Run ID: SRR5341332
Sample name:
Date: 04-04-2023 10:15:23
Number of reads: 3153174
Percentage reads mapped: 55.31
Strain: lineage3
Drug-resistance: Pre-XDR-TB
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage3 | East-African-Indian | CAS | RD750 | 0.97 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|---|---|---|---|---|
gyrA | 7582 | p.Asp94Gly | missense_variant | 0.91 | ofloxacin, moxifloxacin, levofloxacin, fluoroquinolones, ciprofloxacin |
rpoB | 761110 | p.Asp435Val | missense_variant | 0.86 | rifampicin |
rrs | 1473246 | n.1401A>G | non_coding_transcript_exon_variant | 0.82 | kanamycin, capreomycin, aminoglycosides, amikacin |
katG | 2154730 | p.Gln461Pro | missense_variant | 1.0 | isoniazid |
katG | 2155168 | p.Ser315Thr | missense_variant | 0.96 | isoniazid |
pncA | 2288806 | p.Ala146Thr | missense_variant | 1.0 | pyrazinamide |
embB | 4247431 | p.Met306Ile | missense_variant | 0.93 | ethambutol |
gid | 4408115 | c.87delC | frameshift_variant | 1.0 | streptomycin |
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrB | 6242 | c.1003_1005delCGCinsAGA | synonymous_variant | 0.14 |
gyrB | 6250 | c.1011A>G | synonymous_variant | 0.16 |
gyrB | 6256 | c.1017G>A | synonymous_variant | 0.15 |
gyrB | 6265 | c.1026C>T | synonymous_variant | 0.16 |
gyrB | 6268 | c.1029C>G | synonymous_variant | 0.17 |
gyrB | 6280 | c.1041T>C | synonymous_variant | 0.16 |
gyrB | 6286 | c.1047T>C | synonymous_variant | 0.15 |
gyrB | 6289 | c.1050C>T | synonymous_variant | 0.14 |
gyrA | 6304 | c.-998C>G | upstream_gene_variant | 0.14 |
gyrA | 6307 | c.-995T>G | upstream_gene_variant | 0.15 |
gyrA | 6649 | c.-653T>C | upstream_gene_variant | 0.14 |
gyrA | 6655 | c.-647T>C | upstream_gene_variant | 0.15 |
gyrA | 6670 | c.-632G>C | upstream_gene_variant | 0.15 |
gyrA | 6673 | c.-629A>C | upstream_gene_variant | 0.14 |
gyrA | 6676 | c.-626T>G | upstream_gene_variant | 0.14 |
gyrA | 6700 | c.-602T>C | upstream_gene_variant | 0.14 |
gyrB | 6963 | p.Arg575His | missense_variant | 0.92 |
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7457 | c.156T>C | synonymous_variant | 0.14 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 8324 | c.1023T>C | synonymous_variant | 0.15 |
gyrA | 8588 | c.1287G>A | synonymous_variant | 0.16 |
gyrA | 8603 | c.1302A>G | synonymous_variant | 0.16 |
gyrA | 8891 | c.1590G>A | synonymous_variant | 0.16 |
gyrA | 8897 | c.1596T>C | synonymous_variant | 0.18 |
gyrA | 8903 | c.1602T>C | synonymous_variant | 0.17 |
gyrA | 8933 | c.1632G>C | synonymous_variant | 0.15 |
gyrA | 9233 | c.1932C>G | synonymous_variant | 0.16 |
gyrA | 9239 | c.1938C>T | synonymous_variant | 0.15 |
gyrA | 9252 | p.Val651Ile | missense_variant | 0.15 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
fgd1 | 491742 | c.960T>C | synonymous_variant | 1.0 |
mshA | 575833 | c.486C>G | synonymous_variant | 0.14 |
mshA | 575896 | c.549G>C | synonymous_variant | 0.14 |
mshA | 575924 | p.Gly193Trp | missense_variant | 0.14 |
ccsA | 620682 | c.792G>A | synonymous_variant | 0.14 |
ccsA | 620688 | c.798G>C | synonymous_variant | 0.16 |
ccsA | 620710 | p.Val274Met | missense_variant | 0.14 |
rpoB | 759746 | c.-61C>T | upstream_gene_variant | 1.0 |
rpoB | 760283 | c.477G>C | synonymous_variant | 0.18 |
rpoB | 760298 | c.492G>C | synonymous_variant | 0.17 |
rpoB | 760307 | c.501T>C | synonymous_variant | 0.17 |
rpoB | 760310 | c.504G>C | synonymous_variant | 0.16 |
rpoB | 760328 | c.522G>C | synonymous_variant | 0.19 |
