TB-Profiler result

Run: SRR1172844
Summary

Run ID: SRR1172844

Sample name:

Date: 03-04-2023 03:11:31

Number of reads: 166105

Percentage reads mapped: 50.66

Strain: lineage4.4.1.1

Drug-resistance: MDR-TB

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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
lineage4 Euro-American LAM;T;S;X;H None 0.99
lineage4.4.1 Euro-American (S-type) S;T None 0.2
lineage4.4.1.1 Euro-American S;Orphans None 0.1
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
rpoB 761155 p.Ser450Leu missense_variant 0.5 rifampicin
rpsL 781822 p.Lys88Arg missense_variant 0.38 streptomycin
fabG1 1673425 c.-15C>T upstream_gene_variant 1.0 isoniazid, ethionamide
embB 4247448 p.His312Arg missense_variant 0.6 ethambutol
embB 4247588 p.Leu359Ile missense_variant 0.5 ethambutol
embB 4248003 p.Gln497Arg missense_variant 0.5 ethambutol
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
gyrB 6144 p.His302Arg missense_variant 0.6
gyrB 6196 c.957C>T synonymous_variant 0.5
gyrB 6238 c.999G>A synonymous_variant 0.5
gyrB 6242 p.Arg335Lys missense_variant 0.4
gyrB 6250 c.1011A>G synonymous_variant 0.4
gyrB 6256 c.1017G>A synonymous_variant 0.4
gyrB 6268 c.1029C>G synonymous_variant 0.5
gyrA 6307 c.-995T>G upstream_gene_variant 0.4
gyrA 6751 c.-551G>C upstream_gene_variant 0.67
gyrA 6760 c.-542G>C upstream_gene_variant 0.5
gyrA 6763 c.-539G>C upstream_gene_variant 0.5
gyrA 6775 c.-527G>C upstream_gene_variant 0.4
gyrA 6967 c.-335T>C upstream_gene_variant 0.67
gyrA 6973 c.-329G>C upstream_gene_variant 0.5
gyrA 6982 c.-320A>C upstream_gene_variant 0.5
gyrA 7006 c.-296T>C upstream_gene_variant 0.67
gyrA 7007 c.-295C>T upstream_gene_variant 0.67
gyrA 7010 c.-292C>T upstream_gene_variant 0.67
gyrA 7015 c.-287G>A upstream_gene_variant 0.67
gyrB 7023 p.Leu595Gln missense_variant 0.67
gyrA 7033 c.-269G>C upstream_gene_variant 0.67
gyrA 7141 c.-161T>C upstream_gene_variant 0.33
gyrA 7147 c.-155G>C upstream_gene_variant 0.33
gyrA 7165 c.-137C>G upstream_gene_variant 0.29
gyrA 7178 c.-124T>C upstream_gene_variant 0.38
gyrA 7186 c.-116C>G upstream_gene_variant 0.38
gyrA 7216 c.-86G>C upstream_gene_variant 0.29
gyrA 7347 p.Glu16Gln missense_variant 0.22
gyrA 7355 c.54T>C synonymous_variant 0.22
gyrA 7361 c.60C>T synonymous_variant 0.22
gyrA 7362 p.Glu21Gln missense_variant 1.0
gyrA 7391 c.90C>T synonymous_variant 0.3
gyrA 7394 c.93T>C synonymous_variant 0.3
gyrA 7406 c.105G>C synonymous_variant 0.27
gyrA 7412 c.111C>G synonymous_variant 0.3
gyrA 7427 c.126G>C synonymous_variant 0.3
gyrA 7436 c.135C>T synonymous_variant 0.33
gyrA 7439 c.138C>T synonymous_variant 0.25
gyrA 7585 p.Ser95Thr missense_variant 1.0
gyrA 7730 p.Arg143Ser missense_variant 0.25
gyrA 7763 c.462T>C synonymous_variant 0.25
gyrA 7775 c.474C>A synonymous_variant 0.4
gyrA 7784 c.483A>G synonymous_variant 0.33
gyrA 7823 c.522G>C synonymous_variant 0.4
gyrA 8096 c.795T>A synonymous_variant 0.43
gyrA 8099 c.798T>C synonymous_variant 0.43
gyrA 8111 c.810G>C synonymous_variant 0.75
gyrA 8121 c.820T>C synonymous_variant 0.5
gyrA 8129 c.828T>C synonymous_variant 0.5
gyrA 8135 c.834C>G synonymous_variant 0.5
gyrA 8156 c.855T>C synonymous_variant 0.5
gyrA 8177 c.876A>C synonymous_variant 0.38
gyrA 8219 c.918T>C synonymous_variant 0.3
gyrA 8225 c.924T>C synonymous_variant 0.33
gyrA 8234 c.933T>C synonymous_variant 0.33
gyrA 8247 p.Ile316Val missense_variant 0.3
gyrA 8264 c.963T>C synonymous_variant 0.25
gyrA 8267 c.966G>C synonymous_variant 0.33
gyrA 8270 c.969G>C synonymous_variant 0.33
gyrA 8276 c.975G>A synonymous_variant 0.33
gyrA 8283 p.Ile328Leu missense_variant 0.33
gyrA 8288 c.987T>C synonymous_variant 0.4
gyrA 8294 c.993T>C synonymous_variant 0.4
gyrA 8339 c.1038A>G synonymous_variant 0.4
gyrA 8340 p.Ala347Ser missense_variant 0.4
gyrA 8372 c.1071G>C synonymous_variant 0.5
gyrA 8375 c.1074G>C synonymous_variant 0.5
gyrA 8382 p.Leu361Met missense_variant 0.5
gyrA 8405 c.1104C>T synonymous_variant 0.5
gyrA 8420 c.1119T>C synonymous_variant 0.75
gyrA 8442 c.1141C>T synonymous_variant 0.4
gyrA 8453 c.1152A>C synonymous_variant 0.4
gyrA 8462 c.1161A>T synonymous_variant 0.4
gyrA 8465 c.1164C>G synonymous_variant 0.4
gyrA 8471 c.1170T>C synonymous_variant 0.4
gyrA 8472 c.1171C>T synonymous_variant 0.4
gyrA 8480 c.1179C>T synonymous_variant 0.4
gyrA 8486 c.1185T>C synonymous_variant 0.33
gyrA 8504 c.1203G>C synonymous_variant 0.43
gyrA 8636 c.1335A>C synonymous_variant 0.27
gyrA 8642 c.1341A>G synonymous_variant 0.27
gyrA 8672 c.1371A>G synonymous_variant 0.27
gyrA 8711 c.1410A>C synonymous_variant 0.2
gyrA 8714 c.1413A>G synonymous_variant 0.22
gyrA 8897 c.1596T>C synonymous_variant 0.5
gyrA 8903 c.1602T>C synonymous_variant 0.5
gyrA 9182 c.1881T>C synonymous_variant 0.33
gyrA 9191 c.1890G>C synonymous_variant 0.33
gyrA 9200 c.1899A>G synonymous_variant 0.4
gyrA 9204 p.Ser635Thr missense_variant 0.33
gyrA 9224 c.1923C>T synonymous_variant 0.29
gyrA 9230 c.1929T>C synonymous_variant 0.29
gyrA 9233 c.1932C>G synonymous_variant 0.33
gyrA 9239 c.1938C>T synonymous_variant 0.4
gyrA 9252 p.Val651Ile missense_variant 0.4
gyrA 9284 c.1983T>C synonymous_variant 0.4
gyrA 9291 c.1990C>T synonymous_variant 0.4
gyrA 9296 c.1995T>C synonymous_variant 0.4
gyrA 9299 c.1998G>C synonymous_variant 0.4
gyrA 9300 p.Ala667Ser missense_variant 0.4
gyrA 9304 p.Gly668Asp missense_variant 1.0
gyrA 9308 p.Asp669Glu missense_variant 0.5
gyrA 9323 c.2022C>A synonymous_variant 0.67
gyrA 9335 c.2034G>C synonymous_variant 0.67
gyrA 9365 c.2064G>A synonymous_variant 0.75
gyrA 9374 c.2073G>C synonymous_variant 1.0
gyrA 9377 c.2076A>G synonymous_variant 1.0
gyrA 9383 c.2082T>G synonymous_variant 1.0
gyrA 9386 c.2085T>C synonymous_variant 1.0
gyrA 9395 c.2094G>C synonymous_variant 1.0
gyrA 9398 c.2097T>C synonymous_variant 1.0
gyrA 9650 c.2349G>C synonymous_variant 0.67
gyrA 9656 c.2355C>G synonymous_variant 0.67
gyrA 9665 c.2364A>C synonymous_variant 0.5
gyrA 9666 p.Arg789Gly missense_variant 0.5
gyrA 9674 c.2373T>C synonymous_variant 0.5
gyrA 9704 c.2403T>G synonymous_variant 0.75
gyrA 9708 c.2407T>C synonymous_variant 0.67
gyrA 9716 c.2415T>C synonymous_variant 0.67
gyrA 9727 p.Gly809Glu missense_variant 1.0
gyrA 9729 p.Asp810Asn missense_variant 1.0
gyrA 9734 c.2433A>C synonymous_variant 1.0
fgd1 490797 c.15G>A synonymous_variant 0.5
fgd1 490800 c.18A>C synonymous_variant 0.5
fgd1 490803 c.21T>A synonymous_variant 0.6
fgd1 490812 c.30A>G synonymous_variant 0.6
fgd1 490815 c.33G>C synonymous_variant 0.6
fgd1 490827 c.45C>T synonymous_variant 0.5
fgd1 490848 c.66A>G synonymous_variant 0.38
fgd1 490851 c.69A>T synonymous_variant 0.38
fgd1 490868 p.Ala29Gly missense_variant 0.38
fgd1 491049 c.267T>C synonymous_variant 1.0
fgd1 491063 p.Gly94Ala missense_variant 0.5
fgd1 491130 c.348C>G synonymous_variant 0.4
fgd1 491151 c.369G>A synonymous_variant 0.67
fgd1 491173 c.391C>A synonymous_variant 0.67
fgd1 491181 c.399T>C synonymous_variant 0.67
fgd1 491184 c.402A>G synonymous_variant 0.67
fgd1 491191 p.Gly137Arg missense_variant 0.67
fgd1 491194 c.412_414delCTAinsTTG synonymous_variant 0.67
fgd1 491202 c.420G>C synonymous_variant 0.5
fgd1 491203 p.Gln141Glu missense_variant 0.5
fgd1 491212 p.Ser144Arg missense_variant 0.5
fgd1 491217 c.435T>C synonymous_variant 0.5
fgd1 491601 c.819T>C synonymous_variant 0.75
fgd1 491610 c.828A>G synonymous_variant 0.75
fgd1 491616 c.834A>G synonymous_variant 0.75
fgd1 491620 p.Ile280Val missense_variant 0.75
fgd1 491643 c.861G>A synonymous_variant 0.75
fgd1 491646 c.864G>C synonymous_variant 0.75
fgd1 491649 c.867C>T synonymous_variant 0.75
fgd1 491658 c.876A>G synonymous_variant 0.75
fgd1 491661 c.879C>G synonymous_variant 0.75
fgd1 491673 c.891A>C synonymous_variant 0.67
mshA 575623 c.276C>G synonymous_variant 0.4
mshA 575629 c.282A>G synonymous_variant 0.4
mshA 575632 c.285G>C synonymous_variant 0.4
mshA 575635 c.288A>C synonymous_variant 0.4
mshA 575638 c.291T>C synonymous_variant 0.4
mshA 575641 c.294A>G synonymous_variant 0.4
mshA 575647 c.300G>C synonymous_variant 0.4
mshA 575649 p.Val101Ala missense_variant 0.4
mshA 575659 c.312A>G synonymous_variant 0.5
mshA 575662 c.315C>G synonymous_variant 0.5
mshA 575665 c.318G>A synonymous_variant 0.4
mshA 575674 c.327G>C synonymous_variant 0.5
mshA 575770 c.423G>A synonymous_variant 0.67
mshA 575771 p.Val142Ser missense_variant 0.67
