ERR5311082
|
MDR-TB
|
M.canetti;lineage2.1;lineage4.1.4;lineage4.9
|
None
|
SRR10808805
|
Other
|
La1;lineage4.9
|
None
|
SRR6458423
|
HR-TB
|
lineage2.2.1
|
None
|
SRR6511621
|
Sensitive
|
lineage4.9
|
None
|
SRR20969542
|
Other
|
lineage4.4.2
|
None
|
SRR3675524
|
Other
|
lineage4.9;lineage6.3
|
None
|
ERR278594
|
HR-TB
|
lineage2.1;lineage4.9
|
None
|
ERR2229143
|
RR-TB
|
lineage4.9
|
None
|
ERR176779
|
HR-TB
|
lineage4.9
|
None
|
ERR4811311
|
Other
|
lineage2.1;lineage4.9;lineage6.3
|
None
|
SRR7535086
|
Other
|
|
None
|
SRR23961542
|
Other
|
La1;lineage4.9
|
None
|
SRR5341267
|
Pre-XDR-TB
|
lineage3
|
None
|
ERR990545
|
Other
|
lineage3
|
None
|
ERR11465025
|
Other
|
lineage4.1.1.3
|
None
|
SRR1172885
|
HR-TB
|
lineage4.9
|
None
|
ERR4797201
|
Other
|
lineage1.2.2.2
|
None
|
SRR14802079
|
MDR-TB
|
lineage4.2.1
|
None
|
ERR4800341
|
Other
|
lineage3
|
None
|
ERR2446144
|
Other
|
lineage3
|
nl
|
SRR5341453
|
Other
|
lineage4.9
|
None
|
SRR1172728
|
RR-TB
|
La3
|
None
|
ERR971389
|
Sensitive
|
lineage4.9
|
None
|
ERR11465232
|
Sensitive
|
lineage4.1.2.1
|
None
|
SRR3675518
|
MDR-TB
|
M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3
|
None
|
SRR12416842
|
HR-TB
|
lineage4.9
|
None
|
ERR926164
|
Other
|
lineage4.9
|
None
|
ERR1063849
|
HR-TB
|
lineage4.9
|
None
|
ERR9786611
|
HR-TB
|
lineage4.1.3
|
None
|
SRR1172817
|
Other
|
La3
|
None
|
SRR1173400
|
Other
|
lineage4.9
|
None
|
SRR1180172
|
Other
|
lineage2.2.1
|
None
|
SRR6045158
|
Other
|
lineage4.9
|
None
|
ERR702404
|
HR-TB
|
lineage2.1;lineage4.9;lineage6.3
|
None
|
SRR5341302
|
Other
|
La3;lineage2.1;lineage4.9
|
None
|
SRR5341467
|
Other
|
lineage4.9
|
None
|
SAMN02414850
|
Other
|
lineage4.1.2.1
|
None
|
ERR970413
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR1184346
|
HR-TB
|
lineage3.1
|
None
|
ERR736834
|
Sensitive
|
lineage4.9
|
None
|
ERR8976043
|
HR-TB
|
lineage2.1;lineage2.2;lineage6.3
|
None
|
SRR5341422
|
HR-TB
|
La1.7;lineage4.9;lineage7
|
None
|
SRR23961559
|
Other
|
La1.7;lineage4.2
|
None
|
SRR3675490
|
Other
|
lineage2.1;lineage4.9;lineage6.3
|
None
|
SRR23961549
|
Other
|
La1.2
|
None
|
SRR3675311
|
Other
|
lineage4.9
|
None
|
SRR7496472
|
Other
|
lineage4.9
|
None
|
SRR1238558
|
Other
|
lineage4.9
|
None
|
SRR1184294
|
Other
|
lineage4.9
|
None
|
ERR4813861
|
Other
|
lineage4.3.3
|
None
|
SRR5341396
|
Other
|
lineage3;lineage4.9
|
None
|
SRR1183106
|
RR-TB
|
lineage2.2.1.1
|
None
|
ERR323054
|
MDR-TB
|
La3;M.canetti;lineage3.1
|
None
|
SRR7131023
|
Other
|
lineage4.1.2.1
|
None
|
ERR4024991
|
Other
|
lineage4.8;lineage4.9
|
None
|
ERR3797070
|
Other
|
lineage4.9
|
None
|
ERR9786642
|
Other
|
lineage4.1.2.1
|
None
|
SRR28351341
|
Other
|
lineage4.1.1.1
|
None
|
SRR6325448
|
HR-TB
|
M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3
|
None
|
SRR3675554
|
HR-TB
|
M.canetti;lineage2.1;lineage4.9;lineage6.3
|
None
|
ERR987722
|
MDR-TB
|
|
None
|
SRR28119805
|
Other
|
lineage4.9
|
None
|
SRR28119752
|
Other
|
lineage4.9
|
None
|
ERR13432057
|
Other
|
lineage4.3.3
|
None
|
ERR4769442
|
Sensitive
|
lineage4.9
|
None
|
SRR29093105
|
Other
|
lineage2.2.2;lineage4
|
None
|
ERR181824
|
HR-TB
|
lineage4.9
|
None
|
ERR502908
|
HR-TB
|
lineage2.2.1
|
None
|
ERR9786601
|
Other
|
lineage4.1.2.1
|
None
|
ERR9786671
|
Other
|
|
None
|
SRR12142341
|
HR-TB
|
lineage2.1
|
None
|
ERR176778
|
HR-TB
|
lineage4.9
|
None
|
ERR9786421
|
Other
|
lineage4.1.2.1