rpoB | 760331 | c.525G>C | synonymous_variant | 0.18 |
rpoB | 760340 | c.534G>T | synonymous_variant | 0.2 |
rpoB | 760361 | c.555T>C | synonymous_variant | 0.18 |
rpoB | 760370 | c.564C>G | synonymous_variant | 0.17 |
rpoB | 760563 | p.Arg253Met | missense_variant | 0.14 |
rpoB | 760591 | p.Val262Ala | missense_variant | 0.16 |
rpoB | 760611 | c.805T>C | synonymous_variant | 0.16 |
rpoB | 760634 | c.828T>C | synonymous_variant | 0.15 |
rpoB | 760991 | c.1185G>C | synonymous_variant | 0.14 |
rpoB | 761021 | c.1215G>C | synonymous_variant | 0.15 |
rpoB | 761036 | c.1230G>C | synonymous_variant | 0.15 |
rpoB | 761037 | c.1231T>C | synonymous_variant | 0.15 |
rpoB | 761057 | c.1251G>C | synonymous_variant | 0.19 |
rpoB | 761102 | c.1296A>G | synonymous_variant | 0.17 |
rpoB | 761150 | c.1344A>C | synonymous_variant | 0.16 |
rpoB | 761153 | c.1347G>C | synonymous_variant | 0.15 |
rpoB | 761207 | c.1401C>T | synonymous_variant | 0.15 |
rpoB | 761213 | c.1407G>C | synonymous_variant | 0.16 |
rpoB | 761219 | c.1413G>C | synonymous_variant | 0.17 |
rpoB | 761249 | c.1443A>G | synonymous_variant | 0.19 |
rpoB | 761255 | c.1449T>G | synonymous_variant | 0.2 |
rpoB | 761261 | c.1455G>T | synonymous_variant | 0.19 |
rpoB | 761306 | c.1500C>G | synonymous_variant | 0.17 |
rpoB | 761312 | c.1506G>C | synonymous_variant | 0.18 |
rpoB | 761327 | c.1521A>G | synonymous_variant | 0.16 |
rpoB | 761330 | c.1524G>C | synonymous_variant | 0.15 |
rpoB | 761570 | c.1764T>C | synonymous_variant | 0.15 |
rpoB | 761573 | c.1767C>G | synonymous_variant | 0.15 |
rpoB | 761579 | c.1773G>C | synonymous_variant | 0.15 |
rpoB | 761588 | c.1782C>T | synonymous_variant | 0.14 |
rpoB | 761948 | c.2142G>C | synonymous_variant | 0.16 |
rpoB | 761954 | c.2148C>G | synonymous_variant | 0.17 |
rpoB | 762008 | c.2202C>T | synonymous_variant | 0.15 |
rpoB | 762347 | c.2541T>C | synonymous_variant | 0.15 |
rpoB | 762362 | p.Glu852Asp | missense_variant | 0.15 |
rpoC | 762434 | c.-936T>G | upstream_gene_variant | 1.0 |
rpoC | 762929 | c.-441G>C | upstream_gene_variant | 0.19 |
rpoC | 762989 | c.-381G>C | upstream_gene_variant | 0.19 |
rpoC | 762995 | c.-375G>T | upstream_gene_variant | 0.19 |
rpoC | 763013 | c.-357C>G | upstream_gene_variant | 0.2 |
rpoC | 763028 | c.-342T>C | upstream_gene_variant | 0.17 |
rpoC | 763031 | c.-339T>C | upstream_gene_variant | 1.0 |
rpoC | 763034 | c.-336C>G | upstream_gene_variant | 0.17 |
rpoC | 763040 | c.-330C>G | upstream_gene_variant | 0.18 |
rpoC | 763070 | c.-300T>C | upstream_gene_variant | 0.15 |
rpoC | 763085 | c.-285C>G | upstream_gene_variant | 0.16 |
rpoC | 763190 | c.-180C>T | upstream_gene_variant | 0.15 |
rpoC | 763214 | c.-156T>C | upstream_gene_variant | 0.15 |
rpoC | 763226 | c.-144A>G | upstream_gene_variant | 0.14 |
rpoC | 763546 | c.177A>G | synonymous_variant | 0.15 |
rpoC | 763570 | c.201G>C | synonymous_variant | 0.15 |
rpoC | 763573 | c.204G>C | synonymous_variant | 0.16 |
rpoC | 763594 | c.225C>T | synonymous_variant | 0.19 |
rpoC | 763603 | c.234C>T | synonymous_variant | 0.19 |
rpoC | 763636 | c.267T>C | synonymous_variant | 0.18 |
rpoC | 763717 | c.348T>C | synonymous_variant | 0.15 |
rpoC | 763723 | c.354G>C | synonymous_variant | 0.15 |
rpoC | 763732 | c.363C>G | synonymous_variant | 0.14 |
rpoC | 763741 | c.372C>T | synonymous_variant | 0.18 |
rpoC | 763744 | c.375G>C | synonymous_variant | 0.17 |
rpoC | 763765 | c.396T>C | synonymous_variant | 0.19 |
