpsA 1833838 c.297G>C synonymous_variant 0.29
rpsA 1833841 c.300C>G synonymous_variant 0.29
rpsA 1833847 c.306C>G synonymous_variant 0.27
rpsA 1833856 c.315A>G synonymous_variant 0.27
rpsA 1833874 c.333T>C synonymous_variant 0.23
rpsA 1833886 c.345C>G synonymous_variant 0.2
rpsA 1833928 c.387G>C synonymous_variant 0.16
rpsA 1833940 c.399C>G synonymous_variant 0.18
rpsA 1833971 c.430C>T synonymous_variant 0.19
rpsA 1833979 c.438T>C synonymous_variant 0.19
rpsA 1834000 c.459G>C synonymous_variant 0.19
rpsA 1834021 c.480C>T synonymous_variant 0.17
rpsA 1834030 c.489C>G synonymous_variant 0.19
rpsA 1834690 c.1149T>C synonymous_variant 0.15
rpsA 1834732 c.1191T>C synonymous_variant 0.14
rpsA 1834733 p.Ala398Ser missense_variant 0.15
rpsA 1834738 c.1197A>G synonymous_variant 0.15
rpsA 1834753 c.1212T>C synonymous_variant 0.21
rpsA 1834765 p.Glu408Asp missense_variant 0.24
rpsA 1834775 p.Ala412Thr missense_variant 0.26
rpsA 1834780 c.1239A>G synonymous_variant 0.29
rpsA 1834786 c.1245A>G synonymous_variant 0.29
rpsA 1834789 c.1248T>C synonymous_variant 0.25
rpsA 1834792 c.1251G>C synonymous_variant 0.26
tlyA 1917972 c.33A>G synonymous_variant 1.0
ndh 2101988 p.Ala352Asp missense_variant 0.15
katG 2155691 c.421T>C synonymous_variant 0.26
katG 2155695 c.417C>G synonymous_variant 0.3
katG 2155704 c.408C>G synonymous_variant 0.3
katG 2155716 c.396T>G synonymous_variant 0.24
katG 2155719 c.393G>A synonymous_variant 0.24
katG 2155722 c.390G>C synonymous_variant 0.25
katG 2155728 c.384G>C synonymous_variant 0.25
katG 2155740 p.Gly124Gln missense_variant 0.26
katG 2155743 c.369G>C synonymous_variant 0.25
PPE35 2170048 p.Leu189Val missense_variant 0.47
PPE35 2170053 p.Thr187Ser missense_variant 0.38
Rv1979c 2223293 c.-129A>G upstream_gene_variant 1.0
pncA 2289925 c.-684T>C upstream_gene_variant 0.18
pncA 2289949 c.-708A>G upstream_gene_variant 0.14
pncA 2289991 c.-750G>C upstream_gene_variant 0.13
pncA 2289994 c.-753A>G upstream_gene_variant 0.14
pncA 2289997 c.-756G>C upstream_gene_variant 0.18
pncA 2290009 c.-768A>G upstream_gene_variant 0.21
pncA 2290015 c.-774A>C upstream_gene_variant 0.19
pncA 2290024 c.-783C>G upstream_gene_variant 0.19
pncA 2290038 c.-797G>A upstream_gene_variant 0.12
kasA 2517950 c.-165C>G upstream_gene_variant 0.24
kasA 2517989 c.-126T>C upstream_gene_variant 0.23
kasA 2517993 c.-122G>T upstream_gene_variant 0.24
kasA 2518019 c.-96A>G upstream_gene_variant 0.16
kasA 2518146 p.Phe11Tyr missense_variant 0.14
kasA 2518162 c.48G>A synonymous_variant 0.2
kasA 2518174 c.60A>G synonymous_variant 0.23
kasA 2518190 p.Ser26Ala missense_variant 0.21
kasA 2518199 p.Ile29Val missense_variant 0.19
kasA 2518220 c.106C>T synonymous_variant 0.19
kasA 2518234 c.120G>A synonymous_variant 0.22
kasA 2518421 p.Val103Leu missense_variant 0.16
kasA 2518429 c.315A>C synonymous_variant 0.19