|
None
|
SRR28119827
|
Other
|
La3;lineage4.9
|
None
|
ERR4797474
|
Sensitive
|
lineage4.9
|
None
|
ERR6866022
|
Other
|
lineage4.8;lineage4.9
|
None
|
ERR9786525
|
Other
|
lineage4.1;lineage4.8
|
None
|
SRR7240492
|
HR-TB
|
La1.7.1
|
None
|
SRR7496523
|
Other
|
lineage4.7
|
None
|
SRR12708396
|
MDR-TB
|
lineage4.3.2.1
|
None
|
ERR9786604
|
Other
|
|
None
|
SRR1165667
|
Other
|
lineage4.9;lineage6.3
|
None
|
SRR1640750
|
Other
|
|
None
|
ERR4815752
|
Other
|
lineage4.9
|
None
|
ERR4831545
|
XDR-TB
|
M.canetti;lineage2.2
|
None
|
ERR970445
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR323060
|
HR-TB
|
La3;M.canetti;lineage2.1;lineage4.9
|
None
|
ERR5311098
|
HR-TB
|
M.canetti;lineage2.1;lineage4.9;lineage6.3
|
None
|
ERR6358837
|
HR-TB
|
La3;M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3
|
None
|
SRR3675465
|
Other
|
lineage4.9;lineage6.3
|
None
|
ERR323044
|
HR-TB
|
lineage4.3.4.2.1
|
None
|
SRR7236177
|
Other
|
La1.8.1
|
None
|
ERR3283036
|
Other
|
lineage2.1;lineage4.9
|
None
|
ERR4407463
|
HR-TB
|
|
None
|
ERR9787165
|
Other
|
lineage6.1.3
|
None
|
SRR6045952
|
HR-TB
|
M.canetti;lineage2.1;lineage4.9;lineage6.3
|
None
|
SRR1172951
|
Other
|
lineage4.9
|
None
|
SRR13861510
|
Other
|
lineage4.9
|
None
|
SRR1196768
|
MDR-TB
|
|
None
|
ERR176658
|
HR-TB
|
M.canetti;lineage2.1;lineage4.9
|
None
|
ERR181744
|
HR-TB
|
La3;lineage4.9
|
None
|
ERR6866547
|
Other
|
La1.7;lineage4.9;lineage6
|
None
|
SRR22249687
|
Sensitive
|
lineage4.8
|
None
|
ERR3468607
|
Other
|
lineage4.9
|
None
|
SRR9971114
|
Other
|
lineage2.2.1
|
None
|
SRR1173562
|
Sensitive
|
lineage4.9
|
None
|
SRR12708414
|
HR-TB
|
lineage2.2.1
|
None
|
ERR4810624
|
MDR-TB
|
lineage2.2
|
None
|
SRR13861235
|
HR-TB
|
lineage4.9
|
None
|
SRR28119717
|
Other
|
lineage4.9;lineage6.3
|
None
|
ERR4797285
|
MDR-TB
|
lineage1.2.2.2
|
None
|
ERR736817
|
HR-TB
|
lineage4.3.4
|
None
|
ERR323058
|
HR-TB
|
La3;M.canetti;lineage2.1;lineage4.9
|
None
|
SRR3742657
|
Pre-XDR-TB
|
La3;M.canetti;lineage2.2.1
|
None
|
SRR12708399
|
MDR-TB
|
lineage4.3.4.2.1
|
None
|
SRR6458421
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR485006
|
HR-TB
|
lineage4.9
|
None
|
ERR176793
|
Other
|
lineage4.1.1.1
|
None
|
ERR751326
|
Other
|
lineage4.9
|
None
|
ERR1023295
|
MDR-TB
|
M.canetti;lineage2.1;lineage4.1.2.1
|
None
|
SRR6785268
|
Sensitive
|
lineage4.2.1
|
None
|
ERR3283021
|
HR-TB
|
lineage4.9
|
None
|
ERR9786443
|
Sensitive
|
lineage4.8
|
None
|
ERR323053
|
MDR-TB
|
La2;lineage4.9;lineage9
|
None
|
ERR2517489
|
Sensitive
|
lineage4.1.2.1
|
nl
|
ERR4799171
|
Pre-XDR-TB
|
lineage4.8
|
None
|
ERR9786619
|
Sensitive
|
lineage4.8
|
None
|
SRR1165699
|
Other
|
lineage4.9
|
None
|
ERR3804169
|
HR-TB
|
lineage4.1.3
|
None
|
ERR11049020
|
Other
|
lineage4.8
|
None
|
ERR4872094
|
MDR-TB
|
lineage5.2
|
None
|
ERR4596910
|
Sensitive
|
lineage4.9
|
None
|
SRR13423544
|
Other
|
lineage4.5
|
None
|
SRR6325444
|
MDR-TB
|
M.canetti;lineage2.1;lineage6.3
|
None
|
ERR760733
|
MDR-TB
|
lineage4.1.2.1.1
|
None
|
ERR926154
|
Sensitive
|
lineage4.9
|
None
|
SRR1173767
|
MDR-TB
|
lineage4.4.1.1
|
None
|
ERR736859
|
HR-TB
|
M.canetti;lineage2.1;lineage4.9
|
None
|
ERR3283010
|
Sensitive
|
La1.8.1
|
None
|
ERR702406
|
Other
|
lineage2.1
|
None
|
SRR1175049
|
Other
|
lineage4.8;lineage4.9
|
None
|
ERR176766
|
HR-TB
|
lineage2.1;lineage4.9
|
None
|
SRR6785527
|
Sensitive
|
lineage2.2.1
|
None