rpoC | 763774 | c.405G>C | synonymous_variant | 0.18 |
rpoC | 763807 | c.438T>C | synonymous_variant | 0.19 |
rpoC | 763816 | c.447C>G | synonymous_variant | 0.18 |
rpoC | 763825 | c.456G>A | synonymous_variant | 0.17 |
rpoC | 763835 | p.Ala156Met | missense_variant | 0.16 |
rpoC | 763853 | p.Val162Ile | missense_variant | 0.17 |
rpoC | 763858 | c.489A>G | synonymous_variant | 0.16 |
rpoC | 764489 | c.1120C>T | synonymous_variant | 0.15 |
rpoC | 764497 | c.1128A>G | synonymous_variant | 0.15 |
rpoC | 764510 | c.1141C>T | synonymous_variant | 0.15 |
rpoC | 764521 | c.1152T>C | synonymous_variant | 0.14 |
rpoC | 764527 | c.1158C>T | synonymous_variant | 0.17 |
rpoC | 764554 | c.1185C>T | synonymous_variant | 0.15 |
rpoC | 764560 | c.1191T>C | synonymous_variant | 0.17 |
rpoC | 764566 | c.1197C>G | synonymous_variant | 0.17 |
rpoC | 764575 | c.1206T>G | synonymous_variant | 0.18 |
rpoC | 764581 | c.1212T>C | synonymous_variant | 0.19 |
rpoC | 764593 | c.1224C>T | synonymous_variant | 0.18 |
rpoC | 764611 | c.1242G>T | synonymous_variant | 0.18 |
rpoC | 764651 | p.Ser428Thr | missense_variant | 0.14 |
rpoC | 764995 | c.1626C>G | synonymous_variant | 0.15 |
rpoC | 765529 | c.2160C>T | synonymous_variant | 0.16 |
rpoC | 765541 | c.2172C>G | synonymous_variant | 0.17 |
rpoC | 765553 | c.2184C>T | synonymous_variant | 0.18 |
rpoC | 765556 | c.2187G>C | synonymous_variant | 0.18 |
rpoC | 765559 | c.2190G>C | synonymous_variant | 0.18 |
rpoC | 765580 | c.2211G>C | synonymous_variant | 0.17 |
rpoC | 765613 | p.His748Gln | missense_variant | 0.18 |
rpoC | 765625 | c.2256C>G | synonymous_variant | 0.16 |
rpoC | 765631 | p.Asp754Glu | missense_variant | 0.16 |
rpoC | 765700 | c.2331T>C | synonymous_variant | 0.14 |
rpoC | 765883 | c.2514C>G | synonymous_variant | 0.15 |
rpoC | 765886 | c.2517C>G | synonymous_variant | 0.16 |
rpoC | 765892 | c.2523T>C | synonymous_variant | 0.15 |
rpoC | 766054 | c.2685C>G | synonymous_variant | 0.15 |
rpoC | 766483 | c.3114G>C | synonymous_variant | 0.15 |
rpoC | 766484 | p.Val1039Ile | missense_variant | 0.15 |
rpoC | 766492 | c.3123T>C | synonymous_variant | 0.15 |
rpoC | 766738 | c.3369G>C | synonymous_variant | 0.14 |
rpoC | 766747 | c.3378C>T | synonymous_variant | 0.13 |
rpoC | 766765 | c.3396A>C | synonymous_variant | 0.16 |
rpoC | 766774 | c.3405T>C | synonymous_variant | 0.19 |
rpoC | 766801 | c.3432C>G | synonymous_variant | 0.18 |
rpoC | 766804 | c.3435A>G | synonymous_variant | 0.19 |
rpoC | 766861 | c.3492G>C | synonymous_variant | 0.17 |
rpoC | 766864 | c.3495G>C | synonymous_variant | 0.16 |
rpoC | 766867 | c.3498C>G | synonymous_variant | 0.15 |
rpoC | 766882 | c.3513C>T | synonymous_variant | 0.16 |
rpoC | 766933 | c.3564A>G | synonymous_variant | 0.17 |
rpoC | 766945 | c.3576A>G | synonymous_variant | 0.14 |
rpoC | 766963 | c.3594T>C | synonymous_variant | 0.17 |
rpoC | 766972 | c.3603G>C | synonymous_variant | 0.17 |
rpoC | 766987 | c.3618G>C | synonymous_variant | 0.18 |
rpoC | 766996 | c.3627C>T | synonymous_variant | 0.18 |
rpoC | 767009 | c.3640_3642delTCGinsAGC | synonymous_variant | 0.15 |
rpoC | 767014 | c.3645G>C | synonymous_variant | 0.15 |
rpoC | 767098 | c.3729T>C | synonymous_variant | 0.14 |
rpoC | 767119 | c.3750A>G | synonymous_variant | 0.15 |
rpoC | 767134 | c.3765C>A | synonymous_variant | 0.15 |
rpoC | 767158 | c.3789T>C | synonymous_variant | 0.16 |
rpoC | 767206 | c.3837C>G | synonymous_variant | 0.15 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