kasA 2518439 p.Ala109Ser missense_variant 0.29
kasA 2518444 c.330T>C synonymous_variant 0.31
kasA 2518447 c.333T>G synonymous_variant 0.35
kasA 2518459 c.345T>C synonymous_variant 0.21
kasA 2518462 c.348A>C synonymous_variant 0.2
kasA 2518468 c.354A>C synonymous_variant 0.2
kasA 2518474 c.360G>A synonymous_variant 0.21
kasA 2518480 c.366T>C synonymous_variant 0.2
kasA 2518483 c.369C>G synonymous_variant 0.2
kasA 2518506 p.Ala131Glu missense_variant 0.15
kasA 2519116 c.1002C>G synonymous_variant 0.16
kasA 2519122 c.1008G>C synonymous_variant 0.17
kasA 2519158 c.1044C>T synonymous_variant 0.18
kasA 2519167 c.1053T>G synonymous_variant 0.28
kasA 2519173 c.1059C>G synonymous_variant 0.24
kasA 2519196 p.Thr361Ser missense_variant 0.2
kasA 2519215 c.1101C>T synonymous_variant 0.18
kasA 2519218 c.1104G>A synonymous_variant 0.15
kasA 2519221 c.1107G>C synonymous_variant 0.14
folC 2746390 c.1209G>C synonymous_variant 0.16
folC 2746393 c.1206C>G synonymous_variant 0.18
folC 2746401 p.Ser400Ala missense_variant 0.22
folC 2746402 c.1197T>C synonymous_variant 0.21
folC 2746414 p.Glu395Gln missense_variant 0.23
folC 2746420 c.1179A>C synonymous_variant 0.26
folC 2746426 c.1173G>C synonymous_variant 0.26
folC 2746438 c.1161G>C synonymous_variant 0.24
folC 2746451 p.Gly383Ala missense_variant 0.25
folC 2746471 c.1128C>A synonymous_variant 0.15
Rv2752c 3064673 p.Ala507Ser missense_variant 1.0
Rv2752c 3066009 c.183G>C synonymous_variant 0.16
Rv2752c 3066040 p.Gly51Thr missense_variant 0.14
Rv2752c 3066042 c.150T>C synonymous_variant 0.14
Rv2752c 3066045 c.147T>C synonymous_variant 0.14
Rv2752c 3066050 p.Leu48Met missense_variant 0.14
Rv2752c 3066054 c.138T>G synonymous_variant 0.17
Rv2752c 3066066 c.126T>C synonymous_variant 0.16
Rv2752c 3066075 c.117A>G synonymous_variant 0.16
thyX 3067601 p.Arg115His missense_variant 0.13
thyX 3067631 c.315C>G synonymous_variant 0.14
thyX 3067652 c.294T>C synonymous_variant 0.15
thyX 3067661 c.285C>G synonymous_variant 0.19
thyX 3067685 c.261A>C synonymous_variant 0.18
thyX 3067718 c.228C>G synonymous_variant 0.2
thyX 3067721 c.225T>C synonymous_variant 0.17
thyX 3067727 c.219A>C synonymous_variant 0.16
thyX 3067736 p.Phe70Leu missense_variant 0.17
thyX 3067739 c.207T>C synonymous_variant 0.18
thyX 3067761 p.Arg62Lys missense_variant 0.15
thyX 3067765 p.Leu61Ile missense_variant 0.17
thyX 3067772 c.174C>G synonymous_variant 0.19
thyX 3067781 c.165C>G synonymous_variant 0.22
thyX 3067793 c.153T>C synonymous_variant 0.23
thyX 3067799 c.147G>A synonymous_variant 0.19
thyX 3067802 c.144C>G synonymous_variant 0.17
thyX 3067814 c.132T>C synonymous_variant 0.19
thyX 3067850 c.96A>C synonymous_variant 0.22
thyX 3067869 p.Thr26Ser missense_variant 0.21
thyX 3067874 c.72C>G synonymous_variant 0.19
thyX 3067880 c.66C>T synonymous_variant 0.13