mshA 575779 c.432A>G synonymous_variant 0.67
mshA 575782 c.435G>C synonymous_variant 0.75
mshA 575809 c.462C>T synonymous_variant 1.0
mshA 575812 c.465C>T synonymous_variant 1.0
mshA 575821 c.474G>C synonymous_variant 1.0
mshA 575824 c.477T>G synonymous_variant 1.0
mshA 575830 c.483C>G synonymous_variant 1.0
mshA 575833 c.486C>G synonymous_variant 1.0
mshA 575845 c.498C>T synonymous_variant 1.0
mshA 575864 c.517T>C synonymous_variant 1.0
mshA 575884 c.537G>C synonymous_variant 1.0
mshA 575887 c.540G>C synonymous_variant 1.0
mshA 575893 c.546C>G synonymous_variant 0.67
mshA 575896 c.549G>C synonymous_variant 0.67
mshA 575908 c.561A>G synonymous_variant 0.67
ccsA 620340 c.450C>G synonymous_variant 0.33
ccsA 620346 c.456C>G synonymous_variant 0.43
ccsA 620362 p.Ala158Thr missense_variant 0.43
ccsA 620367 c.477T>C synonymous_variant 0.43
ccsA 620373 c.483C>T synonymous_variant 0.5
ccsA 620376 c.486G>C synonymous_variant 0.5
ccsA 620385 c.495G>C synonymous_variant 0.5
ccsA 620388 c.498A>G synonymous_variant 0.5
ccsA 620389 c.499C>T synonymous_variant 0.5
ccsA 620412 c.522T>C synonymous_variant 0.5
ccsA 620415 c.525T>C synonymous_variant 0.5
ccsA 620421 c.531G>C synonymous_variant 0.5
ccsA 620424 c.534G>C synonymous_variant 0.5
ccsA 620433 c.543C>G synonymous_variant 0.43
ccsA 620436 c.546T>A synonymous_variant 0.33
ccsA 620439 c.549T>C synonymous_variant 0.33
ccsA 620445 c.555A>G synonymous_variant 0.33
rpoB 760181 c.375T>C synonymous_variant 0.62
rpoB 760184 c.378A>G synonymous_variant 0.62
rpoB 760196 c.390C>G synonymous_variant 0.62
rpoB 760223 c.417T>C synonymous_variant 0.6
rpoB 760235 c.429T>C synonymous_variant 0.6
rpoB 760283 c.477G>C synonymous_variant 0.62
rpoB 760298 c.492G>C synonymous_variant 0.62
rpoB 760307 c.501T>C synonymous_variant 0.57
rpoB 760310 c.504G>C synonymous_variant 0.62
rpoB 760328 c.522G>C synonymous_variant 0.6
rpoB 760331 c.525G>C synonymous_variant 0.67
rpoB 760340 c.534G>T synonymous_variant 0.67
rpoB 760361 c.555T>C synonymous_variant 0.5
rpoB 760370 c.564C>G synonymous_variant 0.38
rpoB 760376 p.Asp190Glu missense_variant 0.43
rpoB 760380 p.Thr192Leu missense_variant 0.43
rpoB 760406 c.600G>C synonymous_variant 0.44
rpoB 760412 c.606C>G synonymous_variant 0.57
rpoB 760424 c.618C>G synonymous_variant 0.5
rpoB 760430 c.624T>C synonymous_variant 0.6
rpoB 760591 p.Val262Ala missense_variant 0.5
rpoB 760611 c.805T>C synonymous_variant 0.6
rpoB 760646 c.840C>G synonymous_variant 0.86
rpoB 760655 c.849A>G synonymous_variant 0.75
rpoB 760661 c.855A>C synonymous_variant 0.75
rpoB 760670 c.864G>C synonymous_variant 0.71
rpoB 760674 c.868T>C synonymous_variant 0.67
rpoB 760679 c.873A>G synonymous_variant 0.67
rpoB 760683 c.877T>C synonymous_variant 0.67
rpoB 760715 c.909C>G synonymous_variant 0.5
rpoB 760724 c.918T>C synonymous_variant 0.5
rpoB 760730 c.924T>C synonymous_variant 0.5
rpoB 760793 c.987A>G synonymous_variant 0.5
rpoB 760805 c.999G>C synonymous_variant 0.67
rpoB 760817 c.1011A>G synonymous_variant 0.67
rpoB 760820 c.1014T>C synonymous_variant 0.67
rpoB 760826 c.1020C>G synonymous_variant 0.67
rpoB 760830 c.1024T>C synonymous_variant 0.67
rpoB 760841 c.1035T>C synonymous_variant 0.75
rpoB 760845 p.Thr347Pro missense_variant 0.88
rpoB 760859 c.1053T>C synonymous_variant 0.88
rpoB 760862 c.1056G>C synonymous_variant 0.88
rpoB 760869 p.Val355Ile missense_variant 1.0
rpoB 760886 c.1080A>G synonymous_variant 1.0
rpoB 760925 c.1119T>C synonymous_variant 0.86
rpoB 760928 c.1122G>C synonymous_variant 0.75
rpoB 760931 c.1125C>G synonymous_variant 0.75
rpoB 760934 c.1128C>T synonymous_variant 0.75
rpoB 760946 c.1140A>G synonymous_variant 0.73
rpoB 760982 c.1176G>C synonymous_variant 0.83
rpoB 760985 c.1179G>C synonymous_variant 0.82
rpoB 760991 c.1185G>C synonymous_variant 0.82
rpoB 761006 c.1200C>G synonymous_variant 0.8
rpoB 761015 c.1209G>C synonymous_variant 0.78
rpoB 761021 c.1215G>C synonymous_variant 0.86
rpoB 761027 c.1221A>G synonymous_variant 0.86
rpoB 761036 c.1230G>C synonymous_variant 0.75
rpoB 761037 c.1231T>C synonymous_variant 0.75
rpoB 761057 c.1251G>C synonymous_variant 0.8
rpoB 761102 c.1296A>G synonymous_variant 0.8
rpoB 761129 c.1323G>C synonymous_variant 0.5
rpoB 761132 c.1326G>T synonymous_variant 0.5
rpoB 761133 c.1327T>C synonymous_variant 0.5
rpoB 761150 c.1344A>C synonymous_variant 0.5
rpoB 761153 c.1347G>C synonymous_variant 0.5
rpoB 761165 c.1359G>C synonymous_variant 0.43
rpoB 761180 c.1374A>C synonymous_variant 0.44
rpoB 761189 c.1383T>C synonymous_variant 0.43
rpoB 761195 c.1389G>C synonymous_variant 0.38
rpoB 761207 c.1401C>T synonymous_variant 0.29
rpoB 761213 c.1407G>C synonymous_variant 0.33
rpoB 761219 c.1413G>C synonymous_variant 0.5
rpoB 761249 c.1443A>G synonymous_variant 0.83
rpoB 761255 c.1449T>G synonymous_variant 0.83
rpoB 761261 c.1455G>T synonymous_variant 0.83
rpoB 761537 c.1731C>G synonymous_variant 0.33
rpoB 761570 c.1764T>C synonymous_variant 0.71
rpoB 761573 c.1767C>G synonymous_variant 0.71
rpoB 761579 c.1773G>C synonymous_variant 0.86
rpoB 761588 c.1782C>T synonymous_variant 1.0
rpoB 761606 c.1800C>G synonymous_variant 0.67
rpoB 761612 c.1806G>C synonymous_variant 0.67
rpoB 761615 c.1809A>C synonymous_variant 0.67
rpoB 761636 c.1830G>T synonymous_variant 0.62
rpoB 761645 c.1839C>G synonymous_variant 0.62
rpoB 761648 c.1842T>C synonymous_variant 0.62
rpoB 761657 c.1851C>G synonymous_variant 0.5
rpoB 761948 c.2142G>C synonymous_variant 1.0
rpoB 761954 c.2148C>G synonymous_variant 1.0
rpoB 762008 c.2202C>T synonymous_variant 0.8
rpoB 762014 c.2208C>T synonymous_variant 0.8
rpoB 762017 c.2211A>G synonymous_variant 0.8
rpoB 762053 c.2247T>C synonymous_variant 0.6
rpoB 762062 c.2256T>C synonymous_variant 0.5
rpoB 762065 c.2259T>C synonymous_variant 0.5
rpoB 762101 c.2295C>G synonymous_variant 0.33
rpoB 762114 p.Ile770Val missense_variant 0.43
rpoB 762131 c.2325C>G synonymous_variant 0.43
rpoB 762140 c.2334G>C synonymous_variant 0.33
rpoB 762143 c.2337T>C synonymous_variant 0.33
rpoB 762149 c.2343G>C synonymous_variant 0.43
rpoB 762167 c.2361T>C synonymous_variant 0.43
rpoB 762176 c.2370T>C synonymous_variant 0.43
rpoB 762185 c.2379G>C synonymous_variant 0.5
rpoB 762206 c.2400C>G synonymous_variant 1.0
rpoB 762233 c.2427G>C synonymous_variant 1.0
rpoB 762246 c.2440C>T synonymous_variant 0.8
rpoB 762254 c.2448T>G synonymous_variant 0.5
rpoB 762257 c.2451C>G synonymous_variant 0.5
rpoB 762266 c.2460T>C synonymous_variant 0.43
rpoB 762284 c.2478G>C synonymous_variant 0.29
rpoB 762293 c.2487T>C synonymous_variant 0.29
rpoB 762329 c.2523G>C synonymous_variant 0.29
rpoB 762338 c.2532T>C synonymous_variant 0.29
rpoB 762347 c.2541T>C synonymous_variant 0.33
rpoB 762362 p.Glu852Asp missense_variant 0.4
rpoC 762488 c.-882G>C upstream_gene_variant 0.29
rpoB 762489 p.Val895Gln missense_variant 0.29
rpoC 762509 c.-861T>G upstream_gene_variant 0.33
rpoB 762510 p.Ala902Pro missense_variant 0.33
rpoC 762521 c.-849C>T upstream_gene_variant 0.29
rpoC 762533 c.-837T>C upstream_gene_variant 0.29
rpoC 762536 c.-834T>C upstream_gene_variant 0.29
rpoC 762537 c.-833T>C upstream_gene_variant 0.29
rpoC 762551 c.-819C>G upstream_gene_variant 0.25
rpoC 762818 c.-552C>G upstream_gene_variant 0.67
rpoC 762827 c.-543G>C upstream_gene_variant 0.5
rpoC 762857 c.-513C>G upstream_gene_variant 0.43
rpoC 762860 c.-510G>C upstream_gene_variant 0.43
rpoC 762863 c.-507T>C upstream_gene_variant 0.44
rpoC 762929 c.-441G>C upstream_gene_variant 0.43
rpoC 762989 c.-381G>C upstream_gene_variant 0.4
rpoC 762995 c.-375G>T upstream_gene_variant 0.33
rpoC 763040 c.-330C>G upstream_gene_variant 0.22
rpoC 763067 c.-303C>G upstream_gene_variant 0.25
rpoC 763070 c.-300T>C upstream_gene_variant 0.27
rpoC 763085 c.-285C>G upstream_gene_variant 0.3
rpoC 763115 c.-255T>C upstream_gene_variant 0.33
rpoC 763136 c.-234C>T upstream_gene_variant 0.36
rpoC 763148 c.-222G>C upstream_gene_variant 0.33
rpoC 763158 c.-212C>T upstream_gene_variant 0.4
rpoC 763166 c.-204A>G upstream_gene_variant 0.44
rpoC 763190 c.-180C>T upstream_gene_variant 0.33
rpoC 763202 c.-168A>G upstream_gene_variant 0.25
rpoC 763205 c.-165G>C upstream_gene_variant 0.29
rpoC 763206 c.-164_-162delAGTinsTCG upstream_gene_variant 0.29
rpoC 763214 c.-156T>C upstream_gene_variant 0.4
rpoC 763226 c.-144A>G upstream_gene_variant 0.29
rpoC 763227 c.-143C>T upstream_gene_variant 0.29
rpoC 763238 c.-132T>C upstream_gene_variant 0.29