mmpL5 | 776100 | p.Thr794Ile | missense_variant | 1.0 |
mmpL5 | 776181 | p.Asp767Ala | missense_variant | 1.0 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
rpsL | 781655 | c.96T>C | synonymous_variant | 0.15 |
rpsL | 781700 | c.141G>C | synonymous_variant | 0.19 |
rpsL | 781703 | c.144G>T | synonymous_variant | 0.2 |
rpsL | 781715 | c.156T>C | synonymous_variant | 0.15 |
rpsL | 781736 | c.177T>C | synonymous_variant | 0.17 |
rpsL | 781742 | c.183C>T | synonymous_variant | 0.14 |
rpsL | 781748 | c.189C>G | synonymous_variant | 0.15 |
rpsL | 781754 | c.195G>C | synonymous_variant | 0.16 |
rpsL | 781760 | c.201T>C | synonymous_variant | 0.16 |
rpsL | 781772 | c.213C>A | synonymous_variant | 0.15 |
rpsL | 781832 | c.273T>C | synonymous_variant | 0.16 |
rpsL | 781838 | c.279G>C | synonymous_variant | 0.16 |
rpsL | 781841 | c.282C>G | synonymous_variant | 0.16 |
rpsL | 781898 | c.339A>T | synonymous_variant | 0.15 |
rpsL | 781916 | c.357T>C | synonymous_variant | 0.15 |
rpsL | 781929 | p.Gly124Ser | missense_variant | 0.14 |
rplC | 800612 | c.-197A>G | upstream_gene_variant | 0.19 |
rplC | 800618 | c.-191T>C | upstream_gene_variant | 0.22 |
rplC | 800627 | c.-182C>T | upstream_gene_variant | 0.21 |
rplC | 800648 | c.-161A>T | upstream_gene_variant | 0.18 |
rplC | 800654 | c.-155T>C | upstream_gene_variant | 0.18 |
rplC | 800693 | c.-116A>G | upstream_gene_variant | 0.19 |
rplC | 800703 | c.-106T>C | upstream_gene_variant | 0.2 |
rplC | 800715 | c.-94A>C | upstream_gene_variant | 0.19 |
rplC | 800720 | c.-89T>C | upstream_gene_variant | 0.18 |
rplC | 800723 | c.-86C>G | upstream_gene_variant | 0.19 |
rplC | 800747 | c.-62C>G | upstream_gene_variant | 0.16 |
fbiC | 1303905 | c.975G>C | synonymous_variant | 0.14 |
fbiC | 1303914 | c.984C>G | synonymous_variant | 0.16 |
fbiC | 1303920 | c.990C>T | synonymous_variant | 0.16 |
fbiC | 1303944 | c.1014G>C | synonymous_variant | 0.15 |
fbiC | 1303947 | c.1017T>G | synonymous_variant | 0.15 |
fbiC | 1303948 | p.Gly340Arg | missense_variant | 0.15 |
fbiC | 1303953 | p.Asp341Glu | missense_variant | 0.15 |
fbiC | 1303956 | c.1026A>G | synonymous_variant | 0.15 |
fbiC | 1303961 | p.Arg344Leu | missense_variant | 0.15 |
fbiC | 1303971 | c.1041T>C | synonymous_variant | 0.16 |
fbiC | 1303980 | c.1050G>A | synonymous_variant | 0.15 |
fbiC | 1304004 | c.1074A>G | synonymous_variant | 0.15 |
fbiC | 1304008 | c.1078T>C | synonymous_variant | 0.15 |
fbiC | 1304163 | c.1233G>C | synonymous_variant | 0.14 |
fbiC | 1304169 | c.1239T>C | synonymous_variant | 0.14 |
fbiC | 1304174 | p.Val415Ala | missense_variant | 0.14 |
fbiC | 1304727 | c.1797A>G | synonymous_variant | 0.14 |
fbiC | 1304757 | c.1827A>G | synonymous_variant | 0.15 |
fbiC | 1304778 | c.1848T>C | synonymous_variant | 0.16 |
fbiC | 1304784 | c.1854T>C | synonymous_variant | 0.16 |
fbiC | 1304787 | c.1857T>G | synonymous_variant | 0.17 |
fbiC | 1304891 | p.Ile654Thr | missense_variant | 0.14 |
fbiC | 1304893 | p.Gly655Ser | missense_variant | 0.14 |
fbiC | 1304907 | c.1977C>G | synonymous_variant | 0.16 |
fbiC | 1304910 | c.1980G>C | synonymous_variant | 0.14 |
fbiC | 1304916 | c.1986T>C | synonymous_variant | 0.15 |
fbiC | 1304928 | c.1998T>C | synonymous_variant | 0.15 |
fbiC | 1304958 | c.2028T>G | synonymous_variant | 0.14 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrs | 1472300 | n.455C>T | non_coding_transcript_exon_variant | 0.13 |