thyA 3073977 c.495A>G synonymous_variant 0.14
thyA 3074154 c.318T>C synonymous_variant 0.16
thyA 3074157 c.315C>G synonymous_variant 0.15
thyA 3074160 c.312A>G synonymous_variant 0.18
thyA 3074163 p.Ala103Thr missense_variant 0.15
thyA 3074172 c.300G>C synonymous_variant 0.17
thyA 3074175 c.297A>G synonymous_variant 0.16
thyA 3074181 c.291A>G synonymous_variant 0.15
thyA 3074187 c.285T>C synonymous_variant 0.16
thyA 3074205 p.Glu89Asp missense_variant 0.16
ald 3087770 c.951G>C synonymous_variant 0.19
alr 3840764 c.657G>C synonymous_variant 1.0
rpoA 3877507 p.Gly334Ala missense_variant 0.15
rpoA 3877515 c.993G>C synonymous_variant 0.18
rpoA 3877553 p.Glu319Gln missense_variant 0.31
rpoA 3877571 p.Pro313Ala missense_variant 0.33
rpoA 3877587 c.921A>G synonymous_variant 0.41
rpoA 3877613 p.Ile299Val missense_variant 0.35
rpoA 3877656 c.852T>G synonymous_variant 0.27
rpoA 3877668 c.840A>G synonymous_variant 0.26
rpoA 3877679 p.Ala277Ser missense_variant 0.22
rpoA 3877686 c.822A>G synonymous_variant 0.18
rpoA 3877692 c.816G>C synonymous_variant 0.17
rpoA 3877704 c.804G>C synonymous_variant 0.15
rpoA 3877737 c.771G>C synonymous_variant 0.14
rpoA 3877782 c.726T>C synonymous_variant 0.14
rpoA 3877791 c.717C>G synonymous_variant 0.17
rpoA 3877818 c.690A>G synonymous_variant 0.24
rpoA 3877839 c.669G>C synonymous_variant 0.21
rpoA 3877857 c.651G>A synonymous_variant 0.15
ddn 3986648 c.-196C>G upstream_gene_variant 0.14
clpC1 4038356 c.2349T>C synonymous_variant 0.14
clpC1 4038530 p.Glu725Asp missense_variant 0.19
clpC1 4038596 c.2109A>G synonymous_variant 0.19
clpC1 4038755 c.1950G>T synonymous_variant 0.19
clpC1 4038770 c.1935C>T synonymous_variant 0.19
clpC1 4038773 c.1932T>C synonymous_variant 0.18
clpC1 4038782 c.1923G>C synonymous_variant 0.19
clpC1 4038812 c.1893T>C synonymous_variant 0.15
clpC1 4038839 c.1866G>C synonymous_variant 0.17
clpC1 4038845 c.1860G>C synonymous_variant 0.2
clpC1 4038860 c.1845G>C synonymous_variant 0.18
clpC1 4038878 c.1827A>G synonymous_variant 0.23
clpC1 4038908 c.1797C>G synonymous_variant 0.27
clpC1 4038914 c.1791G>C synonymous_variant 0.24
clpC1 4038923 c.1782A>G synonymous_variant 0.2
clpC1 4038953 c.1752A>G synonymous_variant 0.17
clpC1 4038956 c.1749T>C synonymous_variant 0.16
clpC1 4038989 c.1716T>C synonymous_variant 0.13
clpC1 4039064 c.1641C>T synonymous_variant 0.17
clpC1 4039097 c.1608G>C synonymous_variant 0.16
clpC1 4039103 c.1602T>C synonymous_variant 0.15
clpC1 4039106 c.1599G>C synonymous_variant 0.15
clpC1 4039295 c.1410A>C synonymous_variant 0.17
clpC1 4039298 c.1407T>C synonymous_variant 0.18
clpC1 4039319 c.1386T>C synonymous_variant 0.17
clpC1 4039322 c.1383T>C synonymous_variant 0.17
clpC1 4039328 c.1377A>C synonymous_variant 0.16
clpC1 4039331 c.1374C>G synonymous_variant 0.16