rpoC 763402 c.33C>G synonymous_variant 0.4
rpoC 763411 c.42T>G synonymous_variant 0.43
rpoC 763414 c.45T>C synonymous_variant 0.43
rpoC 763441 c.72C>T synonymous_variant 0.33
rpoC 763444 c.75T>C synonymous_variant 0.29
rpoC 763456 c.87A>G synonymous_variant 0.4
rpoC 763486 c.117T>G synonymous_variant 0.33
rpoC 763492 c.123G>C synonymous_variant 0.33
rpoC 763594 c.225C>T synonymous_variant 0.5
rpoC 763603 c.234C>T synonymous_variant 0.67
rpoC 763636 c.267T>C synonymous_variant 0.57
rpoC 763657 c.288G>A synonymous_variant 0.71
rpoC 763660 c.291T>G synonymous_variant 0.71
rpoC 763675 c.306C>G synonymous_variant 0.75
rpoC 763696 c.327T>C synonymous_variant 0.42
rpoC 763702 c.333C>G synonymous_variant 0.46
rpoC 763717 c.348T>C synonymous_variant 0.5
rpoC 763723 c.354G>C synonymous_variant 0.5
rpoC 763732 c.363C>G synonymous_variant 0.54
rpoC 763741 c.372C>T synonymous_variant 0.5
rpoC 763744 c.375G>C synonymous_variant 0.55
rpoC 763765 c.396T>C synonymous_variant 0.5
rpoC 763774 c.405G>C synonymous_variant 0.6
rpoC 763807 c.438T>C synonymous_variant 1.0
rpoC 763816 c.447C>G synonymous_variant 0.75
rpoC 763835 p.Ala156Met missense_variant 0.67
rpoC 763853 p.Val162Ile missense_variant 0.6
rpoC 763858 c.489A>G synonymous_variant 0.6
rpoC 763872 p.Gly168Ala missense_variant 0.71
rpoC 763876 p.Glu169Asp missense_variant 0.71
rpoC 763879 c.510A>G synonymous_variant 0.71
rpoC 763888 c.519G>C synonymous_variant 0.71
rpoC 763891 c.522G>C synonymous_variant 0.71
rpoC 763894 c.525A>G synonymous_variant 0.71
rpoC 763900 c.531G>C synonymous_variant 0.71
rpoC 763945 c.576T>C synonymous_variant 0.75
rpoC 763951 c.582G>C synonymous_variant 0.75
rpoC 763960 c.591T>C synonymous_variant 1.0
rpoC 764083 c.714A>G synonymous_variant 0.57
rpoC 764098 c.729A>G synonymous_variant 0.57
rpoC 764101 c.732C>G synonymous_variant 0.57
rpoC 764102 p.Val245Ile missense_variant 0.57
rpoC 764112 p.Tyr248Phe missense_variant 0.62
rpoC 764116 c.747C>T synonymous_variant 0.62
rpoC 764131 c.762T>C synonymous_variant 0.67
rpoC 764188 c.819A>G synonymous_variant 0.5
rpoC 764195 p.Ser276Ile missense_variant 0.5
rpoC 764203 c.834G>C synonymous_variant 0.5
rpoC 764206 c.837T>C synonymous_variant 0.5
rpoC 764215 c.846A>G synonymous_variant 0.55
rpoC 764236 c.867G>A synonymous_variant 0.43
rpoC 764248 c.879C>G synonymous_variant 0.5
rpoC 764257 c.888G>C synonymous_variant 0.43
rpoC 764266 c.897T>C synonymous_variant 0.33
rpoC 764269 c.900G>C synonymous_variant 0.4
rpoC 764272 c.903G>C synonymous_variant 0.4
rpoC 764278 c.909A>G synonymous_variant 0.67
rpoC 764338 c.969G>A synonymous_variant 0.43
rpoC 764353 c.984G>C synonymous_variant 0.43
rpoC 764365 c.996C>T synonymous_variant 0.5
rpoC 764405 c.1036A>C synonymous_variant 0.6
rpoC 764419 c.1050C>G synonymous_variant 0.5
rpoC 764428 c.1059G>C synonymous_variant 0.6
rpoC 764431 c.1062G>C synonymous_variant 0.6
rpoC 764434 c.1065A>G synonymous_variant 0.6
rpoC 764446 c.1077T>C synonymous_variant 0.5
rpoC 764449 c.1080G>C synonymous_variant 0.5
rpoC 764452 c.1083T>C synonymous_variant 0.5
rpoC 764458 c.1089G>C synonymous_variant 0.6
rpoC 764461 c.1092A>G synonymous_variant 0.6
rpoC 764489 c.1120C>T synonymous_variant 0.6
rpoC 764497 c.1128A>G synonymous_variant 0.5
rpoC 764650 c.1281G>C synonymous_variant 0.29
rpoC 764651 c.1282_1284delTCGinsAGC synonymous_variant 0.29
rpoC 764752 c.1383G>C synonymous_variant 0.38
rpoC 764764 c.1395T>C synonymous_variant 0.33
rpoC 764809 c.1440C>T synonymous_variant 0.5
rpoC 764815 c.1446A>G synonymous_variant 0.57
rpoC 764827 c.1458G>C synonymous_variant 0.67
rpoC 764858 c.1489T>C synonymous_variant 0.83
rpoC 764872 c.1503A>G synonymous_variant 1.0
rpoC 764888 c.1519T>C synonymous_variant 0.83
rpoC 764911 c.1542A>G synonymous_variant 0.86
rpoC 764932 c.1563C>A synonymous_variant 0.78
rpoC 764948 c.1579T>C synonymous_variant 0.67
rpoC 764968 c.1599T>C synonymous_variant 0.56
rpoC 765047 c.1678T>C synonymous_variant 0.4
rpoC 765055 c.1686C>G synonymous_variant 0.5
rpoC 765073 c.1704G>C synonymous_variant 0.4
rpoC 765076 c.1707A>G synonymous_variant 0.4
rpoC 765079 c.1710T>G synonymous_variant 0.4
rpoC 765082 c.1713G>C synonymous_variant 0.4
rpoC 765089 c.1720T>C synonymous_variant 0.4
rpoC 765103 c.1734G>T synonymous_variant 0.5
rpoC 765404 p.Leu679Val missense_variant 0.33
rpoC 765409 c.2040T>C synonymous_variant 0.33
rpoC 765421 c.2052C>G synonymous_variant 0.43
rpoC 765478 c.2109T>C synonymous_variant 0.88
rpoC 765499 c.2130C>G synonymous_variant 0.71
rpoC 765529 c.2160C>T synonymous_variant 0.75
rpoC 765541 c.2172C>G synonymous_variant 0.5
rpoC 765553 c.2184C>T synonymous_variant 0.5
rpoC 765556 c.2187G>C synonymous_variant 0.5
rpoC 765559 c.2190G>C synonymous_variant 0.5
rpoC 765580 c.2211G>C synonymous_variant 0.43
rpoC 765613 p.His748Gln missense_variant 0.6
rpoC 765625 c.2256C>G synonymous_variant 0.6
rpoC 765628 c.2259G>C synonymous_variant 0.6
rpoC 765631 p.Asp754Glu missense_variant 0.6
rpoC 765700 c.2331T>C synonymous_variant 0.83
rpoC 765734 c.2365T>C synonymous_variant 0.6
rpoC 765739 c.2370G>T synonymous_variant 0.5
rpoC 765751 c.2382C>G synonymous_variant 0.5
rpoC 765753 p.Asp795Ala missense_variant 0.5
rpoC 765772 c.2403C>G synonymous_variant 0.67
rpoC 765784 c.2415C>G synonymous_variant 0.5
rpoC 765787 c.2418C>T synonymous_variant 0.5
rpoC 765793 c.2424C>G synonymous_variant 0.38
rpoC 765796 c.2427C>T synonymous_variant 0.38
rpoC 765811 c.2442T>C synonymous_variant 0.29
rpoC 765814 c.2445A>G synonymous_variant 0.22
rpoC 765826 c.2457T>C synonymous_variant 0.43
rpoC 765835 c.2466C>T synonymous_variant 0.4
rpoC 765850 c.2481G>C synonymous_variant 0.47
rpoC 765883 c.2514C>G synonymous_variant 0.38
rpoC 765886 c.2517C>G synonymous_variant 0.38
rpoC 765892 c.2523T>C synonymous_variant 0.38
rpoC 766426 c.3057C>T synonymous_variant 0.5
rpoC 766447 c.3078T>C synonymous_variant 0.6
rpoC 766462 c.3093G>C synonymous_variant 0.6
rpoC 766483 c.3114G>C synonymous_variant 0.6
rpoC 766484 p.Val1039Thr missense_variant 0.6
rpoC 766492 c.3123T>C synonymous_variant 0.6
rpoC 766540 p.Asp1057Glu missense_variant 0.5
rpoC 766549 c.3180G>C synonymous_variant 0.5
rpoC 766573 c.3204T>C synonymous_variant 0.67
rpoC 766582 c.3213C>G synonymous_variant 0.67
rpoC 766583 p.Gly1072Ser missense_variant 0.67
rpoC 766591 c.3222A>G synonymous_variant 0.67
rpoC 766594 c.3225G>C synonymous_variant 0.67
rpoC 766597 c.3228C>G synonymous_variant 1.0
rpoC 766607 p.Ile1080Leu missense_variant 0.67
rpoC 766630 c.3261G>C synonymous_variant 0.5
rpoC 766738 c.3369G>C synonymous_variant 0.67
rpoC 766765 c.3396A>C synonymous_variant 1.0
rpoC 766774 c.3405T>C synonymous_variant 1.0
rpoC 766801 c.3432C>G synonymous_variant 0.75
rpoC 766804 c.3435A>G synonymous_variant 0.75
rpoC 766861 c.3492G>C synonymous_variant 1.0
rpoC 766864 c.3495G>C synonymous_variant 1.0
rpoC 766900 c.3531T>C synonymous_variant 1.0
rpoC 766933 c.3564A>G synonymous_variant 0.8
rpoC 766945 c.3576A>G synonymous_variant 0.67
rpoC 766996 c.3627C>T synonymous_variant 1.0
rpoC 767009 c.3640_3642delTCGinsAGC synonymous_variant 1.0
rpoC 767014 c.3645G>C synonymous_variant 1.0
rpoC 767033 c.3664_3666delTCGinsAGC synonymous_variant 1.0
rpoC 767059 c.3690T>G synonymous_variant 0.83
rpoC 767062 c.3693C>A synonymous_variant 0.83
rpoC 767098 c.3729T>C synonymous_variant 0.75
rpoC 767119 c.3750A>G synonymous_variant 0.6
rpoC 767134 c.3765C>A synonymous_variant 0.6
mmpL5 775639 p.Ile948Val missense_variant 1.0
mmpL5 775975 c.2506T>C synonymous_variant 0.43
mmpL5 775981 p.Leu834Met missense_variant 0.43
mmpL5 775991 c.2490G>A synonymous_variant 0.33
mmpL5 775997 c.2484T>C synonymous_variant 0.33
mmpL5 776000 p.Leu827Ile missense_variant 0.33
mmpL5 776005 p.Ile826Leu missense_variant 0.33
mmpL5 776009 c.2472A>G synonymous_variant 0.5
mmpL5 776030 c.2451G>A synonymous_variant 0.5
mmpL5 776033 c.2448C>T synonymous_variant 0.29
mmpL5 776036 c.2445G>C synonymous_variant 0.33
mmpL5 776039 c.2442C>G synonymous_variant 0.33
mmpL5 776053 c.2428T>C synonymous_variant 0.4
mmpL5 776672 c.1809G>C synonymous_variant 0.25
mmpL5 776675 c.1806G>A synonymous_variant 0.25
mmpL5 776684 c.1797G>A synonymous_variant 0.29
mmpL5 776687 p.Trp598Phe missense_variant 0.29
mmpL5 776695 p.Val596Ile missense_variant 0.29
mmpL5 776738 c.1743C>T synonymous_variant 0.33
mmpL5 776744 c.1735_1737delCGCinsAGA synonymous_variant 0.4
