Rv2477c - c.105T>C
Drug resistance types
9 Sensitive
7 RR-TB
56 HR-TB
17 MDR-TB
6 Pre-XDR-TB
2 XDR-TB
141 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.9 | 60 |
| lineage2.2.2;lineage4 | 1 |
| lineage4.1.2.1 | 10 |
| 17 | |
| lineage2.1 | 5 |
| lineage4.3.4.2.1 | 1 |
| lineage4.7 | 2 |
| lineage4.9;lineage6.3 | 7 |
| La1.7;M.canetti;lineage4.9 | 4 |
| lineage2.1;lineage4.9 | 14 |
| lineage3.1.2.1;lineage4.9 | 1 |
| lineage4.6.2.2 | 2 |
| lineage2.2 | 2 |
| La3;M.canetti;lineage2.2.1 | 1 |
| lineage2.2.1 | 8 |
| M.canetti;lineage2.1;lineage4.9 | 2 |
| lineage2.1;lineage6.3 | 2 |
| La1.7;lineage4.9 | 7 |
| lineage3 | 4 |
| La3;lineage2.2.2 | 1 |
| La3;lineage2.1;lineage4.9;lineage6.3 | 4 |
| lineage1;lineage4.9 | 1 |
| lineage4.9;lineage9 | 3 |
| lineage4 | 3 |
| La3;lineage4.9 | 3 |
| La1.2;La1.8.1 | 1 |
| lineage4.2.2.2 | 1 |
| M.canetti;lineage1 | 1 |
| lineage4.1.1.1 | 3 |
| La2;lineage4.9;lineage9 | 1 |
| La3 | 2 |
| La1.7.1;La1.7.X-unk4;lineage7 | 1 |
| lineage4.4.1.2 | 1 |
| lineage4.3.4.1 | 3 |
| lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 | 1 |
| lineage3.1 | 1 |
| lineage2.1;lineage4.9;lineage6.3 | 9 |
| lineage2.2.1.1 | 1 |
| La1.2.BCG | 1 |
| lineage4.6.3;lineage4.9 | 2 |
| lineage1.1.2;lineage2.2.1;lineage3.1.2.1 | 1 |
| lineage4.3.2;lineage4.9 | 1 |
| lineage4.1.2 | 1 |
| La1.2.BCG;La1.8.1 | 1 |
| lineage3.1.2.1;lineage3.1.2.2 | 1 |
| lineage4.6.1.1 | 1 |
| lineage6.3.1 | 1 |
| La3;lineage2 | 1 |
| La2;lineage2.2 | 1 |
| lineage4.3.3 | 1 |
| La3;lineage1.1.2 | 1 |
| La2;lineage4.9 | 2 |
| lineage2.2.1;lineage3 | 1 |
| lineage3.1.2.2 | 1 |
| La3;lineage4.3.4 | 1 |
| lineage3.1.1 | 1 |
| M.canetti;lineage4.9 | 3 |
| lineage4.8.1 | 1 |
| La3;lineage2.1;lineage4.9 | 2 |
| lineage4.9;lineage7 | 1 |
| lineage4.2;lineage4.6.3;lineage4.9 | 1 |
| lineage4.8 | 2 |
| La1.7 | 2 |
| La3;lineage2.1;lineage6.3 | 1 |
| M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | 1 |
| La3;lineage4.8 | 1 |
| M.canetti;lineage4.9;lineage9 | 1 |
| lineage4.2;lineage4.6.3;lineage4.9.1 | 1 |
| La1.7.X-unk4;lineage4.9 | 1 |
| lineage2.2.1;lineage6.3 | 1 |
| lineage1.1.2 | 1 |
| La1.7.1;lineage4.9 | 1 |
| lineage4.1.3 | 2 |
| La3;lineage2.2.1 | 1 |
| M.canetti;lineage2.1;lineage6.3 | 1 |
| lineage4.4.1.1 | 1 |
| lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 238 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR10808730 | Other | lineage4.9 | None | SRR29093105 | Other | lineage2.2.2;lineage4 | None | ERR9786601 | Other | lineage4.1.2.1 | None | ERR9786671 | Other | None | SRR12142341 | HR-TB | lineage2.1 | None | ERR176549 | Other | lineage4.3.4.2.1 | None | SRR29231479 | RR-TB | lineage4.9 | None | ERR4819422 | HR-TB | lineage4.9 | None | SRR7496523 | Other | lineage4.7 | None | SRR1173633 | Other | lineage4.9 | None | ERR9786604 | Other | None | SRR1165667 | Other | lineage4.9;lineage6.3 | None | SRR3675232 | Other | lineage4.1.2.1 | None | SRR3675505 | Other | La1.7;M.canetti;lineage4.9 | None | SRR3675465 | Other | lineage4.9;lineage6.3 | None | SRR29051093 | Other | lineage4.9 | None | SRR6045242 | Other | lineage2.1;lineage4.9 | None | ERR4819241 | Other | lineage4.9 | None | ERR2514390 | Sensitive | lineage3.1.2.1;lineage4.9 | None | SRR1173778 | Other | lineage4.9 | None | ERR11082350 | MDR-TB | lineage4.6.2.2 | None | ERR4818929 | HR-TB | lineage4.9 | None | ERR4810624 | MDR-TB | lineage2.2 | None | SRR18213713 | HR-TB | None | SRR28119717 | Other | lineage4.9;lineage6.3 | None | ERR3283019 | Other | lineage2.1;lineage4.9 | None | SRR3742657 | Pre-XDR-TB | La3;M.canetti;lineage2.2.1 | None | ERR4817896 | HR-TB | lineage2.2.1 | None | ERR4811022 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR19303884 | Other | lineage2.1;lineage6.3 | None | SRR3675501 | Other | La1.7;lineage4.9 | None | SRR5341332 | Pre-XDR-TB | lineage3 | None | ERR13245558 | MDR-TB | La3;lineage2.2.2 | None | ERR4811105 | HR-TB | La3;lineage2.1;lineage4.9;lineage6.3 | None | SRR3675267 | Other | La1.7;lineage4.9 | None | SRR15368973 | Other | lineage4.9 | None | ERR4815604 | Other | None | ERR1035157 | Other | lineage4.9 | None | ERR323045 | HR-TB | lineage1;lineage4.9 | None | SRR1174897 | MDR-TB | lineage4.9;lineage9 | None | ERR2027263 | Other | lineage4 | None | ERR3797015 | HR-TB | lineage4.9 | None | ERR4769521 | RR-TB | lineage4.9 | None | ERR1063883 | HR-TB | lineage4.9 | None | SRR1173706 | Other | lineage4.9 | None | SRR6789626 | Other | None | SRR29016901 | Other | La3;lineage4.9 | None | SRR6046783 | Other | La1.7;M.canetti;lineage4.9 | None | SRR7240033 | Other | La1.2;La1.8.1 | None | SRR3675461 | RR-TB | lineage4.9 | None | ERR4816999 | Other | None | ERR2513470 | Other | lineage4.2.2.2 | None | SRR29051077 | Other | lineage4.9 | None | SRR15014655 | Other | M.canetti;lineage1 | None | SRR1196546 | Other | lineage4.9 | None | ERR176793 | Other | lineage4.1.1.1 | None | SRR3675236 | Other | None | SRR3675524 | Other | lineage4.9;lineage6.3 | None | ERR3283044 | Other | lineage4 | None | ERR323053 | MDR-TB | La2;lineage4.9;lineage9 | None | SRR7535086 | Other | None | SRR1165699 | Other | lineage4.9 | None | ERR4800341 | Other | lineage3 | None | SRR1172728 | RR-TB | La3 | None | ERR9117709 | Other | None | SRR1172817 | Other | La3 | None | ERR3445501 | HR-TB | La1.7.1;La1.7.X-unk4;lineage7 | None | ERR323056 | HR-TB | lineage4.4.1.2 | None | ERR11466499 | Other | lineage4.3.4.1 | None | ERR736867 | Other | lineage2.1;lineage4.9 | None | ERR11465352 | Sensitive | lineage4.3.4.1 | None | ERR1334034 | Other | lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 | None | SRR1183111 | HR-TB | lineage4.9 | None | SRR3675517 | Other | La3;lineage2.1;lineage4.9;lineage6.3 | None | SRR1184346 | HR-TB | lineage3.1 | None | ERR9786645 | Other | lineage4.6.2.2 | None | SRR3675490 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR6079962 | HR-TB | lineage2.2.1.1 | None | ERR4798262 | HR-TB | La1.2.BCG | None | ERR176560 | HR-TB | La1.7;lineage4.9 | None | SRR3675221 | Other | lineage4.9 | None | SRR26159047 | Other | lineage4.6.3;lineage4.9 | None | SRR25827489 | XDR-TB | lineage1.1.2;lineage2.2.1;lineage3.1.2.1 | None | ERR987722 | MDR-TB | None | SRR25827682 | Other | None | SRR28119805 | Other | lineage4.9 | None | SRR6789621 | Other | lineage4.9 | None | SRR28119756 | Other | lineage4.9;lineage6.3 | None | ERR212034 | HR-TB | La1.7;lineage4.9 | None | ERR9786421 | Other | lineage4.1.2.1 | None | SRR6046305 | Sensitive | lineage4.9 | None | ERR4819781 | Other | lineage2.2.1 | None | ERR736865 | HR-TB | lineage4.3.2;lineage4.9 | None | ERR4818347 | Other | lineage4.1.2 | None | SRR1196566 | Other | lineage4.9 | None | SRR1172951 | Other | lineage4.9 | None | ERR3283027 | Other | lineage2.1;lineage4.9;lineage6.3 | None | ERR4818021 | Other | La1.2.BCG;La1.8.1 | None | SRR1196768 | MDR-TB | None | SRR19304036 | Other | La3;lineage2.1;lineage4.9;lineage6.3 | None | ERR181744 | HR-TB | La3;lineage4.9 | None | SRR29097026 | Other | lineage4.9 | None | SRR6046540 | Other | lineage2.1;lineage4.9 | None | ERR987729 | HR-TB | lineage3.1.2.1;lineage3.1.2.2 | None | SRR3675275 | Other | lineage4.9 | None | SRR1172310 | HR-TB | lineage4.9 | None | ERR6358755 | Other | lineage4.6.1.1 | None | ERR9787139 | Other | lineage6.3.1 | None | SRR1710057 | Other | lineage2.1 | None | ERR736871 | HR-TB | lineage2.1;lineage4.9;lineage6.3 | None | SRR20969677 | HR-TB | La3;lineage2 | None | ERR4811075 | Other | lineage2.1;lineage4.9;lineage6.3 | None | ERR1063839 | MDR-TB | La2;lineage2.2 | None | SRR1184298 | Pre-XDR-TB | lineage4.3.3 | None | ERR9786682 | Other | lineage4.1.2.1 | None | ERR9117721 | HR-TB | La3;lineage1.1.2 | None | SRR1169194 | Other | lineage4.9 | None | ERR323039 | HR-TB | La2;lineage4.9 | None | SRR1196677 | Other | lineage2.2 | None | ERR13267017 | Pre-XDR-TB | lineage2.2.1 | None | SRR3675529 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR6044790 | Other | lineage2.1;lineage4.9 | None | ERR1063857 | MDR-TB | La2;lineage4.9 | None | SRR1184312 | Other | lineage2.2.1 | None | ERR1035138 | MDR-TB | lineage2.1;lineage4.9 | None | SRR25827497 | XDR-TB | lineage2.2.1;lineage3 | None | ERR3283030 | HR-TB | lineage4.9 | None | SRR3675216 | Other | lineage2.1;lineage4.9 | None | SRR26159043 | Other | lineage4.9 | None | ERR4799478 | Pre-XDR-TB | lineage2.2.1 | None | ERR4798648 | MDR-TB | lineage3.1.2.2 | None | ERR161039 | HR-TB | La3;lineage4.3.4 | None | ERR161037 | Other | lineage4.9 | None | SRR1196474 | Other | lineage3.1.1 | None | ERR4820854 | Other | lineage4.1.2.1 | None | ERR1023525 | HR-TB | La1.7;lineage4.9 | None | SRR6045399 | Other | M.canetti;lineage4.9 | None | ERR4819877 | HR-TB | lineage4.9 | None | ERR4816478 | HR-TB | lineage4 | None | SRR8217918 | HR-TB | lineage4.9 | None | ERR736859 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR702406 | Other | lineage2.1 | None | ERR1063849 | HR-TB | lineage4.9 | None | SRR3675449 | Other | M.canetti;lineage4.9 | None | SRR3675581 | Other | lineage2.1;lineage4.9 | None | SRR1172234 | Other | lineage4.9 | None | ERR13265748 | Other | lineage4.9;lineage6.3 | None | SRR12708389 | MDR-TB | lineage4.8.1 | None | SRR3675488 | Other | La1.7;lineage4.9 | None | ERR11465353 | Sensitive | lineage4.3.4.1 | None | SRR5341302 | Other | La3;lineage2.1;lineage4.9 | None | SRR7496472 | Other | lineage4.9 | None | SRR1184294 | Other | lineage4.9 | None | ERR3804155 | Other | lineage4.1.2.1 | None | ERR3797070 | Other | lineage4.9 | None | ERR9786642 | Other | lineage4.1.2.1 | None | SRR28351341 | Other | lineage4.1.1.1 | None | SRR6046196 | Other | La1.7;M.canetti;lineage4.9 | None | SRR8552928 | HR-TB | lineage2.1;lineage4.9;lineage6.3 | None | ERR4814352 | Other | lineage2.2.1 | None | SRR1180226 | HR-TB | lineage4.9 | None | ERR3445502 | Sensitive | lineage4.9;lineage7 | None | SRR17832802 | HR-TB | lineage3 | None | ERR4815752 | Other | lineage4.9 | None | SRR3675572 | Other | None | SRR5341333 | Other | lineage2.1;lineage4.9 | None | SRR6045380 | Other | lineage2.1;lineage4.9 | None | ERR5311097 | Sensitive | lineage4.2;lineage4.6.3;lineage4.9 | None | ERR3275201 | Sensitive | lineage4.8 | nl | ERR502524 | HR-TB | lineage4.9;lineage6.3 | None | ERR1063858 | HR-TB | lineage4.9 | None | SRR29096541 | Other | lineage4.9 | None | SRR29096410 | Other | lineage4.9 | None | ERR3283036 | Other | lineage2.1;lineage4.9 | None | ERR9786694 | Other | lineage4.1.2.1 | None | ERR3283040 | HR-TB | lineage4.9 | None | SRR3675222 | Other | La1.7 | None | SRR3675508 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR1196583 | Other | lineage4.9 | None | ERR4810741 | HR-TB | La3;lineage2.1;lineage6.3 | None | SRR3675385 | Other | La1.7;lineage4.9 | None | SRR3742665 | HR-TB | M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | None | ERR4817893 | Other | La3;lineage4.8 | None | ERR1063856 | HR-TB | M.canetti;lineage4.9;lineage9 | None | ERR3283026 | HR-TB | lineage4.2;lineage4.6.3;lineage4.9.1 | None | SRR1175074 | Other | None | SRR1184388 | Other | lineage2.1;lineage4.9 | None | SRR3675214 | Other | lineage4.9 | None | ERR736874 | Other | La3;lineage2.1;lineage4.9 | None | SRR1173629 | Other | lineage2.1;lineage4.9 | None | SRR3675520 | Other | La1.7.X-unk4;lineage4.9 | None | ERR3797069 | Other | lineage4.9 | None | SRR26399973 | Other | La3;lineage4.9 | None | ERR4819932 | Other | lineage4.7 | None | SRR1173355 | Other | lineage4.9 | None | SRR3416776 | Other | lineage2.1 | None | ERR4811142 | RR-TB | La3;lineage2.1;lineage4.9;lineage6.3 | None | ERR4820773 | HR-TB | lineage4.9 | None | SRR3675467 | Other | lineage2.1;lineage4.9;lineage6.3 | None | ERR4830353 | Other | La1.7 | None | SRR28119811 | Other | lineage2.2.1;lineage6.3 | None | SRR21733183 | RR-TB | lineage1.1.2 | None | ERR9786617 | Other | lineage4.1.1.1 | None | ERR4769474 | HR-TB | lineage4.9 | None | ERR4798504 | RR-TB | lineage3 | None | SRR5341470 | MDR-TB | lineage4.9;lineage9 | None | SRR1184380 | Other | lineage2.1;lineage4.9 | None | SRR6046720 | HR-TB | lineage4.9;lineage9 | None | SRR6458423 | HR-TB | lineage2.2.1 | None | ERR4815441 | HR-TB | lineage4.9 | None | ERR1063859 | HR-TB | La1.7.1;lineage4.9 | None | ERR4811311 | Other | lineage2.1;lineage4.9;lineage6.3 | None | ERR1063862 | HR-TB | lineage4.9 | None | SRR29096150 | Other | lineage4.9 | None | ERR3804169 | HR-TB | lineage4.1.3 | None | ERR4817731 | HR-TB | lineage4.9 | None | ERR2446570 | Sensitive | lineage4.8 | nl | ERR11465232 | Sensitive | lineage4.1.2.1 | None | SRR28119777 | Other | lineage4.9 | None | ERR4816656 | Other | lineage4.9 | None | ERR9786611 | HR-TB | lineage4.1.3 | None | ERR5336148 | Other | lineage2.1;lineage6.3 | None | SRR1173400 | Other | lineage4.9 | None | SRR26937071 | MDR-TB | La3;lineage2.2.1 | None | SRR6045519 | MDR-TB | M.canetti;lineage4.9 | None | ERR1034634 | HR-TB | lineage4.9 | None | ERR4797054 | Pre-XDR-TB | lineage2.1 | None | ERR502532 | Other | M.canetti;lineage2.1;lineage6.3 | None | ERR4816559 | MDR-TB | lineage4.4.1.1 | None | SRR6045887 | Other | La1.7;M.canetti;lineage4.9 | None | ERR502912 | Other | lineage2.2.1 | None | SRR7131023 | Other | lineage4.1.2.1 | None | ERR11252558 | Other | lineage4.6.3;lineage4.9 | None | SRR12416824 | HR-TB | lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | None | SRR1184381 | MDR-TB | None | SRR1172857 | Other | None | ERR4817060 | Other | None | SRR28119752 | Other | lineage4.9 | None |
|---|