clpC1 4039337 p.Thr456Gln missense_variant 0.15
clpC1 4039352 c.1353C>G synonymous_variant 0.17
clpC1 4039364 c.1341C>G synonymous_variant 0.17
clpC1 4039826 c.879C>G synonymous_variant 0.14
clpC1 4039850 c.855T>C synonymous_variant 0.14
clpC1 4039898 c.807C>G synonymous_variant 0.2
clpC1 4039928 c.775_777delAGCinsTCG synonymous_variant 0.2
clpC1 4039931 c.774T>C synonymous_variant 0.2
clpC1 4039937 c.768G>C synonymous_variant 0.23
clpC1 4039946 c.759A>C synonymous_variant 0.23
clpC1 4039952 c.753T>C synonymous_variant 0.23
panD 4044138 c.144T>C synonymous_variant 0.15
panD 4044150 c.132A>G synonymous_variant 0.17
panD 4044165 c.117G>C synonymous_variant 0.17
panD 4044188 c.94T>C synonymous_variant 0.14
panD 4044189 c.93C>T synonymous_variant 0.13
embC 4240178 c.316T>C synonymous_variant 0.25
embC 4240183 c.321A>G synonymous_variant 0.31
embC 4240204 c.342T>C synonymous_variant 0.38
embC 4240210 c.348C>G synonymous_variant 0.35
embC 4240216 c.354T>C synonymous_variant 0.4
embC 4240219 c.357C>G synonymous_variant 0.4
embC 4240222 c.360G>C synonymous_variant 0.43
embC 4240229 p.Leu123Ile missense_variant 0.46
embC 4240232 p.Gln124Val missense_variant 0.43
embC 4240249 p.Asp129Glu missense_variant 0.32
embC 4240258 c.396T>G synonymous_variant 0.24
embC 4240267 c.405T>C synonymous_variant 0.15
embC 4240270 c.408T>C synonymous_variant 0.15
embC 4240651 c.789G>A synonymous_variant 0.2
embC 4240669 c.807G>C synonymous_variant 0.2
embC 4240671 p.Thr270Ile missense_variant 0.2
embC 4240677 p.Gly272Ala missense_variant 0.18
embC 4240685 p.Thr275Ala missense_variant 0.31
embC 4240693 c.831T>G synonymous_variant 0.2
embC 4240699 c.837C>G synonymous_variant 0.18
embC 4240726 c.864G>C synonymous_variant 0.21
embC 4240780 c.918T>C synonymous_variant 0.21
embC 4240783 c.921G>C synonymous_variant 0.21
embC 4240789 c.927T>C synonymous_variant 0.18
embC 4240819 c.957A>G synonymous_variant 0.22
embC 4240828 c.966G>A synonymous_variant 0.19
embC 4240831 c.969T>G synonymous_variant 0.17
embC 4241013 p.Met384Thr missense_variant 0.16
embC 4241023 c.1161T>G synonymous_variant 0.26
embC 4241032 c.1170G>C synonymous_variant 0.25
embC 4241038 c.1176G>C synonymous_variant 0.26
embC 4241047 c.1185C>G synonymous_variant 0.24
embC 4241050 c.1188T>G synonymous_variant 0.25
embC 4241053 c.1191G>C synonymous_variant 0.25
embC 4241089 c.1227C>G synonymous_variant 0.18
embC 4241095 c.1233C>T synonymous_variant 0.18
embC 4241107 c.1245G>C synonymous_variant 0.23
embC 4241140 c.1278A>G synonymous_variant 0.22
embC 4241146 c.1284C>G synonymous_variant 0.23
embC 4241158 c.1296T>C synonymous_variant 0.19
embC 4241161 c.1299C>G synonymous_variant 0.18
embC 4241162 c.1300T>C synonymous_variant 0.19
embC 4241170 c.1308G>C synonymous_variant 0.18
embC 4241173 c.1311C>T synonymous_variant 0.17