mmpL5 776756 p.Asp575Glu missense_variant 0.4
mmpL5 777158 c.1323C>G synonymous_variant 0.67
mmpL5 777164 c.1317C>G synonymous_variant 1.0
mmpL5 777170 c.1311T>C synonymous_variant 1.0
mmpL5 777176 p.Glu435Asp missense_variant 1.0
mmpL5 777191 c.1290C>G synonymous_variant 1.0
mmpL5 777194 c.1287A>G synonymous_variant 1.0
mmpL5 777206 c.1275A>G synonymous_variant 1.0
mmpL5 777212 p.Ala423Thr missense_variant 1.0
mmpL5 777215 c.1266C>G synonymous_variant 1.0
mmpL5 777218 c.1263G>A synonymous_variant 1.0
rpsL 781395 c.-165T>C upstream_gene_variant 1.0
rpsL 781595 c.36T>C synonymous_variant 0.29
rpsL 781605 p.Ile16Val missense_variant 0.25
rpsL 781608 p.Ser17Ala missense_variant 0.25
rpsL 781628 c.69T>C synonymous_variant 0.25
rpsL 781631 c.72G>C synonymous_variant 0.25
rpsL 781649 c.90T>C synonymous_variant 0.38
rpsL 781655 c.96T>C synonymous_variant 0.5
rpsL 781682 c.123T>C synonymous_variant 0.5
rpsL 781700 c.141G>C synonymous_variant 0.75
rpsL 781703 c.144G>T synonymous_variant 0.67
rpsL 781715 c.156T>C synonymous_variant 0.33
rpsL 781736 c.177T>C synonymous_variant 0.33
rpsL 781742 c.183C>T synonymous_variant 0.33
rpsL 781748 c.189C>G synonymous_variant 0.33
rpsL 781754 c.195G>C synonymous_variant 0.33
rpsL 781760 c.201T>C synonymous_variant 0.33
rpsL 781772 c.213C>A synonymous_variant 0.33
rpsL 781808 c.249C>T synonymous_variant 0.44
rpsL 781811 c.252C>T synonymous_variant 0.56
rpsL 781832 c.273T>C synonymous_variant 0.56
rpsL 781838 c.279G>C synonymous_variant 0.56
rpsL 781841 c.282C>G synonymous_variant 0.56
rpsL 781865 c.306G>C synonymous_variant 0.5
rpsL 781868 c.309T>C synonymous_variant 0.5
rpsL 781871 c.312G>C synonymous_variant 0.5
rpsL 781877 c.318T>C synonymous_variant 0.56
rpsL 781892 c.333A>G synonymous_variant 0.5
rpsL 781898 c.339A>T synonymous_variant 0.5
rplC 800612 c.-197A>G upstream_gene_variant 0.44
rplC 800618 c.-191T>C upstream_gene_variant 0.44
rplC 800627 c.-182C>T upstream_gene_variant 0.62
rplC 800648 c.-161A>T upstream_gene_variant 0.71
rplC 800654 c.-155T>C upstream_gene_variant 0.71
rplC 800693 c.-116A>G upstream_gene_variant 0.8
rplC 800703 c.-106T>C upstream_gene_variant 0.8
rplC 800715 c.-94A>C upstream_gene_variant 0.8
rplC 800720 c.-89T>C upstream_gene_variant 0.57
rplC 800723 c.-86C>G upstream_gene_variant 0.62
rplC 800747 c.-62C>G upstream_gene_variant 0.6
rplC 800771 c.-38C>T upstream_gene_variant 0.6
rplC 800794 c.-15A>G upstream_gene_variant 0.4
rplC 800796 c.-13A>G upstream_gene_variant 0.4
rplC 800798 c.-10_-9delGG upstream_gene_variant 0.4
rplC 800814 c.6A>G synonymous_variant 0.67
rplC 800817 c.9A>T synonymous_variant 0.67
rplC 800844 c.36T>C synonymous_variant 0.88
rplC 800865 c.57A>G synonymous_variant 0.88
rplC 800867 p.Ser20Asn missense_variant 0.7
rplC 800874 c.66A>G synonymous_variant 0.7
rplC 800875 p.Val23Ile missense_variant 0.7
rplC 800880 c.72A>G synonymous_variant 0.78
rplC 800889 c.81C>G synonymous_variant 0.78
rplC 800892 c.84G>C synonymous_variant 0.78
rplC 800907 c.99C>G synonymous_variant 0.62
fbiC 1303509 c.579G>C synonymous_variant 0.5
fbiC 1303512 c.582T>C synonymous_variant 0.5
fbiC 1303521 c.591C>T synonymous_variant 0.5
fbiC 1303530 c.600G>A synonymous_variant 0.4
fbiC 1303534 p.Ser202Ala missense_variant 0.5
fbiC 1303539 c.609G>C synonymous_variant 0.5
fbiC 1303545 c.615A>G synonymous_variant 0.57
fbiC 1303575 c.645G>C synonymous_variant 0.6
fbiC 1303728 c.798G>A synonymous_variant 0.67
fbiC 1303731 c.801A>C synonymous_variant 0.67
fbiC 1303732 p.Ser268Ala missense_variant 0.67
fbiC 1303737 c.807G>A synonymous_variant 0.67
fbiC 1303746 c.816T>C synonymous_variant 0.67
fbiC 1303749 c.819G>C synonymous_variant 0.67
fbiC 1303752 c.822A>G synonymous_variant 0.67
fbiC 1303755 c.825T>C synonymous_variant 0.67
fbiC 1303761 c.831T>C synonymous_variant 0.8
fbiC 1303785 c.855G>C synonymous_variant 0.6
fbiC 1303789 p.Ile287Val missense_variant 0.6
fbiC 1303797 c.867A>G synonymous_variant 0.67
fbiC 1303818 c.888C>G synonymous_variant 0.78
fbiC 1303836 c.906G>C synonymous_variant 0.78
fbiC 1303845 c.915C>G synonymous_variant 0.78
fbiC 1303846 p.Phe306Val missense_variant 0.78
fbiC 1303854 c.924T>C synonymous_variant 0.67
fbiC 1303860 c.930A>C synonymous_variant 0.62
fbiC 1303884 c.954T>G synonymous_variant 0.57
fbiC 1303905 c.975G>C synonymous_variant 0.33
fbiC 1303914 c.984C>G synonymous_variant 0.4
fbiC 1303944 c.1014G>C synonymous_variant 0.4
fbiC 1303947 c.1017T>G synonymous_variant 0.4
fbiC 1303948 p.Gly340Arg missense_variant 0.4
fbiC 1303953 p.Asp341Glu missense_variant 0.5
fbiC 1303954 p.Glu342Gln missense_variant 0.5
fbiC 1303961 p.Arg344Leu missense_variant 0.5
fbiC 1303971 c.1041T>C synonymous_variant 0.5
fbiC 1303980 c.1050G>A synonymous_variant 0.75
fbiC 1304004 c.1074A>G synonymous_variant 1.0
fbiC 1304008 c.1078T>C synonymous_variant 1.0
fbiC 1304580 c.1650T>C synonymous_variant 0.5
fbiC 1304613 c.1683T>C synonymous_variant 0.43
fbiC 1304634 c.1704C>G synonymous_variant 0.38
fbiC 1304640 c.1710A>C synonymous_variant 0.33
fbiC 1304646 c.1716T>C synonymous_variant 0.33
fbiC 1304658 c.1728C>G synonymous_variant 0.38
fbiC 1304661 c.1731C>T synonymous_variant 0.38
fbiC 1304670 c.1740G>C synonymous_variant 0.29
fbiC 1304671 p.Val581Thr missense_variant 0.29
fbiC 1304675 p.Gly582Asp missense_variant 0.29
fbiC 1304691 c.1761G>C synonymous_variant 0.22
fbiC 1304694 c.1764A>C synonymous_variant 0.22
fbiC 1304703 c.1773C>G synonymous_variant 0.25
fbiC 1304916 c.1986T>C synonymous_variant 0.25
fbiC 1304928 c.1998T>C synonymous_variant 0.29
fbiC 1304937 c.2007G>C synonymous_variant 0.33
fbiC 1304958 c.2028T>G synonymous_variant 0.67
fbiC 1304983 c.2053C>T synonymous_variant 0.67
fbiC 1304994 c.2064A>G synonymous_variant 0.5
fbiC 1304995 p.Leu689Met missense_variant 0.5
fbiC 1305006 c.2076A>G synonymous_variant 0.5
fbiC 1305372 c.2442G>A synonymous_variant 0.4
fbiC 1305384 c.2454G>C synonymous_variant 0.5
fbiC 1305396 c.2466C>G synonymous_variant 0.67
fbiC 1305405 c.2475A>G synonymous_variant 0.67
rrs 1471923 n.78T>C non_coding_transcript_exon_variant 0.45
rrs 1471925 n.80T>C non_coding_transcript_exon_variant 0.5
rrs 1471932 n.87A>G non_coding_transcript_exon_variant 0.45
rrs 1471934 n.89A>G non_coding_transcript_exon_variant 0.45
rrs 1471969 n.124T>C non_coding_transcript_exon_variant 0.29
rrs 1471970 n.125G>A non_coding_transcript_exon_variant 0.29
rrs 1472075 n.230A>G non_coding_transcript_exon_variant 0.4
rrs 1472108 n.263C>T non_coding_transcript_exon_variant 0.5
rrs 1472969 n.1124A>G non_coding_transcript_exon_variant 0.67
rrs 1472970 n.1125C>G non_coding_transcript_exon_variant 0.67
rrs 1472977 n.1132G>C non_coding_transcript_exon_variant 0.7
rrs 1472978 n.1133T>C non_coding_transcript_exon_variant 0.73
rrs 1473105 n.1260G>A non_coding_transcript_exon_variant 0.71
rrs 1473145 n.1300C>T non_coding_transcript_exon_variant 0.81
rrs 1473166 n.1321G>A non_coding_transcript_exon_variant 0.86
rrs 1473290 n.1445C>T non_coding_transcript_exon_variant 0.67
rrl 1473668 n.11C>T non_coding_transcript_exon_variant 0.5
rrl 1473756 n.99G>A non_coding_transcript_exon_variant 0.83
rrl 1473758 n.101G>T non_coding_transcript_exon_variant 0.83
rrl 1473806 n.149C>T non_coding_transcript_exon_variant 0.6
rrl 1473986 n.329T>C non_coding_transcript_exon_variant 0.4
rrl 1473987 n.330G>A non_coding_transcript_exon_variant 0.4
rrl 1473995 n.338G>T non_coding_transcript_exon_variant 0.4
rrl 1474001 n.344C>T non_coding_transcript_exon_variant 0.4
rrl 1474009 n.352A>G non_coding_transcript_exon_variant 0.4
rrl 1474012 n.355C>T non_coding_transcript_exon_variant 1.0
rrl 1474093 n.436G>T non_coding_transcript_exon_variant 0.62
rrl 1474099 n.442G>A non_coding_transcript_exon_variant 0.62
rrl 1474103 n.446A>T non_coding_transcript_exon_variant 0.62
rrl 1474140 n.483C>T non_coding_transcript_exon_variant 0.4
rrl 1474151 n.494C>T non_coding_transcript_exon_variant 0.5
rrl 1474639 n.982G>A non_coding_transcript_exon_variant 0.67
rrl 1474794 n.1137C>T non_coding_transcript_exon_variant 0.86
rrl 1474812 n.1155G>A non_coding_transcript_exon_variant 0.77
rrl 1474823 n.1166C>T non_coding_transcript_exon_variant 0.73
rrl 1474831 n.1174A>G non_coding_transcript_exon_variant 0.71
rrl 1474904 n.1247G>A non_coding_transcript_exon_variant 0.8
rrl 1474956 n.1299C>T non_coding_transcript_exon_variant 0.75
rrl 1474958 n.1301A>G non_coding_transcript_exon_variant 0.75