|
ERR3445501
|
HR-TB
|
La1.7.1;La1.7.X-unk4;lineage7
|
None
|
SRR3675581
|
Other
|
lineage2.1;lineage4.9
|
None
|
ERR473332
|
Other
|
lineage4.9
|
None
|
SRR5341308
|
Sensitive
|
lineage4.9
|
None
|
SRR9970978
|
Sensitive
|
La1;lineage4.1.2
|
None
|
ERR323055
|
MDR-TB
|
La3;M.canetti;lineage2.1;lineage4.9
|
None
|
SRR12416840
|
MDR-TB
|
lineage4.9
|
None
|
ERR13265748
|
Other
|
lineage4.9;lineage6.3
|
None
|
ERR12015083
|
Other
|
La3;lineage4.8
|
None
|
ERR3797086
|
Sensitive
|
lineage4.9
|
None
|
SRR12708389
|
MDR-TB
|
lineage4.8.1
|
None
|
ERR4797054
|
Pre-XDR-TB
|
lineage2.1
|
None
|
ERR1334034
|
Other
|
lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3
|
None
|
ERR2229542
|
Other
|
lineage4.8
|
None
|
SRR1165423
|
RR-TB
|
lineage4.1.2.1
|
None
|
ERR4407452
|
Other
|
lineage3
|
None
|
SRR1173777
|
Sensitive
|
lineage4.9
|
None
|
SRR1183111
|
HR-TB
|
lineage4.9
|
None
|
SRR3675517
|
Other
|
La3;lineage2.1;lineage4.9;lineage6.3
|
None
|
SRR1510066
|
RR-TB
|
lineage1.2.1.2.1
|
None
|
ERR9786645
|
Other
|
lineage4.6.2.2
|
None
|
ERR5908228
|
RR-TB
|
lineage4.3.3
|
None
|
SRR6046225
|
Other
|
lineage4.9;lineage6.3
|
None
|
SRR1183144
|
Other
|
lineage2.2.1
|
None
|
SRR3675320
|
MDR-TB
|
M.canetti;lineage2.1;lineage4.3.1;lineage4.9
|
None
|
ERR323033
|
MDR-TB
|
La3;M.canetti;lineage2.1;lineage4.9
|
None
|
ERR3077978
|
RR-TB
|
lineage1.1
|
None
|
SRR5341299
|
HR-TB
|
lineage4.9
|
None
|
ERR502912
|
Other
|
lineage2.2.1
|
None
|
ERR2851356
|
Sensitive
|
lineage4.9
|
None
|
ERR323041
|
HR-TB
|
M.canetti;lineage2.1
|
None
|
ERR386953
|
HR-TB
|
M.canetti;lineage2.1;lineage4.9
|
None
|
ERR11465579
|
Sensitive
|
lineage4.3.4.1
|
None
|
SRR5341469
|
HR-TB
|
lineage4.9
|
None
|
SRR1165584
|
Other
|
lineage4.1.2.1
|
None
|
ERR4797264
|
Sensitive
|
lineage4.9
|
None
|
SRR1180996
|
Sensitive
|
lineage4.9
|
None
|
SRR1183965
|
Sensitive
|
lineage4.9
|
None
|
ERR11252558
|
Other
|
lineage4.6.3;lineage4.9
|
None
|
SRR12708419
|
Other
|
lineage4.3.3
|
None
|
SRR12416824
|
HR-TB
|
lineage2.1;lineage2.2.1;lineage4.9;lineage6.3
|
None
|
ERR6359070
|
Sensitive
|
lineage4.9
|
None
|
ERR3283025
|
MDR-TB
|
La1.7;lineage4.9
|
None
|
ERR9119500
|
MDR-TB
|
lineage5.2
|
None
|
SRR3675221
|
Other
|
lineage4.9
|
None
|
SRR26159047
|
Other
|
lineage4.6.3;lineage4.9
|
None
|
SRR1173118
|
Other
|
lineage2.2.1
|
None
|
ERR11252612
|
Other
|
La3;lineage4.9
|
None
|
SRR28044634
|
Other
|
lineage3
|
None
|
SRR5341387
|
Other
|
lineage4.9
|
None
|
SRR25827682
|
Other
|
|
None
|
SRR1172857
|
Other
|
|
None
|
ERR9787197
|
Other
|
|
None
|
SRR6325442
|
HR-TB
|
lineage2.1;lineage4.1.1.1;lineage6.3
|
None
|
SRR6789621
|
Other
|
lineage4.9
|
None
|
SRR8552928
|
HR-TB
|
lineage2.1;lineage4.9;lineage6.3
|
None
|
SRR1173153
|
Other
|
lineage4.9
|
None
|
ERR473314
|
HR-TB
|
M.canetti;lineage2.1;lineage4.9
|
None
|
ERR4814352
|
Other
|
lineage2.2.1
|
None
|
ERR4818536
|
Other
|
lineage4.9
|
None
|
ERR11465024
|
Other
|
lineage4.1.1.3
|
None
|
ERR2509673
|
Other
|
lineage2.2.1
|
None
|
SRR1162864
|
Other
|
lineage4.1.2.1
|
None
|
SRR28119756
|
Other
|
lineage4.9;lineage6.3
|
None
|
ERR7911670
|
XDR-TB
|
M.canetti;lineage2.2
|
None
|
SRR5431730
|
Other
|
La1.8.1
|
None
|
ERR323047
|
HR-TB
|
La3;M.canetti;lineage2.1;lineage4.9
|
None
|
ERR3445502
|
Sensitive
|
lineage4.9;lineage7
|
None
|
ERR736875
|
HR-TB
|
lineage4.9
|
None
|
ERR736865
|
HR-TB
|
lineage4.3.2;lineage4.9