rrs | 1472969 | n.1124A>G | non_coding_transcript_exon_variant | 0.19 |
rrs | 1472970 | n.1125C>G | non_coding_transcript_exon_variant | 0.19 |
rrs | 1472977 | n.1132G>C | non_coding_transcript_exon_variant | 0.19 |
rrs | 1472978 | n.1133T>C | non_coding_transcript_exon_variant | 0.18 |
rrs | 1473105 | n.1260G>A | non_coding_transcript_exon_variant | 0.14 |
rrs | 1473166 | n.1321G>A | non_coding_transcript_exon_variant | 0.14 |
rrs | 1473290 | n.1445C>T | non_coding_transcript_exon_variant | 0.17 |
rrl | 1473756 | n.99G>A | non_coding_transcript_exon_variant | 0.21 |
rrl | 1473758 | n.101G>T | non_coding_transcript_exon_variant | 0.21 |
rrl | 1473806 | n.149C>T | non_coding_transcript_exon_variant | 0.22 |
rrl | 1473877 | n.220G>A | non_coding_transcript_exon_variant | 0.17 |
rrl | 1473898 | n.241C>T | non_coding_transcript_exon_variant | 0.21 |
rrl | 1473899 | n.242A>C | non_coding_transcript_exon_variant | 0.2 |
rrl | 1473938 | n.281G>A | non_coding_transcript_exon_variant | 0.25 |
rrl | 1473939 | n.282C>T | non_coding_transcript_exon_variant | 0.25 |
rrl | 1473943 | n.286G>T | non_coding_transcript_exon_variant | 0.26 |
rrl | 1473981 | n.324G>T | non_coding_transcript_exon_variant | 0.21 |
rrl | 1473986 | n.329T>C | non_coding_transcript_exon_variant | 0.21 |
rrl | 1473987 | n.330G>A | non_coding_transcript_exon_variant | 0.23 |
rrl | 1473995 | n.338G>T | non_coding_transcript_exon_variant | 0.22 |
rrl | 1474001 | n.344C>T | non_coding_transcript_exon_variant | 0.19 |
rrl | 1474009 | n.352A>G | non_coding_transcript_exon_variant | 0.19 |
rrl | 1474012 | n.355C>T | non_coding_transcript_exon_variant | 0.21 |
rrl | 1474044 | n.387C>T | non_coding_transcript_exon_variant | 0.19 |
rrl | 1474054 | n.397T>C | non_coding_transcript_exon_variant | 0.21 |
rrl | 1474091 | n.434C>T | non_coding_transcript_exon_variant | 0.2 |
rrl | 1474093 | n.436G>T | non_coding_transcript_exon_variant | 0.2 |
rrl | 1474099 | n.442G>A | non_coding_transcript_exon_variant | 0.2 |
rrl | 1474103 | n.446A>T | non_coding_transcript_exon_variant | 0.19 |
rrl | 1474140 | n.483C>T | non_coding_transcript_exon_variant | 0.18 |
rrl | 1474151 | n.494C>T | non_coding_transcript_exon_variant | 0.19 |
rrl | 1474181 | n.524C>T | non_coding_transcript_exon_variant | 0.16 |
rrl | 1474639 | n.982G>A | non_coding_transcript_exon_variant | 0.14 |
rrl | 1474794 | n.1137C>T | non_coding_transcript_exon_variant | 0.18 |
rrl | 1474812 | n.1155G>A | non_coding_transcript_exon_variant | 0.17 |
rrl | 1474831 | n.1174A>G | non_coding_transcript_exon_variant | 0.15 |
rrl | 1474904 | n.1247G>A | non_coding_transcript_exon_variant | 0.19 |
rrl | 1474956 | n.1299C>T | non_coding_transcript_exon_variant | 0.23 |
rrl | 1474961 | n.1304T>G | non_coding_transcript_exon_variant | 0.2 |
rrl | 1474963 | n.1306G>A | non_coding_transcript_exon_variant | 0.2 |
rrl | 1474964 | n.1307T>C | non_coding_transcript_exon_variant | 0.2 |
rrl | 1474970 | n.1313G>A | non_coding_transcript_exon_variant | 0.22 |
rrl | 1475006 | n.1349A>T | non_coding_transcript_exon_variant | 0.24 |
rrl | 1475028 | n.1371G>A | non_coding_transcript_exon_variant | 0.24 |
rrl | 1475061 | n.1404C>T | non_coding_transcript_exon_variant | 0.21 |
rrl | 1475088 | n.1431A>T | non_coding_transcript_exon_variant | 0.27 |
rrl | 1475199 | n.1542G>A | non_coding_transcript_exon_variant | 0.18 |
rrl | 1475206 | n.1549C>T | non_coding_transcript_exon_variant | 0.14 |