rrl 1474960 n.1303C>G non_coding_transcript_exon_variant 0.75
rrl 1474963 n.1306G>T non_coding_transcript_exon_variant 0.75
rrl 1474964 n.1307T>A non_coding_transcript_exon_variant 0.75
rrl 1474965 n.1308G>C non_coding_transcript_exon_variant 0.75
rrl 1474970 n.1313G>A non_coding_transcript_exon_variant 0.75
rrl 1475006 n.1349A>T non_coding_transcript_exon_variant 0.57
rrl 1475061 n.1404C>T non_coding_transcript_exon_variant 0.33
rrl 1475199 n.1542G>A non_coding_transcript_exon_variant 0.6
rrl 1475206 n.1549C>T non_coding_transcript_exon_variant 0.56
rrl 1475209 n.1552G>C non_coding_transcript_exon_variant 0.5
rrl 1475213 n.1556C>T non_coding_transcript_exon_variant 0.5
rrl 1475249 n.1592T>C non_coding_transcript_exon_variant 0.33
rrl 1475252 n.1595C>T non_coding_transcript_exon_variant 0.33
rrl 1475291 n.1634A>C non_coding_transcript_exon_variant 0.38
rrl 1475313 n.1656G>A non_coding_transcript_exon_variant 0.55
rrl 1475315 n.1658A>T non_coding_transcript_exon_variant 0.6
rrl 1475355 n.1698C>T non_coding_transcript_exon_variant 0.71
rrl 1475369 n.1712G>T non_coding_transcript_exon_variant 0.8
rrl 1475402 n.1745C>T non_coding_transcript_exon_variant 0.85
rrl 1475419 n.1762C>T non_coding_transcript_exon_variant 0.75
rrl 1475429 n.1772G>A non_coding_transcript_exon_variant 0.77
rrl 1475436 n.1779C>T non_coding_transcript_exon_variant 0.69
rrl 1475483 n.1826C>T non_coding_transcript_exon_variant 0.62
rrl 1475505 n.1848G>A non_coding_transcript_exon_variant 0.6
rrl 1475526 n.1869C>A non_coding_transcript_exon_variant 0.54
rrl 1475599 n.1942A>G non_coding_transcript_exon_variant 0.33
rrl 1475608 n.1951T>C non_coding_transcript_exon_variant 0.25
rrl 1475642 n.1985T>C non_coding_transcript_exon_variant 0.25
rrl 1475657 n.2000A>G non_coding_transcript_exon_variant 0.33
rrl 1475659 n.2002G>T non_coding_transcript_exon_variant 0.33
rrl 1475765 n.2111delG non_coding_transcript_exon_variant 0.38
rrl 1475881 n.2224T>C non_coding_transcript_exon_variant 0.36
rrl 1475988 n.2331A>G non_coding_transcript_exon_variant 1.0
rrl 1476086 n.2429G>A non_coding_transcript_exon_variant 0.5
rrl 1476089 n.2432T>C non_coding_transcript_exon_variant 0.4
rrl 1476095 n.2438C>G non_coding_transcript_exon_variant 0.4
rrl 1476115 n.2458T>C non_coding_transcript_exon_variant 0.4
rrl 1476117 n.2460G>C non_coding_transcript_exon_variant 0.33
rrl 1476214 n.2557G>A non_coding_transcript_exon_variant 0.29
rrl 1476224 n.2567A>G non_coding_transcript_exon_variant 0.43
rrl 1476281 n.2624T>C non_coding_transcript_exon_variant 0.43
rrl 1476583 n.2926G>A non_coding_transcript_exon_variant 0.64
rrl 1476584 n.2927C>T non_coding_transcript_exon_variant 0.64
rrl 1476594 n.2937C>T non_coding_transcript_exon_variant 0.7
rrl 1476597 n.2940G>A non_coding_transcript_exon_variant 0.7
rrl 1476603 n.2946G>A non_coding_transcript_exon_variant 0.8
rrl 1476608 n.2951C>G non_coding_transcript_exon_variant 0.8
rrl 1476628 n.2971T>A non_coding_transcript_exon_variant 0.75
rrl 1476689 n.3032A>T non_coding_transcript_exon_variant 0.57
rrl 1476690 n.3033C>T non_coding_transcript_exon_variant 0.57
rrl 1476693 n.3036G>A non_coding_transcript_exon_variant 0.57
rrl 1476695 n.3038T>A non_coding_transcript_exon_variant 0.57
rrl 1476716 n.3059A>C non_coding_transcript_exon_variant 0.56
rrl 1476726 n.3069A>G non_coding_transcript_exon_variant 0.5
rrl 1476732 n.3075T>C non_coding_transcript_exon_variant 0.5
rrl 1476750 n.3093T>C non_coding_transcript_exon_variant 0.43
rrl 1476755 n.3098G>A non_coding_transcript_exon_variant 0.43
rrl 1476759 n.3102T>C non_coding_transcript_exon_variant 0.43
rrl 1476770 n.3113T>C non_coding_transcript_exon_variant 0.33
rrl 1476771 n.3114G>A non_coding_transcript_exon_variant 0.33
fabG1 1673482 p.Ser15Ala missense_variant 0.5
inhA 1673487 c.-715T>C upstream_gene_variant 0.5
inhA 1673490 c.-712A>G upstream_gene_variant 0.6
inhA 1673523 c.-679G>T upstream_gene_variant 0.75
inhA 1673535 c.-667A>G upstream_gene_variant 0.67
inhA 1673547 c.-655T>C upstream_gene_variant 0.4
inhA 1673568 c.-634C>G upstream_gene_variant 0.4
inhA 1673574 c.-628C>G upstream_gene_variant 0.4
inhA 1674537 c.336C>G synonymous_variant 0.6
inhA 1674542 p.Ala114Glu missense_variant 0.6
inhA 1674546 c.345T>C synonymous_variant 0.6
inhA 1674549 c.348G>C synonymous_variant 0.6
inhA 1674552 c.351C>G synonymous_variant 0.6
inhA 1674555 c.354G>A synonymous_variant 0.67
inhA 1674561 c.360C>T synonymous_variant 0.62
inhA 1674582 c.381T>C synonymous_variant 0.7
inhA 1674585 c.384T>C synonymous_variant 0.67
inhA 1674589 p.Met130Leu missense_variant 0.67
inhA 1674601 p.Leu134Thr missense_variant 0.7
inhA 1674624 c.423A>C synonymous_variant 0.5
inhA 1674630 c.429C>G synonymous_variant 0.5
inhA 1674660 c.459G>C synonymous_variant 0.38
inhA 1674672 c.471C>G synonymous_variant 0.43
inhA 1674703 c.502T>C synonymous_variant 0.43
inhA 1674708 c.507G>A synonymous_variant 0.5
inhA 1674718 c.517A>C synonymous_variant 0.6
inhA 1674723 c.522C>T synonymous_variant 0.6
inhA 1674738 c.537C>G synonymous_variant 0.67
inhA 1674741 c.540C>T synonymous_variant 0.67
inhA 1674746 p.Tyr182Phe missense_variant 0.67
inhA 1674750 c.549T>C synonymous_variant 0.67
inhA 1674753 c.552G>C synonymous_variant 0.67
inhA 1674756 c.555T>C synonymous_variant 0.67
inhA 1674759 c.558G>C synonymous_variant 0.67
inhA 1674774 c.573A>G synonymous_variant 1.0
inhA 1674780 c.579T>G synonymous_variant 1.0
inhA 1674789 c.588G>C synonymous_variant 0.67
inhA 1674828 c.627G>A synonymous_variant 0.4
inhA 1674846 p.Ile215Met missense_variant 0.5
inhA 1674855 c.654C>G synonymous_variant 0.5
inhA 1674864 c.663C>T synonymous_variant 0.62
inhA 1674870 c.669T>C synonymous_variant 0.57
inhA 1674879 c.678T>C synonymous_variant 0.5
inhA 1674903 c.702T>C synonymous_variant 0.57
inhA 1674904 p.Ala235Pro missense_variant 0.57
inhA 1674909 c.708G>A synonymous_variant 0.57
inhA 1674942 c.741T>G synonymous_variant 0.67
rpsA 1833568 c.27G>C synonymous_variant 0.38
rpsA 1833589 c.48A>T synonymous_variant 0.42
rpsA 1833595 c.54T>C synonymous_variant 0.36
rpsA 1833661 c.120A>G synonymous_variant 0.62
rpsA 1833667 c.126C>G synonymous_variant 0.58
rpsA 1833721 c.180A>G synonymous_variant 0.57
rpsA 1833724 c.183C>G synonymous_variant 0.5
rpsA 1833727 c.186G>C synonymous_variant 0.6
rpsA 1833742 c.201A>G synonymous_variant 0.78
rpsA 1833745 c.204G>C synonymous_variant 0.78
rpsA 1833748 c.207C>G synonymous_variant 0.78
rpsA 1833787 c.246C>G synonymous_variant 0.62
rpsA 1833790 c.249T>C synonymous_variant 0.57
rpsA 1833802 c.261A>G synonymous_variant 0.5
rpsA 1833811 c.270G>T synonymous_variant 0.56
rpsA 1833838 c.297G>C synonymous_variant 0.5
rpsA 1833841 c.300C>G synonymous_variant 0.5
rpsA 1833847 c.306C>G synonymous_variant 0.43
rpsA 1833856 c.315A>G synonymous_variant 0.43
rpsA 1833874 c.333T>C synonymous_variant 0.5
rpsA 1833928 c.387G>C synonymous_variant 0.5
rpsA 1833940 c.399C>G synonymous_variant 0.5
rpsA 1833971 c.430C>T synonymous_variant 0.71
rpsA 1833979 c.438T>C synonymous_variant 0.78
rpsA 1834000 c.459G>C synonymous_variant 0.82
rpsA 1834021 c.480C>T synonymous_variant 0.88
rpsA 1834030 c.489C>G synonymous_variant 0.78
rpsA 1834099 c.558C>G synonymous_variant 0.6
rpsA 1834102 c.561T>C synonymous_variant 0.5
rpsA 1834105 c.564C>G synonymous_variant 0.5
rpsA 1834108 c.567C>G synonymous_variant 0.5
rpsA 1834249 c.708T>C synonymous_variant 0.5
rpsA 1834261 c.720A>G synonymous_variant 0.6
rpsA 1834264 c.723G>C synonymous_variant 0.6
rpsA 1834303 c.762T>C synonymous_variant 0.57
rpsA 1834306 c.765T>C synonymous_variant 0.57
rpsA 1834348 c.807T>C synonymous_variant 0.6
rpsA 1834366 c.825A>G synonymous_variant 0.67
rpsA 1834375 c.834G>A synonymous_variant 0.75
rpsA 1834378 c.837T>C synonymous_variant 0.71
rpsA 1834396 c.855G>C synonymous_variant 0.62
rpsA 1834411 c.870T>C synonymous_variant 0.8
rpsA 1834417 c.876G>C synonymous_variant 0.75
rpsA 1834423 c.882G>C synonymous_variant 0.67
rpsA 1834465 c.924T>C synonymous_variant 0.6
rpsA 1834468 c.927A>G synonymous_variant 0.6
rpsA 1834489 c.948T>C synonymous_variant 0.5
rpsA 1834501 c.960G>C synonymous_variant 0.5
rpsA 1834510 c.969C>T synonymous_variant 0.5
rpsA 1834513 c.972C>G synonymous_variant 0.43
rpsA 1834528 c.987T>C synonymous_variant 0.38
rpsA 1834540 c.999G>C synonymous_variant 0.33
rpsA 1834546 c.1005T>C synonymous_variant 0.33