|
None
|
SRR6046397
|
Other
|
M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3
|
None
|
SRR15600376
|
HR-TB
|
lineage2.2.1.1
|
None
|
SRR11349145
|
Pre-XDR-TB
|
lineage4.4.1.1.1
|
None
|
SRR1167384
|
Other
|
La3;lineage4.9
|
None
|
SRR1173363
|
Other
|
|
None
|
SRR3675572
|
Other
|
|
None
|
SRR3675444
|
HR-TB
|
M.canetti;lineage2.1;lineage4.9
|
None
|
SRR6046141
|
Other
|
lineage4.9
|
None
|
ERR13265528
|
Other
|
lineage4.9;lineage6.3
|
None
|
SRR1196566
|
Other
|
lineage4.9
|
None
|
SRR3675232
|
Other
|
lineage4.1.2.1
|
None
|
ERR1063858
|
HR-TB
|
lineage4.9
|
None
|
SRR7535082
|
Sensitive
|
lineage4.9
|
None
|
SRR18289200
|
Other
|
lineage4.9
|
None
|
SRR29096541
|
Other
|
lineage4.9
|
None
|
SRR6045832
|
Other
|
lineage4.9
|
None
|
ERR323062
|
Sensitive
|
lineage4.9
|
None
|
ERR3797023
|
HR-TB
|
La1.8.1
|
None
|
ERR926157
|
Sensitive
|
lineage4.9
|
None
|
SRR1180137
|
Other
|
lineage2.2.1
|
None
|
ERR3283027
|
Other
|
lineage2.1;lineage4.9;lineage6.3
|
None
|
SRR19304036
|
Other
|
La3;lineage2.1;lineage4.9;lineage6.3
|
None
|
ERR13285304
|
Other
|
lineage4.9
|
None
|
ERR9786569
|
Other
|
lineage4.8
|
None
|
ERR9787061
|
Sensitive
|
lineage6.2.3
|
None
|
ERR323066
|
Sensitive
|
lineage4.9
|
None
|
ERR4769444
|
HR-TB
|
lineage4.9
|
None
|
SRR3675508
|
Other
|
lineage2.1;lineage4.9;lineage6.3
|
None
|
SRR10808668
|
Sensitive
|
lineage2.2.1
|
None
|
SRR1196583
|
Other
|
lineage4.9
|
None
|
ERR2693229
|
RR-TB
|
La3;M.canetti;lineage4.9
|
None
|
SRR6046540
|
Other
|
lineage2.1;lineage4.9
|
None
|
ERR4810741
|
HR-TB
|
La3;lineage2.1;lineage6.3
|
None
|
SRR1165506
|
Other
|
lineage4.1.2.1
|
None
|
ERR1035239
|
MDR-TB
|
M.canetti;lineage2.1;lineage4.9
|
None
|
SRR5341373
|
Other
|
lineage4.9
|
None
|
SRR11444077
|
Sensitive
|
lineage4.6.2.2
|
None
|
ERR736872
|
HR-TB
|
lineage4.9
|
None
|
ERR4769439
|
HR-TB
|
lineage4.9
|
None
|
ERR323063
|
HR-TB
|
La3;M.canetti;lineage2.1;lineage4.9
|
None
|
ERR11252736
|
Other
|
lineage4.9
|
None
|
ERR6358755
|
Other
|
lineage4.6.1.1
|
None
|
SRR3742665
|
HR-TB
|
M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3
|
None
|
SRR12708409
|
HR-TB
|
lineage4.3.3
|
None
|
ERR3283019
|
Other
|
lineage2.1;lineage4.9
|
None
|
ERR161034
|
HR-TB
|
lineage4.3.4.2.1
|
None
|
ERR2693239
|
RR-TB
|
M.canetti;lineage2.1;lineage4
|
None
|
ERR1063896
|
Sensitive
|
|
None
|
SRR20969677
|
HR-TB
|
La3;lineage2
|
None
|
ERR294248
|
MDR-TB
|
lineage2.1;lineage4.9
|
None
|
ERR4831546
|
HR-TB
|
M.canetti;lineage2.2.2;lineage6.2
|
None
|
ERR736874
|
Other
|
La3;lineage2.1;lineage4.9
|
None
|
SRR1173629
|
Other
|
lineage2.1;lineage4.9
|
None
|
SRR5341313
|
Sensitive
|
La1.7;lineage4.9;lineage7
|
None
|
SRR1183049
|
RR-TB
|
lineage2.2
|
None
|
SRR1159378
|
Other
|
lineage4.9
|
None
|
SRR1173587
|
Pre-XDR-TB
|
lineage4.1.1.3
|
None
|
ERR3797069
|
Other
|
lineage4.9
|
None
|
SRR3675482
|
Other
|
lineage4.9
|
None
|
ERR9119508
|
MDR-TB
|
lineage4.6.4
|
None
|
SRR26399973
|
Other
|
La3;lineage4.9
|
None
|
ERR9119669
|
HR-TB
|
lineage4.9
|
None
|
ERR9786682
|
Other
|
lineage4.1.2.1
|
None
|
SRR1173355
|
Other
|
lineage4.9
|
None
|
ERR9786627
|
Other
|
lineage4.1.2.1
|
None
|
ERR124651
|
MDR-TB
|
La3;M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3
|
None
|
SRR5153091
|
HR-TB
|
lineage4.3.3
|
None
|
ERR4188247
|
HR-TB
|
lineage4.9
|
None
|
SRR5341400
|
Sensitive
|
lineage4.9
|
None
|
ERR12015086
|