rrl | 1475291 | n.1634A>C | non_coding_transcript_exon_variant | 0.18 |
rrl | 1475315 | n.1658A>T | non_coding_transcript_exon_variant | 0.2 |
rrl | 1475355 | n.1698C>T | non_coding_transcript_exon_variant | 0.2 |
rrl | 1475369 | n.1712G>T | non_coding_transcript_exon_variant | 0.18 |
rrl | 1475402 | n.1745C>T | non_coding_transcript_exon_variant | 0.18 |
rrl | 1475419 | n.1762C>T | non_coding_transcript_exon_variant | 0.19 |
rrl | 1475483 | n.1826C>T | non_coding_transcript_exon_variant | 0.22 |
rrl | 1475505 | n.1848G>A | non_coding_transcript_exon_variant | 0.2 |
rrl | 1475526 | n.1869C>A | non_coding_transcript_exon_variant | 0.23 |
rrl | 1475573 | n.1916G>A | non_coding_transcript_exon_variant | 0.19 |
rrl | 1475599 | n.1942A>G | non_coding_transcript_exon_variant | 0.21 |
rrl | 1475608 | n.1951T>C | non_coding_transcript_exon_variant | 0.21 |
rrl | 1475642 | n.1985T>C | non_coding_transcript_exon_variant | 0.18 |
rrl | 1475657 | n.2000A>G | non_coding_transcript_exon_variant | 0.17 |
rrl | 1475659 | n.2002G>T | non_coding_transcript_exon_variant | 0.16 |
rrl | 1475881 | n.2224T>C | non_coding_transcript_exon_variant | 0.15 |
rrl | 1476086 | n.2429G>A | non_coding_transcript_exon_variant | 0.15 |
rrl | 1476089 | n.2432T>C | non_coding_transcript_exon_variant | 0.16 |
rrl | 1476224 | n.2567A>G | non_coding_transcript_exon_variant | 0.15 |
rrl | 1476281 | n.2624T>C | non_coding_transcript_exon_variant | 0.18 |
rrl | 1476297 | n.2640C>T | non_coding_transcript_exon_variant | 0.21 |
rrl | 1476299 | n.2642C>T | non_coding_transcript_exon_variant | 0.21 |
rrl | 1476583 | n.2926G>A | non_coding_transcript_exon_variant | 0.16 |
rrl | 1476584 | n.2927C>T | non_coding_transcript_exon_variant | 0.16 |
rrl | 1476594 | n.2937C>T | non_coding_transcript_exon_variant | 0.17 |
rrl | 1476597 | n.2940G>A | non_coding_transcript_exon_variant | 0.17 |
rrl | 1476603 | n.2946G>A | non_coding_transcript_exon_variant | 0.15 |
rrl | 1476608 | n.2951C>G | non_coding_transcript_exon_variant | 0.15 |
rrl | 1476628 | n.2971T>A | non_coding_transcript_exon_variant | 0.16 |
inhA | 1673922 | c.-280T>C | upstream_gene_variant | 0.15 |
fabG1 | 1673941 | p.Ala168Ser | missense_variant | 0.16 |
inhA | 1673961 | c.-241A>C | upstream_gene_variant | 0.15 |
inhA | 1673985 | c.-217C>G | upstream_gene_variant | 0.16 |
fabG1 | 1674006 | p.Asp189Glu | missense_variant | 0.15 |
inhA | 1674015 | c.-187C>T | upstream_gene_variant | 0.15 |
inhA | 1674542 | p.Ala114Glu | missense_variant | 0.14 |
inhA | 1674549 | c.348G>C | synonymous_variant | 0.15 |
inhA | 1674561 | c.360C>T | synonymous_variant | 0.14 |
inhA | 1674582 | c.381T>C | synonymous_variant | 0.15 |
rpsA | 1833787 | c.246C>G | synonymous_variant | 0.15 |
rpsA | 1833790 | c.249T>C | synonymous_variant | 0.15 |
rpsA | 1833802 | c.261A>G | synonymous_variant | 0.17 |
rpsA | 1833811 | c.270G>T | synonymous_variant | 0.17 |
rpsA | 1833838 | c.297G>C | synonymous_variant | 0.22 |
rpsA | 1833841 | c.300C>G | synonymous_variant | 0.23 |
rpsA | 1833847 | c.306C>G | synonymous_variant | 0.23 |
rpsA | 1833856 | c.315A>G | synonymous_variant | 0.23 |
rpsA | 1833874 | c.333T>C | synonymous_variant | 0.19 |
rpsA | 1833928 | c.387G>C | synonymous_variant | 0.16 |
rpsA | 1833940 | c.399C>G | synonymous_variant | 0.16 |
rpsA | 1834333 | c.792C>T | synonymous_variant | 0.17 |
rpsA | 1834348 | c.807T>C | synonymous_variant | 0.17 |
rpsA | 1834366 | c.825A>G | synonymous_variant | 0.18 |