rpsA 1834684 c.1143C>T synonymous_variant 0.4
rpsA 1834690 c.1149T>C synonymous_variant 0.33
tlyA 1917972 c.33A>G synonymous_variant 1.0
ndh 2101744 p.Asp433Glu missense_variant 0.5
ndh 2101756 c.1287G>C synonymous_variant 0.43
ndh 2101765 c.1278C>G synonymous_variant 0.38
ndh 2101768 c.1275C>A synonymous_variant 0.38
ndh 2101771 c.1272T>G synonymous_variant 0.38
ndh 2101774 c.1269T>C synonymous_variant 0.38
ndh 2101777 c.1266C>G synonymous_variant 0.38
ndh 2101783 c.1260T>A synonymous_variant 0.38
ndh 2101804 c.1239T>G synonymous_variant 0.38
ndh 2101808 p.Thr412Ser missense_variant 0.38
ndh 2101830 p.Ile405Val missense_variant 0.33
ndh 2101912 c.1131G>C synonymous_variant 0.33
ndh 2101920 c.1123A>C synonymous_variant 0.25
ndh 2101924 c.1119T>G synonymous_variant 0.33
ndh 2101939 c.1104A>G synonymous_variant 0.27
ndh 2101960 c.1083A>G synonymous_variant 0.2
ndh 2101966 c.1077T>G synonymous_variant 0.25
ndh 2101972 c.1071G>C synonymous_variant 0.25
ndh 2101988 p.Ala352Asp missense_variant 0.25
ndh 2101990 c.1053G>C synonymous_variant 0.25
ndh 2101993 c.1050A>G synonymous_variant 0.29
ndh 2102990 p.Val18Ala missense_variant 1.0
katG 2155695 c.417C>G synonymous_variant 0.4
katG 2155704 c.408C>G synonymous_variant 0.4
katG 2155716 c.396T>G synonymous_variant 0.4
katG 2155722 c.390G>C synonymous_variant 0.4
katG 2155728 c.384G>C synonymous_variant 0.4
katG 2156117 c.-6A>G upstream_gene_variant 1.0
PPE35 2169840 p.Gly258Asp missense_variant 1.0
pncA 2288937 p.Ala102Val missense_variant 1.0
pncA 2289930 c.-689A>G upstream_gene_variant 0.67
pncA 2289943 c.-702T>G upstream_gene_variant 0.5
pncA 2289948 c.-707C>T upstream_gene_variant 0.5
pncA 2289949 c.-708A>G upstream_gene_variant 0.5
pncA 2289987 c.-746C>T upstream_gene_variant 0.4
pncA 2289991 c.-750G>C upstream_gene_variant 0.4
pncA 2289994 c.-753A>G upstream_gene_variant 0.4
pncA 2289997 c.-756G>C upstream_gene_variant 0.5
pncA 2290009 c.-768A>G upstream_gene_variant 0.6
pncA 2290015 c.-774A>C upstream_gene_variant 0.5
pncA 2290024 c.-783C>G upstream_gene_variant 0.5
pncA 2290030 c.-789T>C upstream_gene_variant 0.5
kasA 2518190 p.Ser26Ala missense_variant 0.6
kasA 2518199 p.Ile29Val missense_variant 0.6
kasA 2518220 c.106C>T synonymous_variant 0.5
kasA 2518234 c.120G>A synonymous_variant 0.5
kasA 2518248 p.Ala45Val missense_variant 0.5
kasA 2518261 p.Glu49Asp missense_variant 0.5
kasA 2518263 p.Phe50Tyr missense_variant 0.4
kasA 2518265 p.Val51Ile missense_variant 0.5
kasA 2518459 c.345T>C synonymous_variant 0.67
kasA 2518462 c.348A>C synonymous_variant 0.67
kasA 2518468 c.354A>C synonymous_variant 0.67
kasA 2518474 c.360G>A synonymous_variant 0.75
kasA 2518480 c.366T>C synonymous_variant 0.5
kasA 2518483 c.369C>G synonymous_variant 0.5
kasA 2518504 c.390T>C synonymous_variant 0.43
kasA 2518506 p.Ala131Glu missense_variant 0.43
kasA 2518519 c.405G>C synonymous_variant 0.5
kasA 2518528 c.414C>G synonymous_variant 0.43
kasA 2518540 c.426T>C synonymous_variant 0.43
kasA 2518561 c.447T>C synonymous_variant 0.5
kasA 2518567 c.453G>C synonymous_variant 0.5
kasA 2518768 c.654C>T synonymous_variant 0.5
kasA 2518777 c.663C>T synonymous_variant 0.5
kasA 2518783 c.669T>C synonymous_variant 0.6
kasA 2518789 c.675G>C synonymous_variant 0.5
kasA 2518792 c.678C>A synonymous_variant 0.5
kasA 2518795 c.681C>G synonymous_variant 0.33
kasA 2518825 c.711T>C synonymous_variant 0.29
kasA 2519062 c.948T>G synonymous_variant 1.0
kasA 2519068 c.954C>T synonymous_variant 1.0
kasA 2519072 p.Ala320Thr missense_variant 1.0
kasA 2519107 c.993T>C synonymous_variant 1.0
kasA 2519108 p.Asp332Gln missense_variant 1.0
kasA 2519122 c.1008G>C synonymous_variant 1.0
kasA 2519137 c.1023T>G synonymous_variant 1.0
ahpC 2726638 p.Ala149Val missense_variant 0.67
ahpC 2726645 c.453C>G synonymous_variant 0.5
ahpC 2726657 c.465A>C synonymous_variant 0.5
folC 2747739 c.-141G>A upstream_gene_variant 0.5
folC 2747745 c.-147A>C upstream_gene_variant 0.5
folC 2747748 c.-150C>G upstream_gene_variant 0.5
folC 2747751 c.-154_-153delGCinsCG upstream_gene_variant 0.5
folC 2747759 c.-161T>C upstream_gene_variant 0.5
folC 2747760 c.-162G>T upstream_gene_variant 0.5
folC 2747772 c.-174C>G upstream_gene_variant 0.5
folC 2747790 c.-192G>C upstream_gene_variant 0.5
pepQ 2860483 c.-65A>T upstream_gene_variant 0.5
Rv2752c 3065946 p.Gly82Ala missense_variant 0.4
Rv2752c 3065955 c.235_237delTTGinsCTC synonymous_variant 0.43
Rv2752c 3065979 c.213T>C synonymous_variant 0.29
Rv2752c 3065988 c.204A>G synonymous_variant 0.33
Rv2752c 3065993 p.Val67Ile missense_variant 0.4
Rv2752c 3066018 c.174T>C synonymous_variant 0.5
Rv2752c 3066024 c.168T>G synonymous_variant 0.5
Rv2752c 3066040 p.Gly51Thr missense_variant 1.0
Rv2752c 3066042 c.150T>C synonymous_variant 1.0
Rv2752c 3066045 c.147T>C synonymous_variant 1.0
Rv2752c 3066050 p.Leu48Met missense_variant 1.0
Rv2752c 3066054 c.138T>G synonymous_variant 1.0
Rv2752c 3066066 c.126T>C synonymous_variant 1.0
Rv2752c 3066075 c.117A>G synonymous_variant 0.75
Rv2752c 3066093 c.99T>C synonymous_variant 0.75
Rv2752c 3066099 p.Met31Ile missense_variant 0.4
thyX 3067252 p.Val232Met missense_variant 0.5
thyX 3067274 c.672C>G synonymous_variant 0.5
thyX 3067277 c.669C>G synonymous_variant 0.4
thyX 3067281 p.Val222Ala missense_variant 0.4
thyX 3067284 p.Ala221Gly missense_variant 0.4
thyX 3067286 c.660C>G synonymous_variant 0.4
thyX 3067289 c.657C>G synonymous_variant 0.4
thyX 3067292 c.654G>A synonymous_variant 0.67
thyX 3067295 c.651C>T synonymous_variant 0.67
thyX 3067313 c.633G>T synonymous_variant 0.5
thyX 3067316 c.630A>G synonymous_variant 0.5
thyX 3067325 c.621A>G synonymous_variant 0.5
thyX 3067349 c.597G>C synonymous_variant 0.5
thyX 3067367 c.579G>C synonymous_variant 0.5
thyX 3067373 c.573C>G synonymous_variant 0.5
thyX 3067391 c.555G>C synonymous_variant 0.5
thyX 3067394 c.552G>C synonymous_variant 0.5
thyX 3067457 c.489C>G synonymous_variant 0.4
thyX 3067462 c.484C>T synonymous_variant 0.4
thyX 3067465 p.Ile161Val missense_variant 0.4
thyX 3067466 c.480G>C synonymous_variant 0.4
thyX 3067475 c.471A>G synonymous_variant 0.4
thyX 3067490 c.456C>G synonymous_variant 0.4
thyX 3067493 c.453A>G synonymous_variant 0.4
thyX 3067510 c.436C>T synonymous_variant 0.57
thyX 3067515 p.Ser144Thr missense_variant 0.67
thyX 3067530 p.Ala139Ser missense_variant 0.67
thyX 3067545 p.Glu134Ala missense_variant 0.75
thyX 3067549 p.Thr133Ala missense_variant 0.75
thyX 3067556 p.His130Gln missense_variant 0.67
thyX 3067559 c.387C>G synonymous_variant 0.67
thyX 3067565 p.Asp127Glu missense_variant 1.0
thyX 3067570 p.Ala126Pro missense_variant 1.0
thyX 3067577 c.369G>A synonymous_variant 1.0
thyX 3067718 c.228C>G synonymous_variant 0.6
thyX 3067721 c.225T>C synonymous_variant 0.6
thyX 3067727 c.219A>C synonymous_variant 0.6
thyX 3067736 c.210C>T synonymous_variant 0.75
thyX 3067761 p.Arg62Lys missense_variant 0.6
thyX 3067765 p.Leu61Ile missense_variant 0.6
thyX 3067772 c.174C>G synonymous_variant 0.6
thyX 3067775 c.171C>T synonymous_variant 0.6
thyX 3067781 c.165C>G synonymous_variant 0.67
thyX 3067793 c.153T>C synonymous_variant 0.67
thyX 3067799 c.147G>A synonymous_variant 0.67
thyX 3067802 c.144C>G synonymous_variant 0.67
thyX 3067814 c.132T>C synonymous_variant 0.75
thyX 3067850 c.96A>C synonymous_variant 0.4
thyA 3073839 c.633T>C synonymous_variant 1.0
thyA 3073860 c.612C>G synonymous_variant 0.75
thyA 3073863 c.609T>C synonymous_variant 0.75
thyA 3073866 c.606C>G synonymous_variant 0.75
thyA 3073872 p.Ile200Val missense_variant 0.75
thyA 3073890 c.580_582delTTGinsCTA synonymous_variant 0.5
thyA 3073898 p.Ala192Ser missense_variant 0.5
thyA 3073917 c.555C>G synonymous_variant 0.5
thyA 3073920 c.552C>G synonymous_variant 0.5
thyA 3073925 c.547T>C synonymous_variant 0.5
thyA 3073929 c.543T>C synonymous_variant 0.5
ald 3086635 c.-185_-184insA upstream_gene_variant 1.0
ald 3086788 c.-32T>C upstream_gene_variant 1.0
Rv3083 3448608 c.105G>A synonymous_variant 1.0
fprA 3473809 c.-198G>C upstream_gene_variant 0.8
fprA 3473812 c.-195G>A upstream_gene_variant 0.8
Rv3236c 3612665 p.Val151Ala missense_variant 1.0
fbiB 3640830 c.-705C>G upstream_gene_variant 0.4
fbiB 3640839 c.-696C>G upstream_gene_variant 0.5
fbiA 3640850 p.Glu103Gly missense_variant 0.5
fbiB 3640857 c.-678G>C upstream_gene_variant 0.5
fbiB 3640866 c.-669T>C upstream_gene_variant 0.5