RR-TB
|
lineage4.8
|
None
|
SRR7496517
|
Other
|
|
None
|
ERR323039
|
HR-TB
|
La2;lineage4.9
|
None
|
SRR1196677
|
Other
|
lineage2.2
|
None
|
ERR11466072
|
Sensitive
|
lineage4.3.4.2.1
|
None
|
SRR5341310
|
Other
|
lineage1.1.2
|
None
|
ERR6866410
|
Sensitive
|
lineage4.9
|
None
|
SRR1166821
|
Other
|
lineage4.1.2.1
|
None
|
SRR1173218
|
Other
|
lineage4.3.3
|
None
|
SRR6325445
|
HR-TB
|
M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3
|
None
|
SRR1181020
|
Other
|
lineage2.2.1
|
None
|
ERR176741
|
Other
|
lineage4.9
|
None
|
ERR736848
|
Other
|
lineage4.9
|
None
|
SRR12708371
|
HR-TB
|
lineage4.1.1.3
|
None
|
SRR12708418
|
HR-TB
|
lineage2.2.1
|
None
|
SRR5341300
|
HR-TB
|
lineage4.9
|
None
|
ERR323115
|
Sensitive
|
lineage4.9
|
None
|
ERR11138607
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4811105
|
HR-TB
|
La3;lineage2.1;lineage4.9;lineage6.3
|
None
|
SRR15368973
|
Other
|
lineage4.9
|
None
|
SRR1791696
|
Other
|
La1.8.1
|
None
|
ERR1063862
|
HR-TB
|
lineage4.9
|
None
|
SRR6785263
|
Sensitive
|
lineage2.2.1
|
None
|
ERR11466174
|
Other
|
lineage4.8
|
None
|
ERR3273109
|
HR-TB
|
lineage4
|
None
|
ERR926163
|
Other
|
lineage4.9
|
None
|
SRR3675515
|
HR-TB
|
M.canetti;lineage2.1;lineage4.9
|
None
|
ERR3283044
|
Other
|
lineage4
|
None
|
ERR3283032
|
Other
|
lineage4.9
|
None
|
ERR1063859
|
HR-TB
|
La1.7.1;lineage4.9
|
None
|
ERR926159
|
Sensitive
|
lineage4.9
|
None
|
SRR3675464
|
HR-TB
|
lineage2.1;lineage4.9;lineage6.3;lineage8
|
None
|
ERR323037
|
Other
|
lineage4.9
|
None
|
ERR126618
|
MDR-TB
|
La3;M.canetti;lineage2.1;lineage4.9;lineage6.3
|
None
|
ERR245794
|
HR-TB
|
lineage4.3.4.2.1
|
None
|
SRR28119777
|
Other
|
lineage4.9
|
None
|
ERR1035122
|
Sensitive
|
lineage4.9
|
None
|
SRR1181091
|
Other
|
lineage2.2.1.1
|
None
|
ERR176643
|
Other
|
La3;lineage4.9
|
None
|
ERR133825
|
HR-TB
|
La1;lineage4.9
|
None
|
ERR8479578
|
Sensitive
|
lineage1.1.3.1
|
None
|
ERR3275215
|
RR-TB
|
lineage4.1.2.1
|
nl
|
SRR069989
|
HR-TB
|
lineage2.2.2
|
None
|
SRR3675549
|
Other
|
lineage4.9
|
None
|
ERR3797047
|
MDR-TB
|
lineage4.9
|
None
|
SRR21677886
|
Sensitive
|
lineage4.9
|
None
|
ERR4797193
|
HR-TB
|
lineage1.1.2
|
None
|
SRR1172234
|
Other
|
lineage4.9
|
None
|
SRR7496509
|
Other
|
|
None
|
ERR736867
|
Other
|
lineage2.1;lineage4.9
|
None
|
ERR176751
|
Other
|
lineage4.9
|
None
|
SRR26937071
|
MDR-TB
|
La3;lineage2.2.1
|
None
|
SRR26937107
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR323043
|
Other
|
lineage2.1;lineage4.9
|
None
|
ERR5311096
|
HR-TB
|
M.canetti;lineage2.1;lineage4.9;lineage6.3
|
None
|
ERR13285305
|
Other
|
lineage4.9
|
None
|
ERR3799304
|
Other
|
lineage6.1.1
|
None
|
ERR5311102
|
MDR-TB
|
M.canetti;lineage2.1;lineage4.9
|
None
|
ERR4816559
|
MDR-TB
|
lineage4.4.1.1
|
None
|
SRR11972367
|
Sensitive
|
lineage2.2.1
|
None
|
ERR779852
|
Sensitive
|
lineage4.9
|
None
|
ERR212125
|
HR-TB
|
lineage4.9
|
None
|
SRR5341315
|
Other
|
La1.7;lineage3;lineage4.9;lineage7
|
None
|
ERR9786656
|
Sensitive
|
lineage4.1.2.1
|
None
|
SRR5341298
|
Sensitive
|
lineage4.9
|
None
|
ERR9787030
|
RR-TB
|
lineage6.1.2
|
None
|
SRR1180147
|
Other
|
lineage2.2.1.1
|
None
|
ERR1873393
|
HR-TB
|
M.canetti;lineage2.1;lineage4.9
|
None
|
ERR4796929
|
Sensitive
|
lineage4.9
|
None
|
SRR1915487
|
Other
|
La1.2.BCG
|
None
|
ERR323038
|
HR-TB
|
La3;M.canetti;lineage2.1;lineage4.9
|
None
|
ERR3804155
|
Other
|
lineage4.1.2.1