rpsA | 1834396 | c.855G>C | synonymous_variant | 0.15 |
rpsA | 1834411 | c.870T>C | synonymous_variant | 0.15 |
rpsA | 1834417 | c.876G>C | synonymous_variant | 0.15 |
rpsA | 1834423 | c.882G>C | synonymous_variant | 0.16 |
rpsA | 1834435 | c.894G>C | synonymous_variant | 0.18 |
rpsA | 1834451 | c.910T>C | synonymous_variant | 0.15 |
rpsA | 1834465 | c.924T>C | synonymous_variant | 0.16 |
rpsA | 1834468 | c.927A>G | synonymous_variant | 0.18 |
rpsA | 1834489 | c.948T>C | synonymous_variant | 0.2 |
rpsA | 1834528 | c.987T>C | synonymous_variant | 0.2 |
rpsA | 1834540 | c.999G>C | synonymous_variant | 0.19 |
rpsA | 1834546 | c.1005T>C | synonymous_variant | 0.18 |
rpsA | 1834606 | c.1065C>G | synonymous_variant | 0.19 |
rpsA | 1834609 | c.1068T>C | synonymous_variant | 0.18 |
rpsA | 1834618 | c.1077G>C | synonymous_variant | 0.17 |
rpsA | 1834633 | c.1092A>G | synonymous_variant | 0.18 |
rpsA | 1834639 | c.1098T>C | synonymous_variant | 0.19 |
rpsA | 1834654 | p.Glu371Asp | missense_variant | 0.2 |
rpsA | 1834690 | c.1149T>C | synonymous_variant | 0.21 |
rpsA | 1834732 | c.1191T>C | synonymous_variant | 0.14 |
rpsA | 1834733 | p.Ala398Ser | missense_variant | 0.14 |
rpsA | 1834738 | c.1197A>G | synonymous_variant | 0.15 |
rpsA | 1834753 | c.1212T>C | synonymous_variant | 0.15 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
katG | 2154724 | p.Arg463Leu | missense_variant | 1.0 |
PPE35 | 2167926 | p.Leu896Ser | missense_variant | 1.0 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 0.98 |
pncA | 2289365 | c.-125delC | upstream_gene_variant | 1.0 |
kasA | 2517950 | c.-165C>G | upstream_gene_variant | 0.15 |
kasA | 2518506 | p.Ala131Glu | missense_variant | 0.14 |
kasA | 2518519 | c.405G>C | synonymous_variant | 0.15 |
kasA | 2518528 | c.414C>G | synonymous_variant | 0.16 |
kasA | 2518540 | c.426T>C | synonymous_variant | 0.16 |
kasA | 2518561 | c.447T>C | synonymous_variant | 0.15 |
kasA | 2518795 | c.681C>G | synonymous_variant | 0.14 |
ahpC | 2726105 | c.-88G>A | upstream_gene_variant | 1.0 |
folC | 2747289 | p.Pro104Ala | missense_variant | 0.15 |
folC | 2747290 | c.309A>G | synonymous_variant | 0.15 |
folC | 2747293 | c.306G>A | synonymous_variant | 0.15 |
folC | 2747302 | c.297A>C | synonymous_variant | 0.15 |
folC | 2747314 | c.285A>C | synonymous_variant | 0.16 |
folC | 2747317 | c.282C>G | synonymous_variant | 0.16 |
folC | 2747343 | p.Val86Ile | missense_variant | 0.16 |
thyX | 3067316 | c.630A>G | synonymous_variant | 0.15 |
thyX | 3067325 | c.621A>G | synonymous_variant | 0.15 |
thyX | 3067328 | c.618G>A | synonymous_variant | 0.16 |
thyX | 3067349 | c.597G>C | synonymous_variant | 0.16 |
thyX | 3067439 | c.507A>G | synonymous_variant | 0.15 |
thyX | 3067445 | c.501C>G | synonymous_variant | 0.15 |
thyX | 3067475 | c.471A>G | synonymous_variant | 0.15 |
thyX | 3067490 | c.456C>G | synonymous_variant | 0.19 |
thyX | 3067493 | c.453A>G | synonymous_variant | 0.2 |
thyX | 3067515 | p.Ser144Thr | missense_variant | 0.2 |
thyX | 3067530 | p.Ala139Ser | missense_variant | 0.22 |
thyX | 3067545 | p.Glu134Ala | missense_variant | 0.2 |
thyX | 3067549 | p.Thr133Ala | missense_variant | 0.21 |
thyX | 3067556 | p.His130Gln | missense_variant | 0.18 |
thyX | 3067559 | c.387C>G | synonymous_variant | 0.18 |
thyX | 3067565 | p.Asp127Glu | missense_variant | 0.18 |
thyX | 3067570 | p.Ala126Pro | missense_variant | 0.18 |
thyX | 3067577 | c.369G>A | synonymous_variant | 0.18 |