fbiA 3640871 p.Ala110Gly missense_variant 0.5
fbiB 3640878 c.-657T>C upstream_gene_variant 0.6
fbiB 3640899 c.-636G>C upstream_gene_variant 0.75
fbiA 3640900 p.Gln120Asn missense_variant 0.75
fbiB 3640914 c.-621C>G upstream_gene_variant 0.75
fbiB 3642743 c.1209T>C synonymous_variant 1.0
fbiB 3642749 c.1215T>C synonymous_variant 1.0
fbiB 3642758 c.1224C>G synonymous_variant 1.0
fbiB 3642763 p.Asp410Ala missense_variant 1.0
fbiB 3642767 c.1233G>A synonymous_variant 1.0
fbiB 3642770 c.1236G>C synonymous_variant 1.0
alr 3841055 c.366C>T synonymous_variant 0.5
rpoA 3877507 p.Gly334Ala missense_variant 0.4
rpoA 3877515 c.993G>C synonymous_variant 0.33
rpoA 3877553 p.Glu319Gln missense_variant 0.5
rpoA 3877571 p.Pro313Ala missense_variant 0.5
rpoA 3877587 c.921A>G synonymous_variant 0.57
rpoA 3877613 p.Ile299Val missense_variant 0.67
rpoA 3877656 c.852T>G synonymous_variant 1.0
rpoA 3877668 c.840A>G synonymous_variant 1.0
rpoA 3877679 p.Ala277Ser missense_variant 1.0
rpoA 3877686 c.822A>G synonymous_variant 1.0
rpoA 3877692 c.816G>C synonymous_variant 1.0
rpoA 3877704 c.804G>C synonymous_variant 0.83
rpoA 3877737 c.771G>C synonymous_variant 0.57
rpoA 3877743 c.765T>C synonymous_variant 0.57
rpoA 3877764 c.744C>G synonymous_variant 0.56
rpoA 3877770 c.738A>G synonymous_variant 0.5
rpoA 3877776 c.732T>C synonymous_variant 0.5
rpoA 3877782 c.726T>C synonymous_variant 0.57
rpoA 3877791 c.717C>G synonymous_variant 0.57
rpoA 3877818 c.690A>G synonymous_variant 0.75
rpoA 3877839 c.669G>C synonymous_variant 0.5
rpoA 3877848 c.660C>T synonymous_variant 0.6
rpoA 3877962 c.546G>T synonymous_variant 1.0
rpoA 3877986 c.522G>C synonymous_variant 0.4
rpoA 3877989 c.519A>G synonymous_variant 0.4
rpoA 3878001 c.507A>G synonymous_variant 0.5
rpoA 3878022 c.486T>C synonymous_variant 0.38
rpoA 3878028 c.480G>C synonymous_variant 0.33
rpoA 3878031 c.477T>C synonymous_variant 0.25
rpoA 3878040 c.468T>C synonymous_variant 0.2
rpoA 3878187 c.321C>G synonymous_variant 0.6
rpoA 3878193 c.315T>C synonymous_variant 0.6
rpoA 3878199 c.309T>C synonymous_variant 0.8
rpoA 3878217 c.291A>G synonymous_variant 0.83
rpoA 3878226 c.282C>G synonymous_variant 0.83
rpoA 3878232 c.276G>C synonymous_variant 0.83
rpoA 3878247 c.261G>C synonymous_variant 0.83
rpoA 3878271 c.237T>C synonymous_variant 0.83
rpoA 3878284 p.Glu75Ala missense_variant 0.67
rpoA 3878292 c.216T>C synonymous_variant 0.6
rpoA 3878298 c.210A>G synonymous_variant 0.5
rpoA 3878304 c.204G>C synonymous_variant 0.4
rpoA 3878364 c.144A>C synonymous_variant 0.5
rpoA 3878367 c.141C>G synonymous_variant 0.5
rpoA 3878376 c.132G>C synonymous_variant 0.5
rpoA 3878385 c.123C>G synonymous_variant 0.67
rpoA 3878388 c.120C>G synonymous_variant 0.67
rpoA 3878391 c.117T>C synonymous_variant 0.5
rpoA 3878415 c.93C>T synonymous_variant 0.5
rpoA 3878424 c.84G>C synonymous_variant 0.5
rpoA 3878436 c.72A>G synonymous_variant 0.5
rpoA 3878442 c.66G>C synonymous_variant 0.5
rpoA 3878454 c.54A>C synonymous_variant 0.4
clpC1 4038239 c.2466T>C synonymous_variant 0.33
clpC1 4038255 p.Val817Lys missense_variant 0.38
clpC1 4038271 p.Pro812Ala missense_variant 0.38
clpC1 4038272 p.Gly811Ser missense_variant 0.38
clpC1 4038275 c.2430A>G synonymous_variant 0.38
clpC1 4038278 c.2427T>C synonymous_variant 0.38
clpC1 4038293 c.2412G>C synonymous_variant 0.38
clpC1 4038302 c.2403C>G synonymous_variant 0.38
clpC1 4038308 c.2397G>T synonymous_variant 0.43
clpC1 4038314 c.2391T>C synonymous_variant 0.43
clpC1 4038317 c.2388G>C synonymous_variant 0.43
clpC1 4038320 c.2385G>T synonymous_variant 0.4
clpC1 4038486 p.Gly740Asn missense_variant 0.5
clpC1 4038489 p.Ala739Gly missense_variant 0.67
clpC1 4038494 c.2211G>C synonymous_variant 0.5
clpC1 4038497 p.Ser736Gln missense_variant 0.5
clpC1 4038509 c.2196C>T synonymous_variant 0.33
clpC1 4038640 p.Asp689Asn missense_variant 0.5
clpC1 4038653 c.2052C>T synonymous_variant 0.5
clpC1 4038658 p.Lys683Gln missense_variant 0.5
clpC1 4038661 p.Ser682Thr missense_variant 0.5
clpC1 4038662 c.2043T>C synonymous_variant 0.5
clpC1 4038671 c.2034T>C synonymous_variant 0.5
clpC1 4038812 c.1893T>C synonymous_variant 0.67
clpC1 4038845 c.1860G>C synonymous_variant 0.67
clpC1 4038908 c.1797C>G synonymous_variant 0.5
clpC1 4038914 c.1791G>C synonymous_variant 0.5
clpC1 4038923 c.1780_1782delCTAinsTTG synonymous_variant 0.4
clpC1 4038953 c.1752A>G synonymous_variant 0.83
clpC1 4038956 c.1749T>C synonymous_variant 0.83
clpC1 4038965 c.1740T>C synonymous_variant 0.83
clpC1 4038971 c.1734T>C synonymous_variant 0.83
clpC1 4038974 c.1731T>C synonymous_variant 0.83
clpC1 4038989 c.1716T>C synonymous_variant 0.83
clpC1 4038997 c.1708T>C synonymous_variant 0.57
clpC1 4039004 c.1701C>G synonymous_variant 0.57
clpC1 4039022 c.1683A>G synonymous_variant 0.62
clpC1 4039064 c.1641C>T synonymous_variant 0.5
clpC1 4039097 c.1608G>C synonymous_variant 0.5
clpC1 4039103 c.1602T>C synonymous_variant 0.44
clpC1 4039106 c.1599G>C synonymous_variant 0.5
clpC1 4039112 c.1593C>G synonymous_variant 0.5
clpC1 4039121 c.1584T>C synonymous_variant 0.56
clpC1 4039142 c.1563A>G synonymous_variant 0.4
clpC1 4039145 c.1560G>C synonymous_variant 0.4
clpC1 4039169 p.Glu512Asp missense_variant 0.29
clpC1 4039172 c.1533A>G synonymous_variant 0.29
clpC1 4039178 c.1527G>C synonymous_variant 0.29
clpC1 4039183 c.1522T>C synonymous_variant 0.29
clpC1 4039186 c.1519C>T synonymous_variant 0.29
clpC1 4039226 c.1479T>C synonymous_variant 0.62
clpC1 4039274 c.1431G>C synonymous_variant 0.6
clpC1 4039280 c.1425G>T synonymous_variant 0.4
clpC1 4039286 c.1419T>C synonymous_variant 0.5
clpC1 4039295 c.1410A>C synonymous_variant 0.4
clpC1 4039298 c.1407T>C synonymous_variant 0.4
clpC1 4039570 p.Met379Leu missense_variant 0.67
clpC1 4039576 p.Ala377Pro missense_variant 0.67
clpC1 4039577 c.1128T>C synonymous_variant 0.67
clpC1 4039616 c.1089G>C synonymous_variant 1.0
clpC1 4039622 c.1083C>T synonymous_variant 1.0
clpC1 4039661 c.1044T>G synonymous_variant 0.6
clpC1 4039664 c.1041G>C synonymous_variant 0.6
clpC1 4039694 c.1011G>C synonymous_variant 0.4
clpC1 4039898 c.807C>G synonymous_variant 0.4
clpC1 4039928 c.775_777delAGCinsTCG synonymous_variant 0.29
clpC1 4039931 c.774T>C synonymous_variant 0.29
clpC1 4039937 c.768G>C synonymous_variant 0.22
clpC1 4039946 c.759A>C synonymous_variant 0.22
clpC1 4039952 c.753T>C synonymous_variant 0.22
clpC1 4039979 c.726C>G synonymous_variant 0.25
clpC1 4039988 c.717C>G synonymous_variant 0.25
clpC1 4039991 c.714G>C synonymous_variant 0.29
clpC1 4040090 c.613_615delTCTinsAGC synonymous_variant 0.43
clpC1 4040093 c.612C>G synonymous_variant 0.38
clpC1 4040105 c.600C>G synonymous_variant 0.38
clpC1 4040147 c.558A>G synonymous_variant 0.44
clpC1 4040162 c.543G>C synonymous_variant 0.62
clpC1 4040165 c.540G>C synonymous_variant 0.62
clpC1 4040171 c.534C>G synonymous_variant 0.62
clpC1 4040201 c.504C>G synonymous_variant 0.5
clpC1 4040228 c.477G>T synonymous_variant 0.67
clpC1 4040237 c.468C>T synonymous_variant 0.67
clpC1 4040246 c.459C>G synonymous_variant 0.6
clpC1 4040249 c.456A>G synonymous_variant 0.67
clpC1 4040267 c.438A>G synonymous_variant 0.5
clpC1 4040273 c.432T>C synonymous_variant 0.5
clpC1 4040277 c.427_428delTCinsAG synonymous_variant 0.6
clpC1 4040279 c.426C>G synonymous_variant 0.6
clpC1 4040291 c.414G>C synonymous_variant 0.67
clpC1 4040318 c.387C>G synonymous_variant 0.71
clpC1 4040321 c.384C>T synonymous_variant 0.71
clpC1 4040330 c.375C>G synonymous_variant 0.71
clpC1 4040342 c.363C>G synonymous_variant 0.62
clpC1 4040354 c.351A>G synonymous_variant 0.5
clpC1 4040363 c.342A>T synonymous_variant 0.43
clpC1 4040369 c.336C>G synonymous_variant 0.43
clpC1 4040380 c.325T>C synonymous_variant 0.33
clpC1 4040381 c.324T>C synonymous_variant 0.33
clpC1 4040387 c.318A>G synonymous_variant 0.33
clpC1 4040393 c.312G>C synonymous_variant 0.33
clpC1 4040411 c.294T>C synonymous_variant 0.33
clpC1 4040444 c.261C>T synonymous_variant 0.29
clpC1 4040450 c.255A>G synonymous_variant 0.29
clpC1 4040459 c.246C>G synonymous_variant 0.38
clpC1 4040465 c.240T>C synonymous_variant 0.43
clpC1 4040471 c.234T>C synonymous_variant 0.5
clpC1 4040477 c.228G>C synonymous_variant 0.5
clpC1 4040480 c.225T>G synonymous_variant 0.5
clpC1 4040522 c.183T>C synonymous_variant 0.43
clpC1 4040528 c.177G>C synonymous_variant 0.43
clpC1 4040531 c.174T>C synonymous_variant 0.43
clpC1 4040534 c.171A>G synonymous_variant 0.5