|
None
|
ERR473334
|
HR-TB
|
lineage4.9
|
None
|
ERR736831
|
Other
|
lineage4.9
|
None
|
ERR9119096
|
RR-TB
|
lineage4.3.3
|
None
|
ERR4831621
|
MDR-TB
|
lineage2.2.1.1
|
None
|
SRR13861400
|
Other
|
lineage4.9
|
None
|
ERR9786843
|
Other
|
|
None
|
SRR1184381
|
MDR-TB
|
|
None
|
SRR5341412
|
Pre-XDR-TB
|
lineage3
|
None
|
ERR11252664
|
Other
|
lineage2.2.1
|
None
|
ERR212001
|
HR-TB
|
|
None
|
ERR212033
|
Other
|
lineage4.9
|
None
|
ERR234659
|
Other
|
|
None
|
SRR10808730
|
Other
|
lineage4.9
|
None
|
ERR124652
|
HR-TB
|
La3;M.canetti;lineage2.1;lineage4.9
|
None
|
ERR126600
|
HR-TB
|
La3;M.canetti;lineage2.1;lineage4.9;lineage6.3
|
None
|
ERR9119483
|
Pre-XDR-TB
|
lineage5.2
|
None
|
ERR11465906
|
Sensitive
|
lineage4.4.1.1
|
None
|
ERR176549
|
Other
|
lineage4.3.4.2.1
|
None
|
ERR4819462
|
Sensitive
|
lineage4.9
|
None
|
ERR926156
|
Sensitive
|
lineage4.9
|
None
|
SRR1180226
|
HR-TB
|
lineage4.9
|
None
|
SRR19295647
|
Sensitive
|
lineage4.9
|
None
|
SRR1181289
|
Other
|
lineage2.2.1
|
None
|
SRR1184372
|
MDR-TB
|
|
None
|
SRR6785227
|
Other
|
lineage2.2.1
|
None
|
SRR1173633
|
Other
|
lineage4.9
|
None
|
SRR1173453
|
Other
|
lineage4.4.1.1
|
None
|
ERR926165
|
Sensitive
|
lineage4.9
|
None
|
ERR9786440
|
Other
|
lineage4.1
|
None
|
ERR2446118
|
Other
|
lineage4.1.2.1
|
nl
|
SRR3675243
|
Other
|
lineage4.9
|
None
|
SRR5341333
|
Other
|
lineage2.1;lineage4.9
|
None
|
SRR21690362
|
Other
|
lineage1.1.1
|
None
|
ERR867544
|
Other
|
lineage4.9
|
None
|
ERR2693252
|
Sensitive
|
lineage4.9
|
None
|
ERR3275196
|
Other
|
lineage2.2.1
|
nl
|
ERR502524
|
HR-TB
|
lineage4.9;lineage6.3
|
None
|
ERR6866807
|
Other
|
lineage4.9
|
None
|
ERR3797016
|
HR-TB
|
M.canetti;lineage2.1;lineage4.9
|
None
|
SRR21732980
|
Other
|
lineage4.3.3
|
None
|
SRR25827507
|
MDR-TB
|
lineage4.1.1.1
|
None
|
SRR29051093
|
Other
|
lineage4.9
|
None
|
ERR038268
|
HR-TB
|
La3;M.canetti;lineage4.8;lineage4.9
|
None
|
ERR926155
|
Sensitive
|
lineage4.9
|
None
|
ERR9786694
|
Other
|
lineage4.1.2.1
|
None
|
ERR4796577
|
HR-TB
|
|
None
|
ERR4816322
|
Other
|
lineage4.9
|
None
|
ERR4828872
|
Sensitive
|
lineage4.2;lineage4.9
|
None
|
SRR1158918
|
Sensitive
|
lineage4.9
|
None
|
SRR13861288
|
Other
|
lineage4.9
|
None
|
SRR1173778
|
Other
|
lineage4.9
|
None
|
ERR176651
|
Other
|
lineage4.9
|
None
|
ERR12015084
|
Other
|
lineage4.8
|
None
|
SRR18549032
|
HR-TB
|
lineage2.2.1.2;lineage7
|
None
|
ERR137286
|
Other
|
lineage4.9
|
None
|
ERR4188342
|
MDR-TB
|
M.canetti;lineage2.1;lineage4.9
|
None
|
ERR3797029
|
Other
|
lineage4.9
|
None
|
SRR1173568
|
Sensitive
|
lineage4.9
|
None
|
SRR29016780
|
Other
|
lineage4.9
|
None
|
SRR1175052
|
HR-TB
|
lineage4.9
|
None
|
SRR1172310
|
HR-TB
|
lineage4.9
|
None
|
ERR9787014
|
Other
|
lineage6.1.1
|
None
|
SRR3675507
|
Other
|
lineage4.9
|
None
|
ERR4769417
|
Pre-XDR-TB
|
lineage4.9
|
None
|
ERR987729
|
HR-TB
|
lineage3.1.2.1;lineage3.1.2.2
|
None
|
SRR9971041
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR3275220
|
Other
|
lineage3
|
nl
|
ERR176568
|
HR-TB
|
La3;lineage2.1;lineage4.9
|
None
|
SRR1173788
|
Sensitive
|
lineage4.9
|
None
|
ERR9787139
|
Other
|
lineage6.3.1
|
None
|
SRR29055629
|
MDR-TB
|
La3;lineage2.2.1
|
None
|
ERR4811075
|
Other
|
lineage2.1;lineage4.9;lineage6.3
|
None
|
ERR473323
|
HR-TB
|
lineage4.9
|
None
|
SRR1184388
|
Other
|
lineage2.1;lineage4.9
|
None
|
ERR550636
|
MDR-TB
|
lineage4.1.1.3