ald | 3086788 | c.-32T>C | upstream_gene_variant | 1.0 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 1.0 |
alr | 3841590 | c.-170G>A | upstream_gene_variant | 0.99 |
rpoA | 3877571 | p.Pro313Ala | missense_variant | 0.14 |
rpoA | 3877587 | c.921A>G | synonymous_variant | 0.17 |
rpoA | 3877613 | p.Ile299Val | missense_variant | 0.18 |
rpoA | 3877656 | c.852T>G | synonymous_variant | 0.16 |
rpoA | 3877668 | c.840A>G | synonymous_variant | 0.15 |
rpoA | 3877686 | c.822A>G | synonymous_variant | 0.15 |
rpoA | 3877962 | c.546G>T | synonymous_variant | 0.16 |
rpoA | 3877986 | c.522G>C | synonymous_variant | 0.16 |
rpoA | 3877989 | c.519A>G | synonymous_variant | 0.16 |
rpoA | 3878001 | c.507A>G | synonymous_variant | 0.14 |
rpoA | 3878247 | c.261G>C | synonymous_variant | 0.15 |
rpoA | 3878271 | c.237T>C | synonymous_variant | 0.16 |
rpoA | 3878284 | p.Glu75Ala | missense_variant | 0.16 |
rpoA | 3878313 | c.195G>C | synonymous_variant | 0.15 |
rpoA | 3878331 | c.177A>G | synonymous_variant | 0.14 |
rpoA | 3878340 | c.168C>T | synonymous_variant | 0.14 |
rpoA | 3878346 | c.162T>C | synonymous_variant | 0.16 |
rpoA | 3878364 | c.144A>T | synonymous_variant | 0.17 |
rpoA | 3878367 | c.141C>G | synonymous_variant | 0.16 |
rpoA | 3878376 | c.132G>C | synonymous_variant | 0.18 |
rpoA | 3878385 | c.123C>G | synonymous_variant | 0.14 |
rpoA | 3878388 | c.120C>G | synonymous_variant | 0.16 |
rpoA | 3878391 | c.117T>C | synonymous_variant | 0.16 |
rpoA | 3878415 | c.93C>T | synonymous_variant | 0.17 |
rpoA | 3878424 | c.84G>C | synonymous_variant | 0.16 |
rpoA | 3878436 | c.72A>G | synonymous_variant | 0.14 |
clpC1 | 4039022 | c.1683A>G | synonymous_variant | 0.14 |
clpC1 | 4039064 | c.1641C>T | synonymous_variant | 0.17 |
clpC1 | 4039097 | c.1608G>C | synonymous_variant | 0.2 |
clpC1 | 4039103 | c.1602T>C | synonymous_variant | 0.19 |
clpC1 | 4039106 | c.1599G>C | synonymous_variant | 0.19 |
clpC1 | 4039112 | c.1593C>G | synonymous_variant | 0.2 |
clpC1 | 4039121 | c.1584T>C | synonymous_variant | 0.21 |
clpC1 | 4039142 | c.1563A>G | synonymous_variant | 0.21 |
clpC1 | 4039145 | c.1560G>C | synonymous_variant | 0.21 |
clpC1 | 4039169 | p.Glu512Asp | missense_variant | 0.21 |
clpC1 | 4039172 | c.1533A>G | synonymous_variant | 0.19 |
clpC1 | 4039178 | c.1527G>C | synonymous_variant | 0.19 |
clpC1 | 4039183 | c.1522T>C | synonymous_variant | 0.18 |
clpC1 | 4039186 | c.1519C>T | synonymous_variant | 0.17 |
clpC1 | 4039226 | c.1479T>C | synonymous_variant | 0.14 |
clpC1 | 4039319 | c.1386T>C | synonymous_variant | 0.14 |
clpC1 | 4039322 | c.1383T>C | synonymous_variant | 0.15 |
clpC1 | 4039328 | c.1377A>C | synonymous_variant | 0.15 |
clpC1 | 4039331 | c.1374C>G | synonymous_variant | 0.15 |
clpC1 | 4039338 | p.Thr456Lys | missense_variant | 0.14 |
clpC1 | 4039349 | c.1356C>T | synonymous_variant | 0.15 |
clpC1 | 4039352 | c.1353C>G | synonymous_variant | 0.16 |
clpC1 | 4039364 | c.1341C>G | synonymous_variant | 0.17 |
clpC1 | 4039409 | c.1296T>C | synonymous_variant | 0.15 |
clpC1 | 4039412 | c.1293T>G | synonymous_variant | 0.15 |
clpC1 | 4039415 | p.Glu430Asp | missense_variant | 0.14 |
clpC1 | 4039517 | c.1188C>G | synonymous_variant | 0.15 |
embC | 4242075 | p.Arg738Gln | missense_variant | 1.0 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
aftB | 4268719 | p.Asn40Asp | missense_variant | 0.98 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |
gid | 4407588 | c.615A>G | synonymous_variant | 1.0 |