clpC1 4040537 c.168G>C synonymous_variant 0.6
clpC1 4040546 c.159G>C synonymous_variant 0.75
clpC1 4040551 c.154T>C synonymous_variant 0.75
clpC1 4040561 c.144A>G synonymous_variant 0.5
clpC1 4040567 c.138C>G synonymous_variant 0.5
panD 4043931 p.Met117Leu missense_variant 0.67
panD 4043939 p.Ile115Val missense_variant 0.67
panD 4044105 c.177G>C synonymous_variant 0.75
panD 4044117 c.165G>C synonymous_variant 0.75
panD 4044120 c.162A>C synonymous_variant 0.75
panD 4044123 c.159T>C synonymous_variant 0.75
panD 4044126 c.156T>C synonymous_variant 0.75
panD 4044138 c.144T>C synonymous_variant 0.67
panD 4044150 c.132A>G synonymous_variant 0.67
embC 4240645 c.783G>C synonymous_variant 0.67
embC 4240654 c.792C>G synonymous_variant 0.5
embC 4240660 c.798C>G synonymous_variant 0.5
embC 4240669 c.807G>C synonymous_variant 0.6
embC 4240671 p.Thr270Ile missense_variant 0.6
embC 4240677 p.Gly272Ala missense_variant 0.6
embC 4240685 p.Thr275Ala missense_variant 0.67
embC 4240693 c.831T>G synonymous_variant 0.67
embC 4240699 c.837C>G synonymous_variant 0.71
embC 4240726 c.864G>C synonymous_variant 0.71
embC 4240780 c.918T>C synonymous_variant 0.4
embC 4240783 c.921G>C synonymous_variant 0.4
embC 4240789 c.927T>C synonymous_variant 0.5
embC 4240819 c.957A>G synonymous_variant 0.5
embC 4240828 c.966G>A synonymous_variant 0.4
embC 4240831 c.969T>G synonymous_variant 0.4
embC 4240867 c.1005T>C synonymous_variant 0.33
embC 4240870 c.1008T>C synonymous_variant 0.33
embC 4240873 c.1011C>G synonymous_variant 0.5
embC 4240879 c.1017G>C synonymous_variant 0.5
embC 4240880 p.Ala340Thr missense_variant 0.67
embC 4240885 c.1023T>C synonymous_variant 0.67
embC 4241567 p.Ile569Val missense_variant 0.33
embC 4241572 c.1710C>G synonymous_variant 0.33
embC 4241578 c.1716G>C synonymous_variant 0.33
embC 4241584 c.1722T>C synonymous_variant 0.4
embC 4241587 c.1725C>G synonymous_variant 0.5
embC 4241591 p.Leu577Val missense_variant 0.5
embC 4241611 c.1749G>C synonymous_variant 0.4
embC 4241614 c.1752A>C synonymous_variant 0.4
embC 4241626 c.1764T>C synonymous_variant 0.4
embC 4241635 c.1773G>C synonymous_variant 0.4
embA 4242643 c.-590C>T upstream_gene_variant 0.67
embA 4245041 c.1809C>G synonymous_variant 0.25
embA 4245044 c.1812G>C synonymous_variant 0.38
embA 4245053 c.1821G>C synonymous_variant 0.4
embA 4245060 c.1828T>C synonymous_variant 0.4
embA 4245083 c.1851A>C synonymous_variant 0.54
embA 4245089 c.1857G>C synonymous_variant 0.67
embA 4245101 c.1869G>C synonymous_variant 0.64
embA 4245137 c.1905T>C synonymous_variant 0.6
embA 4245146 c.1914G>A synonymous_variant 0.55
embA 4245149 c.1917C>G synonymous_variant 0.55
embA 4245153 p.Ile641Val missense_variant 0.58
embA 4245182 c.1950T>C synonymous_variant 0.38
embA 4245189 c.1957C>T synonymous_variant 0.25
embA 4245198 p.Leu656Ile missense_variant 0.33
embA 4245207 c.1975T>C synonymous_variant 0.36
embA 4245215 c.1983A>C synonymous_variant 0.36
embA 4245222 p.Tyr664Gln missense_variant 0.36
embA 4245248 c.2016G>C synonymous_variant 0.4
embA 4245257 c.2025A>G synonymous_variant 0.33
embA 4245263 c.2031A>G synonymous_variant 0.38
embB 4245701 c.-813G>C upstream_gene_variant 0.29
embB 4245704 c.-810G>C upstream_gene_variant 0.25
embB 4245725 c.-789A>G upstream_gene_variant 0.27
embB 4245726 c.-788T>C upstream_gene_variant 0.27
embB 4245737 c.-777A>C upstream_gene_variant 0.3
embB 4245740 c.-774T>C upstream_gene_variant 0.3
embB 4245764 c.-750G>C upstream_gene_variant 0.3
embA 4245772 p.Asn847Thr missense_variant 0.3
embB 4245785 c.-729G>C upstream_gene_variant 0.3
embB 4245807 c.-707T>C upstream_gene_variant 0.33
embB 4245833 c.-681G>C upstream_gene_variant 0.22
embB 4245842 c.-672G>C upstream_gene_variant 0.22
embB 4245845 c.-669T>C upstream_gene_variant 0.3
embB 4245851 c.-663G>C upstream_gene_variant 0.33
embB 4245860 c.-654C>G upstream_gene_variant 0.33
embA 4245885 p.Asp885Thr missense_variant 0.25
embA 4245892 p.Ile887Thr missense_variant 0.22
embB 4245899 c.-615C>G upstream_gene_variant 0.22
embB 4245902 c.-612G>A upstream_gene_variant 0.22
embB 4245905 c.-609C>G upstream_gene_variant 0.22
embB 4245911 c.-603A>G upstream_gene_variant 0.25
embB 4245917 c.-597G>A upstream_gene_variant 0.25
embB 4246205 c.-309A>G upstream_gene_variant 0.67
embB 4246211 c.-303T>C upstream_gene_variant 0.67
embB 4246217 c.-297G>A upstream_gene_variant 0.67
embB 4246220 c.-294T>C upstream_gene_variant 0.67
embB 4246223 c.-291C>T upstream_gene_variant 0.67
embA 4246227 p.Ile999Val missense_variant 0.67
embB 4246235 c.-279G>A upstream_gene_variant 0.67
embA 4246242 p.Gln1004Gly missense_variant 0.67
embB 4246250 c.-264G>C upstream_gene_variant 0.67
embB 4246256 c.-258G>T upstream_gene_variant 0.5
embB 4246259 c.-255G>C upstream_gene_variant 0.6
embA 4246264 p.His1011Arg missense_variant 0.6
embB 4246292 c.-222A>G upstream_gene_variant 0.6
embB 4246316 c.-198T>G upstream_gene_variant 0.5
embB 4246319 c.-195G>C upstream_gene_variant 0.6
embA 4246329 p.Thr1033Ala missense_variant 0.5
embB 4246349 c.-165C>G upstream_gene_variant 0.5
embA 4246359 p.Ala1043Ser missense_variant 0.6
embB 4246367 c.-147C>T upstream_gene_variant 0.5
embB 4246373 c.-141T>C upstream_gene_variant 0.5
embB 4246376 c.-138G>C upstream_gene_variant 0.4
embB 4246379 c.-135C>T upstream_gene_variant 0.4
embB 4246400 c.-114G>C upstream_gene_variant 0.4
embB 4247425 c.912G>C synonymous_variant 0.67
embB 4247434 c.921C>G synonymous_variant 0.67
embB 4247437 c.924A>G synonymous_variant 0.67
embB 4247440 c.927C>G synonymous_variant 0.67
embB 4247446 c.933C>T synonymous_variant 0.5
embB 4247464 c.951C>G synonymous_variant 0.6
embB 4247470 c.957T>C synonymous_variant 0.6
embB 4247491 c.978G>C synonymous_variant 0.71
embB 4247497 c.984T>C synonymous_variant 0.62
embB 4247512 c.999T>C synonymous_variant 0.57
embB 4247539 c.1026T>C synonymous_variant 0.62
embB 4247554 c.1041T>C synonymous_variant 0.67
embB 4247566 c.1053C>A synonymous_variant 0.67
embB 4247572 c.1059A>G synonymous_variant 0.67
embB 4247579 p.Ala356Phe missense_variant 0.6
embB 4247587 c.1074G>A synonymous_variant 0.5
embB 4247603 c.1090C>T synonymous_variant 0.67
embB 4247761 c.1248T>C synonymous_variant 0.5
embB 4247773 c.1260G>A synonymous_variant 0.5
embB 4247776 c.1263G>T synonymous_variant 0.67
embB 4247797 c.1284C>G synonymous_variant 0.83
embB 4247800 c.1287A>T synonymous_variant 0.71
embB 4247803 c.1290G>C synonymous_variant 0.71
embB 4247815 c.1302C>G synonymous_variant 0.71
embB 4247819 p.Val436Ile missense_variant 0.71
embB 4247830 c.1317A>G synonymous_variant 0.71
embB 4247836 c.1323A>G synonymous_variant 0.71
embB 4247839 c.1326G>C synonymous_variant 0.71
embB 4247866 c.1353G>C synonymous_variant 0.67
embB 4247974 c.1461C>G synonymous_variant 0.6
embB 4248007 c.1494C>G synonymous_variant 0.5
embB 4248011 p.Ser500Arg missense_variant 0.5
embB 4248014 p.Thr501Ala missense_variant 0.5
embB 4248035 p.Val508Ile missense_variant 0.33
embB 4248040 c.1527C>G synonymous_variant 0.33
embB 4248041 p.Ala510Thr missense_variant 0.33
embB 4248044 p.Lys511Ala missense_variant 0.33
embB 4248304 c.1791G>C synonymous_variant 0.38
embB 4248316 c.1803C>G synonymous_variant 0.33
embB 4248319 c.1806A>G synonymous_variant 0.38
embB 4248343 c.1830G>C synonymous_variant 0.4
embB 4248382 c.1869C>G synonymous_variant 0.5
embB 4248386 c.1873C>A synonymous_variant 0.5
embB 4248433 p.Trp640Cys missense_variant 0.5
embB 4248457 c.1944T>C synonymous_variant 0.4
embB 4249469 p.Leu986Met missense_variant 0.4
embB 4249486 c.2973T>G synonymous_variant 0.43
embB 4249498 c.2985G>C synonymous_variant 0.43
embB 4249521 p.Ala1003Val missense_variant 0.5
embB 4249525 c.3012T>C synonymous_variant 0.5
embB 4249529 p.Ile1006Val missense_variant 0.5
embB 4249532 p.Ala1007Thr missense_variant 0.5
embB 4249537 c.3024A>G synonymous_variant 0.5
embB 4249543 c.3030G>C synonymous_variant 0.5
embB 4249546 c.3033G>A synonymous_variant 0.5
embB 4249558 c.3045A>C synonymous_variant 0.5
embB 4249568 p.Ser1019Thr missense_variant 0.5
embB 4249573 c.3060T>C synonymous_variant 0.5
aftB 4269027 c.-191C>T upstream_gene_variant 0.67
aftB 4269033 c.-197T>C upstream_gene_variant 0.67
aftB 4269036 c.-200C>G upstream_gene_variant 0.5
aftB 4269042 c.-206G>C upstream_gene_variant 0.5
ubiA 4269075 p.Ile253Val missense_variant 0.67
whiB6 4338595 c.-75delG upstream_gene_variant 1.0