|
None
|
ERR4817896
|
HR-TB
|
lineage2.2.1
|
None
|
SRR25827687
|
MDR-TB
|
lineage1.1.2
|
None
|
ERR5311081
|
MDR-TB
|
M.canetti;lineage2.1;lineage4.9
|
None
|
ERR323034
|
MDR-TB
|
La3;M.canetti;lineage2.1;lineage3.1
|
None
|
SRR1184298
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR11972306
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR550637
|
MDR-TB
|
lineage4.1.1.3
|
None
|
SRR1169194
|
Other
|
lineage4.9
|
None
|
SRR5341432
|
Sensitive
|
La1.7;lineage4.9;lineage7
|
None
|
SRR9613550
|
HR-TB
|
lineage4.1.2.1
|
None
|
ERR702405
|
Sensitive
|
lineage4.9
|
None
|
SRR1163221
|
MDR-TB
|
lineage4.1.2.1
|
None
|
ERR2693228
|
RR-TB
|
lineage4.9
|
None
|
ERR13292526
|
Other
|
lineage4.9
|
None
|
ERR736837
|
Pre-XDR-TB
|
lineage4.9
|
None
|
ERR126608
|
HR-TB
|
La3;M.canetti;lineage2.1;lineage4.9
|
None
|
SRR1167055
|
Other
|
lineage4.1.2.1
|
None
|
SRR12708415
|
HR-TB
|
lineage2.2.1
|
None
|
ERR13245558
|
MDR-TB
|
La3;lineage2.2.2
|
None
|
SRR12708407
|
HR-TB
|
lineage4.3.2.1
|
None
|
ERR323045
|
HR-TB
|
lineage1;lineage4.9
|
None
|
ERR736856
|
Sensitive
|
lineage4.9
|
None
|
ERR1035157
|
Other
|
lineage4.9
|
None
|
ERR502510
|
Sensitive
|
lineage4.9
|
None
|
ERR9786526
|
Other
|
lineage4.1;lineage4.8
|
None
|
ERR1063855
|
Other
|
lineage4.9
|
None
|
ERR1063883
|
HR-TB
|
lineage4.9
|
None
|
SRR6045347
|
Other
|
lineage4.9
|
None
|
ERR3468544
|
Other
|
lineage2.1;lineage4.9
|
None
|
SRR28119811
|
Other
|
lineage2.2.1;lineage6.3
|
None
|
ERR4821655
|
HR-TB
|
lineage4.9
|
None
|
SRR14801749
|
HR-TB
|
lineage4.9
|
None
|
ERR323064
|
MDR-TB
|
La3;M.canetti;lineage2.1;lineage4.9
|
None
|
ERR4799478
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR9119525
|
MDR-TB
|
lineage4.6.2.2
|
None
|
ERR4816852
|
Other
|
lineage4.9
|
None
|
ERR9786617
|
Other
|
lineage4.1.1.1
|
None
|
SAMEA2533358
|
MDR-TB
|
lineage4.1.1.3
|
None
|
ERR124636
|
Sensitive
|
lineage4.9
|
None
|
ERR182014
|
Sensitive
|
lineage4.1.2
|
mw
|
ERR6359069
|
Sensitive
|
lineage4.9
|
None
|
ERR4872119
|
MDR-TB
|
lineage4.6.2.2
|
None
|
SRR3675248
|
Other
|
lineage4.9
|
None
|
SRR10808399
|
Sensitive
|
lineage4.9
|
None
|
ERR926161
|
Sensitive
|
lineage4.9
|
None
|
ERR553132
|
MDR-TB
|
lineage4.1.2.1
|
None
|
ERR970441
|
RR-TB
|
lineage2.2.1.1
|
None
|
SRR25827497
|
XDR-TB
|
lineage2.2.1;lineage3
|
None
|
SRR18910194
|
HR-TB
|
lineage2.2.2
|
None
|
ERR2027263
|
Other
|
lineage4
|
None
|
SRR1169306
|
Other
|
La3;lineage4.9
|
None
|
SRR1173706
|
Other
|
lineage4.9
|
None
|
SRR29016901
|
Other
|
La3;lineage4.9
|
None
|
SRR23961540
|
Other
|
La1.7.1
|
None
|
ERR5311078
|
MDR-TB
|
M.canetti;lineage2.1;lineage4.9;lineage6.3
|
None
|
ERR161033
|
MDR-TB
|
M.canetti;lineage2.1;lineage4.9
|
None
|
ERR926158
|
Sensitive
|
lineage4.9
|
None
|
ERR4797184
|
Sensitive
|
lineage4.9
|
None
|
ERR161039
|
HR-TB
|
La3;lineage4.3.4
|
None
|
ERR3445503
|
Other
|
La1.7.1;La1.7.X-unk4
|
None
|
ERR067699
|
Sensitive
|
La1;lineage2;lineage4.9
|
None
|
ERR5917710
|
Other
|
lineage4.1.2.1
|
None
|
SRR5341470
|
MDR-TB
|
lineage4.9;lineage9
|
None
|
SRR12708370
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR1873492
|
HR-TB
|
M.canetti;lineage2.2.2;lineage6.2
|
None
|
ERR1063846
|
HR-TB
|
lineage4.9
|
None
|
SRR9970981
|
RR-TB
|
lineage4.3.2.1
|
None
|
ERR6359074
|
HR-TB
|
lineage4.9
|
None
|
SRR6325447
|
MDR-TB
|
lineage2.1;lineage4.1.1.1;lineage6.3
|
None
|
ERR867540
