EBG00000313339 - n.1371G>A
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
7 Sensitive
2 RR-TB
9 HR-TB
18 MDR-TB
2 Pre-XDR-TB
3 XDR-TB
29 Other
lineage Counts
| lineage | Count |
|---|---|
| 6 | |
| lineage4.9 | 6 |
| lineage4.6.2.2 | 4 |
| lineage5.2 | 2 |
| lineage2.2.1.1 | 1 |
| M.canetti;lineage4.2 | 1 |
| La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 | 2 |
| lineage4.8 | 4 |
| lineage4.3.4.1 | 1 |
| M.canetti;lineage2.2.2;lineage6.2 | 2 |
| lineage3 | 4 |
| lineage4.1.2.1 | 3 |
| lineage4 | 1 |
| lineage4.1.1.3 | 2 |
| La1.7.1;M.canetti;lineage4.2;lineage4.9;lineage6.2;lineage6.3 | 1 |
| La3;lineage4.9 | 3 |
| lineage2.2.1 | 1 |
| La3;lineage2.2.1 | 1 |
| La1.7;lineage4.9 | 2 |
| La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.8.2;lineage4.9;lineage7 | 1 |
| La1.2 | 1 |
| lineage4.9;lineage6.3 | 1 |
| M.canetti;lineage2.2 | 2 |
| lineage2.1;lineage4.9 | 1 |
| La3;lineage4.1.2.1;lineage4.2.1;lineage4.5;lineage4.9;lineage6.1.1;lineage6.3.2 | 1 |
| La1.7 | 1 |
| lineage2.1;lineage4.9;lineage6.3 | 1 |
| lineage4.6.1.2 | 1 |
| La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 | 1 |
| M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.9 | 1 |
| lineage2.2.1;lineage3 | 1 |
| La3;M.canetti;lineage2;lineage4.2;lineage4.3 | 1 |
| La1.7;lineage4.2 | 1 |
| La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage7 | 1 |
| lineage2.2.1.2 | 1 |
| lineage2.2 | 1 |
| La1.6;La3;M.canetti;lineage4.2.2 | 1 |
| La1.7.1;M.canetti;lineage4.2;lineage6.2;lineage6.3 | 1 |
| lineage4.3.2.1 | 2 |
| lineage4.1 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 70 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR12416824 | HR-TB | None | SRR12416840 | MDR-TB | lineage4.9 | None | ERR9119525 | MDR-TB | lineage4.6.2.2 | None | ERR9119500 | MDR-TB | lineage5.2 | None | SRR1181091 | Other | lineage2.2.1.1 | None | ERR9119502 | MDR-TB | lineage4.6.2.2 | None | SRR28119843 | Sensitive | lineage4.9 | None | ERR403298 | MDR-TB | M.canetti;lineage4.2 | None | ERR9786843 | Other | None | ERR234659 | Other | None | SRR3675502 | Sensitive | lineage4.9 | None | ERR2026698 | HR-TB | La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 | None | SRR28119823 | Sensitive | lineage4.9 | None | SRR8206626 | Sensitive | lineage4.8 | None | ERR4872096 | MDR-TB | lineage4.6.2.2 | None | ERR12015086 | RR-TB | lineage4.8 | None | ERR1035297 | MDR-TB | lineage4.3.4.1 | br | ERR4797201 | Other | None | ERR1873492 | HR-TB | M.canetti;lineage2.2.2;lineage6.2 | None | ERR4797588 | MDR-TB | lineage3 | None | ERR553132 | MDR-TB | lineage4.1.2.1 | None | ERR4872119 | MDR-TB | lineage4.6.2.2 | None | ERR9786525 | Other | lineage4 | None | ERR11466044 | Other | lineage4.1.1.3 | None | ERR2026696 | MDR-TB | La1.7.1;M.canetti;lineage4.2;lineage4.9;lineage6.2;lineage6.3 | None | SRR28119827 | Other | La3;lineage4.9 | None | SRR6832787 | Sensitive | lineage2.2.1 | None | SRR26937071 | MDR-TB | La3;lineage2.2.1 | None | SRR3675488 | Other | La1.7;lineage4.9 | None | SRR5341418 | Other | La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.8.2;lineage4.9;lineage7 | None | SRR23961549 | Other | La1.2 | None | SRR6046225 | Other | lineage4.9;lineage6.3 | None | ERR7911670 | XDR-TB | M.canetti;lineage2.2 | None | SRR5341333 | Other | lineage2.1;lineage4.9 | None | ERR4831545 | XDR-TB | M.canetti;lineage2.2 | None | ERR1034652 | Other | La3;lineage4.1.2.1;lineage4.2.1;lineage4.5;lineage4.9;lineage6.1.1;lineage6.3.2 | None | SRR3675222 | Other | La1.7 | None | SRR3675508 | Other | lineage2.1;lineage4.9;lineage6.3 | None | ERR2124083 | HR-TB | lineage4.6.1.2 | None | ERR2026697 | HR-TB | La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 | None | ERR736863 | HR-TB | La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | ERR1035294 | MDR-TB | lineage4.1.2.1 | br | SRR3675248 | Other | lineage4.9 | None | ERR4872094 | MDR-TB | lineage5.2 | None | ERR1035162 | Other | M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.9 | None | ERR9786656 | Sensitive | lineage4.1.2.1 | None | SRR25827497 | XDR-TB | lineage2.2.1;lineage3 | None | SRR5341332 | Pre-XDR-TB | lineage3 | None | ERR158583 | MDR-TB | La3;M.canetti;lineage2;lineage4.2;lineage4.3 | None | SRR23961559 | Other | La1.7;lineage4.2 | None | SRR25827682 | Other | None | ERR4829046 | Sensitive | lineage4.8 | it | ERR133986 | Other | La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage7 | None | ERR12015084 | Other | lineage4.8 | None | ERR11252736 | Other | lineage4.9 | None | ERR4797054 | Pre-XDR-TB | lineage2.2.1.2 | None | ERR4831546 | HR-TB | M.canetti;lineage2.2.2;lineage6.2 | None | SRR1183049 | RR-TB | lineage2.2 | None | SRR11662696 | MDR-TB | La1.6;La3;M.canetti;lineage4.2.2 | None | SRR26399973 | Other | La3;lineage4.9 | None | ERR2026695 | MDR-TB | La1.7.1;M.canetti;lineage4.2;lineage6.2;lineage6.3 | None | SRR3675492 | Other | La1.7;lineage4.9 | None | SRR12708407 | HR-TB | lineage4.3.2.1 | None | ERR8975532 | HR-TB | lineage4.3.2.1 | None | SRR29016901 | Other | La3;lineage4.9 | None | ERR4800341 | Other | None | SAMEA2533358 | MDR-TB | lineage4.1.1.3 | None | ERR9786526 | Other | lineage4.1 | None | ERR9896144 | Other | lineage3 | None | ERR990545 | Other | lineage3 | None |
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