embC 4241449 c.1587C>G synonymous_variant 0.2
embC 4241453 p.Ile531Val missense_variant 0.17
embC 4241479 c.1617C>G synonymous_variant 0.16
embC 4241480 c.1618T>C synonymous_variant 0.16
embC 4241488 c.1626G>C synonymous_variant 0.16
embC 4241496 p.Ala545Gly missense_variant 0.15
embC 4241500 c.1638A>C synonymous_variant 0.15
embC 4241501 p.Ser547Thr missense_variant 0.15
embC 4241506 c.1644G>C synonymous_variant 0.15
embC 4241521 c.1659T>C synonymous_variant 0.13
embC 4241591 p.Leu577Val missense_variant 0.15
embC 4241611 c.1749G>C synonymous_variant 0.17
embC 4241614 c.1752A>C synonymous_variant 0.16
embC 4241750 p.Leu630Val missense_variant 0.13
embA 4242643 c.-590C>T upstream_gene_variant 1.0
embA 4245182 c.1950T>C synonymous_variant 0.16
embA 4245198 p.Leu656Ile missense_variant 0.15
embA 4245215 c.1983A>C synonymous_variant 0.16
embA 4245222 p.Tyr664Gln missense_variant 0.18
embA 4245248 c.2016G>C synonymous_variant 0.18
embA 4245257 c.2025A>G synonymous_variant 0.18
embA 4245263 c.2031A>G synonymous_variant 0.15
embB 4247434 c.921C>G synonymous_variant 0.14
embB 4247437 c.924A>G synonymous_variant 0.15
embB 4247440 c.927C>G synonymous_variant 0.16
embB 4247446 c.933C>T synonymous_variant 0.14
embB 4247464 c.951C>G synonymous_variant 0.16
embB 4247470 c.957T>C synonymous_variant 0.15
embB 4248199 c.1686A>G synonymous_variant 0.13
embB 4248200 p.Ile563Val missense_variant 0.14
embB 4248205 c.1692C>G synonymous_variant 0.14
embB 4248206 p.Ser565Gly missense_variant 0.14
embB 4248220 c.1707A>C synonymous_variant 0.17
aftB 4268169 p.Ala223Gly missense_variant 0.14
aftB 4269006 c.-170T>C upstream_gene_variant 0.15
aftB 4269012 c.-176G>C upstream_gene_variant 0.15
aftB 4269027 c.-191C>T upstream_gene_variant 0.19
aftB 4269033 c.-197T>C upstream_gene_variant 0.15
aftB 4269036 c.-200C>G upstream_gene_variant 0.14
aftB 4269042 c.-206G>C upstream_gene_variant 0.14
aftB 4269179 c.-343C>A upstream_gene_variant 0.18
aftB 4269183 c.-347T>C upstream_gene_variant 0.19
aftB 4269186 c.-350C>G upstream_gene_variant 0.21
aftB 4269201 c.-365A>G upstream_gene_variant 0.24
ubiA 4269220 p.Ala205Lys missense_variant 0.23
aftB 4269222 c.-386T>C upstream_gene_variant 0.23
aftB 4269242 c.-406C>T upstream_gene_variant 0.24
ubiA 4269243 p.His197Gln missense_variant 0.24
aftB 4269249 c.-413G>A upstream_gene_variant 0.24
aftB 4269258 c.-422C>T upstream_gene_variant 0.21
ubiA 4269524 p.Thr104Ala missense_variant 0.14
aftB 4269528 c.-692G>C upstream_gene_variant 0.16
aftB 4269549 c.-713C>G upstream_gene_variant 0.16
aftB 4269552 c.-716C>G upstream_gene_variant 0.16
aftB 4269555 c.-719C>G upstream_gene_variant 0.15
aftB 4269564 c.-728G>C upstream_gene_variant 0.15
whiB6 4338595 c.-75delG upstream_gene_variant 1.0
Rv3083 3448507 c.5_*1408del frameshift_variant&stop_lost&splice_region_variant 1.0