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR6789624
|
HR-TB
|
lineage4.1.1.3
|
None
|
ERR2199988
|
MDR-TB
|
lineage4.1.1.3
|
None
|
ERR736871
|
HR-TB
|
lineage2.1;lineage4.9;lineage6.3
|
None
|
SRR1175074
|
Other
|
|
None
|
ERR4872102
|
MDR-TB
|
lineage4.6.4
|
None
|
ERR1063839
|
MDR-TB
|
La2;lineage2.2
|
None
|
ERR4872077
|
Pre-XDR-TB
|
lineage5.2
|
None
|
ERR4811022
|
HR-TB
|
M.canetti;lineage2.1;lineage4.9
|
None
|
ERR772255
|
MDR-TB
|
lineage2.1;lineage4.3.2
|
None
|
ERR8665994
|
Other
|
lineage4.9
|
None
|
SRR1172844
|
Sensitive
|
lineage4.9
|
None
|
SRR19303884
|
Other
|
lineage2.1;lineage6.3
|
None
|
SRR28119741
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR12708413
|
HR-TB
|
lineage4.1.1.3
|
None
|
ERR3797083
|
RR-TB
|
lineage4.9
|
None
|
SRR9970980
|
HR-TB
|
lineage4.1.2
|
None
|
SRR5341455
|
Sensitive
|
lineage4.9
|
None
|
ERR4811142
|
RR-TB
|
La3;lineage2.1;lineage4.9;lineage6.3
|
None
|
ERR473277
|
HR-TB
|
La3;M.canetti;lineage4.9
|
None
|
SRR1791747
|
Other
|
La1.8.1
|
None
|
ERR5311101
|
MDR-TB
|
M.canetti;lineage2.1;lineage4.9
|
None
|
ERR6358979
|
Other
|
lineage4.9
|
None
|
ERR323036
|
HR-TB
|
La3;M.canetti;lineage2.1;lineage4.9
|
None
|
ERR124642
|
MDR-TB
|
M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3
|
None
|
ERR9896144
|
Other
|
lineage3
|
None
|
SRR5341332
|
Pre-XDR-TB
|
lineage3
|
None
|
SRR23961529
|
Other
|
lineage4.9
|
None
|
SRR5341341
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1162740
|
Other
|
lineage4.1.2.1
|
None
|
ERR926162
|
Sensitive
|
lineage4.9
|
None
|
ERR736863
|
HR-TB
|
La3;M.canetti;lineage2.1;lineage4.9;lineage6.3
|
None
|
SRR1165628
|
Other
|
La3;lineage4.9
|
None
|
ERR11466242
|
Sensitive
|
lineage4.1.1.3
|
None
|
SRR1173484
|
Sensitive
|
lineage4.9
|
None
|
ERR323107
|
Sensitive
|
lineage4.9
|
None
|
ERR323040
|
HR-TB
|
La3;M.canetti;lineage2.1;lineage4.9;lineage6.3
|
None
|
SRR14801759
|
HR-TB
|
La1.7;lineage4.9
|
None
|
ERR11466146
|
Other
|
lineage4.3.4.2.1
|
None
|
SRR3675448
|
Other
|
lineage4.9
|
None
|
SRR5341293
|
Sensitive
|
lineage4.9
|
None
|
SRR5341425
|
Other
|
lineage4.9
|
None
|
ERR216965
|
Sensitive
|
lineage4.9
|
None
|
ERR4798099
|
Other
|
lineage4.9
|
None
|
ERR1063857
|
MDR-TB
|
La2;lineage4.9
|
None
|
ERR4831616
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR1184312
|
Other
|
lineage2.2.1
|
None
|
ERR6359066
|
HR-TB
|
lineage4.9
|
None
|
ERR1873396
|
Pre-XDR-TB
|
M.canetti;lineage2.2
|
None
|
ERR926160
|
Sensitive
|
lineage4.9
|
None
|
SRR3675486
|
HR-TB
|
M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3
|
None
|
ERR736839
|
HR-TB
|
M.canetti;lineage4.9
|
None
|
ERR181887
|
Other
|
lineage4.9
|
None
|
SRR10809074
|
Sensitive
|
lineage4.9
|
None
|
SRR5341384
|
HR-TB
|
lineage4.9
|
None
|
SRR1174897
|
MDR-TB
|
lineage4.9;lineage9
|
None
|
SRR1173384
|
Other
|
lineage4.9
|
None
|
ERR4769521
|
RR-TB
|
lineage4.9
|
None
|
SRR16156817
|
Other
|
lineage4.9
|
None
|
SRR26159043
|
Other
|
lineage4.9
|
None
|
SRR6789626
|
Other
|
|
None
|
ERR4798504
|
RR-TB
|
lineage3
|
None
|
ERR161037
|
Other
|
lineage4.9
|
None
|
SRR10315567
|
HR-TB
|
lineage2.2.1
|
None
|
SRR5341461
|
HR-TB
|
lineage4.9
|
None
|
SRR1196474
|
Other
|
lineage3.1.1
|
None
|
SRR1196546
|
Other
|
lineage4.9
|
None
|
SRR12708411
|
HR-TB
|
lineage1.2.2.2
|
None
|
SRR1184380
|
Other
|
lineage2.1;lineage4.9
|
None
|
SRR12708392
|
Other
|
lineage2.2.1
|
None
|